pdb2pqr →
1.8+dfsg-1 →
armhf → 2013-11-04 06:08:45
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-04
╔══════════════════════════════════════════════════════════════════════════════╗
║ pdb2pqr 1.8+dfsg-1 (armhf) 04 Nov 2013 05:56 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: pdb2pqr
Version: 1.8+dfsg-1
Source Version: 1.8+dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/pdb2pqr-lvZdDq/pdb2pqr-1.8+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/pdb2pqr-lvZdDq' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-371f0e7e-7436-4805-8620-d1b71723f919' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [6958 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8086 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.1 MB in 37s (397 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
NOTICE: 'pdb2pqr' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/pdb2pqr/trunk/
Need to get 1205 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main pdb2pqr 1.8+dfsg-1 (dsc) [1568 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main pdb2pqr 1.8+dfsg-1 (tar) [1193 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main pdb2pqr 1.8+dfsg-1 (diff) [10.6 kB]
Fetched 1205 kB in 0s (3206 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-W6MRtC/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded.
Need to get 0 B/706 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11477 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), gfortran, swig, xmlto, openbabel, autoconf, automake, libtool, autotools-dev, python-dev, python-numpy
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), gfortran, swig, xmlto, openbabel, autoconf, automake, libtool, autotools-dev, python-dev, python-numpy
dpkg-deb: building package `sbuild-build-depends-pdb2pqr-dummy' in `/«BUILDDIR»/resolver-ENzu1k/apt_archive/sbuild-build-depends-pdb2pqr-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install pdb2pqr build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autoconf automake autotools-dev bsdmainutils cpp-4.8 debhelper docbook-xml
docbook-xsl file fontconfig-config fonts-dejavu-core g++-4.8 gcc-4.8
gcc-4.8-base gettext gettext-base gfortran gfortran-4.8 groff-base
intltool-debian libasan0 libasprintf0c2 libatomic1 libblas3 libcairo2
libcroco3 libdrm2 libegl1-mesa libexpat1 libexpat1-dev libffi6
libfontconfig1 libfreetype6 libgbm1 libgcc-4.8-dev libgcc1 libgcrypt11
libgfortran-4.8-dev libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0
libgomp1 libgpg-error0 liblapack3 libllvm3.3 libmagic1 libopenbabel4
libpipeline1 libpixman-1-0 libpng12-0 libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libsigsegv2 libsqlite3-0 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtool
libunistring0 libwayland-client0 libwayland-server0 libx11-6 libx11-data
libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shape0
libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3
libxml2 libxml2-utils libxrender1 libxslt1.1 libxxf86vm1 m4 man-db
mime-support openbabel po-debconf python python-dev python-minimal
python-numpy python-support python2.7 python2.7-dev python2.7-minimal
sgml-base sgml-data swig swig2.0 ttf-dejavu-core ucf xml-core xmlto xsltproc
Suggested packages:
autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist
whois vacation gcc-4.8-locales dh-make docbook docbook-dsssl
docbook-defguide dbtoepub docbook-xsl-doc-html docbook-xsl-doc-pdf
docbook-xsl-doc-text docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java
libxalan2-java libxslthl-java xalan gcc-4.8-doc libstdc++6-4.8-dbg
libmudflap0-4.8-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan0-dbg libtsan0-dbg libbacktrace1-dbg libquadmath-dbg libmudflap0-dbg
gettext-doc gfortran-doc gfortran-4.8-doc libgfortran3-dbg groff rng-tools
libstdc++-4.8-doc libtool-doc automaken gcj less www-browser
libmail-box-perl python-doc python-tk python-numpy-doc python-numpy-dbg
python-nose python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs
opensp swig-doc swig-examples swig2.0-examples swig2.0-doc xmltex
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libegl1-mesa-drivers libgl1-mesa-dri libglib2.0-data shared-mime-info
libltdl-dev libmail-sendmail-perl libpaper-utils zip
The following NEW packages will be installed:
autoconf automake autotools-dev bsdmainutils debhelper docbook-xml
docbook-xsl file fontconfig-config fonts-dejavu-core gettext gettext-base
gfortran gfortran-4.8 groff-base intltool-debian libasprintf0c2 libblas3
libcairo2 libcroco3 libdrm2 libegl1-mesa libexpat1 libexpat1-dev libffi6
libfontconfig1 libfreetype6 libgbm1 libgcrypt11 libgfortran-4.8-dev
libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgpg-error0
liblapack3 libllvm3.3 libmagic1 libopenbabel4 libpipeline1 libpixman-1-0
libpng12-0 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsqlite3-0
libssl1.0.0 libtool libunistring0 libwayland-client0 libwayland-server0
libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-glx0
libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-xfixes0 libxcb1 libxdamage1
libxdmcp6 libxext6 libxfixes3 libxml2 libxml2-utils libxrender1 libxslt1.1
libxxf86vm1 m4 man-db mime-support openbabel po-debconf python python-dev
python-minimal python-numpy python-support python2.7 python2.7-dev
python2.7-minimal sbuild-build-depends-pdb2pqr-dummy sgml-base sgml-data
swig swig2.0 ttf-dejavu-core ucf xml-core xmlto xsltproc
The following packages will be upgraded:
cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libasan0 libatomic1 libgcc-4.8-dev
libgcc1 libgomp1 libstdc++-4.8-dev libstdc++6
11 upgraded, 98 newly installed, 0 to remove and 6 not upgraded.
Need to get 96.5 MB/96.5 MB of archives.
After this operation, 177 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libgomp1 armhf 4.8.2-1+rpi1 [27.5 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main gcc-4.8-base armhf 4.8.2-1+rpi1 [151 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libstdc++6 armhf 4.8.2-1+rpi1 [288 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main libasan0 armhf 4.8.2-1+rpi1 [71.7 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libatomic1 armhf 4.8.2-1+rpi1 [6644 B]
Get:6 http://172.17.0.1/private/ jessie-staging/main cpp-4.8 armhf 4.8.2-1+rpi1 [5402 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libstdc++-4.8-dev armhf 4.8.2-1+rpi1 [1801 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main g++-4.8 armhf 4.8.2-1+rpi1 [5845 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main gcc-4.8 armhf 4.8.2-1+rpi1 [5884 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libgcc-4.8-dev armhf 4.8.2-1+rpi1 [318 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libgcc1 armhf 1:4.8.2-1+rpi1 [51.0 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1e-3+rpi1 [1039 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-1 [29.4 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.12-0.2 [78.9 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-2 [296 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libpython2.7-minimal armhf 2.7.5-8+rvt [540 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main mime-support all 3.54 [36.4 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libsqlite3-0 armhf 3.8.0.2-1 [397 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libpython2.7-stdlib armhf 2.7.5-8+rvt [2477 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libpython2.7 armhf 2.7.5-8+rvt [1232 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main python2.7-minimal armhf 2.7.5-8+rvt [1492 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.46-3 [466 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 9.2.2-1 [63.2 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libllvm3.3 armhf 1:3.3-9 [8354 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libwayland-client0 armhf 1.3.0-1 [20.9 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libwayland-server0 armhf 1.3.0-1 [25.2 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.9.1-3 [12.1 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libgbm1 armhf 9.2.2-1 [418 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-1 [125 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-1 [867 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-1 [163 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.9.1-3 [16.8 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxcb-shape0 armhf 1.9.1-3 [10.9 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxcb-xfixes0 armhf 1.9.1-3 [13.8 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libegl1-mesa armhf 9.2.2-1 [74.6 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.11.0-1 [269 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.11.0-1 [330 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.9.1-3 [27.6 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 9.2.2-1 [128 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.30.2-1 [446 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-5 [179 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.9.1-3 [10.4 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.16-2 [998 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.2-1+rpi1 [226 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libexpat1-dev armhf 2.1.0-4 [210 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libpython2.7-dev armhf 2.7.5-8+rvt [22.8 MB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libsigsegv2 armhf 2.10-2 [29.2 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libxslt1.1 armhf 1.1.28-2 [243 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main sgml-base all 1.26+nmu4 [14.6 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-1 [136 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main m4 armhf 1.4.16-5 [245 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main python2.7 armhf 2.7.5-8+rvt [233 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main python-minimal armhf 2.7.5-5 [43.1 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libpython-stdlib armhf 2.7.5-5 [19.8 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main python armhf 2.7.5-5 [180 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main python-support all 1.0.15 [33.6 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main autoconf all 2.69-1.1 [336 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main autotools-dev all 20130810.1 [69.6 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main automake all 1:1.14-1 [718 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-1 [1837 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130921 [688 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main xml-core all 0.13+nmu2 [24.2 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main sgml-data all 2.0.9-1 [281 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main docbook-xml all 4.5-7.2 [347 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main docbook-xsl all 1.78.1+dfsg-1 [2339 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main libgfortran-4.8-dev armhf 4.8.2-1+rpi1 [300 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main gfortran-4.8 armhf 4.8.2-1+rpi1 [5704 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.8.1-3 [1134 B]
Get:95 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-7 [186 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.4.2+dfsg-4 [2288 kB]
Get:97 http://172.17.0.1/private/ jessie-staging/main libopenbabel4 armhf 2.3.2+dfsg-1 [3872 kB]
Get:98 http://172.17.0.1/private/ jessie-staging/main libpython-dev armhf 2.7.5-5 [19.9 kB]
Get:99 http://172.17.0.1/private/ jessie-staging/main libtool armhf 2.4.2-1.3 [617 kB]
Get:100 http://172.17.0.1/private/ jessie-staging/main libxml2-utils armhf 2.9.1+dfsg1-3 [96.4 kB]
Get:101 http://172.17.0.1/private/ jessie-staging/main openbabel armhf 2.3.2+dfsg-1 [271 kB]
Get:102 http://172.17.0.1/private/ jessie-staging/main python2.7-dev armhf 2.7.5-8+rvt [297 kB]
Get:103 http://172.17.0.1/private/ jessie-staging/main python-dev armhf 2.7.5-5 [1088 B]
Get:104 http://172.17.0.1/private/ jessie-staging/main python-numpy armhf 1:1.7.1-3 [1926 kB]
Get:105 http://172.17.0.1/private/ jessie-staging/main swig2.0 armhf 2.0.10-1 [1382 kB]
Get:106 http://172.17.0.1/private/ jessie-staging/main swig armhf 2.0.10-1 [279 kB]
Get:107 http://172.17.0.1/private/ jessie-staging/main xsltproc armhf 1.1.28-2 [119 kB]
Get:108 http://172.17.0.1/private/ jessie-staging/main xmlto armhf 0.0.25-2 [36.0 kB]
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Setting up automake (1:1.14-1) ...
update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.18.3.1-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20130921) ...
Setting up xml-core (0.13+nmu2) ...
Setting up libgfortran-4.8-dev:armhf (4.8.2-1+rpi1) ...
Setting up gfortran-4.8 (4.8.2-1+rpi1) ...
Setting up gfortran (4:4.8.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
Setting up libblas3 (1.2.20110419-7) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up liblapack3 (3.4.2+dfsg-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libopenbabel4 (2.3.2+dfsg-1) ...
Setting up libpython-dev:armhf (2.7.5-5) ...
Setting up libtool (2.4.2-1.3) ...
Setting up libxml2-utils (2.9.1+dfsg1-3) ...
Setting up openbabel (2.3.2+dfsg-1) ...
Setting up python2.7-dev (2.7.5-8+rvt) ...
Setting up python-dev (2.7.5-5) ...
Setting up python-numpy (1:1.7.1-3) ...
Setting up swig2.0 (2.0.10-1) ...
Setting up swig (2.0.10-1) ...
Setting up xsltproc (1.1.28-2) ...
Processing triggers for sgml-base ...
Setting up sgml-data (2.0.9-1) ...
Setting up docbook-xsl (1.78.1+dfsg-1) ...
Processing triggers for sgml-base ...
Setting up docbook-xml (4.5-7.2) ...
Processing triggers for sgml-base ...
Setting up xmlto (0.0.25-2) ...
Setting up sbuild-build-depends-pdb2pqr-dummy (0.invalid.0) ...
Processing triggers for libc-bin ...
Processing triggers for python-support ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.23.90.20130927-1 dpkg-dev_1.16.12 g++-4.8_4.8.2-1+rpi1 gcc-4.8_4.8.2-1+rpi1 libc6-dev_2.17-93 libstdc++-4.8-dev_4.8.2-1+rpi1 libstdc++6_4.8.2-1+rpi1 linux-libc-dev_3.10.1-1+rpi1+b2
Package versions: apt_0.9.11.4+rpi1 autoconf_2.69-1.1 automake_1:1.14-1 autotools-dev_20130810.1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.23.90.20130927-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.1-3 cpp-4.8_4.8.2-1+rpi1 dash_0.5.7-3 debconf_1.5.51 debconf-i18n_1.5.51 debfoster_2.7-1.2 debhelper_9.20130921 debianutils_4.4 diffutils_1:3.3-1 docbook-xml_4.5-7.2 docbook-xsl_1.78.1+dfsg-1 dpkg_1.16.12 dpkg-dev_1.16.12 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-6 fontconfig-config_2.11.0-1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.8.1-3 g++-4.8_4.8.2-1+rpi1 gcc_4:4.8.1-3 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-4+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8_4.8.2-1+rpi1 gcc-4.8-base_4.8.2-1+rpi1 gettext_0.18.3.1-1 gettext-base_0.18.3.1-1 gfortran_4:4.8.1-3 gfortran-4.8_4.8.2-1+rpi1 gnupg_1.4.15-1.1 gpgv_1.4.15-1.1 grep_2.14-4 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.14 initramfs-tools_0.114 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.11.4+rpi1 libasan0_4.8.2-1+rpi1 libasprintf0c2_0.18.3.1-1 libatomic1_4.8.2-1+rpi1 libattr1_1:2.4.47-1 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libc-bin_2.17-93 libc-dev-bin_2.17-93 libc6_2.17-93 libc6-dev_2.17-93 libcairo2_1.12.16-2 libcap2_1:2.22-1.2 libcloog-isl4_0.18.0-2 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.16-1 libdpkg-perl_1.16.12 libdrm2_2.4.46-3 libegl1-mesa_9.2.2-1 libexpat1_2.1.0-4 libexpat1-dev_2.1.0-4 libffi6_3.0.13-4 libfontconfig1_2.11.0-1 libfreetype6_2.4.9-1.1 libgbm1_9.2.2-1 libgc1c2_1:7.2d-5 libgcc-4.8-dev_4.8.2-1+rpi1 libgcc1_1:4.8.2-1+rpi1 libgcrypt11_1.5.3-2 libgdbm3_1.8.3-12 libgfortran-4.8-dev_4.8.2-1+rpi1 libgfortran3_4.8.2-1+rpi1 libgl1-mesa-glx_9.2.2-1 libglapi-mesa_9.2.2-1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.2+dfsg-3 libgomp1_4.8.2-1+rpi1 libgpg-error0_1.12-0.2 libisl10_0.11.2-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack3_3.4.2+dfsg-4 libllvm3.3_1:3.3-9 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.5 libmpc3_1.0.1-1 libmpfr4_3.1.1-2 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libnih-dbus1_1.0.3-4.1+b1 libnih1_1.0.3-4.1+b1 libopenbabel4_2.3.2+dfsg-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpipeline1_1.2.4-1 libpixman-1-0_0.30.2-1 libpng12-0_1.2.49-5 libprocps0_1:3.3.4-2 libpython-dev_2.7.5-5 libpython-stdlib_2.7.5-5 libpython2.7_2.7.5-8+rvt libpython2.7-dev_2.7.5-8+rvt libpython2.7-minimal_2.7.5-8+rvt libpython2.7-stdlib_2.7.5-8+rvt libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-3+rpi1 libsemanage-common_2.1.10-3+rpi1 libsemanage1_2.1.10-3+rpi1 libsepol1_2.1.9-2 libsigsegv2_2.10-2 libslang2_2.2.4-15 libsqlite3-0_3.8.0.2-1 libss2_1.42.8-1 libssl1.0.0_1.0.1e-3+rpi1 libstdc++-4.8-dev_4.8.2-1+rpi1 libstdc++6_4.8.2-1+rpi1 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libtool_2.4.2-1.3 libudev1_204-5 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libwayland-client0_1.3.0-1 libwayland-server0_1.3.0-1 libx11-6_2:1.6.2-1 libx11-data_2:1.6.2-1 libx11-xcb1_2:1.6.2-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.9.1-3 libxcb-glx0_1.9.1-3 libxcb-render0_1.9.1-3 libxcb-shape0_1.9.1-3 libxcb-shm0_1.9.1-3 libxcb-xfixes0_1.9.1-3 libxcb1_1.9.1-3 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxml2_2.9.1+dfsg1-3 libxml2-utils_2.9.1+dfsg1-3 libxrender1_1:0.9.8-1 libxslt1.1_1.1.28-2 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.10.1-1+rpi1+b2 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 m4_1.4.16-5 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mime-support_3.54 mount_2.20.1-5.5 mountall_2.52 multiarch-support_2.17-93 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 openbabel_2.3.2+dfsg-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.18.1-4 perl-base_5.18.1-4 perl-modules_5.18.1-4 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 python_2.7.5-5 python-dev_2.7.5-5 python-minimal_2.7.5-5 python-numpy_1:1.7.1-3 python-support_1.0.15 python2.7_2.7.5-8+rvt python2.7-dev_2.7.5-8+rvt python2.7-minimal_2.7.5-8+rvt raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pdb2pqr-dummy_0.invalid.0 sed_4.2.2-2 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sgml-data_2.0.9-1 swig_2.0.10-1 swig2.0_2.0.10-1 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013d-1 ucf_3.0027+nmu1 udev_204-5 util-linux_2.20.1-5.5 xml-core_0.13+nmu2 xmlto_0.0.25-2 xsltproc_1.1.28-2 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Oct 24 08:46:08 2013 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./pdb2pqr_1.8+dfsg-1.dsc
dpkg-source: info: extracting pdb2pqr in pdb2pqr-1.8+dfsg
dpkg-source: info: unpacking pdb2pqr_1.8+dfsg.orig.tar.xz
dpkg-source: info: unpacking pdb2pqr_1.8+dfsg-1.debian.tar.gz
dpkg-source: info: applying fix-includes.patch
dpkg-source: info: applying fix-hashbangs.patch
dpkg-source: info: applying fix-hurd.patch
dpkg-source: info: applying fix-hardening.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-371f0e7e-7436-4805-8620-d1b71723f919
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 43532 22
SSH_CONNECTION=172.17.0.6 43532 172.17.2.4 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=root
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package pdb2pqr
dpkg-buildpackage: source version 1.8+dfsg-1
dpkg-source --before-build pdb2pqr-1.8+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --with autotools_dev
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
( cd pdb2pka && \
if [ -e pMC_mult_wrap.cpp.saved ]; then mv pMC_mult_wrap.cpp.saved pMC_mult_wrap.cpp; fi && \
if [ -e pMC_mult.py.saved ]; then mv pMC_mult.py.saved pMC_mult.py; fi )
dh_auto_clean
make[1]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_autotools-dev_restoreconfig
dh_clean
debian/rules build-arch
dh build-arch --with python2 --with autotools_dev
dh_testdir -a
dh_autotools-dev_updateconfig -a
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_auto_configure
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking target system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for python... /usr/bin/python
checking for python include directory... -I/usr/include/python2.7
checking for--disable-pdb2pka... no
------------- Begin Processing pdb2pka Configure Options -----------
checking whether you defined Numeric or Numpy... no
checking for Numeric include files... no
checking whether you defined numpy... no
/usr/bin/python: can't open file './contrib/numpy-1.1.0/setup.py': [Errno 2] No such file or directory
checking for numpy includes files... -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy
------------- End Processing pdb2ka Configure Options -----------
checking for tmp/... no
checking for OpenBabel...
OpenBabel found in /usr/bin/babel, you can use OpenBabel to generate MOL2 files.
------------- End Processing PDB2PQR Configure Options -----------
configure: creating ./config.status
config.status: creating Makefile
config.status: creating pdb2pka/Makefile
config.status: creating pdb2pka/substruct/Makefile
config.status: creating tests/Makefile
config.status: creating tests/test/Makefile
config.status: creating tests/adv-test/Makefile
config.status: creating tests/test-long/Makefile
config.status: creating tests/test-webserver/Makefile
config.status: creating tests/local-test/Makefile
config.status: executing depfiles commands
---------------------------------------------------------------------------------------
Please run "make" followed by "make install" to complete the installation. You may also run "make test" or "make adv-test".
========================
Configuration Parameters
========================
User ID: buildd
Version: 1.8
Install Dir: /usr/
pdb2pka: enable
PY_CFLAGS: -I/usr/include/python2.7 -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy
WEBSITE (path to the website directory): http://bm-wb-04/pdb2pqr/
(WEBSITE can be changed with the --with-url option)
PDB2PQR_CGI (path to pdb2pqr.cgi): http://bm-wb-04/pdb2pqr/pdb2pqr.cgi
PDB2PQR jobs will be forked on the server
MAX_ATOMS (max number of atoms in a protein): 10000
As a regular user, you must ask your system administrator to create a symbolic link that enables you to view http://bm-wb-04/pdb2pqr/ after you run "make install"
( cd pdb2pka && \
cp -a pMC_mult_wrap.cpp pMC_mult_wrap.cpp.saved && \
cp -a pMC_mult.py pMC_mult.py.saved && \
swig -c++ -python -o pMC_mult_wrap.cpp pMC_mult.i )
make[1]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_auto_build -a
make[1]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
Making all in pdb2pka
make[2]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka'
cd .. && make am--refresh
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in substruct
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka/substruct'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -I/usr/include/python2.7 -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o Algorithms.o Algorithms.cpp
In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1728:0,
from /usr/include/python2.7/numpy/ndarrayobject.h:17,
from /usr/include/python2.7/numpy/arrayobject.h:15,
from Algorithms.cpp:43:
/usr/include/python2.7/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
^
g++ -o Algorithms.so -shared Algorithms.o
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka/substruct'
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka'
cd .. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -I/usr/include/python2.7 -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o pMC_mult.o pMC_mult.cpp
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -I/usr/include/python2.7 -I/usr/numpy/lib/python2.7/site-packages/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o pMC_mult_wrap.o pMC_mult_wrap.cpp
g++ -o _pMC_mult.so -shared pMC_mult.o pMC_mult_wrap.o
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka'
make[2]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/pdb2pka'
Making all in tests
make[2]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests'
cd .. && make am--refresh
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in test
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in .
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test'
cd ../.. && make am--refresh
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o test.o test.cpp
test.cpp: In function 'int main()':
test.cpp:36:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-correct.pqr could not be opened");
^
test.cpp:39:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-user.pqr could not be opened");
^
test.cpp:52:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Found a difference in REMARK in the PQR files");
^
test.cpp:103:110: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Simple test failed because the user's PQR output file contains the wrong number of data items");
^
test.cpp:106:119: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Simple test failed because the numbers in the user PQR output file and the expected values are too big");
^
g++ -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -o simpletest test.o
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test'
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test'
Making all in adv-test
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/adv-test'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in .
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/adv-test'
cd ../.. && make am--refresh
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o test.o test.cpp
test.cpp: In function 'int main()':
test.cpp:44:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-user.pqr could not be opened");
^
test.cpp:47:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-user.propka could not be opened");
^
test.cpp:59:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Found a difference in REMARK in the PQR files");
^
test.cpp:84:112: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Advanced test failed because the user's PQR output file contains the wrong number of data items");
^
test.cpp:87:121: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Advanced test failed because the numbers in the user PQR output file and the expected values are too big");
^
test.cpp:98:70: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Propka files produced different numbers of fields");
^
test.cpp:119:124: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Advanced test failed because the numbers in the user PROPKA output file and the expected values are too big");
^
test.cpp:122:116: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Advanced test failed because the size ofyour propka output file is different from the expected size");
^
g++ -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -o advtest test.o
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/adv-test'
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/adv-test'
Making all in test-long
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-long'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in .
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-long'
cd ../.. && make am--refresh
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-long'
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-long'
Making all in local-test
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/local-test'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in .
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/local-test'
cd ../.. && make am--refresh
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
g++ -DPACKAGE_NAME=\"PDB2PQR\" -DPACKAGE_TARNAME=\"pdb2pqr\" -DPACKAGE_VERSION=\"1.8\" -DPACKAGE_STRING=\"PDB2PQR\ 1.8\" -DPACKAGE_BUGREPORT=\"baker@biochem.wustl.edu\" -DPACKAGE=\"PDB2PQR\" -DVERSION=\"1.8\" -I. -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -c -o test.o test.cpp
test.cpp: In function 'int main()':
test.cpp:36:60: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-correct.pqr could not be opened");
^
test.cpp:39:57: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("test-output-user.pqr could not be opened");
^
test.cpp:52:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Found a difference in REMARK in the PQR files");
^
test.cpp:103:109: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Local test failed because the user's PQR output file contains the wrong number of data items");
^
test.cpp:106:118: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
error_msg("Local test failed because the numbers in the user PQR output file and the expected values are too big");
^
g++ -g -O2 -fPIC -I/usr/share/pyshared/numpy/core/include/numpy -o localtest test.o
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/local-test'
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/local-test'
Making all in test-webserver
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-webserver'
cd ../.. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
Making all in .
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-webserver'
cd ../.. && make am--refresh
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[5]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[5]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-webserver'
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests/test-webserver'
Making all in .
make[3]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests'
cd .. && make am--refresh
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[4]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[4]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests'
make[2]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg/tests'
make[2]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
cd . && :
cd . && : --gnu
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
make[1]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --with autotools_dev
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
for app in /usr/share/pdb2pqr/pdb2pqr.py /usr/share/pdb2pqr/src/psize.py; do \
sed -e "s,@SCRIPT@,${app}," debian/wrapper.sh \
>debian/pdb2pqr/usr/bin/$(basename ${app} .py) && \
chmod 0755 debian/pdb2pqr/usr/bin/$(basename ${app} .py); \
done
for app in /usr/share/pdb2pqr/propka30/propka.py; do \
sed -e "s,@SCRIPT@,${app}," debian/wrapper.sh \
>debian/pdb2pqr/usr/bin/$(basename ${app} .py) && \
chmod 0755 debian/pdb2pqr/usr/bin/$(basename ${app} .py); \
done
xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/pdb2pqr.1.xml
Note: Writing pdb2pqr.1
xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/psize.1.xml
Note: Writing psize.1
xmlto -o debian/pdb2pqr/usr/share/man/man1/ man debian/propka.1.xml
Note: Writing propka.1
make[1]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_python2 -a
dh_perl -a
dh_link -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_fixperms
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main.py
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/main_cgi.py
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/ligandclean/__init__.py
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pka_routines.py
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKaIO_compat.py
chmod 0644 debian/pdb2pqr/usr/share/pdb2pqr/pdb2pka/pKa_utility_functions_compat.py
chmod 0755 debian/pdb2pqr/usr/share/pdb2pqr/propka30/propka.py
make[1]: Leaving directory `/«BUILDDIR»/pdb2pqr-1.8+dfsg'
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package pdb2pqr: unknown substitution variable ${python:Versions}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `pdb2pqr' in `../pdb2pqr_1.8+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../pdb2pqr_1.8+dfsg-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build pdb2pqr-1.8+dfsg
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20131104-0610
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
pdb2pqr_1.8+dfsg-1_armhf.changes:
─────────────────────────────────
Format: 1.8
Date: Thu, 24 Oct 2013 09:34:23 +0200
Source: pdb2pqr
Binary: pdb2pqr pdb2pqr-doc
Architecture: armhf
Version: 1.8+dfsg-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
pdb2pqr - Preparation of protein structures for electrostatics calculations
pdb2pqr-doc - example files accompanying pdb2pqr
Closes: 674976 727491
Changes:
pdb2pqr (1.8+dfsg-1) unstable; urgency=low
.
[ Manuel Prinz ]
* Fixed build issues on HURD. Thanks to Barry deFreese for the patch!
Closes: 674976.
* Pass hardening flags to linker. Added fix-hardening.patch, changed
debian/rules.
.
[ Andreas Tille ]
* Use '+dfsg' appendix to mark repackaged upstream source (adapted
debian/watch)
* debian/rules:
- repackaging is done using enhanced uscan
- s/autotools-dev/autotools_dev/
Closes: #727491
* debian/control:
- cme fix dpkg-control
- canonical Vcs fields
* debian/copyright: DEP5
Checksums-Sha1:
18e1218ed5dd02f0fbe491e82e706f2f0426f6c4 444034 pdb2pqr_1.8+dfsg-1_armhf.deb
Checksums-Sha256:
c71d2238661d89230bdb43ba13c8d7f23df7c1ceb35f189a1d394091f1af7ff8 444034 pdb2pqr_1.8+dfsg-1_armhf.deb
Files:
52bb9b05cbad47c2369c21664a801f5c 444034 science optional pdb2pqr_1.8+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
pdb2pqr_1.8+dfsg-1_armhf.deb
────────────────────────────
new debian package, version 2.0.
size 444034 bytes: control archive=4740 bytes.
1354 bytes, 29 lines control
9027 bytes, 124 lines md5sums
182 bytes, 9 lines * postinst #!/bin/sh
251 bytes, 14 lines * prerm #!/bin/sh
Package: pdb2pqr
Version: 1.8+dfsg-1
Architecture: armhf
Maintainer: Debian Med <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2249
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), python:any (>= 2.6.6-7~), python2.7:any, python-numpy
Suggests: apbs
Enhances: autodocktools
Conflicts: propka
Replaces: propka
Provides: propka
Section: science
Priority: optional
Homepage: http://pdb2pqr.poissonboltzmann.org/pdb2pqr/
Description: Preparation of protein structures for electrostatics calculations
PDB2PQR is a Python software package that automates many of the common
tasks of preparing structures for continuum electrostatics calculations.
It thus provides a platform-independent utility for converting protein files
in PDB format to PQR format. These tasks include:
* Adding a limited number of missing heavy atoms to biomolecular structures
* Determining side-chain pKas
* Placing missing hydrogens
* Optimizing the protein for favorable hydrogen bonding
* Assigning charge and radius parameters from a variety of force fields
.
This package also includes PropKa, a tool to modify the protonation state of
protein structures in the Protein Data Bank (PDB) format to match a given pKa
value. It can also be used to refine NMR structures, which often yield
inaccurate pKa values for some residues.
drwxr-xr-x root/root 0 2013-11-04 06:10 ./
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/bin/
-rwxr-xr-x root/root 124 2013-11-04 06:09 ./usr/bin/pdb2pqr
-rwxr-xr-x root/root 126 2013-11-04 06:09 ./usr/bin/psize
-rwxr-xr-x root/root 132 2013-11-04 06:09 ./usr/bin/propka
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/lib/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/lib/pdb2pqr/
drwxr-xr-x root/root 0 2013-11-04 06:10 ./usr/lib/pdb2pqr/pdb2pka/
drwxr-xr-x root/root 0 2013-11-04 06:10 ./usr/lib/pdb2pqr/pdb2pka/substruct/
-rw-r--r-- root/root 10716 2013-11-04 06:10 ./usr/lib/pdb2pqr/pdb2pka/substruct/Algorithms.so
-rw-r--r-- root/root 237784 2013-11-04 06:10 ./usr/lib/pdb2pqr/pdb2pka/_pMC_mult.so
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/doc/pdb2pqr/
-rw-r--r-- root/root 30 2005-05-25 14:55 ./usr/share/doc/pdb2pqr/AUTHORS
-rw-r--r-- root/root 1401 2012-01-24 21:17 ./usr/share/doc/pdb2pqr/ChangeLog
-rw-r--r-- root/root 183 2009-10-21 19:12 ./usr/share/doc/pdb2pqr/README
-rw-r--r-- root/root 489 2012-06-21 14:21 ./usr/share/doc/pdb2pqr/README.Debian
-rw-r--r-- root/root 5174 2013-10-24 08:00 ./usr/share/doc/pdb2pqr/copyright
-rw-r--r-- root/root 172 2005-08-19 15:07 ./usr/share/doc/pdb2pqr/NEWS.gz
-rw-r--r-- root/root 845 2013-10-24 08:44 ./usr/share/doc/pdb2pqr/changelog.Debian.gz
-rw-r--r-- root/root 754 2012-01-24 21:17 ./usr/share/doc/pdb2pqr/changelog.gz
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/man/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/man/man1/
-rw-r--r-- root/root 2083 2013-11-04 06:09 ./usr/share/man/man1/pdb2pqr.1.gz
-rw-r--r-- root/root 1252 2013-11-04 06:09 ./usr/share/man/man1/psize.1.gz
-rw-r--r-- root/root 1044 2013-11-04 06:09 ./usr/share/man/man1/propka.1.gz
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/pdb2pqr/
drwxr-xr-x root/root 0 2013-11-04 06:09 ./usr/share/pdb2pqr/dat/
-rw-r--r-- root/root 58175 2010-12-16 17:02 ./usr/share/pdb2pqr/dat/AA.xml
-rw-r--r-- root/root 60679 2007-11-07 16:36 ./usr/share/pdb2pqr/dat/AMBER.DAT
-rw-r--r-- root/root 2290 2008-06-20 18:05 ./usr/share/pdb2pqr/dat/AMBER.names
-rw-r--r-- root/root 64231 2008-05-06 16:32 ./usr/share/pdb2pqr/dat/CHARMM.DAT
-rw-r--r-- root/root 6846 2009-02-02 21:22 ./usr/share/pdb2pqr/dat/CHARMM.names
-rw-r--r-- root/root 4484 2010-12-16 17:02 ./usr/share/pdb2pqr/dat/HYDROGENS.xml
-rw-r--r-- root/root 33835 2010-12-16 17:02 ./usr/share/pdb2pqr/dat/NA.xml
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 17324
Build-Time: 154
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 622
Job: pdb2pqr_1.8+dfsg-1
Machine Architecture: armhf
Package: pdb2pqr
Package-Time: 837
Source-Version: 1.8+dfsg-1
Space: 17324
Status: successful
Version: 1.8+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20131104-0610
Build needed 00:13:57, 17324k disc space