Raspbian Package Auto-Building

Build log for pbdagcon (0.3+20161121+ds-1) on armhf

pbdagcon0.3+20161121+ds-1armhf → 2017-01-01 08:49:18

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| pbdagcon 0.3+20161121+ds-1 (armhf)           Sun, 01 Jan 2017 08:34:00 +0000 |
+==============================================================================+

Package: pbdagcon
Version: 0.3+20161121+ds-1
Source Version: 0.3+20161121+ds-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e505fcf8-bd38-4239-9dc4-f87386ca5f1c' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9696 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.6 MB]
Fetched 21.3 MB in 23s (919 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'pbdagcon' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/pbdagcon.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/pbdagcon.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 263 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main pbdagcon 0.3+20161121+ds-1 (dsc) [2097 B]
Get:2 http://172.17.0.1/private stretch-staging/main pbdagcon 0.3+20161121+ds-1 (tar) [256 kB]
Get:3 http://172.17.0.1/private stretch-staging/main pbdagcon 0.3+20161121+ds-1 (diff) [4872 B]
Fetched 263 kB in 0s (3088 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbdagcon-Hl8jwY/pbdagcon-0.3+20161121+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbdagcon-Hl8jwY' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-la0YUd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-la0YUd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-la0YUd/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (3565 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 52 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), python, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev, libpbbam-dev, googletest
Filtered Build-Depends: debhelper (>= 10), python, zlib1g-dev, libhdf5-dev, libboost-dev, libtclap-dev, libpbseq-dev, libpbbam-dev, googletest
dpkg-deb: building package 'sbuild-build-depends-pbdagcon-dummy' in '/<<BUILDDIR>>/resolver-la0YUd/apt_archive/sbuild-build-depends-pbdagcon-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-pbdagcon-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Sources [537 B]
Get:5 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ Packages [617 B]
Fetched 2487 B in 0s (3380 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install pbdagcon build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base googletest
  groff-base hdf5-helpers intltool-debian libaec-dev libaec0
  libarchive-zip-perl libblasr libblasr-dev libboost-dev libboost1.62-dev
  libbsd0 libcroco3 libcurl3-gnutls libexpat1 libffi6
  libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgnutls30
  libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhogweed4 libhts1
  libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common
  libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpbbam
  libpbbam-dev libpbdata libpbdata-dev libpbihdf libpbihdf-dev libpbseq-dev
  libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2
  libssl1.1 libsz2 libtasn1-6 libtclap-dev libtool libunistring0 libxml2 m4
  man-db mime-support po-debconf python python-minimal python2.7
  python2.7-minimal zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libboost-doc libboost1.62-doc libboost-atomic1.62-dev
  libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-filesystem1.62-dev libboost-graph1.62-dev
  libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
  libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
  libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-regex1.62-dev
  libboost-serialization1.62-dev libboost-signals1.62-dev
  libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev
  libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev
  libboost1.62-tools-dev libmpfrc++-dev libntl-dev gnutls-bin krb5-doc
  krb5-user libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk less
  www-browser libmail-box-perl python-doc python-tk python2.7-doc
  binfmt-support
Recommended packages:
  curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
  xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base googletest
  groff-base hdf5-helpers intltool-debian libaec-dev libaec0
  libarchive-zip-perl libblasr libblasr-dev libboost-dev libboost1.62-dev
  libbsd0 libcroco3 libcurl3-gnutls libexpat1 libffi6
  libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgnutls30
  libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhogweed4 libhts1
  libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common
  libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0 libpbbam
  libpbbam-dev libpbdata libpbdata-dev libpbihdf libpbihdf-dev libpbseq-dev
  libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
  librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2
  libssl1.1 libsz2 libtasn1-6 libtclap-dev libtool libunistring0 libxml2 m4
  man-db mime-support po-debconf python python-minimal python2.7
  python2.7-minimal sbuild-build-depends-pbdagcon-dummy zlib1g-dev
The following packages will be upgraded:
  zlib1g
1 upgraded, 86 newly installed, 0 to remove and 51 not upgraded.
Need to get 42.7 MB/44.0 MB of archives.
After this operation, 250 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-la0YUd/apt_archive ./ sbuild-build-depends-pbdagcon-dummy 0.invalid.0 [822 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-4 [81.6 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.13-1 [389 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.13-1 [1180 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.13-1 [40.5 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.13-1 [1828 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.13-1 [285 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.13-1 [19.9 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.13-1 [154 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-2 [221 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-2 [104 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-2 [63.1 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.7-3 [816 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.15-1 [57.9 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15-1 [115 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15-1 [262 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15-1 [132 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-1 [66.7 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-1 [97.9 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libldap-common all 2.4.44+dfsg-2+rpi1 [84.5 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-2+rpi1 [195 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf googletest armhf 1.8.0-5 [652 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-3 [35.9 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libaec0 armhf 0.3.2-1 [19.4 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libpbdata armhf 0~20160705-1+b1 [104 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.1-5+rpi1 [166 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libsz2 armhf 0.3.2-1 [5836 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-3 [1203 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-3 [118 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libpbihdf armhf 0~20160705-1+b1 [103 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libblasr armhf 0~20160705-1+b1 [792 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libblasr-dev armhf 0~20160705-1+b1 [1628 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libboost-dev armhf 1.62.0.1 [3632 B]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.17.0-1 [70.1 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.51.0-1 [254 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-4 [198 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.1-2 [181 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.5.1-2 [56.1 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libaec-dev armhf 0.3.2-1 [17.6 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-3 [2093 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.2-1+rpi1 [215 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libpbbam armhf 0.1.0~20150813+git4e9e417+dfsg-1 [270 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libpbbam-dev armhf 0.1.0~20150813+git4e9e417+dfsg-1 [52.0 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libpbdata-dev armhf 0~20160705-1+b1 [175 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libpbihdf-dev armhf 0~20160705-1+b1 [194 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libpbseq-dev all 0~20160705-1 [3806 B]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libtclap-dev armhf 1.2.1-1 [727 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 42.7 MB in 4s (8654 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../0-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../1-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../2-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../3-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Preparing to unpack .../4-zlib1g_1%3a1.2.8.dfsg-4_armhf.deb ...
Unpacking zlib1g:armhf (1:1.2.8.dfsg-4) over (1:1.2.8.dfsg-2+b1) ...
Setting up zlib1g:armhf (1:1.2.8.dfsg-4) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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No schema files found: doing nothing.
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Setting up python2.7 (2.7.13-1) ...
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update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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Setting up libcurl3-gnutls:armhf (7.51.0-1) ...
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Setting up libpbbam-dev (0.1.0~20150813+git4e9e417+dfsg-1) ...
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Setting up debhelper (10.2.2) ...
Setting up sbuild-build-depends-pbdagcon-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.1.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 googletest_1.8.0-5 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-9 gzip_1.6-5 hdf5-helpers_1.10.0-patch1+docs-3 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libaec-dev_0.3.2-1 libaec0_0.3.2-1 libapparmor1_2.10.95-6 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblasr_0~20160705-1+b1 libblasr-dev_0~20160705-1+b1 libblkid1_2.29-1 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libcurl3-gnutls_7.51.0-1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libexpat1_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libgfortran3_6.2.1-5+rpi1 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.7-3 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libgssapi-krb5-2_1.15-1 libhdf5-100_1.10.0-patch1+docs-3 libhdf5-cpp-100_1.10.0-patch1+docs-3 libhdf5-dev_1.10.0-patch1+docs-3 libhogweed4_3.3-1 libhts1_1.3.2-1+rpi1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_23-1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-2+rpi1 libldap-common_2.4.44+dfsg-2+rpi1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.3-1 libnghttp2-14_1.17.0-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpbbam_0.1.0~20150813+git4e9e417+dfsg-1 libpbbam-dev_0.1.0~20150813+git4e9e417+dfsg-1 libpbdata_0~20160705-1+b1 libpbdata-dev_0~20160705-1+b1 libpbihdf_0~20160705-1+b1 libpbihdf-dev_0~20160705-1+b1 libpbseq-dev_0~20160705-1 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.13-1 libpython2.7-minimal_2.7.13-1 libpython2.7-stdlib_2.7.13-1 libreadline7_7.0-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.1-5 libsmartcols1_2.29-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2j-4 libssl1.1_1.1.0c-2 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsystemd0_232-6 libsz2_0.3.2-1 libtasn1-6_4.9-4 libtclap-dev_1.2.1-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.29-1 multiarch-support_2.24-7+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-1 python-minimal_2.7.13-1 python2.7_2.7.13-1 python2.7-minimal_2.7.13-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbdagcon-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4 zlib1g-dev_1:1.2.8.dfsg-4

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 21 09:25:57 2016 UTC
gpgv:                using RSA key 59B2306F3AF9DDC1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbdagcon_0.3+20161121+ds-1.dsc
dpkg-source: info: extracting pbdagcon in /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds
dpkg-source: info: unpacking pbdagcon_0.3+20161121+ds.orig.tar.gz
dpkg-source: info: unpacking pbdagcon_0.3+20161121+ds-1.debian.tar.xz
dpkg-source: info: applying compiler-flags.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e505fcf8-bd38-4239-9dc4-f87386ca5f1c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package pbdagcon
dpkg-buildpackage: info: source version 0.3+20161121+ds-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build pbdagcon-0.3+20161121+ds
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
make -C src/cpp clean
make[2]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/src/cpp'
rm -f *.d
rm -f *.o
rm -f pbdagcon
rm -f dazcon
make[2]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/src/cpp'
make -C test/cpp clean
make[2]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/test/cpp'
rm -f .//*.o
rm -f *.o
rm -f test_*
make[2]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/test/cpp'
make[1]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
   dh_autoreconf_clean
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
./configure.py --shared
uname -s
uname='Linux'
writing to '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/defines.mk'
"""
DALIGNER_INCLUDE     ?= ${DALIGNER_SRC}
DALIGNER_SRC         ?= /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER
DAZZ_DB_INCLUDE      ?= ${DAZZ_DB_SRC}
DAZZ_DB_SRC          ?= /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB
GTEST_INCLUDE        ?= /usr/src/googletest/googletest/include
GTEST_SRC            ?= /usr/src/googletest/googletest/src
HDF5_LIB             ?= /usr/lib/arm-linux-gnueabihf/hdf5/serial
HDF5_LIBFLAGS        ?= -lhdf5_cpp -lhdf5
HTSLIB_LIBFLAGS      ?= -lhts
LIBBLASR_INCLUDE     ?= /usr/include/pbseq/alignment
LIBBLASR_LIBFLAGS    ?= -lblasr
LIBPBDATA_INCLUDE    ?= /usr/include/pbseq/pbdata
LIBPBDATA_LIBFLAGS   ?= -lpbdata
LIBPBIHDF_INCLUDE    ?= /usr/include/pbseq/hdf
LIBPBIHDF_LIBFLAGS   ?= -lpbihdf
PBBAM_LIBFLAGS       ?= -lpbbam
PTHREAD_LIBFLAGS     ?= -lpthread
ZLIB_LIBFLAGS        ?= -lz
LDLIBS+=-lrt
"""
make[1]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
   dh_auto_build -a
	make -j4
make[1]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
make -C src/cpp
make[2]: Entering directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/src/cpp'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o Alignment.o Alignment.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o AlnGraphBoost.o AlnGraphBoost.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o BlasrM5AlnProvider.o BlasrM5AlnProvider.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o main.o main.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o SimpleAligner.o SimpleAligner.cpp
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o DB.o /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/DB.c
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/DB.c: In function 'Load_QVs':
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/DB.c:888:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
         fscanf(istub,DB_NFILE,&nfiles);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/DB.c:892:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
           { fscanf(istub,DB_FDATA,&last,fname,prolog);
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/DB.c:897:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
           { fscanf(istub,DB_FDATA,&last,fname,prolog);
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o QV.o /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/QV.c
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/QV.c: In function 'Build_Table':
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     { uint64 symbol = (uint64) (node->lft);
                       ^
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/QV.c: In function 'Huffman':
/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB/QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
             node[value].lft   = (HTree *) (uint64) i;
                                 ^
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o align.o /<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER/align.c
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o DazAlnProvider.o DazAlnProvider.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++11 -Wall -Wuninitialized -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MP -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DAZZ_DB -I/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata -I/usr/include/pbseq/hdf -isystem.//third-party  -c -o dazcon.o dazcon.cpp
g++ -o pbdagcon Alignment.o AlnGraphBoost.o BlasrM5AlnProvider.o main.o SimpleAligner.o -Wl,-z,relro -L /usr/lib/arm-linux-gnueabihf/hdf5/serial  -lrt -lblasr -lpbdata -lpbihdf -lpbbam -lhdf5_cpp -lhdf5 -lhts -lz -lpthread 
/usr/bin/ld: cannot find -lhts
collect2: error: ld returned 1 exit status
makefile:60: recipe for target 'pbdagcon' failed
make[2]: *** [pbdagcon] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds/src/cpp'
makefile:34: recipe for target 'cpp' failed
make[1]: *** [cpp] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/pbdagcon-0.3+20161121+ds'
dh_auto_build: make -j4 returned exit code 2
debian/rules:20: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-01-01T08:47:02Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 270
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 468
Job: pbdagcon_0.3+20161121+ds-1
Machine Architecture: armhf
Package: pbdagcon
Package-Time: 782
Source-Version: 0.3+20161121+ds-1
Space: 0
Status: failed
Version: 0.3+20161121+ds-1
--------------------------------------------------------------------------------
Finished at 2017-01-01T08:47:02Z
Build needed 00:00:00, 0k disc space