parsnp →
1.2+dfsg-6 →
armhf → 2019-09-18 05:36:28
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| parsnp 1.2+dfsg-6 (armhf) Wed, 18 Sep 2019 05:31:06 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.2+dfsg-6
Source Version: 1.2+dfsg-6
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-403c8239-e30e-4f21-9c55-4ce91f4da95b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.5 MB in 10s (2348 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/parsnp.git
Please use:
git clone https://salsa.debian.org/med-team/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 109 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main parsnp 1.2+dfsg-6 (dsc) [2034 B]
Get:2 http://172.17.0.1/private bullseye-staging/main parsnp 1.2+dfsg-6 (tar) [93.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main parsnp 1.2+dfsg-6 (diff) [13.6 kB]
Fetched 109 kB in 0s (856 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-MwmKUb/parsnp-1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-MwmKUb' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-LcP1im/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-LcP1im/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-LcP1im/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (6520 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 104 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, libmuscle-dev
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-setuptools, cython3, libmuscle-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-LcP1im/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Sources [531 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ Packages [609 B]
Fetched 2473 B in 0s (7218 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libmpdec2 libmuscle-dev libmuscle1 libncurses6 libncursesw6
libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
libreadline8 libsigsegv2 libssl1.1 libsub-override-perl libtinfo5 libtinfo6
libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3
python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.7
python3.7-dev python3.7-minimal sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-setuptools-doc python3.7-venv python3.7-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libmpdec2 libmuscle-dev libmuscle1 libncurses6 libpipeline1
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libreadline8
libsigsegv2 libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0
libxml2 m4 man-db mime-support po-debconf python3 python3-all
python3-all-dev python3-dev python3-distutils python3-lib2to3
python3-minimal python3-pkg-resources python3-setuptools python3.7
python3.7-dev python3.7-minimal sbuild-build-depends-parsnp-dummy
sensible-utils
The following packages will be upgraded:
libncursesw6 libtinfo6
2 upgraded, 66 newly installed, 0 to remove and 102 not upgraded.
Need to get 76.4 MB of archives.
After this operation, 182 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LcP1im/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-4 [584 kB]
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Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.4-4 [1462 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20190803-1 [104 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libreadline8 armhf 8.0-3 [138 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-4 [1672 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-4 [340 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
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Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.2-2 [1299 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
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Get:41 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.6.1 [172 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
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Get:48 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.6.1 [993 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-2 [128 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libmuscle1 armhf 3.7+4565-6 [203 kB]
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Get:59 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.4-4 [1255 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.4-4 [47.2 MB]
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Get:64 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.4-4 [514 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.3-1 [1264 B]
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Get:67 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.2.0-1 [154 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.2.0-1 [307 kB]
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Setting up libpipeline1:armhf (1.5.1-2) ...
Setting up mime-support (3.63) ...
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Setting up libarchive-zip-perl (1.65-1) ...
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No schema files found: doing nothing.
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Setting up libexpat1-dev:armhf (2.2.7-2) ...
Setting up libncurses6:armhf (6.1+20190803-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libmuscle-dev (3.7+4565-6) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up sensible-utils (0.0.12) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up libfile-stripnondeterminism-perl (1.6.0-1) ...
Setting up libpython3.7-stdlib:armhf (3.7.4-4) ...
Setting up libpython3.7:armhf (3.7.4-4) ...
Setting up libtool (2.4.6-9) ...
Setting up libpython3.7-dev:armhf (3.7.4-4) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libpython3-stdlib:armhf (3.7.3-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3.7 (3.7.4-4) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libpython3-dev:armhf (3.7.3-1) ...
Setting up python3 (3.7.3-1) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.4-4) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3-all-dev:armhf (3.7.3-1) ...
Setting up cython3 (0.29.2-2) ...
Setting up python3-lib2to3 (3.7.4-3) ...
Setting up python3-pkg-resources (41.2.0-1) ...
Setting up python3-distutils (3.7.4-3) ...
Setting up dh-python (4.20190722) ...
Setting up python3-setuptools (41.2.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-all (3.7.3-1) ...
Setting up python3-dev (3.7.3-1) ...
Setting up python3-all-dev (3.7.3-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.6.1) ...
Setting up dh-strip-nondeterminism (1.6.0-1) ...
Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 cython3_0.29.2-2 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.6.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.37-5 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.65-1 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblkid1_2.33.1-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libmuscle-dev_3.7+4565-6 libmuscle1_3.7+4565-6 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpython3-all-dev_3.7.3-1 libpython3-dev_3.7.3-1 libpython3-stdlib_3.7.3-1 libpython3.7_3.7.4-4 libpython3.7-dev_3.7.4-4 libpython3.7-minimal_3.7.4-4 libpython3.7-stdlib_3.7.4-4 libreadline7_7.0-5 libreadline8_8.0-3 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_241-5+rpi1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b2 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mime-support_3.63 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 po-debconf_1.0.21 python3_3.7.3-1 python3-all_3.7.3-1 python3-all-dev_3.7.3-1 python3-dev_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3-pkg-resources_41.2.0-1 python3-setuptools_41.2.0-1 python3.7_3.7.4-4 python3.7-dev_3.7.4-4 python3.7-minimal_3.7.4-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 13 11:35:02 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-6.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.2+dfsg
dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.2+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_libmuscle_path.patch
dpkg-source: info: applying fix_setup.py
dpkg-source: info: applying fix_install_path.patch
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
dpkg-source: info: applying non-versioned-libs.patch
dpkg-source: info: applying 2to3_new.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-403c8239-e30e-4f21-9c55-4ce91f4da95b
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.2+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/parsnp-1.2+dfsg/.pybuild/cpython3_3.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_clean
debian/rules build-arch
dh build-arch --with python3
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_install
make -j4 install DESTDIR=/<<BUILDDIR>>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
/usr/bin/install -c parsnp '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
# The actual user interface is the Python3 script so move the binary to /usr/lib
mkdir -p debian/parsnp/usr/lib/parsnp
mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python3 -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/parsnp/usr/lib/parsnp/parsnp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/parsnp/usr/lib/parsnp/parsnp was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-6_armhf.deb'.
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.2+dfsg-6_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../parsnp_1.2+dfsg-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-09-18T05:36:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.2+dfsg-6_armhf.changes:
--------------------------------
Format: 1.8
Date: Fri, 13 Sep 2019 13:07:43 +0200
Source: parsnp
Binary: parsnp parsnp-dbgsym
Architecture: armhf
Version: 1.2+dfsg-6
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
parsnp - rapid core genome multi-alignment
Closes: 937242
Changes:
parsnp (1.2+dfsg-6) unstable; urgency=medium
.
* Use 2to3 to port to Python3
Closes: #937242
* debhelper-compat 12
* Standards-Version: 4.4.0
* Secure URI in copyright format
* Use secure URI in Homepage field.
* buildsystem=pybuild
* Inform users about Python3 migration in NEWS.Debian
Checksums-Sha1:
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7f04db5712247201a6e14f537143813f20279829 5378 parsnp_1.2+dfsg-6_armhf.buildinfo
a9bc1ed9e06331dcbd9308c5ae0232d7f2f5aed0 159508 parsnp_1.2+dfsg-6_armhf.deb
Checksums-Sha256:
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f0fdfe2c3618a930ca93ee75445e1895f786c0e3e96f4adf5a26595cd6734b94 5378 parsnp_1.2+dfsg-6_armhf.buildinfo
a6bbbb7e674094d86e04b0d85d6836bcb8bc51461958c44dfd2146e5a5ebb5f6 159508 parsnp_1.2+dfsg-6_armhf.deb
Files:
dff48c4f9b101843ee4a66f9448add02 1209756 debug optional parsnp-dbgsym_1.2+dfsg-6_armhf.deb
99aeb73433c55f8e2be38ea421d70f8e 5378 science optional parsnp_1.2+dfsg-6_armhf.buildinfo
fc15d576c4780e8a2d524a6527bbd195 159508 science optional parsnp_1.2+dfsg-6_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.2+dfsg-6_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 1209756 bytes: control archive=536 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp
Version: 1.2+dfsg-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1232
Depends: parsnp (= 1.2+dfsg-6)
Section: debug
Priority: optional
Description: debug symbols for parsnp
Build-Ids: b7059160b42cc9eb7f729660bb017602ad5ebe5c
drwxr-xr-x root/root 0 2019-09-13 11:07 ./
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/debug/.build-id/b7/
-rw-r--r-- root/root 1250636 2019-09-13 11:07 ./usr/lib/debug/.build-id/b7/059160b42cc9eb7f729660bb017602ad5ebe5c.debug
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-09-13 11:07 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.2+dfsg-6_armhf.deb
---------------------------
new Debian package, version 2.0.
size 159508 bytes: control archive=2784 bytes.
1005 bytes, 18 lines control
5708 bytes, 59 lines md5sums
272 bytes, 12 lines * postinst #!/bin/sh
387 bytes, 12 lines * prerm #!/bin/sh
Package: parsnp
Version: 1.2+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1893
Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python3:any, python3-numpy, fasttree, mummer, phipack
Recommends: python3-dendropy
Section: science
Priority: optional
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2019-09-13 11:07 ./
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/bin/
lrwxrwxrwx root/root 0 2019-09-13 11:07 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/lib/parsnp/
-rwxr-xr-x root/root 255508 2019-09-13 11:07 ./usr/lib/parsnp/parsnp
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 265 2019-09-13 11:07 ./usr/share/doc/parsnp/NEWS.Debian.gz
-rw-r--r-- root/root 771 2019-09-13 11:07 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2096 2019-09-13 11:07 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2019-09-13 11:07 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 30621 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna
-rw-r--r-- root/root 30616 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna
-rw-r--r-- root/root 30623 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna
-rw-r--r-- root/root 30661 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna
-rw-r--r-- root/root 30651 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna
-rw-r--r-- root/root 30654 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna
-rw-r--r-- root/root 30662 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna
-rw-r--r-- root/root 30608 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna
-rw-r--r-- root/root 30599 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 20228
Build-Time: 71
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 230
Job: parsnp_1.2+dfsg-6
Machine Architecture: armhf
Package: parsnp
Package-Time: 319
Source-Version: 1.2+dfsg-6
Space: 20228
Status: successful
Version: 1.2+dfsg-6
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Finished at 2019-09-18T05:36:25Z
Build needed 00:05:19, 20228k disk space