Raspbian Package Auto-Building

Build log for pinfish (0.1.0+ds-2) on armhf

pinfish0.1.0+ds-2armhf → 2021-05-08 18:56:06

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| pinfish 0.1.0+ds-2 (armhf)                   Sat, 08 May 2021 18:48:06 +0000 |
+==============================================================================+

Package: pinfish
Version: 0.1.0+ds-2
Source Version: 0.1.0+ds-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-8d3f9e9b-c25b-4dbe-b6b0-a43f6142a161' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pinfish-4jTfLp/resolver-kkMS77' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.2 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.2 MB]
Fetched 25.5 MB in 14s (1827 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pinfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pinfish.git
Please use:
git clone https://salsa.debian.org/med-team/pinfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 73.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (dsc) [2535 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (tar) [68.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (tar) [5055 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (diff) [6484 B]
Fetched 73.6 MB in 29s (2577 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pinfish-4jTfLp/pinfish-0.1.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pinfish-4jTfLp' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [416 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [502 B]
Fetched 1875 B in 0s (35.2 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
  gettext-base golang-1.15-go golang-1.15-src golang-any
  golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
  golang-github-creack-pty-dev golang-github-google-uuid-dev
  golang-github-kr-pretty-dev golang-github-kr-text-dev
  golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev
  golang-src groff-base intltool-debian libarchive-zip-perl libbrotli1
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
  libfile-stripnondeterminism-perl libhts3 libicu67 libmagic-mgc libmagic1
  libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsigsegv2
  libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
  po-debconf samtools sensible-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev bzr | brz ca-certificates git mercurial
  subversion groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
  apparmor less www-browser libmail-box-perl cwltool
Recommended packages:
  curl | wget | lynx pkg-config ca-certificates libarchive-cpio-perl libgpm2
  publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
  gettext-base golang-1.15-go golang-1.15-src golang-any
  golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
  golang-github-creack-pty-dev golang-github-google-uuid-dev
  golang-github-kr-pretty-dev golang-github-kr-text-dev
  golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev
  golang-src groff-base intltool-debian libarchive-zip-perl libbrotli1
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
  libfile-stripnondeterminism-perl libhts3 libicu67 libmagic-mgc libmagic1
  libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsigsegv2
  libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
  po-debconf samtools sbuild-build-depends-main-dummy sensible-utils
0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded.
Need to get 77.3 MB of archives.
After this operation, 406 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-7 [137 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210201-1 [164 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.4 [1049 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-golang all 1.51 [24.6 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf golang-1.15-src armhf 1.15.9-1+rpi1 [13.8 MB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf golang-1.15-go armhf 1.15.9-1+rpi1 [43.1 MB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf golang-src armhf 2:1.15~1 [4856 B]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf golang-go armhf 2:1.15~1 [23.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf golang-any armhf 2:1.15~1 [4976 B]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-1 [351 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf golang-github-biogo-hts-dev all 1.1.0+dfsg1-2 [292 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf golang-github-creack-pty-dev all 1.1.11-1 [8380 B]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf golang-github-kr-text-dev all 0.2.0-1 [11.1 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf golang-github-kr-pretty-dev all 0.2.1+git20200831.59b4212-1 [14.6 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf golang-github-biogo-biogo-dev all 1.0.3-1 [190 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf golang-github-google-uuid-dev all 1.2.0-1 [15.0 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.2 [302 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-4 [324 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf samtools armhf 1.11-1 [502 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../50-libcurl3-gnutls_7.74.0-1.2_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.74.0-1.2) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../51-libdeflate0_1.7-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.7-1) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../52-libhts3_1.11-4_armhf.deb ...
Unpacking libhts3:armhf (1.11-4) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../53-libncurses6_6.2+20201114-2_armhf.deb ...
Unpacking libncurses6:armhf (6.2+20201114-2) ...
Selecting previously unselected package samtools.
Preparing to unpack .../54-samtools_1.11-1_armhf.deb ...
Unpacking samtools (1.11-1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../55-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.36.1-7) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up golang-github-creack-pty-dev (1.1.11-1) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up golang-1.15-src (1.15.9-1+rpi1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.7-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up golang-github-kr-text-dev (0.2.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up sensible-utils (0.0.14) ...
Setting up golang-github-google-uuid-dev (1.2.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.9.0-2) ...
Setting up golang-src:armhf (2:1.15~1) ...
Setting up golang-1.15-go (1.15.9-1+rpi1) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up golang-github-ulikunitz-xz-dev (0.5.6-1) ...
Setting up golang-github-kr-pretty-dev (0.2.1+git20200831.59b4212-1) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up golang-go (2:1.15~1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.2) ...
Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ...
Setting up golang-any:armhf (2:1.15~1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up golang-github-biogo-hts-dev (1.1.0+dfsg1-2) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-4) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up samtools (1.11-1) ...
Setting up dh-autoreconf (20) ...
Setting up golang-github-biogo-biogo-dev (1.0.3-1) ...
Setting up debhelper (13.3.4) ...
Setting up dh-golang (1.51) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-11+rpi1) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-11+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.28-1+rpi1
Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.49 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.75 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-golang_1.51 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.13+20210201-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 golang-1.15-go_1.15.9-1+rpi1 golang-1.15-src_1.15.9-1+rpi1 golang-any_2:1.15~1 golang-github-biogo-biogo-dev_1.0.3-1 golang-github-biogo-hts-dev_1.1.0+dfsg1-2 golang-github-creack-pty-dev_1.1.11-1 golang-github-google-uuid-dev_1.2.0-1 golang-github-kr-pretty-dev_0.2.1+git20200831.59b4212-1 golang-github-kr-text-dev_0.2.0-1 golang-github-ulikunitz-xz-dev_0.5.6-1 golang-go_2:1.15~1 golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1 golang-src_2:1.15~1 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.3 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-7 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-11+rpi1 libc-dev-bin_2.31-11+rpi1 libc6_2.31-11+rpi1 libc6-dev_2.31-11+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-1 libcrypt-dev_1:4.4.18-2 libcrypt1_1:4.4.18-2 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libcurl3-gnutls_7.74.0-1.2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.257 libdebhelper-perl_13.3.4 libdeflate0_1.7-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.183-1 libext2fs2_1.46.2-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-3 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-3 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-5 libhogweed6_3.7.2-3 libhts3_1.11-4 libicu67_67.1-6 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-2 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7.2-3 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libreadline8_8.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-7 libsqlite3-0_3.34.1-3 libss2_1.46.2-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-5+rpi1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-5+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libxml2_2.9.10+dfsg-6.3 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.28-1+rpi1 login_1:4.8.1-1 logsave_1.46.2-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4 perl-base_5.32.1-4 perl-modules-5.32_5.32.1-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: pinfish
Binary: pinfish, pinfish-examples
Architecture: any all
Version: 0.1.0+ds-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <npatra974@gmail.com>
Homepage: https://github.com/nanoporetech/pinfish
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/pinfish
Vcs-Git: https://salsa.debian.org/med-team/pinfish.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools
Package-List:
 pinfish deb science optional arch=any
 pinfish-examples deb science optional arch=all
Checksums-Sha1:
 72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
 f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz
 2b1e113c874686aee6af230f43b8a9bad3f9e41c 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Checksums-Sha256:
 40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
 c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz
 2f51b7af7ce10ad7418aa3ae177caf69b67636427f1b5c689b5f480bb8268168 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Files:
 f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
 70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz
 bc12a46d1a912f1c74c3de8fd5671644 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Go-Import-Path: github.com/nanoporetech/pinfish

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.H2wwynPY/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 10 09:27:35 2020 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pinfish_0.1.0+ds-2.dsc
dpkg-source: info: extracting pinfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-gonum-stat-usage.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=28324993283040c09eb51e44c2225ece
JOURNAL_STREAM=8:20070
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-8d3f9e9b-c25b-4dbe-b6b0-a43f6142a161
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c19425
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package pinfish
dpkg-buildpackage: info: source version 0.1.0+ds-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --builddirectory=_build --buildsystem=golang --with=golang
   dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang
   dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang
   dh_clean -O--builddirectory=_build -O--buildsystem=golang
 debian/rules binary-arch
dh binary-arch --builddirectory=_build --buildsystem=golang --with=golang
   dh_update_autotools_config -a -O--builddirectory=_build -O--buildsystem=golang
   dh_autoreconf -a -O--builddirectory=_build -O--buildsystem=golang
   dh_auto_configure -a -O--builddirectory=_build -O--buildsystem=golang
   dh_auto_build -a -O--builddirectory=_build -O--buildsystem=golang
	cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff
internal/race
internal/cpu
internal/unsafeheader
runtime/internal/sys
unicode
sync/atomic
runtime/internal/math
internal/bytealg
runtime/internal/atomic
unicode/utf8
math/bits
internal/testlog
crypto/internal/subtle
crypto/subtle
math
internal/nettrace
runtime
runtime/cgo
internal/reflectlite
sync
internal/singleflight
math/rand
errors
sort
io
strconv
internal/oserror
syscall
vendor/golang.org/x/net/dns/dnsmessage
bytes
strings
reflect
hash
crypto
hash/crc32
bufio
internal/syscall/unix
time
internal/syscall/execenv
github.com/biogo/biogo/feat
github.com/biogo/biogo/feat/gene
github.com/biogo/biogo/io/featio
text/tabwriter
container/heap
context
internal/poll
os
internal/fmtsort
encoding/binary
crypto/sha1
crypto/cipher
crypto/md5
fmt
path/filepath
net
crypto/aes
io/ioutil
os/exec
github.com/biogo/biogo/alphabet
flag
encoding/csv
math/big
database/sql/driver
github.com/biogo/biogo/seq
github.com/biogo/biogo/feat/genome
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/seq/linear
github.com/biogo/biogo/io/seqio/fasta
encoding/hex
github.com/biogo/biogo/io/featio/gff
log
compress/flate
github.com/biogo/biogo/io/seqio/fastq
net/url
compress/gzip
crypto/rand
github.com/biogo/hts/bgzf
runtime/pprof
github.com/biogo/hts/bgzf/index
github.com/biogo/hts/internal
github.com/biogo/hts/sam
github.com/biogo/hts/bam
github.com/nanoporetech/pinfish/polish_clusters
github.com/nanoporetech/pinfish/spliced_bam2gff
# github.com/nanoporetech/pinfish/polish_clusters
src/github.com/nanoporetech/pinfish/polish_clusters/polish.go:161:6: constant 9223372036854775807 overflows int
github.com/google/uuid
github.com/nanoporetech/pinfish/cluster_gff
github.com/nanoporetech/pinfish/collapse_partials
dh_auto_build: error: cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff returned exit code 2
make: *** [debian/rules:4: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2021-05-08T18:55:51Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 351396
Build-Time: 26
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 361
Job: pinfish_0.1.0+ds-2
Machine Architecture: armhf
Package: pinfish
Package-Time: 465
Source-Version: 0.1.0+ds-2
Space: 351396
Status: attempted
Version: 0.1.0+ds-2
--------------------------------------------------------------------------------
Finished at 2021-05-08T18:55:51Z
Build needed 00:07:45, 351396k disk space