phybin →
0.3-3+b1 →
armhf → 2020-02-04 05:18:40
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| phybin 0.3-3+b1 (armhf) Tue, 04 Feb 2020 04:55:04 +0000 |
+==============================================================================+
Package: phybin
Version: 0.3-3+b1
Source Version: 0.3-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-ac5765e7-566b-44d2-8c90-0ed316076900' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.2 MB in 10s (2522 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'phybin' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/phybin.git
Please use:
git clone https://salsa.debian.org/med-team/phybin.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 120 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main phybin 0.3-3 (dsc) [2259 B]
Get:2 http://172.17.0.1/private bullseye-staging/main phybin 0.3-3 (tar) [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main phybin 0.3-3 (diff) [6164 B]
Fetched 120 kB in 0s (720 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/phybin-YJTi7y/phybin-0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/phybin-YJTi7y' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4mIrtl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4mIrtl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4mIrtl/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9796 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12214 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev (>= 0.2), libghc-text-dev, libghc-vector-dev (>= 0.10), libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev
Filtered Build-Depends: debhelper (>= 10), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev (>= 0.2), libghc-text-dev, libghc-vector-dev (>= 0.10), libghc-test-framework-dev, libghc-test-framework-hunit-dev, libghc-test-framework-th-dev
dpkg-deb: building package 'sbuild-build-depends-phybin-dummy' in '/<<BUILDDIR>>/resolver-4mIrtl/apt_archive/sbuild-build-depends-phybin-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-phybin-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Sources [620 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ Packages [699 B]
Fetched 2652 B in 0s (12.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install phybin build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binfmt-support bsdmainutils cdbs
dctrl-tools debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz
file gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libbrotli1 libbsd-dev libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libedit2 libelf1 libffi-dev
libfile-stripnondeterminism-perl libghc-ansi-terminal-dev
libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev
libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev
libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev
libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev
libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev
libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-regex-base-dev
libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev
libghc-temporary-dev libghc-test-framework-dev
libghc-test-framework-hunit-dev libghc-test-framework-th-dev
libghc-transformers-compat-dev libghc-vector-dev libghc-wl-pprint-text-dev
libghc-xml-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2
libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libllvm6.0 libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 llvm-6.0
llvm-6.0-runtime m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make gettext-doc libasprintf-dev
libgettextpo-dev ghc-prof ghc-doc haskell-doc groff libghc-ansi-terminal-doc
libghc-ansi-terminal-prof libghc-ansi-wl-pprint-doc
libghc-ansi-wl-pprint-prof libghc-async-doc libghc-async-prof
libghc-base-compat-doc libghc-base-compat-prof libghc-call-stack-doc
libghc-call-stack-prof libghc-colour-doc libghc-colour-prof libghc-dlist-doc
libghc-dlist-prof libghc-exceptions-doc libghc-exceptions-prof
libghc-extensible-exceptions-doc libghc-extensible-exceptions-prof
libghc-fgl-doc libghc-fgl-prof libghc-graphviz-doc libghc-graphviz-prof
libghc-hashable-doc libghc-hashable-prof libghc-hierarchical-clustering-doc
libghc-hierarchical-clustering-prof libghc-hostname-doc libghc-hostname-prof
libghc-hunit-doc libghc-hunit-prof libghc-language-haskell-extract-doc
libghc-language-haskell-extract-prof libghc-old-locale-doc
libghc-old-locale-prof libghc-polyparse-doc libghc-polyparse-prof
libghc-prettyclass-doc libghc-prettyclass-prof libghc-primitive-doc
libghc-primitive-prof libghc-random-doc libghc-random-prof
libghc-regex-base-doc libghc-regex-base-prof libghc-regex-posix-doc
libghc-regex-posix-prof libghc-split-doc libghc-split-prof
libghc-src-exts-doc libghc-src-exts-prof libghc-temporary-doc
libghc-temporary-prof libghc-test-framework-doc libghc-test-framework-prof
libghc-test-framework-hunit-doc libghc-test-framework-hunit-prof
libghc-test-framework-th-doc libghc-test-framework-th-prof
libghc-transformers-compat-doc libghc-transformers-compat-prof
libghc-vector-doc libghc-vector-prof libghc-wl-pprint-text-doc
libghc-wl-pprint-text-prof libghc-xml-doc libghc-xml-prof gmp-doc
libgmp10-doc libmpfr-dev krb5-doc krb5-user ncurses-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk llvm-6.0-doc m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
llvm-6.0-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binfmt-support bsdmainutils cdbs
dctrl-tools debhelper dh-autoreconf dh-buildinfo dh-strip-nondeterminism dwz
file gettext gettext-base ghc groff-base haskell-devscripts
haskell-devscripts-minimal hscolour html-xml-utils intltool-debian
libarchive-zip-perl libbrotli1 libbsd-dev libbsd0 libcroco3 libcurl3-gnutls
libdebhelper-perl libedit2 libelf1 libffi-dev
libfile-stripnondeterminism-perl libghc-ansi-terminal-dev
libghc-ansi-wl-pprint-dev libghc-async-dev libghc-base-compat-dev
libghc-call-stack-dev libghc-colour-dev libghc-dlist-dev
libghc-exceptions-dev libghc-extensible-exceptions-dev libghc-fgl-dev
libghc-graphviz-dev libghc-hashable-dev libghc-hierarchical-clustering-dev
libghc-hostname-dev libghc-hunit-dev libghc-language-haskell-extract-dev
libghc-old-locale-dev libghc-polyparse-dev libghc-prettyclass-dev
libghc-primitive-dev libghc-random-dev libghc-regex-base-dev
libghc-regex-posix-dev libghc-split-dev libghc-src-exts-dev
libghc-temporary-dev libghc-test-framework-dev
libghc-test-framework-hunit-dev libghc-test-framework-th-dev
libghc-transformers-compat-dev libghc-vector-dev libghc-wl-pprint-text-dev
libghc-xml-dev libglib2.0-0 libgmp-dev libgmpxx4ldbl libgssapi-krb5-2
libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libllvm6.0 libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 llvm-6.0
llvm-6.0-runtime m4 man-db po-debconf sbuild-build-depends-phybin-dummy
sensible-utils
0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded.
Need to get 158 MB of archives.
After this operation, 1313 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4mIrtl/apt_archive ./ sbuild-build-depends-phybin-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf binfmt-support armhf 2.2.0-2 [56.7 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libllvm6.0 armhf 1:6.0.1-12+rpi1 [13.1 MB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf llvm-6.0-runtime armhf 1:6.0.1-12+rpi1 [190 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf llvm-6.0 armhf 1:6.0.1-12+rpi1 [4098 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-4 [21.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libgmp-dev armhf 2:6.1.2+dfsg-4 [570 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.3-3 [57.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libbsd-dev armhf 0.10.0-1 [231 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20191019-1 [284 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20191019-1 [940 B]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf ghc armhf 8.8.1+dfsg1+is+8.6.5+dfsg1-2+rpi1+b1 [103 MB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf cdbs all 0.4.159 [83.7 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1+rpi1 [1137 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dh-buildinfo all 0.11+nmu2 [18.4 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf html-xml-utils armhf 7.7-1 [201 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf haskell-devscripts-minimal all 0.15.1 [39.8 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf hscolour armhf 1.24.4-2+b4 [337 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf haskell-devscripts all 0.15.1 [16.8 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libghc-colour-dev armhf 2.3.5-1+b1 [227 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libghc-ansi-terminal-dev armhf 0.8.2-1+b2 [158 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libghc-ansi-wl-pprint-dev armhf 0.6.8.2-2+b4 [79.2 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libghc-hashable-dev armhf 1.2.7.0-6+b1 [110 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libghc-async-dev armhf 2.2.2-1+b1 [77.6 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libghc-base-compat-dev armhf 0.10.5-1+b1 [81.4 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libghc-call-stack-dev armhf 0.1.0-5+b3 [22.7 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libghc-dlist-dev armhf 0.8.0.6-2+b1 [50.3 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libghc-transformers-compat-dev armhf 0.6.5-1+b1 [91.6 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libghc-exceptions-dev armhf 0.10.2-1+b1 [138 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libghc-extensible-exceptions-dev armhf 0.1.1.4-10+b3 [11.3 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libghc-fgl-dev armhf 5.7.0.1-1+b1 [468 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libghc-polyparse-dev armhf 1.12.1-1+b1 [426 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libghc-random-dev armhf 1.1-11+b1 [163 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libghc-temporary-dev armhf 1.3-1+b2 [29.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libghc-wl-pprint-text-dev armhf 1.2.0.0-3+b3 [103 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libghc-graphviz-dev armhf 2999.20.0.3-1+b1 [4050 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libghc-hierarchical-clustering-dev armhf 0.4.6-6+b1 [93.6 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libghc-hostname-dev armhf 1.0-14+b3 [12.6 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libghc-hunit-dev armhf 1.6.0.0-2+b3 [116 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libghc-regex-base-dev armhf 0.93.2-13+b2 [87.5 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libghc-regex-posix-dev armhf 0.95.2-11+b3 [159 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libghc-language-haskell-extract-dev armhf 0.2.4-9+b3 [19.8 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libghc-old-locale-dev armhf 1.0.0.7-8+b3 [40.4 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libghc-prettyclass-dev armhf 1.0.0.0-8+b3 [53.4 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libghc-primitive-dev armhf 0.6.4.0-3+b1 [410 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libghc-split-dev armhf 0.2.3.3-3+b1 [55.5 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libghc-src-exts-dev armhf 1.20.3-1+b1 [4163 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libghc-xml-dev armhf 1.3.14-9+b2 [258 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libghc-test-framework-dev armhf 0.8.2.0-3+b1 [211 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libghc-test-framework-hunit-dev armhf 0.3.0.2-6+b2 [25.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libghc-test-framework-th-dev armhf 0.2.4-11+b2 [27.2 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libghc-vector-dev armhf 0.12.0.3-2 [1652 kB]
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Unpacking libghc-regex-posix-dev (0.95.2-11+b3) ...
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Unpacking libghc-language-haskell-extract-dev (0.2.4-9+b3) ...
Selecting previously unselected package libghc-old-locale-dev.
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Unpacking libghc-old-locale-dev (1.0.0.7-8+b3) ...
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Unpacking libghc-prettyclass-dev (1.0.0.0-8+b3) ...
Selecting previously unselected package libghc-primitive-dev.
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Unpacking libghc-primitive-dev (0.6.4.0-3+b1) ...
Selecting previously unselected package libghc-split-dev.
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Unpacking libghc-split-dev (0.2.3.3-3+b1) ...
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Unpacking libghc-src-exts-dev (1.20.3-1+b1) ...
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Unpacking libghc-xml-dev (1.3.14-9+b2) ...
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Unpacking libghc-test-framework-dev (0.8.2.0-3+b1) ...
Selecting previously unselected package libghc-test-framework-hunit-dev.
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Unpacking libghc-test-framework-hunit-dev (0.3.0.2-6+b2) ...
Selecting previously unselected package libghc-test-framework-th-dev.
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Unpacking libghc-test-framework-th-dev (0.2.4-11+b2) ...
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Selecting previously unselected package sbuild-build-depends-phybin-dummy.
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Unpacking sbuild-build-depends-phybin-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6-6) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up hscolour (1.24.4-2+b4) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-1+rpi1) ...
No schema files found: doing nothing.
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libdebhelper-perl (12.9) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libffi-dev:armhf (3.3-3) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libkrb5support0:armhf (1.17-6+b1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libgmpxx4ldbl:armhf (2:6.1.2+dfsg-4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libncurses6:armhf (6.1+20191019-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up binfmt-support (2.2.0-2) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libk5crypto3:armhf (1.17-6+b1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up cdbs (0.4.159) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libbsd-dev:armhf (0.10.0-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libncurses-dev:armhf (6.1+20191019-1) ...
Setting up libgmp-dev:armhf (2:6.1.2+dfsg-4) ...
Setting up libtool (2.4.6-11) ...
Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up m4 (1.4.18-4) ...
Setting up libllvm6.0:armhf (1:6.0.1-12+rpi1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up llvm-6.0-runtime (1:6.0.1-12+rpi1) ...
Setting up groff-base (1.22.4-4) ...
Setting up libncurses5-dev:armhf (6.1+20191019-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up llvm-6.0 (1:6.0.1-12+rpi1) ...
Setting up libcurl3-gnutls:armhf (7.67.0-2) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up html-xml-utils (7.7-1) ...
Setting up ghc (8.8.1+dfsg1+is+8.6.5+dfsg1-2+rpi1+b1) ...
update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode
update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode
Setting up libghc-prettyclass-dev (1.0.0.0-8+b3) ...
Setting up libghc-src-exts-dev (1.20.3-1+b1) ...
Setting up libghc-random-dev (1.1-11+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up libghc-colour-dev (2.3.5-1+b1) ...
Setting up libghc-split-dev (0.2.3.3-3+b1) ...
Setting up libghc-base-compat-dev (0.10.5-1+b1) ...
Setting up libghc-polyparse-dev (1.12.1-1+b1) ...
Setting up libghc-old-locale-dev (1.0.0.7-8+b3) ...
Setting up libghc-fgl-dev (5.7.0.1-1+b1) ...
Setting up libghc-transformers-compat-dev (0.6.5-1+b1) ...
Setting up libghc-regex-base-dev (0.93.2-13+b2) ...
Setting up libghc-dlist-dev (0.8.0.6-2+b1) ...
Setting up libghc-extensible-exceptions-dev (0.1.1.4-10+b3) ...
Setting up libghc-hashable-dev (1.2.7.0-6+b1) ...
Setting up libghc-ansi-terminal-dev (0.8.2-1+b2) ...
Setting up libghc-call-stack-dev (0.1.0-5+b3) ...
Setting up libghc-xml-dev (1.3.14-9+b2) ...
Setting up libghc-primitive-dev (0.6.4.0-3+b1) ...
Setting up libghc-exceptions-dev (0.10.2-1+b1) ...
Setting up libghc-wl-pprint-text-dev (1.2.0.0-3+b3) ...
Setting up libghc-hierarchical-clustering-dev (0.4.6-6+b1) ...
Setting up libghc-hostname-dev (1.0-14+b3) ...
Setting up libghc-regex-posix-dev (0.95.2-11+b3) ...
Setting up libghc-language-haskell-extract-dev (0.2.4-9+b3) ...
Setting up libghc-temporary-dev (1.3-1+b2) ...
Setting up libghc-ansi-wl-pprint-dev (0.6.8.2-2+b4) ...
Setting up libghc-async-dev (2.2.2-1+b1) ...
Setting up libghc-hunit-dev (1.6.0.0-2+b3) ...
Setting up libghc-vector-dev (0.12.0.3-2) ...
Setting up libghc-test-framework-dev (0.8.2.0-3+b1) ...
Setting up libghc-graphviz-dev (2999.20.0.3-1+b1) ...
Setting up libghc-test-framework-th-dev (0.2.4-11+b2) ...
Setting up libghc-test-framework-hunit-dev (0.3.0.2-6+b2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up dh-buildinfo (0.11+nmu2) ...
Setting up haskell-devscripts-minimal (0.15.1) ...
Setting up haskell-devscripts (0.15.1) ...
Setting up sbuild-build-depends-phybin-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binfmt-support_2.2.0-2 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cdbs_0.4.159 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-buildinfo_0.11+nmu2 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 ghc_8.8.1+dfsg1+is+8.6.5+dfsg1-2+rpi1+b1 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 haskell-devscripts_0.15.1 haskell-devscripts-minimal_0.15.1 hostname_3.23 hscolour_1.24.4-2+b4 html-xml-utils_7.7-1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd-dev_0.10.0-1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi-dev_3.3-3 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libghc-ansi-terminal-dev_0.8.2-1+b2 libghc-ansi-wl-pprint-dev_0.6.8.2-2+b4 libghc-async-dev_2.2.2-1+b1 libghc-base-compat-dev_0.10.5-1+b1 libghc-call-stack-dev_0.1.0-5+b3 libghc-colour-dev_2.3.5-1+b1 libghc-dlist-dev_0.8.0.6-2+b1 libghc-exceptions-dev_0.10.2-1+b1 libghc-extensible-exceptions-dev_0.1.1.4-10+b3 libghc-fgl-dev_5.7.0.1-1+b1 libghc-graphviz-dev_2999.20.0.3-1+b1 libghc-hashable-dev_1.2.7.0-6+b1 libghc-hierarchical-clustering-dev_0.4.6-6+b1 libghc-hostname-dev_1.0-14+b3 libghc-hunit-dev_1.6.0.0-2+b3 libghc-language-haskell-extract-dev_0.2.4-9+b3 libghc-old-locale-dev_1.0.0.7-8+b3 libghc-polyparse-dev_1.12.1-1+b1 libghc-prettyclass-dev_1.0.0.0-8+b3 libghc-primitive-dev_0.6.4.0-3+b1 libghc-random-dev_1.1-11+b1 libghc-regex-base-dev_0.93.2-13+b2 libghc-regex-posix-dev_0.95.2-11+b3 libghc-split-dev_0.2.3.3-3+b1 libghc-src-exts-dev_1.20.3-1+b1 libghc-temporary-dev_1.3-1+b2 libghc-test-framework-dev_0.8.2.0-3+b1 libghc-test-framework-hunit-dev_0.3.0.2-6+b2 libghc-test-framework-th-dev_0.2.4-11+b2 libghc-transformers-compat-dev_0.6.5-1+b1 libghc-vector-dev_0.12.0.3-2 libghc-wl-pprint-text-dev_1.2.0.0-3+b3 libghc-xml-dev_1.3.14-9+b2 libglib2.0-0_2.62.4-1+rpi1 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 libllvm6.0_1:6.0.1-12+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20191019-1 libncurses5-dev_6.1+20191019-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 llvm-6.0_1:6.0.1-12+rpi1 llvm-6.0-runtime_1:6.0.1-12+rpi1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-phybin-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 19 20:55:43 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./phybin_0.3-3.dsc
dpkg-source: info: extracting phybin in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking phybin_0.3.orig.tar.gz
dpkg-source: info: unpacking phybin_0.3-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying unconstraint-text-dependency.patch
dpkg-source: info: applying unsafeIOToST.patch
dpkg-source: info: applying ghc-8.6.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.3-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ac5765e7-566b-44d2-8c90-0ed316076900
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package phybin
dpkg-buildpackage: info: source version 0.3-3+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
clean_recipe
Running rm -rf dist dist-ghc dist-ghcjs dist-hugs debian/hlibrary.setup Setup.hi Setup.ho Setup.o .\*config\*
Running rm -f configure-ghc-stamp configure-ghcjs-stamp build-ghc-stamp build-ghcjs-stamp build-hugs-stamp build-haddock-stamp
Running rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs
Running rm -f debian/extra-depends-ghc debian/extra-depends-ghcjs
Running rm -f debian/hlibrary.Makefile
Running rm -rf debian/dh_haskell_shlibdeps
Running rm -rf debian/tmp-db
debian/rules build-arch
test -x debian/rules
mkdir -p "."
CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85
CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
make_setup_recipe
Running ghc --make Setup.hs -o debian/hlibrary.setup
[1 of 1] Compiling Main ( Setup.hs, Setup.o )
Setup.hs:5:39: warning: [-Wtabs]
Tab character found here, and in two further locations.
Please use spaces instead.
|
5 | import Distribution.PackageDescription
| ^^
Setup.hs:7:1: warning: [-Wdeprecations]
Module `System.Cmd' is deprecated: Use "System.Process" instead
|
7 | import System.Cmd(system)
| ^^^^^^^^^^^^^^^^^^^^^^^^^
Linking debian/hlibrary.setup ...
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
configure_recipe
Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl\,-z\,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests
Running Setup.hs ...
Using Parsec parser
Configuring phybin-0.3...
Flags chosen: bitvec=False, hashrf=True, sequential=False
Warning: 'ghc-options: -rtsopts' has no effect for libraries. It should only
be used for executables.
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.12.0.0
Dependency bytestring -any: using bytestring-0.10.8.2
Dependency containers -any: using containers-0.6.0.1
Dependency directory -any: using directory-1.3.3.0
Dependency fgl -any: using fgl-5.7.0.1
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.3
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6
Dependency parsec >=3.1.0: using parsec-3.1.13.0
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.5.0
Dependency split >=0.2: using split-0.2.3.3
Dependency text -any: using text-1.2.3.1
Dependency time -any: using time-1.8.0.2
Dependency vector >=0.10: using vector-0.12.0.3
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.12.0.0
Dependency bytestring -any: using bytestring-0.10.8.2
Dependency containers -any: using containers-0.6.0.1
Dependency directory -any: using directory-1.3.3.0
Dependency fgl -any: using fgl-5.7.0.1
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.3
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6
Dependency parsec >=3.1.0: using parsec-3.1.13.0
Dependency phybin -any: using phybin-0.3
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.5.0
Dependency split >=0.2: using split-0.2.3.3
Dependency text -any: using text-1.2.3.1
Dependency time -any: using time-1.8.0.2
Dependency vector >=0.10: using vector-0.12.0.3
Dependency HUnit -any: using HUnit-1.6.0.0
Dependency async -any: using async-2.2.2
Dependency base >=3 && <5: using base-4.12.0.0
Dependency bytestring -any: using bytestring-0.10.8.2
Dependency containers -any: using containers-0.6.0.1
Dependency directory -any: using directory-1.3.3.0
Dependency fgl -any: using fgl-5.7.0.1
Dependency filepath -any: using filepath-1.4.2.1
Dependency graphviz >=2999.16: using graphviz-2999.20.0.3
Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.6
Dependency parsec >=3.1.0: using parsec-3.1.13.0
Dependency prettyclass -any: using prettyclass-1.0.0.0
Dependency process -any: using process-1.6.5.0
Dependency split >=0.2: using split-0.2.3.3
Dependency test-framework -any: using test-framework-0.8.2.0
Dependency test-framework-hunit -any: using test-framework-hunit-0.3.0.2
Dependency test-framework-th -any: using test-framework-th-0.2.4
Dependency text -any: using text-1.2.3.1
Dependency time -any: using time-1.8.0.2
Dependency vector >=0.10: using vector-0.12.0.3
Source component graph:
component test:test-phybin
component lib
component exe:phybin dependency lib
Configured component graph:
component phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5
include test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4
include test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
component phybin-0.3-DNqARF3AU0I462TSoTIPXZ
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
component phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include phybin-0.3-DNqARF3AU0I462TSoTIPXZ
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
Linked component graph:
unit phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5
include test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4
include test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
unit phybin-0.3-DNqARF3AU0I462TSoTIPXZ
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
Bio.Phylogeny.PhyBin=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-DNqARF3AU0I462TSoTIPXZ:Bio.Phylogeny.PhyBin.Visualize
unit phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin
include HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
include async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
include base-4.12.0.0
include bytestring-0.10.8.2
include containers-0.6.0.1
include directory-1.3.3.0
include fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
include filepath-1.4.2.1
include graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
include hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
include parsec-3.1.13.0
include phybin-0.3-DNqARF3AU0I462TSoTIPXZ
include prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
include process-1.6.5.0
include split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
include text-1.2.3.1
include time-1.8.0.2
include vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
Ready component graph:
definite phybin-0.3-LNK3dN3IUOWBiIVTsXDXXX-test-phybin
depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
depends base-4.12.0.0
depends bytestring-0.10.8.2
depends containers-0.6.0.1
depends directory-1.3.3.0
depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
depends filepath-1.4.2.1
depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
depends parsec-3.1.13.0
depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
depends process-1.6.5.0
depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
depends test-framework-0.8.2.0-9rWb9rIZt1V2zpMGrP5Tk5
depends test-framework-hunit-0.3.0.2-FEboM591PcY82mNBbLeEw4
depends test-framework-th-0.2.4-FWIZXDtc00YJq4cKrZpe0P
depends text-1.2.3.1
depends time-1.8.0.2
depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
definite phybin-0.3-DNqARF3AU0I462TSoTIPXZ
depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
depends base-4.12.0.0
depends bytestring-0.10.8.2
depends containers-0.6.0.1
depends directory-1.3.3.0
depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
depends filepath-1.4.2.1
depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
depends parsec-3.1.13.0
depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
depends process-1.6.5.0
depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
depends text-1.2.3.1
depends time-1.8.0.2
depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
definite phybin-0.3-CJzWVgre87E4ekDr5NQYXB-phybin
depends HUnit-1.6.0.0-C6N9GX1vz2Z4nPL5JbE3ac
depends async-2.2.2-5DAi1Cn34zNFvcR5BQYdDA
depends base-4.12.0.0
depends bytestring-0.10.8.2
depends containers-0.6.0.1
depends directory-1.3.3.0
depends fgl-5.7.0.1-K8Xrf9ill51EZBplFnt9fx
depends filepath-1.4.2.1
depends graphviz-2999.20.0.3-JuD59mWfiRV8QyZZqBg8f3
depends hierarchical-clustering-0.4.6-JAPuhToqBKjAfHC5mOjSQo
depends parsec-3.1.13.0
depends phybin-0.3-DNqARF3AU0I462TSoTIPXZ
depends prettyclass-1.0.0.0-TEwWRphxli3LO8yb54rr0
depends process-1.6.5.0
depends split-0.2.3.3-6n1iQ0JLFvkeXvJXsAqQc
depends text-1.2.3.1
depends time-1.8.0.2
depends vector-0.12.0.3-2LEYu9M2i7lERDtz76XG3n
Using Cabal-2.4.0.1 compiled by ghc-8.6
Using compiler: ghc-8.6.5
Using install prefix: /usr
Executables installed in: /usr/bin
Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.6.5/phybin-0.3-DNqARF3AU0I462TSoTIPXZ
Dynamic Libraries installed in:
/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.6.5
Private executables installed in: /usr/lib/arm-linux-ghc-8.6.5/phybin-0.3
Data files installed in: /usr/share/phybin
Documentation installed in: /usr/share/doc/arm-linux-ghc-8.6.5/phybin-0.3
Configuration files installed in: /usr/etc
No alex found
Using ar found on system at: /usr/bin/arm-linux-gnueabihf-ar
No c2hs found
No cpphs found
No doctest found
Using gcc version 9 found on system at: /usr/bin/arm-linux-gnueabihf-gcc
Using ghc version 8.6.5 found on system at: /usr/bin/ghc
Using ghc-pkg version 8.6.5 found on system at: /usr/bin/ghc-pkg
No ghcjs found
No ghcjs-pkg found
No greencard found
Using haddock version 2.22.0 found on system at: /usr/bin/haddock
No happy found
Using haskell-suite found on system at: haskell-suite-dummy-location
Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location
No hmake found
Using hpc version 0.67 found on system at: /usr/bin/hpc
Using hsc2hs version 0.68.5 found on system at: /usr/bin/hsc2hs
Using hscolour version 1.24 found on system at: /usr/bin/HsColour
No jhc found
Using ld found on system at: /usr/bin/arm-linux-gnueabihf-ld.gold
No pkg-config found
Using runghc version 8.6.5 found on system at: /usr/bin/runghc
Using strip version 2.33 found on system at: /usr/bin/strip
Using tar found on system at: /bin/tar
No uhc found
touch configure-ghc-stamp
. /usr/share/haskell-devscripts/Dh_Haskell.sh && \
build_recipe
Running debian/hlibrary.setup build --builddir=dist-ghc
Running Setup.hs ...
Preprocessing test suite 'test-phybin' for phybin-0.3..
Building test suite 'test-phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
[1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o )
[4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o )
[5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o )
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Linking dist-ghc/build/test-phybin/test-phybin ...
Preprocessing library for phybin-0.3..
Building library for phybin-0.3..
[1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o )
[4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o )
[5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
Preprocessing executable 'phybin' for phybin-0.3..
Building executable 'phybin' for phybin-0.3..
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
[ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o )
Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports]
The qualified import of `Data.Set' is redundant
except perhaps to import instances from `Data.Set'
To import instances alone, use: import Data.Set()
|
37 | import qualified Data.Set as S
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o )
Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs]
Tab character found here, and in five further locations.
Please use spaces instead.
|
81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err)
| ^^^^^^^^
Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In an equation for `loop2':
Patterns not matched:
_ _ (NTLeaf (_, Nothing) _)
_ _ (NTInterior (_, Just _) _)
|
98 | loop2 seen acc (NTLeaf (d,Just nm) _)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns]
Pattern match(es) are non-exhaustive
In a case alternative:
Patterns not matched: (NTInterior (_, Just _) _)
|
122 | case s of
| ^^^^^^^^^^...
[ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o )
[ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o )
[ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o )
Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs]
Tab character found here, and in 13 further locations.
Please use spaces instead.
|
97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion"
| ^^^^^^^^
[ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o )
Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs]
Tab character found here, and in 29 further locations.
Please use spaces instead.
|
247 | tree
| ^^^^^^^^
[ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o )
Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs]
Tab character found here, and in 58 further locations.
Please use spaces instead.
|
60 | ++ "Pretty printing:\n "
| ^^^^^^^^
[ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o )
Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports]
The import of `delete, intersperse, minimumBy'
from module `Data.List' is redundant
|
17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:28:1: warning: [-Wunused-imports]
The import of `filterM' from module `Control.Monad' is redundant
|
28 | import Control.Monad (forM, forM_, filterM, when, unless)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports]
The import of `Control.Applicative' is redundant
except perhaps to import instances from `Control.Applicative'
To import instances alone, use: import Control.Applicative()
|
31 | import Control.Applicative ((<$>),(<*>))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports]
The import of `Control.Concurrent' is redundant
except perhaps to import instances from `Control.Concurrent'
To import instances alone, use: import Control.Concurrent()
|
32 | import Control.Concurrent (Chan)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports]
The import of `doesFileExist, getDirectoryContents'
from module `System.Directory' is redundant
|
35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^...
Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports]
The import of `hClose, openFile'
from module `System.IO' is redundant
|
37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports]
The import of `System.Exit' is redundant
except perhaps to import instances from `System.Exit'
To import instances alone, use: import System.Exit()
|
40 | import System.Exit (ExitCode(..))
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports]
The import of `Test.HUnit' is redundant
except perhaps to import instances from `Test.HUnit'
To import instances alone, use: import Test.HUnit()
|
41 | import Test.HUnit ((~:),(~=?),Test,test)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports]
The qualified import of `Data.GraphViz' is redundant
except perhaps to import instances from `Data.GraphViz'
To import instances alone, use: import Data.GraphViz()
|
43 | import qualified Data.GraphViz as Gv
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports]
The import of `Data.GraphViz.Printing' is redundant
except perhaps to import instances from `Data.GraphViz.Printing'
To import instances alone, use: import Data.GraphViz.Printing()
|
47 | import Data.GraphViz.Printing (renderDot)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:52:1: warning: [-Wunused-imports]
The import of `viewNewickTree'
from module `Bio.Phylogeny.PhyBin.Visualize' is redundant
|
52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs]
Tab character found here, and in 25 further locations.
Please use spaces instead.
|
120 | if reg
| ^^^^^^
[ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o )
[10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o )
Main.hs:151:1: warning: [-Wtabs]
Tab character found here, and in 66 further locations.
Please use spaces instead.
|
151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++
| ^^^^^^^^
Main.hs:263:14: warning:
accepting non-standard pattern guards (use PatternGuards to suppress this message)
Expected _ <- num_taxa cfg
|
263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant"
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
<no location info>: warning: [-Wmissing-home-modules]
These modules are needed for compilation but not listed in your .cabal file's other-modules:
Bio.Phylogeny.PhyBin
Bio.Phylogeny.PhyBin.Binning
Bio.Phylogeny.PhyBin.CoreTypes
Bio.Phylogeny.PhyBin.Parser
Bio.Phylogeny.PhyBin.PreProcessor
Bio.Phylogeny.PhyBin.RFDistance
Bio.Phylogeny.PhyBin.Util
Bio.Phylogeny.PhyBin.Visualize
Paths_phybin
Linking dist-ghc/build/phybin/phybin ...
touch build-ghc-stamp
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85
CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85
Adding cdbs dependencies to debian/phybin.substvars
dh_installdirs -pphybin \
dh_haskell_blurbs "ghc" -pphybin
debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc
Running Setup.hs ...
Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-8.6.5/phybin-0.3-DNqARF3AU0I462TSoTIPXZ
Installing executable phybin in debian/tmp-inst-ghc/usr/bin
Warning: The directory debian/tmp-inst-ghc/usr/bin is not in the system search
path.
dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin
dh_installdocs -pphybin
dh_installexamples -pphybin
dh_installman -pphybin
dh_installinfo -pphybin
dh_installmenu -pphybin
dh_installcron -pphybin
dh_systemd_enable -pphybin
dh_installinit -pphybin
dh_installdebconf -pphybin
dh_installemacsen -pphybin
dh_installcatalogs -pphybin
dh_installpam -pphybin
dh_installlogrotate -pphybin
dh_installlogcheck -pphybin
dh_installchangelogs -pphybin
dh_installudev -pphybin
dh_lintian -pphybin
dh_bugfiles -pphybin
dh_install -pphybin
dh_systemd_start -pphybin
dh_link -pphybin
dh_buildinfo -pphybin
dh_installmime -pphybin
dh_installgsettings -pphybin
dh_strip -pphybin --no-automatic-dbgsym
dh_strip_nondeterminism -pphybin
dh_compress -pphybin -X .haddock -X .hs -X .txt
dh_fixperms -pphybin
dh_makeshlibs -pphybin -XlibHS
dh_installdeb -pphybin
dh_perl -pphybin
dh_shlibdeps -pphybin -- --ignore-missing-info
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/phybin/usr/bin/phybin was not linked against libutil.so.1 (it uses none of the library's symbols)
dh_gencontrol -pphybin
dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined
dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined
dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined
dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined
dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined
dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined
dh_md5sums -pphybin
dh_builddeb -pphybin
dpkg-deb: building package 'phybin' in '../phybin_0.3-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../phybin_0.3-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-04T05:18:36Z
Finished
--------
I: Built successfully
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| Post Build Chroot |
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+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
phybin_0.3-3+b1_armhf.changes:
------------------------------
Format: 1.8
Date: Wed, 19 Dec 2018 21:52:54 +0100
Source: phybin (0.3-3)
Binary: phybin
Binary-Only: yes
Architecture: armhf
Version: 0.3-3+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
phybin - binning/clustering newick trees by topology
Changes:
phybin (0.3-3+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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05231ce209c9be82d7a40b4036e999cf885e6bb1 1855964 phybin_0.3-3+b1_armhf.deb
Checksums-Sha256:
2975d3cc75e82c6ae723b6573d7ce0afff2c2bda53b0a0f7d7aa84c54c006351 7433 phybin_0.3-3+b1_armhf.buildinfo
4379dfc53a0bd1dc1c84824353a5acc83e2b5b2d868a1143e3872f2f4a190ec0 1855964 phybin_0.3-3+b1_armhf.deb
Files:
2be75ea09eb6f87b3dc3d7cd0f048b5a 7433 science optional phybin_0.3-3+b1_armhf.buildinfo
46022372c62f0467e3d57e62e49f65f6 1855964 science optional phybin_0.3-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
phybin_0.3-3+b1_armhf.deb
-------------------------
new Debian package, version 2.0.
size 1855964 bytes: control archive=1076 bytes.
947 bytes, 21 lines control
478 bytes, 7 lines md5sums
Package: phybin
Source: phybin (0.3-3)
Version: 0.3-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 12363
Depends: libatomic1 (>= 4.8), libc6 (>= 2.29), libffi7 (>= 3.3~20180313), libgmp10
Section: science
Priority: optional
Homepage: http://www.cs.indiana.edu/~rrnewton/projects/phybin/
Description: binning/clustering newick trees by topology
PhyBin is a simple command line tool that classifies a set of Newick
tree files by their topology. The purpose of it is to take a large set
of tree files and browse through the most common tree topologies.
.
It can do simple binning of identical trees or more complex clustering
based on an all-to-all Robinson-Foulds distance matrix.
.
phybin produces output files that characterize the size and contents of
each bin or cluster (including generating GraphViz-based visual
representations of the tree topologies).
drwxr-xr-x root/root 0 2018-12-19 20:52 ./
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/bin/
-rwxr-xr-x root/root 12635100 2018-12-19 20:52 ./usr/bin/phybin
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/doc/phybin/
-rw-r--r-- root/root 4091 2018-12-19 20:52 ./usr/share/doc/phybin/buildinfo_armhf.gz
-rw-r--r-- root/root 219 2018-12-19 20:52 ./usr/share/doc/phybin/changelog.Debian.armhf.gz
-rw-r--r-- root/root 375 2018-12-19 20:52 ./usr/share/doc/phybin/changelog.Debian.gz
-rw-r--r-- root/root 2692 2018-12-19 20:52 ./usr/share/doc/phybin/copyright
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/lintian/
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 30 2018-12-19 20:52 ./usr/share/lintian/overrides/phybin
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/man/
drwxr-xr-x root/root 0 2018-12-19 20:52 ./usr/share/man/man1/
-rw-r--r-- root/root 2293 2018-12-19 20:52 ./usr/share/man/man1/phybin.1.gz
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 107936
Build-Time: 1098
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 297
Job: phybin_0.3-3
Machine Architecture: armhf
Package: phybin
Package-Time: 1412
Source-Version: 0.3-3
Space: 107936
Status: successful
Version: 0.3-3+b1
--------------------------------------------------------------------------------
Finished at 2020-02-04T05:18:36Z
Build needed 00:23:32, 107936k disk space