pbcopper →
1.3.0+dfsg-3 →
armhf → 2020-02-04 11:10:03
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| pbcopper 1.3.0+dfsg-3 (armhf) Tue, 04 Feb 2020 10:58:14 +0000 |
+==============================================================================+
Package: pbcopper
Version: 1.3.0+dfsg-3
Source Version: 1.3.0+dfsg-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-95549aa9-6dbc-4fd4-82db-304f623ab60e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.2 MB in 10s (2525 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'pbcopper' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/pbcopper.git
Please use:
git clone https://salsa.debian.org/med-team/pbcopper.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 291 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main pbcopper 1.3.0+dfsg-3 (dsc) [2130 B]
Get:2 http://172.17.0.1/private bullseye-staging/main pbcopper 1.3.0+dfsg-3 (tar) [248 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main pbcopper 1.3.0+dfsg-3 (diff) [41.3 kB]
Fetched 291 kB in 0s (1490 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/pbcopper-ebYHhq/pbcopper-1.3.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pbcopper-ebYHhq' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-DvGSKj/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-DvGSKj/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-DvGSKj/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (9954 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12214 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev
Filtered Build-Depends: debhelper-compat (= 12), meson, cmake, pkg-config, libboost-dev, googletest, libgtest-dev
dpkg-deb: building package 'sbuild-build-depends-pbcopper-dummy' in '/<<BUILDDIR>>/resolver-DvGSKj/apt_archive/sbuild-build-depends-pbcopper-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pbcopper-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Sources [533 B]
Get:5 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ Packages [614 B]
Fetched 2480 B in 0s (11.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install pbcopper build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base googletest groff-base intltool-debian libarchive-zip-perl
libarchive13 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev
libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpipeline1
libprocps7 libpsl5 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2 m4 man-db
meson mime-support ninja-build pkg-config po-debconf procps python3
python3-minimal python3.7 python3.7-minimal sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff lrzip libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python3.7-venv python3.7-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base googletest groff-base intltool-debian libarchive-zip-perl
libarchive13 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev
libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpipeline1
libprocps7 libpsl5 libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib librhash0 librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2 m4 man-db
meson mime-support ninja-build pkg-config po-debconf procps python3
python3-minimal python3.7 python3.7-minimal
sbuild-build-depends-pbcopper-dummy sensible-utils
0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded.
Need to get 40.7 MB of archives.
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Get:1 copy:/<<BUILDDIR>>/resolver-DvGSKj/apt_archive ./ sbuild-build-depends-pbcopper-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
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Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
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Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
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Get:20 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
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Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
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Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.15.4-1+rpi1 [1580 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-1+b1 [292 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
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Get:44 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.67.0-2 [284 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.33.1-3 [112 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.15.4-1+rpi1 [2540 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1+rpi1 [1137 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf googletest all 1.10.0-2 [626 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgtest-dev armhf 1.10.0-2 [218 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf ninja-build armhf 1.10.0-1 [90.4 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf meson all 0.52.1-1 [358 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
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Not building database; man-db/auto-update is not 'true'.
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Setting up cmake (3.15.4-1+rpi1) ...
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Processing triggers for libc-bin (2.29-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-7+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.15.4-1+rpi1 cmake-data_3.15.4-1+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 googletest_1.10.0-2 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b11 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-7+rpi1 libc-dev-bin_2.29-7+rpi1 libc6_2.29-7+rpi1 libc6-dev_2.29-7+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl3-gnutls_7.67.0-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-1+rpi1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libgtest-dev_1.10.0-2 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.7.5-3 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.33.1-3 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 meson_0.52.1-1 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 ninja-build_1.10.0-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.15-2 python3_3.7.5-3 python3-minimal_3.7.5-3 python3.7_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pbcopper-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 29 08:25:53 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./pbcopper_1.3.0+dfsg-3.dsc
dpkg-source: info: extracting pbcopper in /<<BUILDDIR>>/pbcopper-1.3.0+dfsg
dpkg-source: info: unpacking pbcopper_1.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pbcopper_1.3.0+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_relying_on_clock.patch
dpkg-source: info: applying meson.patch
dpkg-source: info: applying simde
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-95549aa9-6dbc-4fd4-82db-304f623ab60e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package pbcopper
dpkg-buildpackage: info: source version 1.3.0+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --builddirectory=build
dh_auto_clean -O--builddirectory=build
dh_autoreconf_clean -O--builddirectory=build
dh_clean -O--builddirectory=build
debian/rules build-arch
dh build-arch --builddirectory=build
dh_update_autotools_config -a -O--builddirectory=build
dh_autoreconf -a -O--builddirectory=build
dh_auto_configure -a -O--builddirectory=build
cd build && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf
The Meson build system
Version: 0.52.1
Source dir: /<<BUILDDIR>>/pbcopper-1.3.0+dfsg
Build dir: /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/build
Build type: native build
Project name: pbcopper
Project version: 1.3.0
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security'
Appending LDFLAGS from environment: ['-Wl,-z,relro']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3'
Appending LDFLAGS from environment: ['-Wl,-z,relro']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
Appending CFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security'
Appending LDFLAGS from environment: ['-Wl,-z,relro']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
C compiler for the host machine: cc (gcc 9.2.1 "cc (Raspbian 9.2.1-25+rpi1) 9.2.1 20200123")
C linker for the host machine: GNU ld.bfd 2.33.90.20200122
Appending CXXFLAGS from environment: '-g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3'
Appending LDFLAGS from environment: ['-Wl,-z,relro']
Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2'
C++ compiler for the host machine: c++ (gcc 9.2.1 "c++ (Raspbian 9.2.1-25+rpi1) 9.2.1 20200123")
C++ linker for the host machine: GNU ld.bfd 2.33.90.20200122
Host machine cpu family: arm
Host machine cpu: armv8l
Compiler for C++ supports arguments -Wduplicated-cond: YES
Compiler for C++ supports arguments -Wduplicated-branches: YES
Compiler for C++ supports arguments -Wlogical-op: YES
Compiler for C++ supports arguments -Wrestrict: YES
Compiler for C++ supports arguments -Wuseless-cast: YES
Compiler for C++ supports arguments -Wdouble-promotion: YES
Compiler for C++ supports arguments -Wshadow: YES
Compiler for C++ supports arguments -Wformat=1: YES
Run-time dependency threads found: YES
Run-time dependency Boost found: YES 1.67
Configuring PbcopperVersion.cpp using configuration
Program tools/check-formatting found: YES (/<<BUILDDIR>>/pbcopper-1.3.0+dfsg/tools/check-formatting)
Configuring test_CLI.cpp using configuration
Found pkg-config: /usr/bin/pkg-config (0.29)
Run-time dependency GTest found: YES 1.10.0
Configuring PbcopperTestData.h using configuration
Build targets in project: 4
Option buildtype is: plain [default: release]
Found ninja-1.10.0 at /usr/bin/ninja
dh_auto_build -a -O--builddirectory=build
cd build && LC_ALL=C.UTF-8 ninja -j4 -v
[1/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' -c ../src/align/AlignConfig.cpp
[2/114] /usr/bin/meson --internal vcstagger ../src/utility/PbcopperGitHash.cpp.in src/utility/PbcopperGitHash.cpp 1.3.0 /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/src/utility @COPPER_GIT_SHA1@ '(.*)' /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/src/utility/git describe --always '--dirty=*'
[3/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' -c src/utility/PbcopperGitHash.cpp
[4/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' -c ../src/align/ChainSeedsConfig.cpp
[5/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' -c ../src/align/BandedChainAlignment.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/align/BandedChainAlignment.h:8,
from ../src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator<PacBio::Align::Seed>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/align/BandedChainAlignment.h:8,
from ../src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<PacBio::Align::Seed> PacBio::Align::Internal::BandedChainAlignerImpl::MergeSeeds(const std::vector<PacBio::Align::Seed>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[6/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' -c ../src/align/AffineAlignment.cpp
[7/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' -c ../src/align/FindSeeds.cpp
In file included from ../include/pbcopper/qgram/Index.h:77,
from ../src/align/FindSeeds.cpp:5:
../include/pbcopper/qgram/internal/Index-inl.h: In member function ‘PacBio::QGram::IndexHits PacBio::QGram::internal::IndexImpl::Hits(const PacBio::QGram::internal::Shape&, size_t) const’:
../include/pbcopper/qgram/internal/Index-inl.h:120:37: warning: narrowing conversion of ‘(long long unsigned int)iter’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing]
120 | return IndexHits{&suffixArray_, iter, end, queryPos};
| ^~~~
../include/pbcopper/qgram/internal/Index-inl.h:120:43: warning: narrowing conversion of ‘(long long unsigned int)end’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing]
120 | return IndexHits{&suffixArray_, iter, end, queryPos};
| ^~~
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/align/Seeds.h:10,
from ../include/pbcopper/align/FindSeeds.h:11,
from ../src/align/FindSeeds.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/align/Seeds.h:10,
from ../include/pbcopper/align/FindSeeds.h:11,
from ../src/align/FindSeeds.cpp:3:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void PacBio::QGram::internal::IndexImpl::Init()’:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from ../include/pbcopper/qgram/Index.h:77,
from ../src/align/FindSeeds.cpp:5:
../include/pbcopper/qgram/internal/Index-inl.h:106:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
106 | }
| ^
[8/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' -c ../src/align/LocalAlignment.cpp
[9/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' -c ../src/align/Seed.cpp
[10/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' -c ../src/align/LinearAlignment.cpp
[11/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' -c ../src/align/Seeds.cpp
[12/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' -c ../src/align/ChainSeeds.cpp
In file included from /usr/include/c++/9/vector:72,
from /usr/include/c++/9/queue:61,
from ../include/pbcopper/align/ChainSeeds.h:7,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator<PacBio::Align::Seed>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::Align::SDPHit}; _Tp = PacBio::Align::SDPHit; _Alloc = std::allocator<PacBio::Align::SDPHit>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::SDPHit>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function ‘void PacBio::Align::InitializeSeedsAndScores(const PacBio::Align::Seeds&, std::vector<PacBio::Align::SDPHit>*, std::vector<long int>*)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/align/ChainSeeds.h:6,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = PacBio::Align::SDPHit; _Val = PacBio::Align::SDPHit; _KeyOfValue = std::_Identity<PacBio::Align::SDPHit>; _Compare = std::less<PacBio::Align::SDPHit>; _Alloc = std::allocator<PacBio::Align::SDPHit>]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<PacBio::Align::SDPHit, PacBio::Align::SDPHit, std::_Identity<PacBio::Align::SDPHit>, std::less<PacBio::Align::SDPHit>, std::allocator<PacBio::Align::SDPHit> >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<PacBio::Align::SDPHit>’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/core/swap.hpp:25,
from /usr/include/boost/optional/optional.hpp:31,
from /usr/include/boost/optional.hpp:15,
from ../include/pbcopper/align/ChainSeeds.h:12,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const PacBio::Align::SDPHit&, const PacBio::Align::SDPHit&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::SDPHit&, const PacBio::Align::SDPHit&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/queue:62,
from ../include/pbcopper/align/ChainSeeds.h:7,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Distance = int; _Tp = PacBio::Align::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/core/swap.hpp:25,
from /usr/include/boost/optional/optional.hpp:31,
from /usr/include/boost/optional.hpp:15,
from ../include/pbcopper/align/ChainSeeds.h:12,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/queue:62,
from ../include/pbcopper/align/ChainSeeds.h:7,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Distance = int; _Tp = PacBio::Align::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::SDPHit&, const PacBio::Align::SDPHit&)>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/core/swap.hpp:25,
from /usr/include/boost/optional/optional.hpp:31,
from /usr/include/boost/optional.hpp:15,
from ../include/pbcopper/align/ChainSeeds.h:12,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::SDPHit&, const PacBio::Align::SDPHit&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void PacBio::Align::ChainSeedsImpl(std::priority_queue<PacBio::Align::ChainHit, std::vector<PacBio::Align::ChainHit>, PacBio::Align::ChainHitCompare>*, std::vector<boost::optional<unsigned int> >*, std::vector<PacBio::Align::SDPHit>*, std::vector<long int>&, size_t, const PacBio::Align::ChainSeedsConfig&)’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::SDPHit*, std::vector<PacBio::Align::SDPHit> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/include/c++/9/queue:61,
from ../include/pbcopper/align/ChainSeeds.h:7,
from ../src/align/ChainSeeds.cpp:3:
/usr/include/c++/9/bits/stl_vector.h: In function ‘std::vector<std::vector<PacBio::Align::Seed> > PacBio::Align::ChainSeeds(const PacBio::Align::Seeds&, const PacBio::Align::ChainSeedsConfig&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[13/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' -c ../src/align/SparseAlignment.cpp
[14/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' -c ../src/align/PairwiseAlignment.cpp
[15/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' -MF 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' -c ../src/align/cssw/ssw_cpp.cpp
[16/114] cc -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c11 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -MD -MQ 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -MF 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o.d' -o 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' -c ../src/align/cssw/ssw.c
[17/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' -c ../src/cli/CLI.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from ../src/cli/CLI.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from ../src/cli/CLI.cpp:3:
/usr/include/c++/9/bits/stl_map.h: In function ‘int PacBio::CLI::Run(const std::vector<std::__cxx11::basic_string<char> >&, const PacBio::CLI::Interface&, const ResultsHandler&)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[18/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' -c ../src/cli/Option.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../src/cli/Option.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../src/cli/Option.cpp:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector<std::__cxx11::basic_string<char> >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::string PacBio::CLI::Option::TypeId() const’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[19/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' -c ../src/cli/Parser.cpp
[20/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' -c ../src/cli/HelpPrinter.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/HelpPrinter.cpp:13:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/HelpPrinter.cpp:13:
/usr/include/c++/9/bits/stl_map.h: In function ‘PacBio::CLI::{anonymous}::makeHelpText(const PacBio::CLI::Interface&)::<lambda(const PacBio::CLI::Interface&, const string&, const std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&, size_t, std::ostringstream&)>’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘std::string PacBio::CLI::{anonymous}::makeHelpText(const PacBio::CLI::Interface&)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[21/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' -c ../src/cli/VersionPrinter.cpp
[22/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' -c ../src/cli/Interface.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/Interface.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/Interface.cpp:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::JSON::Json PacBio::CLI::Interface::OptionChoices(const string&) const’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[23/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' -c ../src/cli/Results.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../src/cli/Results.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../src/cli/Results.cpp:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results::Result& PacBio::CLI::Results::operator[](const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘const Result& PacBio::CLI::Results::operator[](const string&) const’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterObservedOption(const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In function ‘typename std::_MakeUniq<_Tp>::__single_object std::make_unique(_Args&& ...) [with _Tp = PacBio::CLI::Results::ResultsPrivate; _Args = {PacBio::CLI::Interface, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >}]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterOptionValue(const string&, const Json&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘PacBio::CLI::Results& PacBio::CLI::Results::RegisterOptionValueString(const string&, const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::string PacBio::CLI::Results::EffectiveCommandLine() const’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::Results::Results(PacBio::CLI::Interface, std::vector<std::__cxx11::basic_string<char> >)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[24/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' -c ../src/cli/toolcontract/JsonPrinter.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli/Interface.h:10,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/stl_map.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeDriverJson(const PacBio::CLI::Interface&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli/Interface.h:10,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeResourceTypesJson(const PacBio::CLI::ToolContract::Task&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/cli/Interface.h:10,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/stl_vector.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeInputTypesJson(const PacBio::CLI::Interface&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function ‘Json PacBio::CLI::ToolContract::{anonymous}::makeOutputTypesJson(const PacBio::CLI::Interface&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli/Interface.h:10,
from ../src/cli/toolcontract/JsonPrinter.cpp:8:
/usr/include/c++/9/bits/vector.tcc: In static member function ‘static void PacBio::CLI::ToolContract::JsonPrinter::Print(const PacBio::CLI::Interface&, std::ostream&, int)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[25/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' -c ../src/cli2/CLI.cpp
[26/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' -c ../src/cli/toolcontract/ResolvedToolContract.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../src/cli/toolcontract/ResolvedToolContract.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli/Results.h:11,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../src/cli/toolcontract/ResolvedToolContract.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../src/cli/toolcontract/ResolvedToolContract.cpp:3:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli/Results.h:11,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../src/cli/toolcontract/ResolvedToolContract.cpp:3:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../src/cli/toolcontract/ResolvedToolContract.cpp:3:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[27/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' -c ../src/cli2/HelpMetrics.cpp
[28/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' -c ../src/cli2/CommandLineParser.cpp
[29/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' -c ../src/cli2/Interface.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/Interface.h:12,
from ../src/cli2/Interface.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::CLI_v2::internal::OptionData}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator<PacBio::CLI_v2::internal::OptionData>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::CLI_v2::internal::OptionData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::CLI_v2::Interface& PacBio::CLI_v2::Interface::AddOption(const PacBio::CLI_v2::Option&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::internal::OptionData&}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator<PacBio::CLI_v2::internal::OptionData>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::CLI_v2::internal::OptionData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/cli2/Interface.h:12,
from ../src/cli2/Interface.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<PacBio::CLI_v2::internal::OptionData> PacBio::CLI_v2::Interface::Options() const’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[30/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' -c ../src/cli2/InterfaceHelpPrinter.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/Interface.h:12,
from ../include/pbcopper/cli2/internal/InterfaceHelpPrinter.h:14,
from ../src/cli2/InterfaceHelpPrinter.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::internal::OptionData&}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator<PacBio::CLI_v2::internal::OptionData>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::CLI_v2::internal::OptionData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/cli2/Interface.h:12,
from ../include/pbcopper/cli2/internal/InterfaceHelpPrinter.h:14,
from ../src/cli2/InterfaceHelpPrinter.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::string PacBio::CLI_v2::internal::InterfaceHelpPrinter::Options()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[31/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' -c ../src/cli2/MultiToolInterfaceHelpPrinter.cpp
[32/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' -c ../src/cli2/MultiToolInterface.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/MultiToolInterface.h:11,
from ../src/cli2/MultiToolInterface.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::CLI_v2::Tool&}; _Tp = PacBio::CLI_v2::Tool; _Alloc = std::allocator<PacBio::CLI_v2::Tool>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::CLI_v2::Tool>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::Tool*, std::vector<PacBio::CLI_v2::Tool> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::CLI_v2::MultiToolInterface& PacBio::CLI_v2::MultiToolInterface::AddTool(const PacBio::CLI_v2::Tool&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::Tool*, std::vector<PacBio::CLI_v2::Tool> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[33/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' -c ../src/cli2/Option.cpp
[34/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' -c ../src/cli2/OptionValue.cpp
[35/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' -c ../src/cli2/Result.cpp
[36/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' -c ../src/cli2/VersionPrinter.cpp
[37/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' -c ../src/data/Accuracy.cpp
[38/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' -c ../src/cli2/Results.cpp
[39/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' -c ../src/data/CigarOperation.cpp
[40/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' -c ../src/data/Cigar.cpp
[41/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' -c ../src/data/Frames.cpp
[42/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' -c ../src/data/Clipping.cpp
[43/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' -c ../src/cli2/PositionalArgumentTranslator.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/internal/PositionalArgumentData.h:13,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:12,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/internal/PositionalArgumentData.h:13,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:12,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:9,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/internal/PositionalArgumentData.h:13,
from ../include/pbcopper/cli2/internal/PositionalArgumentTranslator.h:12,
from ../src/cli2/PositionalArgumentTranslator.cpp:1:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[44/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' -MF 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' -c ../src/cli2/OptionTranslator.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:9,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::CLI_v2::internal::OptionData}; _Tp = PacBio::CLI_v2::internal::OptionData; _Alloc = std::allocator<PacBio::CLI_v2::internal::OptionData>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::CLI_v2::internal::OptionData>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::detail::value_t}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/Option.h:12,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:11,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/Option.h:12,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:11,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = nlohmann::basic_json<>; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:9,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘bool nlohmann::detail::parser<BasicJsonType>::sax_parse_internal(SAX*) [with SAX = nlohmann::detail::json_sax_dom_parser<nlohmann::basic_json<> >; BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/Option.h:12,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:11,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:9,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/boost/core/swap.hpp:25,
from /usr/include/boost/optional/optional.hpp:31,
from /usr/include/boost/optional.hpp:15,
from ../include/pbcopper/cli2/Option.h:10,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:11,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/stl_algo.h: In function ‘_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<const boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]’:
/usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’ changed in GCC 7.1
112 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:112:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void {anonymous}::Validate(const Option&, const OptionData&)’:
/usr/include/c++/9/bits/stl_algo.h:161:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’ changed in GCC 7.1
161 | return __find_if(__first, __last, __pred,
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
162 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/container_hash/extensions.hpp:22,
from /usr/include/boost/container_hash/hash.hpp:760,
from /usr/include/boost/type_index/stl_type_index.hpp:43,
from /usr/include/boost/type_index.hpp:29,
from /usr/include/boost/variant/variant.hpp:21,
from /usr/include/boost/variant.hpp:17,
from ../include/pbcopper/cli2/OptionValue.h:10,
from ../include/pbcopper/cli2/Option.h:12,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:11,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/stl_map.h: In member function ‘bool nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::key(nlohmann::detail::json_sax_dom_callback_parser<BasicJsonType>::string_t&) [with BasicJsonType = nlohmann::basic_json<>]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/cli2/internal/OptionTranslator.h:9,
from ../src/cli2/OptionTranslator.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In static member function ‘static PacBio::CLI_v2::internal::OptionData PacBio::CLI_v2::internal::OptionTranslator::Translate(const PacBio::CLI_v2::Option&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<signed char, short int, int, long long int, unsigned char, short unsigned int, unsigned int, long long unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In static member function ‘static std::vector<PacBio::CLI_v2::internal::OptionData> PacBio::CLI_v2::internal::OptionTranslator::Translate(const std::vector<PacBio::CLI_v2::Option>&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::CLI_v2::internal::OptionData*, std::vector<PacBio::CLI_v2::internal::OptionData> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[45/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' -c ../src/data/MovieName.cpp
[46/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' -c ../src/data/QualityValue.cpp
[47/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' -c ../src/data/MappedRead.cpp
[48/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' -c ../src/data/GenomicInterval.cpp
[49/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Read.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' -c ../src/data/Read.cpp
[50/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' -c ../src/data/QualityValues.cpp
[51/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' -c ../src/data/Interval.cpp
[52/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' -c ../src/data/ReadId.cpp
[53/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' -c ../src/data/RSMovieName.cpp
[54/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' -c ../src/logging/LogConfig.cpp
[55/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' -MF 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' -c ../src/data/SNR.cpp
[56/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' -c ../src/logging/LogLevel.cpp
[57/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' -c ../src/logging/LogMessage.cpp
[58/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -MF 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' -c ../src/logging/Logging.cpp
[59/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' -c ../src/utility/Deleters.cpp
[60/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' -c ../src/utility/Stopwatch.cpp
[61/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' -MF 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' -c ../src/utility/StringUtils.cpp
[62/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -MF 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -c src/utility/PbcopperVersion.cpp
[63/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' -c ../src/reports/TaskReport.cpp
[64/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' -c ../src/reports/Report.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/reports/Report.h:13,
from ../src/reports/Report.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >; _Alloc = std::allocator<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::Reports::Column& PacBio::Reports::Column::AddValue(PacBio::Reports::ReportValue)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >*, std::vector<boost::variant<boost::blank, int, unsigned int, double, bool, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::Reports::Attribute}; _Tp = PacBio::Reports::Attribute; _Alloc = std::allocator<PacBio::Reports::Attribute>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Reports::Attribute>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Reports::Attribute*, std::vector<PacBio::Reports::Attribute> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘PacBio::Reports::Report& PacBio::Reports::Report::AddAttribute(PacBio::Reports::Attribute)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Reports::Attribute*, std::vector<PacBio::Reports::Attribute> >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[65/114] c++ -Isrc/25a6634@@pbcopper@sha -Isrc -I../src -Iinclude -I../include -Isrc/utility -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -pthread -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' -MF 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o.d' -o 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' -c ../src/reports/ReportPrinter.cpp
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/json/internal/json.hpp:49,
from ../include/pbcopper/json/JSON.h:27,
from ../src/reports/ReportPrinter.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../src/reports/ReportPrinter.cpp:5:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../src/reports/ReportPrinter.cpp:5:
/usr/include/c++/9/bits/stl_map.h: In static member function ‘static void PacBio::Reports::internal::ReportPrinter::PrintSummary(std::ostream&, const PacBio::Reports::Report&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/json/internal/json.hpp:49,
from ../include/pbcopper/json/JSON.h:27,
from ../src/reports/ReportPrinter.cpp:5:
/usr/include/c++/9/bits/vector.tcc: In function ‘Json {anonymous}::ToJson(const PacBio::Reports::Table&, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In static member function ‘static void PacBio::Reports::internal::ReportPrinter::Print(std::ostream&, const PacBio::Reports::Report&, const string&)’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[66/114] c++ -Iexamples/cli_demo/c7429bd@@cli_demo@exe -Iexamples/cli_demo -I../examples/cli_demo -Iinclude -I../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -MD -MQ 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -MF 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o.d' -o 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -c ../examples/cli_demo/main.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from ../examples/cli_demo/main.cpp:2:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from ../examples/cli_demo/main.cpp:2:
/usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector<std::__cxx11::basic_string<char> >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[67/114] c++ -o src/libpbcopper.so.1.3.0 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperGitHash.cpp.o' 'src/25a6634@@pbcopper@sha/align_AffineAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_AlignConfig.cpp.o' 'src/25a6634@@pbcopper@sha/align_BandedChainAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_ChainSeeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_ChainSeedsConfig.cpp.o' 'src/25a6634@@pbcopper@sha/align_FindSeeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_LinearAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_LocalAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_PairwiseAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_Seed.cpp.o' 'src/25a6634@@pbcopper@sha/align_Seeds.cpp.o' 'src/25a6634@@pbcopper@sha/align_SparseAlignment.cpp.o' 'src/25a6634@@pbcopper@sha/align_cssw_ssw.c.o' 'src/25a6634@@pbcopper@sha/align_cssw_ssw_cpp.cpp.o' 'src/25a6634@@pbcopper@sha/cli_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli_HelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Parser.cpp.o' 'src/25a6634@@pbcopper@sha/cli_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_JsonPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli_toolcontract_ResolvedToolContract.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_CLI.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_CommandLineParser.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_HelpMetrics.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Interface.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_InterfaceHelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterface.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_MultiToolInterfaceHelpPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_OptionTranslator.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Option.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_OptionValue.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_PositionalArgumentTranslator.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Result.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_Results.cpp.o' 'src/25a6634@@pbcopper@sha/cli2_VersionPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/data_Accuracy.cpp.o' 'src/25a6634@@pbcopper@sha/data_Cigar.cpp.o' 'src/25a6634@@pbcopper@sha/data_CigarOperation.cpp.o' 'src/25a6634@@pbcopper@sha/data_Clipping.cpp.o' 'src/25a6634@@pbcopper@sha/data_Frames.cpp.o' 'src/25a6634@@pbcopper@sha/data_GenomicInterval.cpp.o' 'src/25a6634@@pbcopper@sha/data_Interval.cpp.o' 'src/25a6634@@pbcopper@sha/data_MappedRead.cpp.o' 'src/25a6634@@pbcopper@sha/data_MovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_QualityValue.cpp.o' 'src/25a6634@@pbcopper@sha/data_QualityValues.cpp.o' 'src/25a6634@@pbcopper@sha/data_Read.cpp.o' 'src/25a6634@@pbcopper@sha/data_ReadId.cpp.o' 'src/25a6634@@pbcopper@sha/data_RSMovieName.cpp.o' 'src/25a6634@@pbcopper@sha/data_SNR.cpp.o' 'src/25a6634@@pbcopper@sha/logging_Logging.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogConfig.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogLevel.cpp.o' 'src/25a6634@@pbcopper@sha/logging_LogMessage.cpp.o' 'src/25a6634@@pbcopper@sha/reports_Report.cpp.o' 'src/25a6634@@pbcopper@sha/reports_ReportPrinter.cpp.o' 'src/25a6634@@pbcopper@sha/reports_TaskReport.cpp.o' 'src/25a6634@@pbcopper@sha/utility_Deleters.cpp.o' 'src/25a6634@@pbcopper@sha/utility_Stopwatch.cpp.o' 'src/25a6634@@pbcopper@sha/utility_StringUtils.cpp.o' 'src/25a6634@@pbcopper@sha/meson-generated_.._utility_PbcopperVersion.cpp.o' -Wl,--as-needed -Wl,--no-undefined -shared -fPIC -Wl,--start-group -Wl,-soname,libpbcopper.so.1.3.0 -Wl,--end-group -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-z,relro -pthread
[68/114] /usr/bin/meson --internal symbolextractor src/libpbcopper.so.1.3.0 'src/25a6634@@pbcopper@sha/libpbcopper.so.1.3.0.symbols'
[69/114] c++ -o examples/cli_demo/cli_demo 'examples/cli_demo/c7429bd@@cli_demo@exe/main.cpp.o' -Wl,--as-needed -Wl,--no-undefined -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-z,relro -Wl,--start-group src/libpbcopper.so.1.3.0 -Wl,--end-group -pthread '-Wl,-rpath,$ORIGIN/../../src' -Wl,-rpath-link,/<<BUILDDIR>>/pbcopper-1.3.0+dfsg/build/src
[70/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' -c ../tests/src/align/test_BandedChainAlign.cpp
[71/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' -c ../tests/src/cli/test_VersionPrinter.cpp
[72/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' -c ../tests/src/align/test_Seeds.cpp
[73/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' -c ../tests/src/align/test_Alignment.cpp
[74/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' -c tests/test_CLI.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from tests/test_CLI.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/CLI.h:13,
from tests/test_CLI.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[75/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' -c ../tests/src/cli/test_HelpPrinter.cpp
In file included from /usr/include/c++/9/map:60,
from /usr/include/gtest/internal/gtest-internal.h:58,
from /usr/include/gtest/gtest.h:62,
from ../tests/src/cli/test_HelpPrinter.cpp:5:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/gtest/internal/gtest-internal.h:58,
from /usr/include/gtest/gtest.h:62,
from ../tests/src/cli/test_HelpPrinter.cpp:5:
/usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector<std::__cxx11::basic_string<char> >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[76/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' -c ../tests/src/cli/test_Interface.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../tests/src/cli/test_Interface.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../tests/src/cli/test_Interface.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[77/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' -c ../tests/src/cli/test_Option.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../tests/src/cli/test_Option.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../tests/src/cli/test_Option.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[78/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' -c ../tests/src/cli2/test_VersionPrinter.cpp
[79/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' -c ../tests/src/cli/test_Results.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../tests/src/cli/test_Results.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../tests/src/cli/test_Results.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In constructor ‘PacBio::CLI::internal::OptionPrivate::OptionPrivate(std::string, std::vector<std::__cxx11::basic_string<char> >, std::string, PacBio::JSON::Json, PacBio::JSON::Json, PacBio::CLI::OptionFlags)’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[80/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' -c ../tests/src/cli/test_ResolvedToolContract.cpp
In file included from /usr/include/c++/9/map:60,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../tests/src/cli/test_ResolvedToolContract.cpp:1:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from ../include/pbcopper/json/internal/json.hpp:64,
from ../include/pbcopper/json/JSON.h:27,
from ../include/pbcopper/cli/Option.h:14,
from ../include/pbcopper/cli/Interface.h:12,
from ../include/pbcopper/cli/Results.h:13,
from ../include/pbcopper/cli/toolcontract/ResolvedToolContract.h:10,
from ../tests/src/cli/test_ResolvedToolContract.cpp:1:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[81/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' -c ../tests/src/cli/test_ToolContractJsonPrinter.cpp
In file included from /usr/include/c++/9/map:60,
from /usr/include/gtest/internal/gtest-internal.h:58,
from /usr/include/gtest/gtest.h:62,
from ../tests/src/cli/test_ToolContractJsonPrinter.cpp:3:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /usr/include/gtest/internal/gtest-internal.h:58,
from /usr/include/gtest/gtest.h:62,
from ../tests/src/cli/test_ToolContractJsonPrinter.cpp:3:
/usr/include/c++/9/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[82/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' -c ../tests/src/cli2/test_CLI.cpp
[83/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' -c ../tests/src/cli2/test_CommandLineParser.cpp
[84/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' -c ../tests/src/cli2/test_InterfaceHelpPrinter.cpp
[85/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' -c ../tests/src/cli2/test_MultiToolInterfaceHelpPrinter.cpp
[86/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_PositionalArgumentTranslator.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_PositionalArgumentTranslator.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_PositionalArgumentTranslator.cpp.o' -c ../tests/src/cli2/test_PositionalArgumentTranslator.cpp
[87/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' -c ../tests/src/cli2/test_OptionValue.cpp
[88/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o' -c ../tests/src/data/test_Frames.cpp
[89/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionTranslator.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionTranslator.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionTranslator.cpp.o' -c ../tests/src/cli2/test_OptionTranslator.cpp
[90/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Cigar.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Cigar.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Cigar.cpp.o' -c ../tests/src/data/test_Cigar.cpp
[91/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' -c ../tests/src/cli2/test_Results.cpp
[92/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' -c ../tests/src/data/test_Accuracy.cpp
[93/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' -c ../tests/src/data/test_GenomicInterval.cpp
[94/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' -c ../tests/src/data/test_Interval.cpp
[95/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' -c ../tests/src/data/test_RSMovieName.cpp
[96/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' -c ../tests/src/data/test_MovieName.cpp
[97/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' -c ../tests/src/data/test_QualityValues.cpp
[98/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' -c ../tests/src/data/test_MappedRead.cpp
[99/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' -c ../tests/src/data/test_ReadName.cpp
[100/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' -c ../tests/src/parallel/test_FireAndForgetIndexed.cpp
[101/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' -c ../tests/src/json/test_JSON.cpp
[102/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' -c ../tests/src/data/test_RSReadName.cpp
[103/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_logging_test_Logging.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_logging_test_Logging.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_logging_test_Logging.cpp.o' -c ../tests/src/logging/test_Logging.cpp
[104/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' -c ../tests/src/data/test_Read.cpp
[105/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -c ../tests/src/utility/test_SystemInfo.cpp
[106/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' -c ../tests/src/parallel/test_FireAndForget.cpp
[107/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' -c ../tests/src/reports/test_Report.cpp
[108/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' -c ../tests/src/parallel/test_WorkQueue.cpp
[109/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' -c ../tests/src/utility/test_FileUtils.cpp
[110/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' -c ../tests/src/qgram/test_Index.cpp
In file included from ../include/pbcopper/qgram/Index.h:77,
from ../tests/src/qgram/test_Index.cpp:1:
../include/pbcopper/qgram/internal/Index-inl.h: In member function ‘PacBio::QGram::IndexHits PacBio::QGram::internal::IndexImpl::Hits(const PacBio::QGram::internal::Shape&, size_t) const’:
../include/pbcopper/qgram/internal/Index-inl.h:120:37: warning: narrowing conversion of ‘(long long unsigned int)iter’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing]
120 | return IndexHits{&suffixArray_, iter, end, queryPos};
| ^~~~
../include/pbcopper/qgram/internal/Index-inl.h:120:43: warning: narrowing conversion of ‘(long long unsigned int)end’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing]
120 | return IndexHits{&suffixArray_, iter, end, queryPos};
| ^~~
In file included from /usr/include/c++/9/vector:72,
from ../include/pbcopper/qgram/Index.h:11,
from ../tests/src/qgram/test_Index.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from ../include/pbcopper/qgram/Index.h:11,
from ../tests/src/qgram/test_Index.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void PacBio::QGram::internal::IndexImpl::Init()’:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from ../include/pbcopper/qgram/Index.h:77,
from ../tests/src/qgram/test_Index.cpp:1:
../include/pbcopper/qgram/internal/Index-inl.h:106:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
106 | }
| ^
[111/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' -c ../tests/src/utility/test_MinMax.cpp
[112/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' -c ../tests/src/utility/test_Stopwatch.cpp
[113/114] c++ -Itests/59830eb@@pbcopper_test@exe -Itests -I../tests -Iinclude -I../include -I../tests/include -I/usr/lib/arm-linux-gnueabihf/pkgconfig/../../include -fdiagnostics-color=always -DNDEBUG -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -Wl,--start-group -lpthread -Wl,--end-group -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op -Wrestrict -Wuseless-cast -Wdouble-promotion -Wshadow -Wformat=1 -MD -MQ 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' -MF 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o.d' -o 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' -c ../tests/src/utility/test_StringUtils.cpp
[114/114] c++ -o tests/pbcopper_test 'tests/59830eb@@pbcopper_test@exe/meson-generated_.._test_CLI.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_Alignment.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_BandedChainAlign.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_align_test_Seeds.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_HelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Interface.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Option.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ResolvedToolContract.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_Results.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_ToolContractJsonPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli_test_VersionPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CLI.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_CommandLineParser.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_InterfaceHelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_MultiToolInterfaceHelpPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionTranslator.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_OptionValue.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_PositionalArgumentTranslator.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_Results.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_cli2_test_VersionPrinter.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Accuracy.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Cigar.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Frames.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_GenomicInterval.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Interval.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_MappedRead.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_MovieName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_QualityValues.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_Read.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_ReadName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSMovieName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_data_test_RSReadName.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_json_test_JSON.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_logging_test_Logging.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_WorkQueue.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForget.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_parallel_test_FireAndForgetIndexed.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_qgram_test_Index.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_reports_test_Report.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_FileUtils.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_MinMax.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_Stopwatch.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_StringUtils.cpp.o' 'tests/59830eb@@pbcopper_test@exe/src_utility_test_SystemInfo.cpp.o' -Wl,--as-needed -Wl,--no-undefined -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/pbcopper-1.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-z,relro -Wl,--start-group src/libpbcopper.so.1.3.0 /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/libgtest_main.a -lpthread /usr/lib/gcc/arm-linux-gnueabihf/9/../../../arm-linux-gnueabihf/libgtest.a -Wl,--end-group -pthread '-Wl,-rpath,$ORIGIN/../src' -Wl,-rpath-link,/<<BUILDDIR>>/pbcopper-1.3.0+dfsg/build/src
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/pbcopper-1.3.0+dfsg'
cd build && meson test --no-rebuild --print-errorlogs
1/2 pbcopper formatting check OK 0.12 s
2/2 pbcopper gtest unittests OK 1.02 s
Ok: 2
Expected Fail: 0
Fail: 0
Unexpected Pass: 0
Skipped: 0
Timeout: 0
Full log written to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/build/meson-logs/testlog.txt
make[1]: Leaving directory '/<<BUILDDIR>>/pbcopper-1.3.0+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --builddirectory=build
dh_testroot -a -O--builddirectory=build
dh_prep -a -O--builddirectory=build
dh_auto_install -a -O--builddirectory=build
cd build && DESTDIR=/<<BUILDDIR>>/pbcopper-1.3.0\+dfsg/debian/tmp LC_ALL=C.UTF-8 ninja install
[1/7] Generating PbcopperGitHash.cpp with a custom command.
[1/2] Installing files.
Installing src/libpbcopper.so.1.3.0 to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/PbcopperConfig.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/AffineAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/AlignConfig.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/BandedChainAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/ChainSeeds.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/ChainSeedsConfig.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/FindSeeds.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/LinearAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/LocalAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/PairwiseAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/Seed.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/Seeds.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/SparseAlignment.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/internal/BCAlignBlocks.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/align/internal/BCAlignImpl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/align/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/CLI.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/HelpPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Interface.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Option.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/OptionFlags.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Parser.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/PositionalArg.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/Results.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/SingleDashMode.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/VersionPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/internal/Option-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Config.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Driver.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/InputFileType.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/JsonPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/OutputFileType.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/ResolvedToolContract.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/ResourceType.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/Task.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/TaskType.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/Driver-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/InputFileType-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/OutputFileType-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli/toolcontract/internal/Task-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli/toolcontract/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/CLI.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Interface.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/MultiToolInterface.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Option.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/OptionValue.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/OptionGroup.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/PositionalArgument.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Result.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Results.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/ResultsHandler.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/Tool.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/BuiltinOptions.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/CommandLineParser.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/HelpMetrics.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceData.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/InterfaceHelpPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceData.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/MultiToolInterfaceHelpPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/OptionData.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/OptionTranslator.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentData.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/PositionalArgumentTranslator.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/cli2/internal/VersionPrinter.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/cli2/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Accuracy.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/CCSTag.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Cigar.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/CigarOperation.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Clipping.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Frames.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/GenomicInterval.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Interval.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/LocalContextFlags.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/MappedRead.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/MovieName.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Orientation.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Position.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/QualityValue.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/QualityValues.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Read.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/ReadId.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/ReadName.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/RSMovieName.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/RSReadName.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/SNR.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Strand.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/Zmw.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ClippingImpl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/MovieName-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/ReadNameBase.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/data/internal/RSMovieName-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/data/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/json/JSON.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/json
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/json/internal/json.hpp to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/json/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/Logging.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogConfig.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogField.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogLevel.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/logging/LogMessage.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/logging
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/FireAndForget.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/FireAndForgetIndexed.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/parallel/WorkQueue.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/parallel
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/reports/Report.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/reports
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/Index.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/IndexHit.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/IndexHits.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/internal/Hashing-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/qgram/internal/Index-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/qgram/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Deleters.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/FileUtils.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/MinMax.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/MoveAppend.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/PbcopperVersion.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SafeSubtract.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SequenceUtils.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Stopwatch.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/StringUtils.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/SystemInfo.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/Unused.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/FileUtils-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/Stopwatch-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/include/pbcopper/utility/internal/SystemInfo-inl.h to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/include/pbcopper/utility/internal
Installing /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/build/meson-private/pbcopper.pc to /<<BUILDDIR>>/pbcopper-1.3.0+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig
dh_install -a -O--builddirectory=build
dh_installdocs -a -O--builddirectory=build
dh_installchangelogs -a -O--builddirectory=build
dh_installinit -a -O--builddirectory=build
dh_installsystemduser -a -O--builddirectory=build
dh_perl -a -O--builddirectory=build
dh_link -a -O--builddirectory=build
dh_strip_nondeterminism -a -O--builddirectory=build
dh_compress -a -O--builddirectory=build
dh_fixperms -a -O--builddirectory=build
dh_missing -a -O--builddirectory=build
dh_dwz -a -O--builddirectory=build
dh_strip -a -O--builddirectory=build
dh_makeshlibs -a -O--builddirectory=build
dh_shlibdeps -a -O--builddirectory=build
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libpbcopper1.3.0/usr/lib/arm-linux-gnueabihf/libpbcopper.so.1.3.0 found in none of the libraries
dh_installdeb -a -O--builddirectory=build
dh_gencontrol -a -O--builddirectory=build
dpkg-gencontrol: warning: Depends field of package libpbcopper-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--builddirectory=build
dh_builddeb -a -O--builddirectory=build
dpkg-deb: building package 'libpbcopper1.3.0' in '../libpbcopper1.3.0_1.3.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libpbcopper1.3.0-dbgsym' in '../libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libpbcopper-dev' in '../libpbcopper-dev_1.3.0+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../pbcopper_1.3.0+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-04T11:10:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pbcopper_1.3.0+dfsg-3_armhf.changes:
------------------------------------
Format: 1.8
Date: Wed, 29 Jan 2020 09:16:01 +0100
Source: pbcopper
Binary: libpbcopper-dev libpbcopper1.3.0 libpbcopper1.3.0-dbgsym
Architecture: armhf
Version: 1.3.0+dfsg-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libpbcopper-dev - data structures, algorithms, and utilities for C++ applications -
libpbcopper1.3.0 - data structures, algorithms, and utilities for C++ applications
Changes:
pbcopper (1.3.0+dfsg-3) unstable; urgency=medium
.
* Remove unused license paragraph
* Increase timeout for s390 and make sure test will pass in any case
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Files:
8354eff29bf904e4707e4ff4b1d41f22 149036 libdevel optional libpbcopper-dev_1.3.0+dfsg-3_armhf.deb
b3d22f588b0f8ab92e954be3e2d3a1b5 8149160 debug optional libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3_armhf.deb
ab9e6c6a392213cf6d59737776eed16f 277464 libs optional libpbcopper1.3.0_1.3.0+dfsg-3_armhf.deb
6ac1bf7e4d4aabe281bfa9d087965a29 6664 libs optional pbcopper_1.3.0+dfsg-3_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libpbcopper-dev_1.3.0+dfsg-3_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 149036 bytes: control archive=4024 bytes.
627 bytes, 16 lines control
9703 bytes, 124 lines md5sums
Package: libpbcopper-dev
Source: pbcopper
Version: 1.3.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1062
Depends: libpbcopper1.3.0 (= 1.3.0+dfsg-3)
Section: libdevel
Priority: optional
Homepage: https://github.com/PacificBiosciences/pbcopper
Description: data structures, algorithms, and utilities for C++ applications -- header files
pbcopper provides general tools for C++ applications. It is developed
for use by applications of the Pacific Biosciences SMRT Analysis
suite.
.
This package contains the header files and static library
drwxr-xr-x root/root 0 2020-01-29 08:16 ./
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/
-rw-r--r-- root/root 1101 2019-08-23 15:47 ./usr/include/pbcopper/PbcopperConfig.h
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/align/
-rw-r--r-- root/root 1361 2019-08-23 15:47 ./usr/include/pbcopper/align/AffineAlignment.h
-rw-r--r-- root/root 815 2019-08-23 15:47 ./usr/include/pbcopper/align/AlignConfig.h
-rw-r--r-- root/root 3066 2019-08-23 15:47 ./usr/include/pbcopper/align/BandedChainAlignment.h
-rw-r--r-- root/root 9920 2019-08-23 15:47 ./usr/include/pbcopper/align/ChainSeeds.h
-rw-r--r-- root/root 1097 2019-08-23 15:47 ./usr/include/pbcopper/align/ChainSeedsConfig.h
-rw-r--r-- root/root 6927 2019-08-23 15:47 ./usr/include/pbcopper/align/FindSeeds.h
-rw-r--r-- root/root 727 2019-08-23 15:47 ./usr/include/pbcopper/align/LinearAlignment.h
-rw-r--r-- root/root 2339 2019-08-23 15:47 ./usr/include/pbcopper/align/LocalAlignment.h
-rw-r--r-- root/root 2397 2019-08-23 15:47 ./usr/include/pbcopper/align/PairwiseAlignment.h
-rw-r--r-- root/root 4348 2019-08-23 15:47 ./usr/include/pbcopper/align/Seed.h
-rw-r--r-- root/root 1960 2019-08-23 15:47 ./usr/include/pbcopper/align/Seeds.h
-rw-r--r-- root/root 4230 2019-08-23 15:47 ./usr/include/pbcopper/align/SparseAlignment.h
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/align/internal/
-rw-r--r-- root/root 3456 2019-08-23 15:47 ./usr/include/pbcopper/align/internal/BCAlignBlocks.h
-rw-r--r-- root/root 1843 2019-08-23 15:47 ./usr/include/pbcopper/align/internal/BCAlignImpl.h
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/cli/
-rw-r--r-- root/root 2260 2019-08-23 15:47 ./usr/include/pbcopper/cli/CLI.h
-rw-r--r-- root/root 514 2019-08-23 15:47 ./usr/include/pbcopper/cli/HelpPrinter.h
-rw-r--r-- root/root 6602 2019-08-23 15:47 ./usr/include/pbcopper/cli/Interface.h
-rw-r--r-- root/root 7826 2019-08-23 15:47 ./usr/include/pbcopper/cli/Option.h
-rw-r--r-- root/root 795 2019-08-23 15:47 ./usr/include/pbcopper/cli/OptionFlags.h
-rw-r--r-- root/root 1075 2019-08-23 15:47 ./usr/include/pbcopper/cli/Parser.h
-rw-r--r-- root/root 427 2019-08-23 15:47 ./usr/include/pbcopper/cli/PositionalArg.h
-rw-r--r-- root/root 4990 2019-08-23 15:47 ./usr/include/pbcopper/cli/Results.h
-rw-r--r-- root/root 480 2019-08-23 15:47 ./usr/include/pbcopper/cli/SingleDashMode.h
-rw-r--r-- root/root 485 2019-08-23 15:47 ./usr/include/pbcopper/cli/VersionPrinter.h
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drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/json/
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drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/include/pbcopper/utility/internal/
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drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/libpbcopper.so -> libpbcopper.so.1.3.0
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 278 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/pkgconfig/pbcopper.pc
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drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/doc/libpbcopper-dev/
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libpbcopper1.3.0-dbgsym_1.3.0+dfsg-3_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 8149160 bytes: control archive=548 bytes.
409 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libpbcopper1.3.0-dbgsym
Source: pbcopper
Version: 1.3.0+dfsg-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8198
Depends: libpbcopper1.3.0 (= 1.3.0+dfsg-3)
Section: debug
Priority: optional
Description: debug symbols for libpbcopper1.3.0
Build-Ids: ef0a727f3aef6a5ad8da9742b721adae9ef10083
drwxr-xr-x root/root 0 2020-01-29 08:16 ./
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 8384388 2020-01-29 08:16 ./usr/lib/debug/.build-id/ef/0a727f3aef6a5ad8da9742b721adae9ef10083.debug
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-01-29 08:16 ./usr/share/doc/libpbcopper1.3.0-dbgsym -> libpbcopper1.3.0
libpbcopper1.3.0_1.3.0+dfsg-3_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 277464 bytes: control archive=940 bytes.
612 bytes, 16 lines control
396 bytes, 5 lines md5sums
51 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libpbcopper1.3.0
Source: pbcopper
Version: 1.3.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 889
Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.5), libstdc++6 (>= 9)
Section: libs
Priority: optional
Homepage: https://github.com/PacificBiosciences/pbcopper
Description: data structures, algorithms, and utilities for C++ applications
pbcopper provides general tools for C++ applications. It is developed
for use by applications of the Pacific Biosciences SMRT Analysis
suite.
.
This package contains the dynamic library
drwxr-xr-x root/root 0 2020-01-29 08:16 ./
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 889804 2020-01-29 08:16 ./usr/lib/arm-linux-gnueabihf/libpbcopper.so.1.3.0
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-01-29 08:16 ./usr/share/doc/libpbcopper1.3.0/
-rw-r--r-- root/root 3004 2019-08-23 15:47 ./usr/share/doc/libpbcopper1.3.0/README.md
-rw-r--r-- root/root 942 2020-01-29 08:16 ./usr/share/doc/libpbcopper1.3.0/changelog.Debian.gz
-rw-r--r-- root/root 1527 2019-08-23 15:47 ./usr/share/doc/libpbcopper1.3.0/changelog.gz
-rw-r--r-- root/root 3206 2020-01-29 08:16 ./usr/share/doc/libpbcopper1.3.0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 322772
Build-Time: 308
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 382
Job: pbcopper_1.3.0+dfsg-3
Machine Architecture: armhf
Package: pbcopper
Package-Time: 706
Source-Version: 1.3.0+dfsg-3
Space: 322772
Status: successful
Version: 1.3.0+dfsg-3
--------------------------------------------------------------------------------
Finished at 2020-02-04T11:10:00Z
Build needed 00:11:46, 322772k disk space