parsnp →
1.2+dfsg-5 →
armhf → 2018-08-08 04:58:29
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| parsnp 1.2+dfsg-5 (armhf) Wed, 08 Aug 2018 04:43:32 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.2+dfsg-5
Source Version: 1.2+dfsg-5
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-f793d272-fc1a-41f5-81e5-94882dcb1b82' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.6 MB in 26s (900 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/parsnp.git
Please use:
git clone https://salsa.debian.org/med-team/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 103 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-5 (dsc) [2022 B]
Get:2 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-5 (tar) [93.0 kB]
Get:3 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-5 (diff) [8244 B]
Fetched 103 kB in 0s (1750 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-JzzEWU/parsnp-1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-JzzEWU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4EVNrM/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4EVNrM/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4EVNrM/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (3097 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 92 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools, cython, libmuscle-dev
Filtered Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools, cython, libmuscle-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-4EVNrM/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Sources [526 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ Packages [607 B]
Fetched 2466 B in 1s (3774 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu-le-hb0
libicu60 libmagic-mgc libmagic1 libmpdec2 libmuscle-dev libmuscle1
libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-pkg-resources python-setuptools python2 python2-dev
python2-minimal python2.7 python2.7-dev python2.7-minimal python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python-doc python-tk python-setuptools-doc
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu-le-hb0
libicu60 libmagic-mgc libmagic1 libmpdec2 libmuscle-dev libmuscle1
libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-pkg-resources python-setuptools python2 python2-dev
python2-minimal python2.7 python2.7-dev python2.7-minimal python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal sbuild-build-depends-parsnp-dummy
0 upgraded, 74 newly installed, 0 to remove and 92 not upgraded.
Need to get 60.1 MB/60.8 MB of archives.
After this operation, 161 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EVNrM/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-3 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-3 [1082 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-3 [1843 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-3 [298 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.28.4-1 [1947 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.4-1+rpi1 [836 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180723 [94.2 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libmuscle1 armhf 3.7+4565-4 [202 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libmuscle-dev armhf 3.7+4565-4 [242 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-3 [886 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-3 [27.6 MB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:64 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:65 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-3 [289 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:67 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:68 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:69 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 39.2.0-1 [171 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 39.2.0-1 [375 kB]
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Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 cython_0.28.4-1 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180723 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.8.4-1+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libmuscle-dev_3.7+4565-4 libmuscle1_3.7+4565-4 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-3 libpython2.7-dev_2.7.15-3 libpython2.7-minimal_2.7.15-3 libpython2.7-stdlib_2.7.15-3 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_39.2.0-1 python-setuptools_39.2.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-3 python2.7-dev_2.7.15-3 python2.7-minimal_2.7.15-3 python3_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Aug 3 13:25:48 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-5.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.2+dfsg
dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.2+dfsg-5.debian.tar.xz
dpkg-source: info: applying fix_libmuscle_path.patch
dpkg-source: info: applying fix_setup.py
dpkg-source: info: applying fix_install_path.patch
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
dpkg-source: info: applying non-versioned-libs.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-f793d272-fc1a-41f5-81e5-94882dcb1b82
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.2+dfsg-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build parsnp-1.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_auto_clean
dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_clean: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py clean -a
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_install
make -j4 install DESTDIR=/<<BUILDDIR>>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
/usr/bin/install -c parsnp '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
# The actual user interface is the Python script so move the binary to /usr/lib
mkdir -p debian/parsnp/usr/lib/parsnp
mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python2 -a
I: dh_python2 tools:113: replacing shebang in debian/parsnp/usr/share/parsnp/Parsnp.py
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/parsnp/usr/lib/parsnp/parsnp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/parsnp/usr/lib/parsnp/parsnp was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.2+dfsg-5_armhf.deb'.
dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../parsnp_1.2+dfsg-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build parsnp-1.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-08-08T04:58:24Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.2+dfsg-5_armhf.changes:
--------------------------------
Format: 1.8
Date: Wed, 18 Jul 2018 13:17:32 +0200
Source: parsnp
Binary: parsnp
Architecture: armhf
Version: 1.2+dfsg-5
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
parsnp - rapid core genome multi-alignment
Changes:
parsnp (1.2+dfsg-5) unstable; urgency=medium
.
* Build-Depends: dh-python
* libmuscle-3.7-dev is now libmuscle-dev
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Files:
65ad12f60f7e4ac07316817c4533c2a3 824312 debug optional parsnp-dbgsym_1.2+dfsg-5_armhf.deb
af34b2e33254e8c172ed5ddd019664e2 5835 science optional parsnp_1.2+dfsg-5_armhf.buildinfo
d375c20105b27d756af7c7f9ba7aae82 504228 science optional parsnp_1.2+dfsg-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.2+dfsg-5_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 824312 bytes: control archive=536 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp
Version: 1.2+dfsg-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 851
Depends: parsnp (= 1.2+dfsg-5)
Section: debug
Priority: optional
Description: debug symbols for parsnp
Build-Ids: 1e9d5efcd6dc8df9270cf213b5df52a238e17198
drwxr-xr-x root/root 0 2018-07-18 11:17 ./
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/debug/.build-id/1e/
-rw-r--r-- root/root 861052 2018-07-18 11:17 ./usr/lib/debug/.build-id/1e/9d5efcd6dc8df9270cf213b5df52a238e17198.debug
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.2+dfsg-5_armhf.deb
---------------------------
new Debian package, version 2.0.
size 504228 bytes: control archive=2652 bytes.
1000 bytes, 18 lines control
5790 bytes, 58 lines md5sums
173 bytes, 9 lines * postinst #!/bin/sh
251 bytes, 14 lines * prerm #!/bin/sh
Package: parsnp
Version: 1.2+dfsg-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 852
Depends: libc6 (>= 2.27), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 5.2), python:any, python-numpy, fasttree, mummer, phipack
Recommends: python-dendropy
Section: science
Priority: optional
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2018-07-18 11:17 ./
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/bin/
lrwxrwxrwx root/root 0 2018-07-18 11:17 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/lib/parsnp/
-rwxr-xr-x root/root 259604 2018-07-18 11:17 ./usr/lib/parsnp/parsnp
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 633 2018-07-18 11:17 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2095 2018-07-18 11:17 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 9837 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna.gz
-rw-r--r-- root/root 9841 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna.gz
-rw-r--r-- root/root 9886 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna.gz
-rw-r--r-- root/root 9830 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna.gz
-rw-r--r-- root/root 9844 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna.gz
-rw-r--r-- root/root 9850 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna.gz
-rw-r--r-- root/root 9848 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna.gz
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna.gz
-rw-r--r-- root/root 9789 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna.gz
-rw-r--r-- root/root 9893 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna.gz
-rw-r--r-- root/root 9858 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna.gz
-rw-r--r-- root/root 9915 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna.gz
-rw-r--r-- root/root 9803 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna.gz
-rw-r--r-- root/root 9756 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7149.fna.gz
-rw-r--r-- root/root 9597 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7569.fna.gz
-rw-r--r-- root/root 9667 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7770.fna.gz
-rw-r--r-- root/root 9813 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna.gz
-rw-r--r-- root/root 9866 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna.gz
-rw-r--r-- root/root 9874 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna.gz
-rw-r--r-- root/root 9877 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna.gz
-rw-r--r-- root/root 9795 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna.gz
-rw-r--r-- root/root 9879 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna.gz
-rw-r--r-- root/root 9892 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna.gz
-rw-r--r-- root/root 9851 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna.gz
-rw-r--r-- root/root 9856 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna.gz
-rw-r--r-- root/root 9865 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna.gz
-rw-r--r-- root/root 9836 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna.gz
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-rw-r--r-- root/root 9869 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna.gz
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/doc/parsnp/examples/mers_virus/ref/
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna.gz
-rw-r--r-- root/root 21102 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk.gz
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/man/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/man/man1/
-rw-r--r-- root/root 1478 2018-07-18 11:17 ./usr/share/man/man1/parsnp.1.gz
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/parsnp/
-rwxr-xr-x root/root 48857 2018-07-18 11:17 ./usr/share/parsnp/Parsnp.py
-rw-r--r-- root/root 395 2015-03-24 06:34 ./usr/share/parsnp/template.ini
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/python/
drwxr-xr-x root/root 0 2018-07-18 11:17 ./usr/share/python/runtime.d/
-rwxr-xr-x root/root 127 2018-07-18 11:17 ./usr/share/python/runtime.d/parsnp.rtupdate
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13732
Build-Time: 208
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 634
Job: parsnp_1.2+dfsg-5
Machine Architecture: armhf
Package: parsnp
Package-Time: 892
Source-Version: 1.2+dfsg-5
Space: 13732
Status: successful
Version: 1.2+dfsg-5
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Finished at 2018-08-08T04:58:24Z
Build needed 00:14:52, 13732k disc space