parsnp →
1.5.3+dfsg-2 →
armhf → 2020-10-04 17:25:39
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| parsnp 1.5.3+dfsg-2 (armhf) Sun, 04 Oct 2020 17:15:15 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.5.3+dfsg-2
Source Version: 1.5.3+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-af3ee882-998c-4d25-b23e-0fc6593581b4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.4 MB in 24s (1022 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/parsnp.git
Please use:
git clone https://salsa.debian.org/med-team/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 136 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main parsnp 1.5.3+dfsg-2 (dsc) [2075 B]
Get:2 http://172.17.0.1/private bullseye-staging/main parsnp 1.5.3+dfsg-2 (tar) [126 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main parsnp 1.5.3+dfsg-2 (diff) [7584 B]
Fetched 136 kB in 0s (1967 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-m5E6AG/parsnp-1.5.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-m5E6AG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kRnlh7/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kRnlh7/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kRnlh7/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2585 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12514 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, libmuscle-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, libmuscle-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-kRnlh7/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Sources [532 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ Packages [609 B]
Fetched 2474 B in 1s (3196 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cython3 debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libicu67 libmagic-mgc libmagic1 libmuscle-dev libmuscle1 libpipeline1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2
libssl1.1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
mime-support po-debconf python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.8 python3.8-dev python3.8-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
python3.8-venv python3.8-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cython3 debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libicu67 libmagic-mgc libmagic1 libmuscle-dev libmuscle1 libpipeline1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8
libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2
libssl1.1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
mime-support po-debconf python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.8 python3.8-dev python3.8-minimal
sbuild-build-depends-parsnp-dummy zlib1g-dev
0 upgraded, 60 newly installed, 0 to remove and 37 not upgraded.
Need to get 30.9 MB/32.2 MB of archives.
After this operation, 122 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kRnlh7/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.6-1 [752 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.6-1 [1552 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.6-1 [1654 kB]
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Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-1 [1318 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
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Get:31 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.0-2 [1173 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6 [578 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.5-1 [78.4 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.5-1 [145 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200925 [98.3 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libmuscle1 armhf 3.7+4565-6 [203 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libmuscle-dev armhf 3.7+4565-6 [242 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.6-1 [1343 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.6-1 [2887 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.8.2-3 [1068 B]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.8.2-3 [1056 B]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.6-1 [519 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.8.2-3 [1064 B]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 49.3.1-2 [188 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 49.3.1-2 [512 kB]
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Setting up libpipeline1:armhf (1.5.3-1) ...
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.0-2) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2.1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libpython3.8-stdlib:armhf (3.8.6-1) ...
Setting up python3.8 (3.8.6-1) ...
Setting up libelf1:armhf (0.181-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libpython3.8:armhf (3.8.6-1) ...
Setting up cython3 (0.29.21-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up python3-lib2to3 (3.8.5-1) ...
Setting up python3-pkg-resources (49.3.1-2) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.5-1) ...
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Setting up python3-setuptools (49.3.1-2) ...
Setting up python3-all (3.8.2-3) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.8-dev:armhf (3.8.6-1) ...
Setting up python3.8-dev (3.8.6-1) ...
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Setting up po-debconf (1.0.21) ...
Setting up libpython3-all-dev:armhf (3.8.2-3) ...
Setting up python3-dev (3.8.2-3) ...
Setting up python3-all-dev (3.8.2-3) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-5+rpi1 gcc-10_10.2.0-5+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2+rpi1 binutils-arm-linux-gnueabihf_2.35-2+rpi1 binutils-common_2.35-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.30-3 cpp_4:10.1.0-1+rpi1 cpp-10_10.2.0-5+rpi1 cython3_0.29.21-1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1+rpi1 g++-10_10.2.0-5+rpi1 gcc_4:10.1.0-1+rpi1 gcc-10_10.2.0-5+rpi1 gcc-10-base_10.2.0-5+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan6_10.2.0-5+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.35-2+rpi1 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-6+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-5+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2+rpi1 libctf0_2.35-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.181-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-5+rpi1 libgcc-s1_10.2.0-5+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-5+rpi1 libgpg-error0_1.38-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.4.0-2 libldap-2.4-2_2.4.51+dfsg-1 libldap-common_2.4.51+dfsg-1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libmuscle-dev_3.7+4565-6 libmuscle1_3.7+4565-6 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.2-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-5+rpi1 libstdc++6_10.2.0-5+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.2-1+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_246.2-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-dev_3.8.2-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3-pkg-resources_49.3.1-2 python3-setuptools_49.3.1-2 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.mwpSSpET/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 1 12:07:50 2020 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.5.3+dfsg-2.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.5.3+dfsg
dpkg-source: info: unpacking parsnp_1.5.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.5.3+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
dpkg-source: info: applying non-versioned-libs.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-af3ee882-998c-4d25-b23e-0fc6593581b4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.5.3+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3
dh_clean
debian/rules binary-arch
dh binary-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.5.3\" -DPACKAGE_STRING=\"parsnp\ 1.5.3\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.5.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp_core-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
parsnp.cpp: In member function 'void Aligner::writeOutput(std::string, std::vector<float>&)':
parsnp.cpp:925:24: warning: '%d' directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null
| ^~
parsnp.cpp:925:23: note: directive argument in the range [-2147483647, 2147483647]
925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null
| ^~~~
parsnp.cpp:925:20: note: 'sprintf' output between 2 and 12 bytes into a destination of size 9
925 | sprintf(b,"%d",(int)z+1);// C-style string formed without null
| ~~~~~~~^~~~~~~~~~~~~~~~~
g++ -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp_core parsnp_core-MuscleInterface.o parsnp_core-parsnp.o parsnp_core-LCB.o parsnp_core-LCR.o parsnp_core-TMum.o parsnp_core-Converter.o parsnp_core-iniFile.o -fopenmp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<BUILDDIR>>/parsnp-1.5.3\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
Making install in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[3]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/debian/parsnp../bin'
/usr/bin/install -c parsnp_core '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/debian/parsnp../bin'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python3 -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.5.3+dfsg'
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/parsnp/usr/lib/parsnp/parsnp_core contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/parsnp/usr/lib/parsnp/parsnp_core was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.5.3+dfsg-2_armhf.deb'.
dpkg-deb: building package 'parsnp' in '../parsnp_1.5.3+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../parsnp_1.5.3+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-10-04T17:25:28Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.5.3+dfsg-2_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 01 Oct 2020 17:23:41 +0530
Source: parsnp
Binary: parsnp parsnp-dbgsym
Architecture: armhf
Version: 1.5.3+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
parsnp - rapid core genome multi-alignment
Closes: 971522
Changes:
parsnp (1.5.3+dfsg-2) unstable; urgency=medium
.
* Team Upload.
* Use raxmlHPC instead of raxmlHPC-PTHREADS (Closes: #971522)
Checksums-Sha1:
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c94de190bd482a662e390421935adf06d6fb2f33 5445 parsnp_1.5.3+dfsg-2_armhf.buildinfo
50a0c714e472dbf7f2472248d879551c4b4e207f 165200 parsnp_1.5.3+dfsg-2_armhf.deb
Checksums-Sha256:
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ea3991fe2ba6809d5fc55c3d190890b5ece048b3fd279bbc43a18a20604e6c19 5445 parsnp_1.5.3+dfsg-2_armhf.buildinfo
a5869e52e1bf3fbb5547f308b2671fe599c0db2ef94351d2ebdc25f578c1dce2 165200 parsnp_1.5.3+dfsg-2_armhf.deb
Files:
c4f5f114fd55a9945c7603a0f11b4ce7 1279936 debug optional parsnp-dbgsym_1.5.3+dfsg-2_armhf.deb
6acbd13f00aaaedcd7216d11c5a6bd58 5445 science optional parsnp_1.5.3+dfsg-2_armhf.buildinfo
2b03020637018d6f7acc96d2bbeb6d6c 165200 science optional parsnp_1.5.3+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.5.3+dfsg-2_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 1279936 bytes: control archive=536 bytes.
377 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp
Version: 1.5.3+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1309
Depends: parsnp (= 1.5.3+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for parsnp
Build-Ids: f56dee64aab4c16102d95b1b85444522909cb891
drwxr-xr-x root/root 0 2020-10-01 11:53 ./
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/debug/.build-id/f5/
-rw-r--r-- root/root 1329404 2020-10-01 11:53 ./usr/lib/debug/.build-id/f5/6dee64aab4c16102d95b1b85444522909cb891.debug
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-10-01 11:53 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.5.3+dfsg-2_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 165200 bytes: control archive=2408 bytes.
1036 bytes, 18 lines control
5572 bytes, 59 lines md5sums
Package: parsnp
Version: 1.5.3+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1820
Depends: libc6 (>= 2.27), libgcc-s1 (>= 3.5), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python3:any, python3-numpy, fasttree, harvest-tools, mummer, phipack, python3, raxml
Recommends: python3-dendropy
Section: science
Priority: optional
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2020-10-01 11:53 ./
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/bin/
-rwxr-xr-x root/root 55347 2020-10-01 11:53 ./usr/bin/parsnp
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/lib/parsnp/
-rwxr-xr-x root/root 267796 2020-10-01 11:53 ./usr/lib/parsnp/parsnp_core
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 265 2020-10-01 11:35 ./usr/share/doc/parsnp/NEWS.Debian.gz
-rw-r--r-- root/root 265 2020-10-01 11:35 ./usr/share/doc/parsnp/NEWS.gz
-rw-r--r-- root/root 2263 2020-08-01 01:27 ./usr/share/doc/parsnp/README.md
-rw-r--r-- root/root 278 2020-10-01 11:35 ./usr/share/doc/parsnp/README.test
-rw-r--r-- root/root 1224 2020-10-01 11:53 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2096 2020-10-01 11:35 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2020-10-01 11:53 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 30621 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna
-rw-r--r-- root/root 30616 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna
-rw-r--r-- root/root 30623 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna
-rw-r--r-- root/root 30661 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna
-rw-r--r-- root/root 30651 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna
-rw-r--r-- root/root 30654 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna
-rw-r--r-- root/root 30662 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna
-rw-r--r-- root/root 30608 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna
-rw-r--r-- root/root 30599 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna
-rw-r--r-- root/root 30658 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna
-rw-r--r-- root/root 30613 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna
-rw-r--r-- root/root 30625 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna
-rw-r--r-- root/root 30598 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna
-rw-r--r-- root/root 30626 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna
-rw-r--r-- root/root 30630 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna
-rw-r--r-- root/root 30633 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna
-rw-r--r-- root/root 30614 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna
-rw-r--r-- root/root 30436 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna
-rw-r--r-- root/root 30655 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna
-rw-r--r-- root/root 30605 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna
-rw-r--r-- root/root 30605 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna
-rw-r--r-- root/root 30685 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna
-rw-r--r-- root/root 30430 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna
-rw-r--r-- root/root 30545 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna
-rw-r--r-- root/root 30645 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna
-rw-r--r-- root/root 30645 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna
-rw-r--r-- root/root 30640 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna
-rw-r--r-- root/root 30642 2020-08-01 01:27 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 25276
Build-Time: 238
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 326
Job: parsnp_1.5.3+dfsg-2
Machine Architecture: armhf
Package: parsnp
Package-Time: 613
Source-Version: 1.5.3+dfsg-2
Space: 25276
Status: successful
Version: 1.5.3+dfsg-2
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Finished at 2020-10-04T17:25:28Z
Build needed 00:10:13, 25276k disc space