phybin →
0.3-6 →
armhf → 2023-01-02 00:28:17
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| phybin 0.3-6 (armhf) Mon, 02 Jan 2023 00:05:35 +0000 |
+==============================================================================+
Package: phybin
Version: 0.3-6
Source Version: 0.3-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-a800d421-2dca-4769-a2ec-f715703e7d9a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/phybin-PlXKV8/resolver-xjdMbu' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.9 MB in 11s (2552 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'phybin' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/phybin.git
Please use:
git clone https://salsa.debian.org/med-team/phybin.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 120 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main phybin 0.3-6 (dsc) [1607 B]
Get:2 http://172.17.4.1/private bookworm-staging/main phybin 0.3-6 (tar) [112 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main phybin 0.3-6 (diff) [7276 B]
Fetched 120 kB in 0s (954 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/phybin-PlXKV8/phybin-0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/phybin-PlXKV8' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-tasty-dev, libghc-tasty-hunit-dev, libghc-tasty-th-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-tasty-dev, libghc-tasty-hunit-dev, libghc-tasty-th-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [475 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [557 B]
Fetched 1989 B in 0s (53.2 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cdbs dctrl-tools
debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz file
gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libb-hooks-op-check-perl libbrotli1 libbsd-dev libbsd0
libconst-fast-perl libcurl3-gnutls libdata-optlist-perl libdebhelper-perl
libdevel-callchecker-perl libdevel-confess-perl libdynaloader-functions-perl
libedit2 libelf1 libffi-dev libfile-stripnondeterminism-perl
libghc-ansi-terminal-dev libghc-ansi-wl-pprint-dev libghc-async-dev
libghc-base-compat-dev libghc-call-stack-dev libghc-clock-dev
libghc-colour-dev libghc-dlist-dev libghc-fgl-dev libghc-graphviz-dev
libghc-hashable-dev libghc-hierarchical-clustering-dev libghc-hunit-dev
libghc-optparse-applicative-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-split-dev libghc-splitmix-dev
libghc-src-exts-dev libghc-tagged-dev libghc-tasty-dev
libghc-tasty-hunit-dev libghc-tasty-th-dev libghc-temporary-dev
libghc-transformers-compat-dev libghc-unbounded-delays-dev libghc-vector-dev
libghc-wcwidth-dev libghc-wl-pprint-text-dev libgmp-dev libgmpxx4ldbl
libicu72 libipc-run3-perl liblist-someutils-perl libllvm13 libmagic-mgc
libmagic1 libmd-dev libmd0 libmodule-implementation-perl
libmodule-runtime-perl libncurses-dev libncurses6 libnghttp2-14
libparams-classify-perl libparams-util-perl libpath-tiny-perl libpfm4
libpipeline1 libpsl5 librtmp1 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-install-perl libsub-override-perl
libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunicode-utf8-perl
libxml2 libz3-4 llvm-13 llvm-13-linker-tools llvm-13-runtime m4 man-db
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc devscripts debtags dh-make
gettext-doc libasprintf-dev libgettextpo-dev ghc-prof ghc-doc haskell-doc
groff gmp-doc libgmp10-doc libmpfr-dev ncurses-doc libscalar-number-perl
libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl
llvm-13-doc m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl
liblist-someutils-xs-perl libgpm2 publicsuffix libltdl-dev llvm-13-dev
binfmt-support | systemd libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cdbs dctrl-tools
debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz file
gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libb-hooks-op-check-perl libbrotli1 libbsd-dev libbsd0
libconst-fast-perl libcurl3-gnutls libdata-optlist-perl libdebhelper-perl
libdevel-callchecker-perl libdevel-confess-perl libdynaloader-functions-perl
libedit2 libelf1 libffi-dev libfile-stripnondeterminism-perl
libghc-ansi-terminal-dev libghc-ansi-wl-pprint-dev libghc-async-dev
libghc-base-compat-dev libghc-call-stack-dev libghc-clock-dev
libghc-colour-dev libghc-dlist-dev libghc-fgl-dev libghc-graphviz-dev
libghc-hashable-dev libghc-hierarchical-clustering-dev libghc-hunit-dev
libghc-optparse-applicative-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-split-dev libghc-splitmix-dev
libghc-src-exts-dev libghc-tagged-dev libghc-tasty-dev
libghc-tasty-hunit-dev libghc-tasty-th-dev libghc-temporary-dev
libghc-transformers-compat-dev libghc-unbounded-delays-dev libghc-vector-dev
libghc-wcwidth-dev libghc-wl-pprint-text-dev libgmp-dev libgmpxx4ldbl
libicu72 libipc-run3-perl liblist-someutils-perl libllvm13 libmagic-mgc
libmagic1 libmd-dev libmd0 libmodule-implementation-perl
libmodule-runtime-perl libncurses-dev libncurses6 libnghttp2-14
libparams-classify-perl libparams-util-perl libpath-tiny-perl libpfm4
libpipeline1 libpsl5 librtmp1 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-install-perl libsub-override-perl
libtimedate-perl libtool libtry-tiny-perl libuchardet0 libunicode-utf8-perl
libxml2 libz3-4 llvm-13 llvm-13-linker-tools llvm-13-runtime m4 man-db
po-debconf sbuild-build-depends-main-dummy
0 upgraded, 110 newly installed, 0 to remove and 16 not upgraded.
Need to get 195 MB of archives.
After this operation, 1505 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [980 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20221030-2 [76.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-3 [5798 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libllvm13 armhf 1:13.0.1-10+rpi1 [17.8 MB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf llvm-13-runtime armhf 1:13.0.1-10+rpi1 [210 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf llvm-13-linker-tools armhf 1:13.0.1-10+rpi1 [986 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libpfm4 armhf 4.12.1+git6-g8aaaf17-1 [44.8 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf llvm-13 armhf 1:13.0.1-10+rpi1 [9434 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg1-1.1 [338 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg1-1.1 [582 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libffi-dev armhf 3.4.4-1 [60.4 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libmd-dev armhf 1.0.4-2 [46.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libbsd-dev armhf 0.11.7-1 [235 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf ghc armhf 9.0.2-4+rpi3 [123 MB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf cdbs all 0.4.164 [46.8 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.3 [81.1 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.3 [942 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dh-buildinfo all 0.11+nmu2 [18.4 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-1 [327 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf html-xml-utils armhf 7.7-1.1 [204 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libconst-fast-perl all 0.014-2 [8792 B]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libdevel-confess-perl all 0.009004-3 [19.6 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libipc-run3-perl all 0.048-3 [33.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf liblist-someutils-perl all 0.58-3 [36.5 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libpath-tiny-perl all 0.124-1 [56.1 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libunicode-utf8-perl armhf 0.62-2 [19.5 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf haskell-devscripts-minimal all 0.16.29 [65.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf hscolour armhf 1.24.4-4+b1 [1419 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf haskell-devscripts all 0.16.29 [17.8 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libghc-colour-dev armhf 2.3.6-1+b1 [249 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libghc-ansi-terminal-dev armhf 0.11.3-1+b1 [208 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libghc-ansi-wl-pprint-dev armhf 0.6.9-5+b1 [85.9 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libghc-hashable-dev armhf 1.3.5.0-2 [143 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libghc-async-dev armhf 2.2.4-1 [81.2 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libghc-base-compat-dev armhf 0.11.2-1+b1 [86.4 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libghc-call-stack-dev armhf 0.4.0-1+b1 [25.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libghc-clock-dev armhf 0.8.3-1+b1 [119 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libghc-dlist-dev armhf 1.0-2+b1 [87.8 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libghc-fgl-dev armhf 5.7.0.3-2 [531 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libghc-polyparse-dev armhf 1.13-2+b1 [463 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libghc-splitmix-dev armhf 0.1.0.4-1 [72.4 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libghc-random-dev armhf 1.2.1.1-2 [378 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libghc-temporary-dev armhf 1.3-3 [29.9 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libghc-wl-pprint-text-dev armhf 1.2.0.2-1+b1 [104 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libghc-graphviz-dev armhf 2999.20.1.0-1+b1 [4844 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libghc-hierarchical-clustering-dev armhf 0.4.7-2+b1 [108 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libghc-hunit-dev armhf 1.6.2.0-1 [130 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libghc-transformers-compat-dev armhf 0.6.6-1+b1 [105 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libghc-optparse-applicative-dev armhf 0.16.1.0-1 [407 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libghc-prettyclass-dev armhf 1.0.0.0-10+b1 [63.2 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libghc-primitive-dev armhf 0.7.3.0-1 [403 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libghc-split-dev armhf 0.2.3.5-1 [58.2 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libghc-src-exts-dev armhf 1.23.1-3 [2595 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libghc-tagged-dev armhf 0.8.6.1-1 [87.8 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libghc-unbounded-delays-dev armhf 0.1.1.1-1+b1 [22.3 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libghc-wcwidth-dev armhf 0.0.2-3 [13.5 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libghc-tasty-dev armhf 1.4.2.3-1+b1 [455 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libghc-tasty-hunit-dev armhf 0.10.0.3-1+b1 [51.4 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libghc-tasty-th-dev armhf 0.1.7-5+b1 [31.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libghc-vector-dev armhf 0.12.3.1-1 [2322 kB]
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Setting up bsdextrautils (2.38.1-4) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.3) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.51.0-1) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up libffi-dev:armhf (3.4.4-1) ...
Setting up libsub-install-perl (0.928-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:armhf (4.8.12-3) ...
Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg1-1.1) ...
Setting up libpfm4:armhf (4.12.1+git6-g8aaaf17-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up autopoint (0.21-10) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up autoconf (2.71-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libdevel-confess-perl (0.009004-3) ...
Setting up libmd0:armhf (1.0.4-2) ...
Setting up libpath-tiny-perl (0.124-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmd-dev:armhf (1.0.4-2) ...
Setting up libipc-run3-perl (0.048-3) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libbsd0:armhf (0.11.7-1) ...
Setting up cdbs (0.4.164) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up libbsd-dev:armhf (0.11.7-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
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Setting up libtool (2.4.7-5) ...
Setting up libedit2:armhf (3.1-20221030-2) ...
Setting up libcurl3-gnutls:armhf (7.87.0-1) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libdata-optlist-perl (0.112-1) ...
Setting up libllvm13:armhf (1:13.0.1-10+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-2) ...
Setting up dwz (0.15-1) ...
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Setting up llvm-13-runtime (1:13.0.1-10+rpi1) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up html-xml-utils (7.7-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up llvm-13-linker-tools (1:13.0.1-10+rpi1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up llvm-13 (1:13.0.1-10+rpi1) ...
Setting up ghc (9.0.2-4+rpi3) ...
update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode
update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode
Setting up libghc-prettyclass-dev (1.0.0.0-10+b1) ...
Setting up libghc-src-exts-dev (1.23.1-3) ...
Setting up libghc-wcwidth-dev (0.0.2-3) ...
Setting up libghc-colour-dev (2.3.6-1+b1) ...
Setting up liblist-someutils-perl (0.58-3) ...
Setting up debhelper (13.11.3) ...
Setting up libghc-unbounded-delays-dev (0.1.1.1-1+b1) ...
Setting up libghc-split-dev (0.2.3.5-1) ...
Setting up libghc-base-compat-dev (0.11.2-1+b1) ...
Setting up libghc-clock-dev (0.8.3-1+b1) ...
Setting up libghc-splitmix-dev (0.1.0.4-1) ...
Setting up libghc-polyparse-dev (1.13-2+b1) ...
Setting up libghc-fgl-dev (5.7.0.3-2) ...
Setting up dh-buildinfo (0.11+nmu2) ...
Setting up libghc-transformers-compat-dev (0.6.6-1+b1) ...
Setting up libghc-dlist-dev (1.0-2+b1) ...
Setting up libghc-tagged-dev (0.8.6.1-1) ...
Setting up haskell-devscripts-minimal (0.16.29) ...
Setting up libghc-hashable-dev (1.3.5.0-2) ...
Setting up libghc-ansi-terminal-dev (0.11.3-1+b1) ...
Setting up libghc-call-stack-dev (0.4.0-1+b1) ...
Setting up libghc-primitive-dev (0.7.3.0-1) ...
Setting up libghc-wl-pprint-text-dev (1.2.0.2-1+b1) ...
Setting up libghc-hierarchical-clustering-dev (0.4.7-2+b1) ...
Setting up libghc-random-dev (1.2.1.1-2) ...
Setting up haskell-devscripts (0.16.29) ...
Setting up libghc-temporary-dev (1.3-3) ...
Setting up libghc-ansi-wl-pprint-dev (0.6.9-5+b1) ...
Setting up libghc-async-dev (2.2.4-1) ...
Setting up libghc-hunit-dev (1.6.2.0-1) ...
Setting up libghc-vector-dev (0.12.3.1-1) ...
Setting up libghc-graphviz-dev (2999.20.1.0-1+b1) ...
Setting up libghc-optparse-applicative-dev (0.16.1.0-1) ...
Setting up libghc-tasty-dev (1.4.2.3-1+b1) ...
Setting up libghc-tasty-th-dev (0.1.7-5+b1) ...
Setting up libghc-tasty-hunit-dev (0.10.0.3-1+b1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 cdbs_0.4.164 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.80 debhelper_13.11.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-buildinfo_0.11+nmu2 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 ghc_9.0.2-4+rpi3 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 haskell-devscripts_0.16.29 haskell-devscripts-minimal_0.16.29 hostname_3.23 hscolour_1.24.4-4+b1 html-xml-utils_7.7-1.1 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-10+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39.50.20221208-5+rpi1 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b2 libbsd-dev_0.11.7-1 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libcom-err2_1.46.6~rc1-1 libconst-fast-perl_0.014-2 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libcurl3-gnutls_7.87.0-1 libdata-optlist-perl_0.112-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.3 libdevel-callchecker-perl_0.008-2 libdevel-confess-perl_0.009004-3 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-3 libedit2_3.1-20221030-2 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi-dev_3.4.4-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libghc-ansi-terminal-dev_0.11.3-1+b1 libghc-ansi-wl-pprint-dev_0.6.9-5+b1 libghc-async-dev_2.2.4-1 libghc-base-compat-dev_0.11.2-1+b1 libghc-call-stack-dev_0.4.0-1+b1 libghc-clock-dev_0.8.3-1+b1 libghc-colour-dev_2.3.6-1+b1 libghc-dlist-dev_1.0-2+b1 libghc-fgl-dev_5.7.0.3-2 libghc-graphviz-dev_2999.20.1.0-1+b1 libghc-hashable-dev_1.3.5.0-2 libghc-hierarchical-clustering-dev_0.4.7-2+b1 libghc-hunit-dev_1.6.2.0-1 libghc-optparse-applicative-dev_0.16.1.0-1 libghc-polyparse-dev_1.13-2+b1 libghc-prettyclass-dev_1.0.0.0-10+b1 libghc-primitive-dev_0.7.3.0-1 libghc-random-dev_1.2.1.1-2 libghc-split-dev_0.2.3.5-1 libghc-splitmix-dev_0.1.0.4-1 libghc-src-exts-dev_1.23.1-3 libghc-tagged-dev_0.8.6.1-1 libghc-tasty-dev_1.4.2.3-1+b1 libghc-tasty-hunit-dev_0.10.0.3-1+b1 libghc-tasty-th-dev_0.1.7-5+b1 libghc-temporary-dev_1.3-3 libghc-transformers-compat-dev_0.6.6-1+b1 libghc-unbounded-delays-dev_0.1.1.1-1+b1 libghc-vector-dev_0.12.3.1-1 libghc-wcwidth-dev_0.0.2-3 libghc-wl-pprint-text-dev_1.2.0.2-1+b1 libgmp-dev_2:6.2.1+dfsg1-1.1 libgmp10_2:6.2.1+dfsg1-1.1 libgmpxx4ldbl_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-10+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libipc-run3-perl_0.048-3 libisl23_0.25-1 libjansson4_2.14-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 liblist-someutils-perl_0.58-3 libllvm13_1:13.0.1-10+rpi1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd-dev_1.0.4-2 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-perl_0.016-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpath-tiny-perl_0.124-1 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.32_5.32.1-6 libperl5.36_5.36.0-6 libpfm4_4.12.1+git6-g8aaaf17-1 libpipeline1_1.5.7-1 libpsl5_0.21.0-1.2 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-3 libsub-install-perl_0.928-3 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunicode-utf8-perl_0.62-2 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libz3-4_4.8.12-3 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 llvm-13_1:13.0.1-10+rpi1 llvm-13-linker-tools_1:13.0.1-10+rpi1 llvm-13-runtime_1:13.0.1-10+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.32_5.32.1-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: phybin
Binary: phybin
Architecture: any
Version: 0.3-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/phybin
Vcs-Git: https://salsa.debian.org/med-team/phybin.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-tasty-dev, libghc-tasty-hunit-dev, libghc-tasty-th-dev
Package-List:
phybin deb science optional arch=any
Checksums-Sha1:
f7f19054d67009425082a1a8d8492cc57c55b85c 111501 phybin_0.3.orig.tar.gz
c40d507564799a6be98cca1f1464d4a0ca6c3be3 7276 phybin_0.3-6.debian.tar.xz
Checksums-Sha256:
45463b4bb65df8fb090eebff8d4340703104dc4a19c61a1eb27ebe8441ef07e0 111501 phybin_0.3.orig.tar.gz
ef733f59217afe811e33f4affdeeaffb00707b37f77057908e9e331f35a7dadb 7276 phybin_0.3-6.debian.tar.xz
Files:
4011a17b976241f48cfd3f8cf04070db 111501 phybin_0.3.orig.tar.gz
f2da57028bb3818c633db0a0de338f13 7276 phybin_0.3-6.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY659xQAKCRAqJ5BL1yQ+
2pnAAQD1QgDmPXyH/yWptK6F8DBMXwyyDnmfozRAoNjoro73kAD9E+/FaX+e1wf5
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-----END PGP SIGNATURE-----
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.DaDOeDTC/trustedkeys.kbx': General error
gpgv: Signature made Fri Dec 30 05:57:25 2022 UTC
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./phybin_0.3-6.dsc
dpkg-source: info: extracting phybin in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking phybin_0.3.orig.tar.gz
dpkg-source: info: unpacking phybin_0.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying unconstraint-text-dependency.patch
dpkg-source: info: applying unsafeIOToST.patch
dpkg-source: info: applying ghc-8.6.patch
dpkg-source: info: applying switch-to-tasty.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=f6531457acff44088f965ef4ced20cd2
JOURNAL_STREAM=8:31902
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-a800d421-2dca-4769-a2ec-f715703e7d9a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c26073
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package phybin
dpkg-buildpackage: info: source version 0.3-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
test -x debian/rules
dh_clean
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'clean_recipe'
Running rm -rf dist dist-ghc dist-ghcjs dist-hugs
Running rm -f debian/hlibrary.setup
Running rm -f Setup.hi Setup.ho Setup.o
Running rm -f
rm -f configure-ghc-stamp
rm -f build-ghc-stamp build-hugs-stamp build-haddock-stamp
rm -f check-ghc-stamp
rm -f debian/tmp
rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs
rm -rf debian/tmp-db
rm -f debian/hlibrary.Makefile
debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85
CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'make_setup_recipe'
Running ghc --make Setup.hs -o debian/hlibrary.setup
[1 of 1] Compiling Main ( Setup.hs, Setup.o )
Linking debian/hlibrary.setup ...
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'configure_recipe'
Running find . ! -newer /tmp/1C3IsiD9F4 -exec touch -d 1998-01-01 UTC {} ;
Running dh_listpackages
phybin
Running dh_listpackages
phybin
Running dpkg-buildflags --get LDFLAGS
-Wl,-z,relro
Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl,-z,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests
Running Setup.hs ...
Using Parsec parser
Configuring phybin-0.3...
Flags chosen: bitvec=False, hashrf=True, sequential=False
Dependency HUnit: using HUnit-1.6.2.0
Dependency async: using async-2.2.4
Dependency base >=3 && <5: using base-4.15.1.0
Dependency bytestring: using bytestring-0.10.12.1
Dependency containers: using containers-0.6.4.1
Dependency directory: using directory-1.3.6.2
Dependency fgl: using fgl-5.7.0.3
Dependency filepath: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.1.0
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency prettyclass: using prettyclass-1.0.0.0
Dependency process: using process-1.6.13.2
Dependency split >=0.2: using split-0.2.3.5
Dependency text: using text-1.2.5.0
Dependency time: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.3.1
Dependency HUnit: using HUnit-1.6.2.0
Dependency async: using async-2.2.4
Dependency base >=3 && <5: using base-4.15.1.0
Dependency bytestring: using bytestring-0.10.12.1
Dependency containers: using containers-0.6.4.1
Dependency directory: using directory-1.3.6.2
Dependency fgl: using fgl-5.7.0.3
Dependency filepath: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.1.0
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency phybin: using phybin-0.3
Dependency prettyclass: using prettyclass-1.0.0.0
Dependency process: using process-1.6.13.2
Dependency split >=0.2: using split-0.2.3.5
Dependency text: using text-1.2.5.0
Dependency time: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.3.1
Dependency HUnit: using HUnit-1.6.2.0
Dependency async: using async-2.2.4
Dependency base >=3 && <5: using base-4.15.1.0
Dependency bytestring: using bytestring-0.10.12.1
Dependency containers: using containers-0.6.4.1
Dependency directory: using directory-1.3.6.2
Dependency fgl: using fgl-5.7.0.3
Dependency filepath: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.1.0
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency prettyclass: using prettyclass-1.0.0.0
Dependency process: using process-1.6.13.2
Dependency split >=0.2: using split-0.2.3.5
Dependency tasty-hunit: using tasty-hunit-0.10.0.3
Dependency tasty-th: using tasty-th-0.1.7
Dependency text: using text-1.2.5.0
Dependency time: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.3.1
Source component graph:
component test:test-phybin
component lib
component exe:phybin dependency lib
Configured component graph:
component phybin-0.3-9Oj6qkHD6ADV8IVwMrJsB-test-phybin
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include tasty-hunit-0.10.0.3-FakCucTvSaNIoDOmxS2SdO
include tasty-th-0.1.7-FcErMEtIfNbIfIRgrmkphH
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
component phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
component phybin-0.3-AVD0JLPnut3996MIbTniv-phybin
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
Linked component graph:
unit phybin-0.3-9Oj6qkHD6ADV8IVwMrJsB-test-phybin
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include tasty-hunit-0.10.0.3-FakCucTvSaNIoDOmxS2SdO
include tasty-th-0.1.7-FcErMEtIfNbIfIRgrmkphH
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
unit phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
Bio.Phylogeny.PhyBin=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp:Bio.Phylogeny.PhyBin.Visualize
unit phybin-0.3-AVD0JLPnut3996MIbTniv-phybin
include HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
include async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
include base-4.15.1.0
include bytestring-0.10.12.1
include containers-0.6.4.1
include directory-1.3.6.2
include fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
include filepath-1.4.2.1
include graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
include hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
include parsec-3.1.14.0
include phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
include prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
include process-1.6.13.2
include split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
include text-1.2.5.0
include time-1.9.3
include vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
Ready component graph:
definite phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
depends HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
depends async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
depends base-4.15.1.0
depends bytestring-0.10.12.1
depends containers-0.6.4.1
depends directory-1.3.6.2
depends fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
depends filepath-1.4.2.1
depends graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
depends hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
depends parsec-3.1.14.0
depends prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
depends process-1.6.13.2
depends split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
depends text-1.2.5.0
depends time-1.9.3
depends vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
definite phybin-0.3-AVD0JLPnut3996MIbTniv-phybin
depends HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
depends async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
depends base-4.15.1.0
depends bytestring-0.10.12.1
depends containers-0.6.4.1
depends directory-1.3.6.2
depends fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
depends filepath-1.4.2.1
depends graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
depends hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
depends parsec-3.1.14.0
depends phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
depends prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
depends process-1.6.13.2
depends split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
depends text-1.2.5.0
depends time-1.9.3
depends vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
definite phybin-0.3-9Oj6qkHD6ADV8IVwMrJsB-test-phybin
depends HUnit-1.6.2.0-6A7GkX10OfW69odZH6xHBm
depends async-2.2.4-ENV3fyyU7vj5F6vRqPBI14
depends base-4.15.1.0
depends bytestring-0.10.12.1
depends containers-0.6.4.1
depends directory-1.3.6.2
depends fgl-5.7.0.3-Li8SHU8U7FhEr6od07HBN9
depends filepath-1.4.2.1
depends graphviz-2999.20.1.0-J2Z2yu5CuzfKaQIdF5ukfB
depends hierarchical-clustering-0.4.7-IZyH7eBTY9mDVsik1X5Cg4
depends parsec-3.1.14.0
depends prettyclass-1.0.0.0-AJqrHIdddTvAkVxD2LfKcX
depends process-1.6.13.2
depends split-0.2.3.5-DXkzOmykyJE7KmI3yfeZnL
depends tasty-hunit-0.10.0.3-FakCucTvSaNIoDOmxS2SdO
depends tasty-th-0.1.7-FcErMEtIfNbIfIRgrmkphH
depends text-1.2.5.0
depends time-1.9.3
depends vector-0.12.3.1-TXkE6leK98EdYcmdk29JF
Using Cabal-3.4.1.0 compiled by ghc-9.0
Using compiler: ghc-9.0.2
Using install prefix: /usr
Executables installed in: /usr/bin
Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.0.2/phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
Dynamic Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.0.2
Private executables installed in: /usr/lib/arm-linux-ghc-9.0.2/phybin-0.3
Data files installed in: /usr/share/phybin
Documentation installed in: /usr/share/doc/arm-linux-ghc-9.0.2/phybin-0.3
Configuration files installed in: /usr/etc
No alex found
Using ar found on system at: /usr/bin/arm-linux-gnueabihf-ar
No c2hs found
No cpphs found
No doctest found
Using gcc version 12 found on system at: /usr/bin/arm-linux-gnueabihf-gcc
Using ghc version 9.0.2 found on system at: /usr/bin/ghc
Using ghc-pkg version 9.0.2 found on system at: /usr/bin/ghc-pkg
No ghcjs found
No ghcjs-pkg found
No greencard found
Using haddock version 2.25.1 found on system at: /usr/bin/haddock
No happy found
Using haskell-suite found on system at: haskell-suite-dummy-location
Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location
No hmake found
Using hpc version 0.68 found on system at: /usr/bin/hpc
Using hsc2hs version 0.68.7 found on system at: /usr/bin/hsc2hs
Using hscolour version 1.24 found on system at: /usr/bin/HsColour
No jhc found
Using ld found on system at: /usr/bin/arm-linux-gnueabihf-ld.gold
No pkg-config found
Using runghc version 9.0.2 found on system at: /usr/bin/runghc
Using strip version 2.39 found on system at: /usr/bin/strip
Using tar found on system at: /bin/tar
No uhc found
touch configure-ghc-stamp
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'build_recipe'
Running dh_listpackages
phybin
Running Setup.hs ...
Preprocessing library for phybin-0.3..
Building library for phybin-0.3..
[1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of ‘Data.Set’ is redundant
except perhaps to import instances from ‘Data.Set’
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of ‘Data.Foldable’ is redundant
except perhaps to import instances from ‘Data.Foldable’
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of ‘Data.Monoid’ is redundant
except perhaps to import instances from ‘Data.Monoid’
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.dyn_o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for ‘loop2’:
Patterns not matched:
(Data.Map.Internal.Bin _ _ _ _ _) (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
(Data.Map.Internal.Bin _ _ _ _ _) Data.Map.Internal.Tip
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip Data.Map.Internal.Tip (NTLeaf (_, Nothing) _)
...
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
NTInterior ((_, _), (Just _)) []
NTInterior ((_, _), (Just _)) (_:_)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.dyn_o )
[4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.dyn_o )
[5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.dyn_o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.dyn_o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.dyn_o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o, dist-ghc/build/Bio/Phylogeny/PhyBin.dyn_o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of ‘delete, intersperse, minimumBy’
from module ‘Data.List’ is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports]
The import of ‘filterM’ from module ‘Control.Monad’ is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of ‘Control.Concurrent’ is redundant
except perhaps to import instances from ‘Control.Concurrent’
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of ‘doesFileExist, getDirectoryContents’
from module ‘System.Directory’ is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of ‘hClose, openFile’
from module ‘System.IO’ is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of ‘System.Exit’ is redundant
except perhaps to import instances from ‘System.Exit’
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of ‘Test.HUnit’ is redundant
except perhaps to import instances from ‘Test.HUnit’
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of ‘Data.GraphViz’ is redundant
except perhaps to import instances from ‘Data.GraphViz’
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of ‘Data.GraphViz.Printing’ is redundant
except perhaps to import instances from ‘Data.GraphViz.Printing’
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports]
The import of ‘viewNewickTree’
from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
Preprocessing executable 'phybin' for phybin-0.3..
Building executable 'phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
[ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of ‘Data.Set’ is redundant
except perhaps to import instances from ‘Data.Set’
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of ‘Data.Foldable’ is redundant
except perhaps to import instances from ‘Data.Foldable’
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of ‘Data.Monoid’ is redundant
except perhaps to import instances from ‘Data.Monoid’
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for ‘loop2’:
Patterns not matched:
(Data.Map.Internal.Bin _ _ _ _ _) (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
(Data.Map.Internal.Bin _ _ _ _ _) Data.Map.Internal.Tip
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip Data.Map.Internal.Tip (NTLeaf (_, Nothing) _)
...
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
NTInterior ((_, _), (Just _)) []
NTInterior ((_, _), (Just _)) (_:_)
|
122 | case s of
| ^^^^^^^^^^...
[ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o )
[ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o )
[ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of ‘delete, intersperse, minimumBy’
from module ‘Data.List’ is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports]
The import of ‘filterM’ from module ‘Control.Monad’ is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of ‘Control.Concurrent’ is redundant
except perhaps to import instances from ‘Control.Concurrent’
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of ‘doesFileExist, getDirectoryContents’
from module ‘System.Directory’ is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of ‘hClose, openFile’
from module ‘System.IO’ is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of ‘System.Exit’ is redundant
except perhaps to import instances from ‘System.Exit’
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of ‘Test.HUnit’ is redundant
except perhaps to import instances from ‘Test.HUnit’
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of ‘Data.GraphViz’ is redundant
except perhaps to import instances from ‘Data.GraphViz’
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of ‘Data.GraphViz.Printing’ is redundant
except perhaps to import instances from ‘Data.GraphViz.Printing’
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports]
The import of ‘viewNewickTree’
from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o )
[10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o )
Main.hs:151:1: warning: [-Wtabs]
Tab character found here, and in 66 further locations.
Please use spaces instead.
|
151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++
| ^^^^^^^^
Main.hs:263:14: warning:
accepting non-standard pattern guards (use PatternGuards to suppress this message)
Expected _ <- num_taxa cfg
|
263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant"
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
Linking dist-ghc/build/phybin/phybin ...
Preprocessing test suite 'test-phybin' for phybin-0.3..
Building test suite 'test-phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
[1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of ‘Data.Set’ is redundant
except perhaps to import instances from ‘Data.Set’
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of ‘Data.Foldable’ is redundant
except perhaps to import instances from ‘Data.Foldable’
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of ‘Data.Monoid’ is redundant
except perhaps to import instances from ‘Data.Monoid’
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.dyn_o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for ‘loop2’:
Patterns not matched:
(Data.Map.Internal.Bin _ _ _ _ _) (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
(Data.Map.Internal.Bin _ _ _ _ _) Data.Map.Internal.Tip
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip (Data.Map.Internal.Bin _ _ _ _ _)
(NTLeaf (_, Nothing) _)
Data.Map.Internal.Tip Data.Map.Internal.Tip (NTLeaf (_, Nothing) _)
...
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched:
NTInterior ((_, _), (Just _)) []
NTInterior ((_, _), (Just _)) (_:_)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.dyn_o )
[4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.dyn_o )
[5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.dyn_o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.dyn_o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.dyn_o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.dyn_o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of ‘delete, intersperse, minimumBy’
from module ‘Data.List’ is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports]
The import of ‘filterM’ from module ‘Control.Monad’ is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of ‘Control.Applicative’ is redundant
except perhaps to import instances from ‘Control.Applicative’
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of ‘Control.Concurrent’ is redundant
except perhaps to import instances from ‘Control.Concurrent’
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of ‘doesFileExist, getDirectoryContents’
from module ‘System.Directory’ is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of ‘hClose, openFile’
from module ‘System.IO’ is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of ‘System.Exit’ is redundant
except perhaps to import instances from ‘System.Exit’
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of ‘Test.HUnit’ is redundant
except perhaps to import instances from ‘Test.HUnit’
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of ‘Data.GraphViz’ is redundant
except perhaps to import instances from ‘Data.GraphViz’
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of ‘Data.GraphViz.Printing’ is redundant
except perhaps to import instances from ‘Data.GraphViz.Printing’
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports]
The import of ‘viewNewickTree’
from module ‘Bio.Phylogeny.PhyBin.Visualize’ is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o, dist-ghc/build/test-phybin/test-phybin-tmp/Main.dyn_o )
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Linking dist-ghc/build/test-phybin/test-phybin ...
touch build-ghc-stamp
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'check_recipe'
Running dh_listpackages
phybin
Running Setup.hs ...
Running 1 test suites...
Test suite test-phybin: RUNNING...
Main
t30: OK
All 1 tests passed (0.00s)
Test suite test-phybin: PASS
Test suite logged to: dist-ghc/test/phybin-0.3-test-phybin.log
1 of 1 test suites (1 of 1 test cases) passed.
touch check-ghc-stamp
Adding cdbs dependencies to debian/phybin.substvars
dh_installdirs -pphybin \
dh_haskell_description --package=phybin
Running grep-dctrl --no-field-names --show-field=Description --field=Source --regex .* debian/control
Running grep-dctrl --no-field-names --show-field=X-Description --field=Source --regex .* debian/control
dh_haskell_compiler --package=phybin
Running dpkg-query --showformat=${Version} --show ghc
9.0.2-4+rpi3
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'haddock_recipe'
Running dh_listpackages
phybin
Running debian/hlibrary.setup haddock --builddir=dist-ghc --with-haddock=/usr/bin/haddock --with-ghc=ghc --verbose=2 --html --hoogle --haddock-options="--mathjax=file:///usr/share/javascript/mathjax/MathJax.js" --hyperlink-source
Running Setup.hs ...
/usr/bin/haddock --version
/usr/bin/ghc --numeric-version
/usr/bin/haddock --ghc-version '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js'
/usr/bin/ghc --print-libdir
/usr/bin/ghc-pkg init dist-ghc/package.conf.inplace
creating dist-ghc/build
creating dist-ghc/build/autogen
creating dist-ghc/build/autogen
Preprocessing library for phybin-0.3..
Running Haddock on library for phybin-0.3..
creating dist-ghc/doc/html/phybin
creating dist-ghc/doc/html
creating dist-ghc/doc
creating dist-ghc/doc/html
creating dist-ghc/doc/html/phybin
/usr/bin/haddock '@dist-ghc/doc/html/phybin/haddock-response6564-1.txt' '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js'
Warning: 'normalize' is out of scope.
If you qualify the identifier, haddock can try to link it anyway.
76% ( 26 / 34) in 'Bio.Phylogeny.PhyBin.CoreTypes'
Missing documentation for:
Module header
ClustMode (Bio/Phylogeny/PhyBin/CoreTypes.hs:268)
TreeName (Bio/Phylogeny/PhyBin/CoreTypes.hs:198)
liftFT (Bio/Phylogeny/PhyBin/CoreTypes.hs:195)
get_dec (Bio/Phylogeny/PhyBin/CoreTypes.hs:292)
set_dec (Bio/Phylogeny/PhyBin/CoreTypes.hs:297)
get_children (Bio/Phylogeny/PhyBin/CoreTypes.hs:302)
HasBranchLen (Bio/Phylogeny/PhyBin/CoreTypes.hs:176)
67% ( 4 / 6) in 'Bio.Phylogeny.PhyBin.Parser'
Missing documentation for:
Module header
unitTests (Bio/Phylogeny/PhyBin/Parser.hs:213)
Warning: 'collapser' is out of scope.
If you qualify the identifier, haddock can try to link it anyway.
100% ( 5 / 5) in 'Bio.Phylogeny.PhyBin.PreProcessor'
60% ( 15 / 25) in 'Bio.Phylogeny.PhyBin.RFDistance'
Missing documentation for:
Module header
DistanceMatrix (Bio/Phylogeny/PhyBin/RFDistance.hs:156)
foldBips (Bio/Phylogeny/PhyBin/RFDistance.hs:242)
mkSingleDense (Bio/Phylogeny/PhyBin/RFDistance.hs:139)
mkEmptyDense (Bio/Phylogeny/PhyBin/RFDistance.hs:138)
bipSize (Bio/Phylogeny/PhyBin/RFDistance.hs:141)
denseUnions (Bio/Phylogeny/PhyBin/RFDistance.hs:140)
denseDiff (Bio/Phylogeny/PhyBin/RFDistance.hs:122)
markLabel (Bio/Phylogeny/PhyBin/RFDistance.hs:137)
printDistMat (Bio/Phylogeny/PhyBin/RFDistance.hs:352)
60% ( 3 / 5) in 'Bio.Phylogeny.PhyBin.Util'
Missing documentation for:
is_regular_file (Bio/Phylogeny/PhyBin/Util.hs:73)
sanityCheck (Bio/Phylogeny/PhyBin/Util.hs:133)
88% ( 7 / 8) in 'Bio.Phylogeny.PhyBin.Visualize'
Missing documentation for:
Module header
86% ( 12 / 14) in 'Bio.Phylogeny.PhyBin.Binning'
Missing documentation for:
get_weight (Bio/Phylogeny/PhyBin/Binning.hs:338)
unitTests (Bio/Phylogeny/PhyBin/Binning.hs:380)
90% ( 9 / 10) in 'Bio.Phylogeny.PhyBin'
Missing documentation for:
unitTests (Bio/Phylogeny/PhyBin/Binning.hs:380)
Warning: Bio.Phylogeny.PhyBin.CoreTypes: could not find link destinations for:
- Data.Foldable.Foldable
- GHC.Types.Type
- Data.Foldable.fold
- GHC.Base.Monoid
- Data.Foldable.foldMap
- Data.Foldable.foldMap'
- Data.Foldable.foldr
- Data.Foldable.foldr'
- Data.Foldable.foldl
- Data.Foldable.foldl'
- Data.Foldable.foldr1
- Data.Foldable.foldl1
- Data.Foldable.toList
- Data.Foldable.null
- GHC.Types.Bool
- Data.Foldable.length
- GHC.Types.Int
- Data.Foldable.elem
- GHC.Classes.Eq
- Data.Foldable.maximum
- GHC.Classes.Ord
- Data.Foldable.minimum
- Data.Foldable.sum
- GHC.Num.Num
- Data.Foldable.product
- GHC.Base.Functor
- GHC.Base.fmap
- GHC.Base.<$
- GHC.Show.Show
- GHC.Show.showsPrec
- GHC.Show.ShowS
- GHC.Show.show
- GHC.Base.String
- GHC.Show.showList
- GHC.Classes.==
- GHC.Classes./=
- GHC.Classes.compare
- GHC.Types.Ordering
- GHC.Classes.<
- GHC.Classes.<=
- GHC.Classes.>
- GHC.Classes.>=
- GHC.Classes.max
- GHC.Classes.min
- Text.PrettyPrint.HughesPJClass.Pretty
- Text.PrettyPrint.HughesPJClass.pPrintPrec
- Text.PrettyPrint.HughesPJClass.PrettyLevel
- GHC.Real.Rational
- Text.PrettyPrint.HughesPJ.Doc
- Text.PrettyPrint.HughesPJClass.pPrint
- Text.PrettyPrint.HughesPJClass.pPrintList
- GHC.Maybe.Maybe
- Bio.Phylogeny.PhyBin.CoreTypes.BranchLen
- GHC.Read.Read
- GHC.Read.readsPrec
- Text.ParserCombinators.ReadP.ReadS
- GHC.Read.readList
- GHC.Read.readPrec
- Text.ParserCombinators.ReadPrec.ReadPrec
- GHC.Read.readListPrec
- Data.Clustering.Hierarchical.Internal.Types.Linkage
- GHC.Types.Double
- GHC.IO.FilePath
- Data.Map.Internal.Map
Warning: Bio.Phylogeny.PhyBin.Parser: could not find link destinations for:
- Bio.Phylogeny.PhyBin.Parser.NameHack
- Text.Parsec.ByteString.Parser
- Bio.Phylogeny.PhyBin.Parser.TempTree
- GHC.Base.String
- Data.ByteString.Internal.ByteString
- GHC.Types.IO
- Test.HUnit.Base.Test
Warning: Bio.Phylogeny.PhyBin.PreProcessor: could not find link destinations for:
- GHC.Types.Bool
- GHC.Enum.pred
- GHC.Types.Double
- GHC.Types.Int
- Data.Set.Internal.Set
- GHC.Maybe.Maybe
Warning: Bio.Phylogeny.PhyBin.RFDistance: could not find link destinations for:
- Data.IntSet.Internal.IntSet
- Data.Vector.Vector
- Data.Vector.Unboxed.Base.Vector
- GHC.Types.Int
- Data.Set.Internal.Set
- GHC.Base.Monoid
- GHC.Base.String
- GHC.Types.Bool
- GHC.IO.Handle.Types.Handle
- GHC.Types.IO
- Text.PrettyPrint.HughesPJClass.Pretty
- Text.PrettyPrint.HughesPJClass.pPrintPrec
- Text.PrettyPrint.HughesPJClass.PrettyLevel
- GHC.Real.Rational
- Text.PrettyPrint.HughesPJ.Doc
- Text.PrettyPrint.HughesPJClass.pPrint
- Text.PrettyPrint.HughesPJClass.pPrintList
Warning: Bio.Phylogeny.PhyBin.Util: could not find link destinations for:
- GHC.IO.FilePath
- GHC.Types.IO
- GHC.Types.Bool
- GHC.Base.String
- Data.GraphViz.Types.Canonical.DotGraph
- Data.Graph.Inductive.Graph.Node
- GHC.Maybe.Maybe
- Data.Text.Internal.Lazy.Text
- Data.Clustering.Hierarchical.Internal.Types.Dendrogram
Warning: Bio.Phylogeny.PhyBin.Visualize: could not find link destinations for:
- GHC.Base.String
- GHC.Types.Double
- Data.GraphViz.Types.Canonical.DotGraph
- Data.Graph.Inductive.Graph.Node
- GHC.IO.FilePath
- GHC.Types.IO
- GHC.Maybe.Maybe
- Control.Concurrent.Chan.Chan
- GHC.Types.Int
- Data.Clustering.Hierarchical.Internal.Types.Dendrogram
- Bio.Phylogeny.PhyBin.Visualize.DendroGraph
- Data.Map.Internal.Map
Warning: Bio.Phylogeny.PhyBin.Binning: could not find link destinations for:
- GHC.Show.Show
- GHC.Show.showsPrec
- GHC.Types.Int
- GHC.Show.ShowS
- GHC.Show.show
- GHC.Base.String
- GHC.Show.showList
- Data.Map.Internal.Map
- Test.HUnit.Base.Test
Warning: Bio.Phylogeny.PhyBin: could not find link destinations for:
- GHC.Types.IO
- Test.HUnit.Base.Test
- GHC.Base.String
- GHC.IO.FilePath
- GHC.Types.Bool
Documentation created: dist-ghc/doc/html/phybin/index.html,
dist-ghc/doc/html/phybin/phybin.txt
creating dist-ghc/build/phybin
creating dist-ghc/build/phybin/autogen
creating dist-ghc/build/phybin/autogen
Preprocessing executable 'phybin' for phybin-0.3..
creating dist-ghc/build/test-phybin
creating dist-ghc/build/test-phybin/autogen
creating dist-ghc/build/test-phybin/autogen
Preprocessing test suite 'test-phybin' for phybin-0.3..
touch build-haddock-stamp
perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \
-E 'install_recipe($ARGV[0])' "debian/tmp-inst-ghc"
Running dh_listpackages
phybin
Running debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc
Running Setup.hs ...
Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.0.2/phybin-0.3-HRaROzo3aOkAQ8476Wl4Cp
Installing executable phybin in debian/tmp-inst-ghc/usr/bin
ln --symbolic --force "debian/tmp-inst-ghc" debian/tmp
:
dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin
dh_installdocs -pphybin
dh_installexamples -pphybin
dh_installman -pphybin
dh_installinfo -pphybin
dh_installmenu -pphybin
dh_installcron -pphybin
dh_systemd_enable -pphybin
dh_installinit -pphybin
dh_installdebconf -pphybin
dh_installemacsen -pphybin
dh_installcatalogs -pphybin
dh_installpam -pphybin
dh_installlogrotate -pphybin
dh_installlogcheck -pphybin
dh_installchangelogs -pphybin
dh_installudev -pphybin
dh_lintian -pphybin
dh_bugfiles -pphybin
dh_install -pphybin
dh_systemd_start -pphybin
dh_link -pphybin
dh_buildinfo -pphybin
dh_installmime -pphybin
dh_installgsettings -pphybin
dh_strip -pphybin --no-automatic-dbgsym
dh_strip_nondeterminism -pphybin
dh_compress -pphybin -X .haddock -X .hs -X .txt
dh_fixperms -pphybin
dh_makeshlibs -pphybin -XlibHS
dh_installdeb -pphybin
dh_perl -pphybin
dh_shlibdeps -pphybin -- --ignore-missing-info
dh_gencontrol -pphybin
dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined
dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined
dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined
dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined
dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined
dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined
dh_md5sums -pphybin
dh_builddeb -pphybin
dpkg-deb: building package 'phybin' in '../phybin_0.3-6_armhf.deb'.
dpkg-genbuildinfo --build=any -O../phybin_0.3-6_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../phybin_0.3-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-01-02T00:28:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
phybin_0.3-6_armhf.changes:
---------------------------
Format: 1.8
Date: Fri, 30 Dec 2022 11:19:03 +0530
Source: phybin
Binary: phybin
Architecture: armhf
Version: 0.3-6
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
phybin - binning/clustering newick trees by topology
Changes:
phybin (0.3-6) unstable; urgency=medium
.
* Team Upload.
* Add patch to switch test deps from framework -> tasty.
* B-D on tasty related packages instead of framework.
Checksums-Sha1:
a2a762e13eebe00b807f8df2c70713bef16d9778 7816 phybin_0.3-6_armhf.buildinfo
7aca445007d0a3a3083a670a08c60694f191cb43 4550836 phybin_0.3-6_armhf.deb
Checksums-Sha256:
303b6dd1f8f18c66faaa32adf1a57699313bbe5401563efaf14343a9006aa160 7816 phybin_0.3-6_armhf.buildinfo
9d3a17ba9c8810a0c3eeff1dc8864e32465e46b43bda859c8cf030a6fa6e01f9 4550836 phybin_0.3-6_armhf.deb
Files:
42ded7d60a8b2d7a1e8c0b5760c9c68a 7816 science optional phybin_0.3-6_armhf.buildinfo
a337803f1dbb4ff2dbbaa90f8541f0d8 4550836 science optional phybin_0.3-6_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: phybin
Binary: phybin
Architecture: armhf
Version: 0.3-6
Checksums-Md5:
a337803f1dbb4ff2dbbaa90f8541f0d8 4550836 phybin_0.3-6_armhf.deb
Checksums-Sha1:
7aca445007d0a3a3083a670a08c60694f191cb43 4550836 phybin_0.3-6_armhf.deb
Checksums-Sha256:
9d3a17ba9c8810a0c3eeff1dc8864e32465e46b43bda859c8cf030a6fa6e01f9 4550836 phybin_0.3-6_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 02 Jan 2023 00:28:09 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-10),
autotools-dev (= 20220109.1),
base-files (= 12.3+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2-2),
binutils (= 2.39.50.20221208-5+rpi1),
binutils-arm-linux-gnueabihf (= 2.39.50.20221208-5+rpi1),
binutils-common (= 2.39.50.20221208-5+rpi1),
bsdextrautils (= 2.38.1-4),
bsdutils (= 1:2.38.1-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
cdbs (= 0.4.164),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-10+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
dctrl-tools (= 2.24-3),
debconf (= 1.5.80),
debhelper (= 13.11.3),
debianutils (= 5.7-0.4),
dh-autoreconf (= 20),
dh-buildinfo (= 0.11+nmu2),
dh-strip-nondeterminism (= 1.13.0-2),
diffutils (= 1:3.8-1),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.15-1),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
g++ (= 4:12.2.0-1+rpi1),
g++-12 (= 12.2.0-10+rpi1),
gcc (= 4:12.2.0-1+rpi1),
gcc-12 (= 12.2.0-10+rpi1),
gcc-12-base (= 12.2.0-10+rpi1),
gettext (= 0.21-10),
gettext-base (= 0.21-10),
ghc (= 9.0.2-4+rpi3),
grep (= 3.8-3),
groff-base (= 1.22.4-9),
gzip (= 1.12-1),
haskell-devscripts (= 0.16.29),
haskell-devscripts-minimal (= 0.16.29),
hostname (= 3.23),
hscolour (= 1.24.4-4+b1),
html-xml-utils (= 7.7-1.1),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-10+rpi1),
libatomic1 (= 12.2.0-10+rpi1),
libattr1 (= 1:2.5.1-3),
libaudit-common (= 1:3.0.7-1.1),
libaudit1 (= 1:3.0.7-1.1),
libb-hooks-op-check-perl (= 0.22-2+b1),
libbinutils (= 2.39.50.20221208-5+rpi1),
libblkid1 (= 2.38.1-4),
libbrotli1 (= 1.0.9-2+b2),
libbsd-dev (= 0.11.7-1),
libbsd0 (= 0.11.7-1),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.36-6+rpi1),
libc-dev-bin (= 2.36-6+rpi1),
libc6 (= 2.36-6+rpi1),
libc6-dev (= 2.36-6+rpi1),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-10+rpi1),
libcom-err2 (= 1.46.6~rc1-1),
libconst-fast-perl (= 0.014-2),
libcrypt-dev (= 1:4.4.33-1),
libcrypt1 (= 1:4.4.33-1),
libctf-nobfd0 (= 2.39.50.20221208-5+rpi1),
libctf0 (= 2.39.50.20221208-5+rpi1),
libcurl3-gnutls (= 7.87.0-1),
libdata-optlist-perl (= 0.112-1),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.265),
libdebhelper-perl (= 13.11.3),
libdevel-callchecker-perl (= 0.008-2),
libdevel-confess-perl (= 0.009004-3),
libdpkg-perl (= 1.21.9+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libedit2 (= 3.1-20221030-2),
libelf1 (= 0.187-2+rpi2),
libffi-dev (= 3.4.4-1),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.0-2),
libgcc-12-dev (= 12.2.0-10+rpi1),
libgcc-s1 (= 12.2.0-10+rpi1),
libgcrypt20 (= 1.10.1-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libghc-ansi-terminal-dev (= 0.11.3-1+b1),
libghc-ansi-wl-pprint-dev (= 0.6.9-5+b1),
libghc-async-dev (= 2.2.4-1),
libghc-base-compat-dev (= 0.11.2-1+b1),
libghc-call-stack-dev (= 0.4.0-1+b1),
libghc-clock-dev (= 0.8.3-1+b1),
libghc-colour-dev (= 2.3.6-1+b1),
libghc-dlist-dev (= 1.0-2+b1),
libghc-fgl-dev (= 5.7.0.3-2),
libghc-graphviz-dev (= 2999.20.1.0-1+b1),
libghc-hashable-dev (= 1.3.5.0-2),
libghc-hierarchical-clustering-dev (= 0.4.7-2+b1),
libghc-hunit-dev (= 1.6.2.0-1),
libghc-optparse-applicative-dev (= 0.16.1.0-1),
libghc-polyparse-dev (= 1.13-2+b1),
libghc-prettyclass-dev (= 1.0.0.0-10+b1),
libghc-primitive-dev (= 0.7.3.0-1),
libghc-random-dev (= 1.2.1.1-2),
libghc-split-dev (= 0.2.3.5-1),
libghc-splitmix-dev (= 0.1.0.4-1),
libghc-src-exts-dev (= 1.23.1-3),
libghc-tagged-dev (= 0.8.6.1-1),
libghc-tasty-dev (= 1.4.2.3-1+b1),
libghc-tasty-hunit-dev (= 0.10.0.3-1+b1),
libghc-tasty-th-dev (= 0.1.7-5+b1),
libghc-temporary-dev (= 1.3-3),
libghc-transformers-compat-dev (= 0.6.6-1+b1),
libghc-unbounded-delays-dev (= 0.1.1.1-1+b1),
libghc-vector-dev (= 0.12.3.1-1),
libghc-wcwidth-dev (= 0.0.2-3),
libghc-wl-pprint-text-dev (= 1.2.0.2-1+b1),
libgmp-dev (= 2:6.2.1+dfsg1-1.1),
libgmp10 (= 2:6.2.1+dfsg1-1.1),
libgmpxx4ldbl (= 2:6.2.1+dfsg1-1.1),
libgnutls30 (= 3.7.8-4),
libgomp1 (= 12.2.0-10+rpi1),
libgpg-error0 (= 1.46-1),
libgssapi-krb5-2 (= 1.20.1-1),
libhogweed6 (= 3.8.1-2),
libicu72 (= 72.1-3),
libidn2-0 (= 2.3.3-1),
libipc-run3-perl (= 0.048-3),
libisl23 (= 0.25-1),
libjansson4 (= 2.14-2),
libk5crypto3 (= 1.20.1-1),
libkeyutils1 (= 1.6.3-1),
libkrb5-3 (= 1.20.1-1),
libkrb5support0 (= 1.20.1-1),
libldap-2.5-0 (= 2.5.13+dfsg-2+rpi1+b1),
liblist-someutils-perl (= 0.58-3),
libllvm13 (= 1:13.0.1-10+rpi1),
liblz4-1 (= 1.9.4-1+rpi1),
liblzma5 (= 5.4.0-0.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmd-dev (= 1.0.4-2),
libmd0 (= 1.0.4-2),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-perl (= 0.016-2),
libmount1 (= 2.38.1-4),
libmpc3 (= 1.2.1-2),
libmpfr6 (= 4.1.0-3),
libncurses-dev (= 6.3+20220423-2),
libncurses6 (= 6.3+20220423-2),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnghttp2-14 (= 1.51.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpam-modules (= 1.5.2-5),
libpam-modules-bin (= 1.5.2-5),
libpam-runtime (= 1.5.2-5),
libpam0g (= 1.5.2-5),
libparams-classify-perl (= 0.015-2+b1),
libparams-util-perl (= 1.102-2+b1),
libpath-tiny-perl (= 0.124-1),
libpcre2-8-0 (= 10.40-3),
libperl5.36 (= 5.36.0-6),
libpfm4 (= 4.12.1+git6-g8aaaf17-1),
libpipeline1 (= 1.5.7-1),
libpsl5 (= 0.21.0-1.2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-10),
libsasl2-modules-db (= 2.1.28+dfsg-10),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsmartcols1 (= 2.38.1-4),
libssh2-1 (= 1.10.0-3+b1),
libssl3 (= 3.0.7-1),
libstdc++-12-dev (= 12.2.0-10+rpi1),
libstdc++6 (= 12.2.0-10+rpi1),
libsub-exporter-perl (= 0.988-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-install-perl (= 0.928-3),
libsub-override-perl (= 0.09-4),
libsystemd0 (= 252.2-1+rpi1),
libtasn1-6 (= 4.19.0-2),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-5),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 12.2.0-10+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 252.2-1+rpi1),
libunicode-utf8-perl (= 0.62-2),
libunistring2 (= 1.0-2),
libuuid1 (= 2.38.1-4),
libxml2 (= 2.9.14+dfsg-1.1),
libz3-4 (= 4.8.12-3),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 6.0.12-1+rpi1),
llvm-13 (= 1:13.0.1-10+rpi1),
llvm-13-linker-tools (= 1:13.0.1-10+rpi1),
llvm-13-runtime (= 1:13.0.1-10+rpi1),
login (= 1:4.13+dfsg1-1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.11.1-1),
mawk (= 1.3.4.20200120-3.1),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
patch (= 2.7.6-7),
perl (= 5.36.0-6),
perl-base (= 5.36.0-6),
perl-modules-5.36 (= 5.36.0-6),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.31),
sysvinit-utils (= 3.05-7),
tar (= 1.34+dfsg-1),
util-linux (= 2.38.1-4),
util-linux-extra (= 2.38.1-4),
xz-utils (= 5.4.0-0.1),
zlib1g (= 1:1.2.13.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1672379343"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
phybin_0.3-6_armhf.deb
----------------------
new Debian package, version 2.0.
size 4550836 bytes: control archive=1044 bytes.
932 bytes, 20 lines control
397 bytes, 6 lines md5sums
Package: phybin
Version: 0.3-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 28528
Depends: libatomic1 (>= 4.8), libc6 (>= 2.34), libffi8 (>= 3.4), libgmp10 (>= 2:6.2.1+dfsg1)
Section: science
Priority: optional
Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/
Description: binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).
drwxr-xr-x root/root 0 2022-12-30 05:49 ./
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/bin/
-rwxr-xr-x root/root 29187888 2022-12-30 05:49 ./usr/bin/phybin
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/doc/phybin/
-rw-r--r-- root/root 4232 2022-12-30 05:49 ./usr/share/doc/phybin/buildinfo_armhf.gz
-rw-r--r-- root/root 710 2022-12-30 05:49 ./usr/share/doc/phybin/changelog.Debian.gz
-rw-r--r-- root/root 2692 2022-12-30 04:59 ./usr/share/doc/phybin/copyright
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/lintian/
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 27 2022-12-30 04:59 ./usr/share/lintian/overrides/phybin
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/man/
drwxr-xr-x root/root 0 2022-12-30 05:49 ./usr/share/man/man1/
-rw-r--r-- root/root 2293 2022-12-30 05:49 ./usr/share/man/man1/phybin.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 279592
Build-Time: 638
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 686
Job: phybin_0.3-6
Machine Architecture: armhf
Package: phybin
Package-Time: 1355
Source-Version: 0.3-6
Space: 279592
Status: successful
Version: 0.3-6
--------------------------------------------------------------------------------
Finished at 2023-01-02T00:28:10Z
Build needed 00:22:35, 279592k disk space