phybin →
0.3-5+b1 →
armhf → 2021-10-03 08:39:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| phybin 0.3-5+b1 (armhf) Sun, 03 Oct 2021 07:54:40 +0000 |
+==============================================================================+
Package: phybin
Version: 0.3-5+b1
Source Version: 0.3-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-1c0edd26-cd1e-4bc0-bba2-2e6c14409f4f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 26s (1004 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'phybin' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/phybin.git
Please use:
git clone https://salsa.debian.org/med-team/phybin.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 121 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main phybin 0.3-5 (dsc) [2268 B]
Get:2 http://172.17.0.1/private bookworm-staging/main phybin 0.3-5 (tar) [112 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main phybin 0.3-5 (diff) [6852 B]
Fetched 121 kB in 1s (194 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/phybin-lTiUev/phybin-0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/phybin-lTiUev' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZKDRd2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZKDRd2/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2840 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev
Filtered Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev
dpkg-deb: building package 'sbuild-build-depends-phybin-dummy' in '/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive/sbuild-build-depends-phybin-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-phybin-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Sources [608 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ Packages [688 B]
Fetched 2629 B in 1s (3456 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install phybin build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cdbs dctrl-tools
debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz file
gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libbrotli1 libbsd-dev libbsd0 libcurl3-gnutls
libdebhelper-perl libedit2 libelf1 libffi-dev libffi8
libfile-stripnondeterminism-perl libghc-ansi-terminal-dev
libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev
libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev
libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev
libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev
libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev
libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-regex-base-dev
libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev
libghc-temporary-dev libghc-test-framework-dev
libghc-test-framework-hunit-dev libghc-test-framework-th-dev
libghc-vector-dev libghc-wl-pprint-text-dev libghc-xml-dev libgmp-dev
libgmpxx4ldbl libicu67 libllvm11 libmagic-mgc libmagic1 libmd-dev libmd0
libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpfm4
libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libxml2 libz3-4 llvm-11 llvm-11-linker-tools
llvm-11-runtime m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc devscripts debtags dh-make
gettext-doc libasprintf-dev libgettextpo-dev ghc-prof ghc-doc haskell-doc
groff libghc-ansi-terminal-doc libghc-ansi-terminal-prof
libghc-ansi-wl-pprint-doc libghc-ansi-wl-pprint-prof libghc-async-doc
libghc-async-prof libghc-base-compat-doc libghc-base-compat-prof
libghc-call-stack-doc libghc-call-stack-prof libghc-colour-doc
libghc-colour-prof libghc-dlist-doc libghc-dlist-prof libghc-exceptions-doc
libghc-exceptions-prof libghc-extensible-exceptions-doc
libghc-extensible-exceptions-prof libghc-fgl-doc libghc-fgl-prof
libghc-graphviz-doc libghc-graphviz-prof libghc-hashable-doc
libghc-hashable-prof libghc-hierarchical-clustering-doc
libghc-hierarchical-clustering-prof libghc-hostname-doc libghc-hostname-prof
libghc-hunit-doc libghc-hunit-prof libghc-language-haskell-extract-doc
libghc-language-haskell-extract-prof libghc-old-locale-doc
libghc-old-locale-prof libghc-polyparse-doc libghc-polyparse-prof
libghc-prettyclass-doc libghc-prettyclass-prof libghc-primitive-doc
libghc-primitive-prof libghc-random-doc libghc-random-prof
libghc-regex-base-doc libghc-regex-base-prof libghc-regex-posix-doc
libghc-regex-posix-prof libghc-split-doc libghc-split-prof
libghc-src-exts-doc libghc-src-exts-prof libghc-temporary-doc
libghc-temporary-prof libghc-test-framework-doc libghc-test-framework-prof
libghc-test-framework-hunit-doc libghc-test-framework-hunit-prof
libghc-test-framework-th-doc libghc-test-framework-th-prof libghc-vector-doc
libghc-vector-prof libghc-wl-pprint-text-doc libghc-wl-pprint-text-prof
libghc-xml-doc libghc-xml-prof gmp-doc libgmp10-doc libmpfr-dev ncurses-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk llvm-11-doc m4-doc
apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev llvm-11-dev binfmt-support libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cdbs dctrl-tools
debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz file
gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libbrotli1 libbsd-dev libbsd0 libcurl3-gnutls
libdebhelper-perl libedit2 libelf1 libffi-dev libffi8
libfile-stripnondeterminism-perl libghc-ansi-terminal-dev
libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev
libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev
libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev
libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev
libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev
libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-regex-base-dev
libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev
libghc-temporary-dev libghc-test-framework-dev
libghc-test-framework-hunit-dev libghc-test-framework-th-dev
libghc-vector-dev libghc-wl-pprint-text-dev libghc-xml-dev libgmp-dev
libgmpxx4ldbl libicu67 libllvm11 libmagic-mgc libmagic1 libmd-dev libmd0
libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpfm4
libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libxml2 libz3-4 llvm-11 llvm-11-linker-tools
llvm-11-runtime m4 man-db po-debconf sbuild-build-depends-phybin-dummy
sensible-utils
0 upgraded, 96 newly installed, 0 to remove and 22 not upgraded.
Need to get 181 MB of archives.
After this operation, 1418 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZKDRd2/apt_archive ./ sbuild-build-depends-phybin-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libllvm11 armhf 1:11.1.0-4+rpi1 [15.6 MB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf llvm-11-runtime armhf 1:11.1.0-4+rpi1 [187 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf llvm-11-linker-tools armhf 1:11.1.0-4+rpi1 [939 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libpfm4 armhf 4.11.1+git32-gd0b85fb-1 [43.2 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf llvm-11 armhf 1:11.1.0-4+rpi1 [6981 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libgmpxx4ldbl armhf 2:6.2.1+dfsg-2 [337 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libgmp-dev armhf 2:6.2.1+dfsg-2 [583 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libffi-dev armhf 3.4.2-2 [61.4 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmd-dev armhf 1.0.3-3 [45.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libbsd-dev armhf 0.11.3-1 [227 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf ghc armhf 8.8.4-2+rpi2 [119 MB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf cdbs all 0.4.163 [82.6 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf dh-buildinfo all 0.11+nmu2 [18.4 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf html-xml-utils armhf 7.7-1.1 [204 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf haskell-devscripts-minimal all 0.16.1 [40.7 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf hscolour armhf 1.24.4-3+b3 [346 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf haskell-devscripts all 0.16.1 [17.2 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libghc-colour-dev armhf 2.3.5-2+b2 [227 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libghc-ansi-terminal-dev armhf 0.10.3-1+b2 [168 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libghc-ansi-wl-pprint-dev armhf 0.6.9-2+b2 [78.9 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libghc-hashable-dev armhf 1.3.0.0-2+b2 [111 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libghc-async-dev armhf 2.2.2-2+b2 [76.9 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libghc-base-compat-dev armhf 0.11.1-1+b2 [85.2 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libghc-call-stack-dev armhf 0.2.0-1+b2 [24.4 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libghc-dlist-dev armhf 0.8.0.8-1+b2 [50.6 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libghc-exceptions-dev armhf 0.10.4-1+b2 [138 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libghc-extensible-exceptions-dev armhf 0.1.1.4-11+b2 [11.3 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libghc-fgl-dev armhf 5.7.0.3-1+b1 [472 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libghc-polyparse-dev armhf 1.13-1+b2 [428 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libghc-random-dev armhf 1.1-12+b2 [167 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libghc-temporary-dev armhf 1.3-2+b2 [29.1 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libghc-wl-pprint-text-dev armhf 1.2.0.1-1+b2 [103 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libghc-graphviz-dev armhf 2999.20.0.4-1+b3 [4058 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libghc-hierarchical-clustering-dev armhf 0.4.7-1+b2 [93.9 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libghc-hostname-dev armhf 1.0-15+b2 [12.5 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libghc-hunit-dev armhf 1.6.0.0-3+b2 [117 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libghc-regex-base-dev armhf 0.94.0.0-1+b2 [115 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libghc-regex-posix-dev armhf 0.96.0.0-1+b2 [172 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libghc-language-haskell-extract-dev armhf 0.2.4-10+b3 [19.6 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libghc-old-locale-dev armhf 1.0.0.7-9+b2 [40.3 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libghc-prettyclass-dev armhf 1.0.0.0-9+b2 [54.0 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libghc-primitive-dev armhf 0.7.0.1-1+b2 [379 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libghc-split-dev armhf 0.2.3.4-1+b2 [55.9 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libghc-src-exts-dev armhf 1.23.1-2+b1 [2398 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libghc-xml-dev armhf 1.3.14-10+b2 [265 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libghc-test-framework-dev armhf 0.8.2.0-4+b2 [212 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libghc-test-framework-hunit-dev armhf 0.3.0.2-7+b2 [25.3 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libghc-test-framework-th-dev armhf 0.2.4-12+b3 [27.2 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libghc-vector-dev armhf 0.12.1.2-2+b1 [1798 kB]
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Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libz3-4:armhf (4.8.12-1) ...
Setting up libgmpxx4ldbl:armhf (2:6.2.1+dfsg-2) ...
Setting up libpfm4:armhf (4.11.1+git32-gd0b85fb-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libffi8:armhf (3.4.2-2) ...
Setting up libmd0:armhf (1.0.3-3) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmd-dev:armhf (1.0.3-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up cdbs (0.4.163) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libbsd-dev:armhf (0.11.3-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up libncurses-dev:armhf (6.2+20201114-4) ...
Setting up gettext (0.21-4) ...
Setting up hscolour (1.24.4-3+b3) ...
Setting up libgmp-dev:armhf (2:6.2.1+dfsg-2) ...
Setting up libtool (2.4.6-15) ...
Setting up libedit2:armhf (3.1-20210910-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
Setting up libffi-dev:armhf (3.4.2-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libllvm11:armhf (1:11.1.0-4+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up llvm-11-linker-tools (1:11.1.0-4+rpi1) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libncurses5-dev:armhf (6.2+20201114-4) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up llvm-11-runtime (1:11.1.0-4+rpi1) ...
Setting up html-xml-utils (7.7-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up llvm-11 (1:11.1.0-4+rpi1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up ghc (8.8.4-2+rpi2) ...
update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode
update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode
Setting up libghc-prettyclass-dev (1.0.0.0-9+b2) ...
Setting up libghc-src-exts-dev (1.23.1-2+b1) ...
Setting up libghc-random-dev (1.1-12+b2) ...
Setting up libghc-colour-dev (2.3.5-2+b2) ...
Setting up debhelper (13.5.2) ...
Setting up libghc-split-dev (0.2.3.4-1+b2) ...
Setting up libghc-base-compat-dev (0.11.1-1+b2) ...
Setting up libghc-polyparse-dev (1.13-1+b2) ...
Setting up libghc-old-locale-dev (1.0.0.7-9+b2) ...
Setting up libghc-fgl-dev (5.7.0.3-1+b1) ...
Setting up dh-buildinfo (0.11+nmu2) ...
Setting up libghc-regex-base-dev (0.94.0.0-1+b2) ...
Setting up libghc-dlist-dev (0.8.0.8-1+b2) ...
Setting up libghc-extensible-exceptions-dev (0.1.1.4-11+b2) ...
Setting up haskell-devscripts-minimal (0.16.1) ...
Setting up libghc-hashable-dev (1.3.0.0-2+b2) ...
Setting up libghc-ansi-terminal-dev (0.10.3-1+b2) ...
Setting up libghc-call-stack-dev (0.2.0-1+b2) ...
Setting up libghc-xml-dev (1.3.14-10+b2) ...
Setting up libghc-primitive-dev (0.7.0.1-1+b2) ...
Setting up libghc-exceptions-dev (0.10.4-1+b2) ...
Setting up libghc-wl-pprint-text-dev (1.2.0.1-1+b2) ...
Setting up libghc-hierarchical-clustering-dev (0.4.7-1+b2) ...
Setting up libghc-hostname-dev (1.0-15+b2) ...
Setting up libghc-regex-posix-dev (0.96.0.0-1+b2) ...
Setting up haskell-devscripts (0.16.1) ...
Setting up libghc-language-haskell-extract-dev (0.2.4-10+b3) ...
Setting up libghc-temporary-dev (1.3-2+b2) ...
Setting up libghc-ansi-wl-pprint-dev (0.6.9-2+b2) ...
Setting up libghc-async-dev (2.2.2-2+b2) ...
Setting up libghc-hunit-dev (1.6.0.0-3+b2) ...
Setting up libghc-vector-dev (0.12.1.2-2+b1) ...
Setting up libghc-test-framework-dev (0.8.2.0-4+b2) ...
Setting up libghc-graphviz-dev (2999.20.0.4-1+b3) ...
Setting up libghc-test-framework-th-dev (0.2.4-12+b3) ...
Setting up libghc-test-framework-hunit-dev (0.3.0.2-7+b2) ...
Setting up sbuild-build-depends-phybin-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 cdbs_0.4.163 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-buildinfo_0.11+nmu2 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 ghc_8.8.4-2+rpi2 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 haskell-devscripts_0.16.1 haskell-devscripts-minimal_0.16.1 hostname_3.23 hscolour_1.24.4-3+b3 html-xml-utils_7.7-1.1 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbsd-dev_0.11.3-1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libedit2_3.1-20210910-1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi-dev_3.4.2-2 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libghc-ansi-terminal-dev_0.10.3-1+b2 libghc-ansi-wl-pprint-dev_0.6.9-2+b2 libghc-async-dev_2.2.2-2+b2 libghc-base-compat-dev_0.11.1-1+b2 libghc-call-stack-dev_0.2.0-1+b2 libghc-colour-dev_2.3.5-2+b2 libghc-dlist-dev_0.8.0.8-1+b2 libghc-exceptions-dev_0.10.4-1+b2 libghc-extensible-exceptions-dev_0.1.1.4-11+b2 libghc-fgl-dev_5.7.0.3-1+b1 libghc-graphviz-dev_2999.20.0.4-1+b3 libghc-hashable-dev_1.3.0.0-2+b2 libghc-hierarchical-clustering-dev_0.4.7-1+b2 libghc-hostname-dev_1.0-15+b2 libghc-hunit-dev_1.6.0.0-3+b2 libghc-language-haskell-extract-dev_0.2.4-10+b3 libghc-old-locale-dev_1.0.0.7-9+b2 libghc-polyparse-dev_1.13-1+b2 libghc-prettyclass-dev_1.0.0.0-9+b2 libghc-primitive-dev_0.7.0.1-1+b2 libghc-random-dev_1.1-12+b2 libghc-regex-base-dev_0.94.0.0-1+b2 libghc-regex-posix-dev_0.96.0.0-1+b2 libghc-split-dev_0.2.3.4-1+b2 libghc-src-exts-dev_1.23.1-2+b1 libghc-temporary-dev_1.3-2+b2 libghc-test-framework-dev_0.8.2.0-4+b2 libghc-test-framework-hunit-dev_0.3.0.2-7+b2 libghc-test-framework-th-dev_0.2.4-12+b3 libghc-vector-dev_0.12.1.2-2+b1 libghc-wl-pprint-text-dev_1.2.0.1-1+b2 libghc-xml-dev_1.3.14-10+b2 libgmp-dev_2:6.2.1+dfsg-2 libgmp10_2:6.2.1+dfsg-2 libgmpxx4ldbl_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 libllvm11_1:11.1.0-4+rpi1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd-dev_1.0.3-3 libmd0_1.0.3-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpfm4_4.11.1+git32-gd0b85fb-1 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libz3-4_4.8.12-1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 llvm-11_1:11.1.0-4+rpi1 llvm-11-linker-tools_1:11.1.0-4+rpi1 llvm-11-runtime_1:11.1.0-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-phybin-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.UbKoh8_L/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 25 14:34:39 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./phybin_0.3-5.dsc
dpkg-source: info: extracting phybin in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking phybin_0.3.orig.tar.gz
dpkg-source: info: unpacking phybin_0.3-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying unconstraint-text-dependency.patch
dpkg-source: info: applying unsafeIOToST.patch
dpkg-source: info: applying ghc-8.6.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3-5+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-1c0edd26-cd1e-4bc0-bba2-2e6c14409f4f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package phybin
dpkg-buildpackage: info: source version 0.3-5+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
test -x debian/rules
dh_clean
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
clean_recipe
Running rm -rf dist dist-ghc dist-ghcjs dist-hugs debian/hlibrary.setup Setup.hi Setup.ho Setup.o .\*config\*
Running rm -f configure-ghc-stamp configure-ghcjs-stamp build-ghc-stamp build-ghcjs-stamp build-hugs-stamp build-haddock-stamp
Running rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs
Running rm -f debian/extra-depends-ghc debian/extra-depends-ghcjs
Running rm -f debian/hlibrary.Makefile
Running rm -rf debian/dh_haskell_shlibdeps
Running rm -rf debian/tmp-db
debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85
CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
make_setup_recipe
Running ghc --make Setup.hs -o debian/hlibrary.setup
[1 of 1] Compiling Main ( Setup.hs, Setup.o )
Setup.hs:5:39: warning: [-Wtabs]
Tab character found here, and in two further locations.
Please use spaces instead.
|
5 | import Distribution.PackageDescription
| ^^
Setup.hs:7:1: warning: [-Wdeprecations]
Module `System.Cmd' is deprecated: Use "System.Process" instead
|
7 | import System.Cmd(system)
| ^^^^^^^^^^^^^^^^^^^^^^^^^
Linking debian/hlibrary.setup ...
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
configure_recipe
Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl\,-z\,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests
Running Setup.hs ...
Using Parsec parser
Configuring phybin-0.3...
Flags chosen: bitvec=False, hashrf=True, sequential=False
Warning: 'ghc-options: -rtsopts' has no effect for libraries. It should only
be used for executables.
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.13.0.0
Dependency bytestring -any: using bytestring-0.10.10.1
Dependency containers -any: using containers-0.6.2.1
Dependency directory -any: using directory-1.3.6.0
Dependency fgl -any: using fgl-5.7.0.3
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.4
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.9.0
Dependency split >=0.2: using split-0.2.3.4
Dependency text -any: using text-1.2.4.0
Dependency time -any: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.1.2
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.13.0.0
Dependency bytestring -any: using bytestring-0.10.10.1
Dependency containers -any: using containers-0.6.2.1
Dependency directory -any: using directory-1.3.6.0
Dependency fgl -any: using fgl-5.7.0.3
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.4
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency phybin -any: using phybin-0.3
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.9.0
Dependency split >=0.2: using split-0.2.3.4
Dependency text -any: using text-1.2.4.0
Dependency time -any: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.1.2
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.13.0.0
Dependency bytestring -any: using bytestring-0.10.10.1
Dependency containers -any: using containers-0.6.2.1
Dependency directory -any: using directory-1.3.6.0
Dependency fgl -any: using fgl-5.7.0.3
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.4
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7
Dependency parsec >=3.1.0: using parsec-3.1.14.0
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.9.0
Dependency split >=0.2: using split-0.2.3.4
Dependency test-framework -any: using test-framework-0.8.2.0
Dependency test-framework-hunit -any: using test-framework-hunit-0.3.0.2
Dependency test-framework-th -any: using test-framework-th-0.2.4
Dependency text -any: using text-1.2.4.0
Dependency time -any: using time-1.9.3
Dependency vector >=0.10: using vector-0.12.1.2
Source component graph:
component test:test-phybin
component lib
component exe:phybin dependency lib
Configured component graph:
component phybin-0.3-97u1cIDtKE8CTWY5wJXt7q-test-phybin
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1
include test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW
include test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
component phybin-0.3-2uzR2gthP2d9ltb0isJso8
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
component phybin-0.3-KA1FdWOXkm05lvy1RI546Y-phybin
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include phybin-0.3-2uzR2gthP2d9ltb0isJso8
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
Linked component graph:
unit phybin-0.3-97u1cIDtKE8CTWY5wJXt7q-test-phybin
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1
include test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW
include test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
unit phybin-0.3-2uzR2gthP2d9ltb0isJso8
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
Bio.Phylogeny.PhyBin=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-2uzR2gthP2d9ltb0isJso8:Bio.Phylogeny.PhyBin.Visualize
unit phybin-0.3-KA1FdWOXkm05lvy1RI546Y-phybin
include HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
include async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
include base-4.13.0.0
include bytestring-0.10.10.1
include containers-0.6.2.1
include directory-1.3.6.0
include fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
include filepath-1.4.2.1
include graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
include hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
include parsec-3.1.14.0
include phybin-0.3-2uzR2gthP2d9ltb0isJso8
include prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
include process-1.6.9.0
include split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
include text-1.2.4.0
include time-1.9.3
include vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
Ready component graph:
definite phybin-0.3-97u1cIDtKE8CTWY5wJXt7q-test-phybin
depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
depends base-4.13.0.0
depends bytestring-0.10.10.1
depends containers-0.6.2.1
depends directory-1.3.6.0
depends fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
depends filepath-1.4.2.1
depends graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
depends parsec-3.1.14.0
depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
depends process-1.6.9.0
depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
depends test-framework-0.8.2.0-Dd6vJPiuPD56XEdCHK8PK1
depends test-framework-hunit-0.3.0.2-6UtlEpeASinKBbxqiH9gcW
depends test-framework-th-0.2.4-K8hSHv8E3Dg7FH1wPRYYQ2
depends text-1.2.4.0
depends time-1.9.3
depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
definite phybin-0.3-2uzR2gthP2d9ltb0isJso8
depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
depends base-4.13.0.0
depends bytestring-0.10.10.1
depends containers-0.6.2.1
depends directory-1.3.6.0
depends fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
depends filepath-1.4.2.1
depends graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
depends parsec-3.1.14.0
depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
depends process-1.6.9.0
depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
depends text-1.2.4.0
depends time-1.9.3
depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
definite phybin-0.3-KA1FdWOXkm05lvy1RI546Y-phybin
depends HUnit-1.6.0.0-Jclpnuqehp8GGyrAnfCVLK
depends async-2.2.2-1jIe70QEPH1GVJJWPbuUZ4
depends base-4.13.0.0
depends bytestring-0.10.10.1
depends containers-0.6.2.1
depends directory-1.3.6.0
depends fgl-5.7.0.3-3IKTVczrMnI6G4jP2JH0Vf
depends filepath-1.4.2.1
depends graphviz-2999.20.0.4-GEErVMayg0aCPFMfinBT2z
depends hierarchical-clustering-0.4.7-Cygyc1OFL9mHkRf0Kma1fK
depends parsec-3.1.14.0
depends phybin-0.3-2uzR2gthP2d9ltb0isJso8
depends prettyclass-1.0.0.0-EFSqHBFTulj7zz3ZXEFZ96
depends process-1.6.9.0
depends split-0.2.3.4-KyPtAwfJzED2zEIheQpqQL
depends text-1.2.4.0
depends time-1.9.3
depends vector-0.12.1.2-C2W44iPdAFeHo4yLU081Gd
Using Cabal-3.0.1.0 compiled by ghc-8.8
Using compiler: ghc-8.8.4
Using install prefix: /usr
Executables installed in: /usr/bin
Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.8.4/phybin-0.3-2uzR2gthP2d9ltb0isJso8
Dynamic Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.8.4
Private executables installed in: /usr/lib/arm-linux-ghc-8.8.4/phybin-0.3
Data files installed in: /usr/share/phybin
Documentation installed in: /usr/share/doc/arm-linux-ghc-8.8.4/phybin-0.3
Configuration files installed in: /usr/etc
No alex found
Using ar found on system at: /usr/bin/arm-linux-gnueabihf-ar
No c2hs found
No cpphs found
No doctest found
Using gcc version 10 found on system at: /usr/bin/arm-linux-gnueabihf-gcc
Using ghc version 8.8.4 found on system at: /usr/bin/ghc
Using ghc-pkg version 8.8.4 found on system at: /usr/bin/ghc-pkg
No ghcjs found
No ghcjs-pkg found
No greencard found
Using haddock version 2.23.0 found on system at: /usr/bin/haddock
No happy found
Using haskell-suite found on system at: haskell-suite-dummy-location
Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location
No hmake found
Using hpc version 0.67 found on system at: /usr/bin/hpc
Using hsc2hs version 0.68.7 found on system at: /usr/bin/hsc2hs
Using hscolour version 1.24 found on system at: /usr/bin/HsColour
No jhc found
Using ld found on system at: /usr/bin/arm-linux-gnueabihf-ld.gold
No pkg-config found
Using runghc version 8.8.4 found on system at: /usr/bin/runghc
Using strip version 2.37 found on system at: /usr/bin/strip
Using tar found on system at: /bin/tar
No uhc found
touch configure-ghc-stamp
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
build_recipe
Running debian/hlibrary.setup build --builddir=dist-ghc
Running Setup.hs ...
Preprocessing test suite 'test-phybin' for phybin-0.3..
Building test suite 'test-phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
[1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of `Data.Foldable' is redundant
except perhaps to import instances from `Data.Foldable'
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of `Data.Monoid' is redundant
except perhaps to import instances from `Data.Monoid'
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o )
[4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o )
[5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o )
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Linking dist-ghc/build/test-phybin/test-phybin ...
Preprocessing library for phybin-0.3..
Building library for phybin-0.3..
[1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of `Data.Foldable' is redundant
except perhaps to import instances from `Data.Foldable'
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of `Data.Monoid' is redundant
except perhaps to import instances from `Data.Monoid'
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o )
[4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o )
[5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
Preprocessing executable 'phybin' for phybin-0.3..
Building executable 'phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
[ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports]
The import of `Data.Foldable' is redundant
except perhaps to import instances from `Data.Foldable'
To import instances alone, use: import Data.Foldable()
|
38 | import Data.Foldable (Foldable(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports]
The import of `Data.Monoid' is redundant
except perhaps to import instances from `Data.Monoid'
To import instances alone, use: import Data.Monoid()
|
40 | import Data.Monoid (mappend, mconcat)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o )
[ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o )
[ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
22 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o )
[10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o )
Main.hs:151:1: warning: [-Wtabs]
Tab character found here, and in 66 further locations.
Please use spaces instead.
|
151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++
| ^^^^^^^^
Main.hs:263:14: warning:
accepting non-standard pattern guards (use PatternGuards to suppress this message)
Expected _ <- num_taxa cfg
|
263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant"
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
Linking dist-ghc/build/phybin/phybin ...
touch build-ghc-stamp
Adding cdbs dependencies to debian/phybin.substvars
dh_installdirs -pphybin \
dh_haskell_blurbs "ghc" -pphybin
debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc
Running Setup.hs ...
Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.8.4/phybin-0.3-2uzR2gthP2d9ltb0isJso8
Installing executable phybin in debian/tmp-inst-ghc/usr/bin
Warning: The directory debian/tmp-inst-ghc/usr/bin is not in the system search
path.
dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin
dh_installdocs -pphybin
dh_installexamples -pphybin
dh_installman -pphybin
dh_installinfo -pphybin
dh_installmenu -pphybin
dh_installcron -pphybin
dh_systemd_enable -pphybin
dh_installinit -pphybin
dh_installdebconf -pphybin
dh_installemacsen -pphybin
dh_installcatalogs -pphybin
dh_installpam -pphybin
dh_installlogrotate -pphybin
dh_installlogcheck -pphybin
dh_installchangelogs -pphybin
dh_installudev -pphybin
dh_lintian -pphybin
dh_bugfiles -pphybin
dh_install -pphybin
dh_systemd_start -pphybin
dh_link -pphybin
dh_buildinfo -pphybin
dh_installmime -pphybin
dh_installgsettings -pphybin
dh_strip -pphybin --no-automatic-dbgsym
dh_strip_nondeterminism -pphybin
dh_compress -pphybin -X .haddock -X .hs -X .txt
dh_fixperms -pphybin
dh_makeshlibs -pphybin -XlibHS
dh_installdeb -pphybin
dh_perl -pphybin
dh_shlibdeps -pphybin -- --ignore-missing-info
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against librt.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against libutil.so.1 (it uses none of the library's symbols)
dh_gencontrol -pphybin
dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined
dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined
dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined
dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined
dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined
dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined
dh_md5sums -pphybin
dh_builddeb -pphybin
dpkg-deb: building package 'phybin' in '../phybin_0.3-5+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../phybin_0.3-5+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-03T08:39:27Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
phybin_0.3-5+b1_armhf.changes:
------------------------------
Format: 1.8
Date: Mon, 25 Jan 2021 20:00:10 +0530
Source: phybin (0.3-5)
Binary: phybin
Binary-Only: yes
Architecture: armhf
Version: 0.3-5+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
phybin - binning/clustering newick trees by topology
Changes:
phybin (0.3-5+b1) bookworm-staging; urgency=low, binary-only=yes
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* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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7714478e9742a87031229d9d09d2f65b840ceeff 1847032 phybin_0.3-5+b1_armhf.deb
Checksums-Sha256:
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Files:
caff1c44612a243ee78050b450883192 7449 science optional phybin_0.3-5+b1_armhf.buildinfo
7caeb92aeaff7c88a92838144d1e21fa 1847032 science optional phybin_0.3-5+b1_armhf.deb
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| Package contents |
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phybin_0.3-5+b1_armhf.deb
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new Debian package, version 2.0.
size 1847032 bytes: control archive=1072 bytes.
936 bytes, 21 lines control
478 bytes, 7 lines md5sums
Package: phybin
Source: phybin (0.3-5)
Version: 0.3-5+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 12159
Depends: libc6 (>= 2.29), libffi8 (>= 3.4), libgmp10 (>= 2:6.2.1+dfsg)
Section: science
Priority: optional
Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/
Description: binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
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It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
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phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).
drwxr-xr-x root/root 0 2021-01-25 14:30 ./
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/bin/
-rwxr-xr-x root/root 12426004 2021-01-25 14:30 ./usr/bin/phybin
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/doc/phybin/
-rw-r--r-- root/root 4056 2021-01-25 14:30 ./usr/share/doc/phybin/buildinfo_armhf.gz
-rw-r--r-- root/root 219 2021-01-25 14:30 ./usr/share/doc/phybin/changelog.Debian.armhf.gz
-rw-r--r-- root/root 659 2021-01-25 14:30 ./usr/share/doc/phybin/changelog.Debian.gz
-rw-r--r-- root/root 2692 2021-01-25 14:07 ./usr/share/doc/phybin/copyright
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 27 2021-01-25 14:07 ./usr/share/lintian/overrides/phybin
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/man/
drwxr-xr-x root/root 0 2021-01-25 14:30 ./usr/share/man/man1/
-rw-r--r-- root/root 2293 2021-01-25 14:30 ./usr/share/man/man1/phybin.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 112072
Build-Time: 1952
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 686
Job: phybin_0.3-5
Machine Architecture: armhf
Package: phybin
Package-Time: 2687
Source-Version: 0.3-5
Space: 112072
Status: successful
Version: 0.3-5+b1
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Finished at 2021-10-03T08:39:27Z
Build needed 00:44:47, 112072k disc space