pinfish →
0.1.0+ds-2 →
armhf → 2020-12-03 06:48:15
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| pinfish 0.1.0+ds-2 (armhf) Thu, 03 Dec 2020 06:39:38 +0000 |
+==============================================================================+
Package: pinfish
Version: 0.1.0+ds-2
Source Version: 0.1.0+ds-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-da6f6763-2c6e-4b63-9bc0-eba5d1ae64fc' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/pinfish-VT7jqR/resolver-GEfEE1' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.9 MB in 14s (1794 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pinfish' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pinfish.git
Please use:
git clone https://salsa.debian.org/med-team/pinfish.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 73.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (dsc) [2535 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (tar) [68.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (tar) [5055 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main pinfish 0.1.0+ds-2 (diff) [6484 B]
Fetched 73.6 MB in 35s (2125 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pinfish-VT7jqR/pinfish-0.1.0+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pinfish-VT7jqR' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [416 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [501 B]
Fetched 1874 B in 0s (22.8 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
gettext-base golang-1.15-go golang-1.15-src golang-any
golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
golang-github-creack-pty-dev golang-github-google-uuid-dev
golang-github-kr-pretty-dev golang-github-kr-text-dev
golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev
golang-src groff-base intltool-debian libarchive-zip-perl libbrotli1
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libhts3 libicu67 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4
man-db po-debconf samtools sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev bzr | brz ca-certificates git mercurial
subversion groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl cwltool
Recommended packages:
curl | wget | lynx pkg-config ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 publicsuffix
libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-golang dh-strip-nondeterminism dwz file gettext
gettext-base golang-1.15-go golang-1.15-src golang-any
golang-github-biogo-biogo-dev golang-github-biogo-hts-dev
golang-github-creack-pty-dev golang-github-google-uuid-dev
golang-github-kr-pretty-dev golang-github-kr-text-dev
golang-github-ulikunitz-xz-dev golang-go golang-gopkg-check.v1-dev
golang-src groff-base intltool-debian libarchive-zip-perl libbrotli1
libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libhts3 libicu67 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libxml2 m4
man-db po-debconf samtools sbuild-build-depends-main-dummy sensible-utils
0 upgraded, 58 newly installed, 0 to remove and 42 not upgraded.
Need to get 78.3 MB of archives.
After this operation, 409 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-1 [133 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-1 [1176 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dh-golang all 1.49 [24.3 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf golang-1.15-src armhf 1.15.5-2+rpi1 [13.8 MB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf golang-1.15-go armhf 1.15.5-2+rpi1 [43.1 MB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf golang-src armhf 2:1.15~1 [4856 B]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf golang-go armhf 2:1.15~1 [23.9 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf golang-any armhf 2:1.15~1 [4976 B]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-1 [351 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf golang-github-biogo-hts-dev all 1.1.0+dfsg1-2 [292 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf golang-github-creack-pty-dev all 1.1.11-1 [8380 B]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf golang-github-kr-text-dev all 0.2.0-1 [11.1 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf golang-github-kr-pretty-dev all 0.2.1+git20200831.59b4212-1 [14.6 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf golang-github-biogo-biogo-dev all 1.0.2-3 [188 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf golang-github-google-uuid-dev all 1.1.1-1 [14.1 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-2 [318 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf samtools armhf 1.11-1 [502 kB]
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Preparing to unpack .../49-libpsl5_0.21.0-1.1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../50-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../51-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../52-libcurl3-gnutls_7.72.0-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.72.0-1) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../53-libdeflate0_1.6-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.6-1) ...
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Unpacking libhts3:armhf (1.11-2) ...
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Unpacking libncurses6:armhf (6.2+20200918-1) ...
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Preparing to unpack .../56-samtools_1.11-1_armhf.deb ...
Unpacking samtools (1.11-1) ...
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Preparing to unpack .../57-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up bsdextrautils (2.36.1-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up golang-github-creack-pty-dev (1.1.11-1) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up golang-1.15-src (1.15.5-2+rpi1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2) ...
Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up golang-github-kr-text-dev (0.2.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20200918-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up golang-github-google-uuid-dev (1.1.1-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up golang-src:armhf (2:1.15~1) ...
Setting up golang-1.15-go (1.15.5-2+rpi1) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up golang-github-ulikunitz-xz-dev (0.5.6-1) ...
Setting up golang-github-kr-pretty-dev (0.2.1+git20200831.59b4212-1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up golang-go (2:1.15~1) ...
Setting up m4 (1.4.18-4) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ...
Setting up golang-any:armhf (2:1.15~1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up golang-github-biogo-hts-dev (1.1.0+dfsg1-2) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-2) ...
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up samtools (1.11-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up golang-github-biogo-biogo-dev (1.0.2-3) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up dh-golang (1.49) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36.1-1 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-golang_1.49 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gcc-9-base_9.3.0-18+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 golang-1.15-go_1.15.5-2+rpi1 golang-1.15-src_1.15.5-2+rpi1 golang-any_2:1.15~1 golang-github-biogo-biogo-dev_1.0.2-3 golang-github-biogo-hts-dev_1.1.0+dfsg1-2 golang-github-creack-pty-dev_1.1.11-1 golang-github-google-uuid-dev_1.1.1-1 golang-github-kr-pretty-dev_0.2.1+git20200831.59b4212-1 golang-github-kr-text-dev_0.2.0-1 golang-github-ulikunitz-xz-dev_0.5.6-1 golang-go_2:1.15~1 golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1 golang-src_2:1.15~1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblkid1_2.36-3 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-16+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdeflate0_1.6-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libhts3_1.11-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.1 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 samtools_1.11-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pinfish
Binary: pinfish, pinfish-examples
Architecture: any all
Version: 0.1.0+ds-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <npatra974@gmail.com>
Homepage: https://github.com/nanoporetech/pinfish
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/pinfish
Vcs-Git: https://salsa.debian.org/med-team/pinfish.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools
Package-List:
pinfish deb science optional arch=any
pinfish-examples deb science optional arch=all
Checksums-Sha1:
72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz
2b1e113c874686aee6af230f43b8a9bad3f9e41c 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Checksums-Sha256:
40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz
2f51b7af7ce10ad7418aa3ae177caf69b67636427f1b5c689b5f480bb8268168 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Files:
f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz
bc12a46d1a912f1c74c3de8fd5671644 6484 pinfish_0.1.0+ds-2.debian.tar.xz
Go-Import-Path: github.com/nanoporetech/pinfish
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.xaHRSL1K/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 10 09:27:35 2020 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pinfish_0.1.0+ds-2.dsc
dpkg-source: info: extracting pinfish in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz
dpkg-source: info: unpacking pinfish_0.1.0+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-gonum-stat-usage.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=1ec3ff19654148fab3a02153247d5928
JOURNAL_STREAM=8:145870
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-da6f6763-2c6e-4b63-9bc0-eba5d1ae64fc
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c33465
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package pinfish
dpkg-buildpackage: info: source version 0.1.0+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --builddirectory=_build --buildsystem=golang --with=golang
dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang
dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang
dh_clean -O--builddirectory=_build -O--buildsystem=golang
debian/rules binary-arch
dh binary-arch --builddirectory=_build --buildsystem=golang --with=golang
dh_update_autotools_config -a -O--builddirectory=_build -O--buildsystem=golang
dh_autoreconf -a -O--builddirectory=_build -O--buildsystem=golang
dh_auto_configure -a -O--builddirectory=_build -O--buildsystem=golang
dh_auto_build -a -O--builddirectory=_build -O--buildsystem=golang
cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff
runtime/internal/sys
internal/race
internal/cpu
internal/unsafeheader
sync/atomic
unicode
runtime/internal/math
unicode/utf8
internal/bytealg
runtime/internal/atomic
math/bits
internal/testlog
math
crypto/internal/subtle
crypto/subtle
runtime
internal/nettrace
runtime/cgo
internal/reflectlite
sync
internal/singleflight
math/rand
errors
sort
internal/oserror
io
strconv
syscall
vendor/golang.org/x/net/dns/dnsmessage
bytes
strings
reflect
hash
crypto
hash/crc32
bufio
github.com/biogo/biogo/feat
internal/syscall/unix
time
internal/syscall/execenv
github.com/biogo/biogo/feat/gene
github.com/biogo/biogo/io/featio
text/tabwriter
container/heap
context
internal/poll
os
internal/fmtsort
encoding/binary
crypto/sha1
crypto/cipher
crypto/md5
fmt
path/filepath
net
crypto/aes
io/ioutil
os/exec
github.com/biogo/biogo/alphabet
flag
encoding/csv
math/big
database/sql/driver
github.com/biogo/biogo/seq
github.com/biogo/biogo/feat/genome
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/seq/linear
github.com/biogo/biogo/io/seqio/fasta
encoding/hex
github.com/biogo/biogo/io/featio/gff
log
compress/flate
github.com/biogo/biogo/io/seqio/fastq
net/url
compress/gzip
crypto/rand
github.com/biogo/hts/bgzf
runtime/pprof
github.com/biogo/hts/bgzf/index
github.com/biogo/hts/internal
github.com/biogo/hts/sam
github.com/biogo/hts/bam
github.com/nanoporetech/pinfish/spliced_bam2gff
github.com/nanoporetech/pinfish/polish_clusters
# github.com/nanoporetech/pinfish/polish_clusters
src/github.com/nanoporetech/pinfish/polish_clusters/polish.go:161:6: constant 9223372036854775807 overflows int
github.com/google/uuid
github.com/nanoporetech/pinfish/cluster_gff
github.com/nanoporetech/pinfish/collapse_partials
dh_auto_build: error: cd _build && go install -trimpath -v -p 4 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff returned exit code 2
make: *** [debian/rules:4: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-12-03T06:47:43Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 351360
Build-Time: 21
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 383
Job: pinfish_0.1.0+ds-2
Machine Architecture: armhf
Package: pinfish
Package-Time: 485
Source-Version: 0.1.0+ds-2
Space: 351360
Status: attempted
Version: 0.1.0+ds-2
--------------------------------------------------------------------------------
Finished at 2020-12-03T06:47:43Z
Build needed 00:08:05, 351360k disk space