parsnp →
1.2+dfsg-3+b2 →
armhf → 2018-02-07 00:55:45
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| parsnp 1.2+dfsg-3+b2 (armhf) Wed, 07 Feb 2018 00:37:12 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.2+dfsg-3+b2
Source Version: 1.2+dfsg-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-7619416a-a353-4544-8c50-b142ac69c973' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.3 MB]
Fetched 22.9 MB in 28s (822 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/parsnp.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 103 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (dsc) [2011 B]
Get:2 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (tar) [93.0 kB]
Get:3 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (diff) [8080 B]
Fetched 103 kB in 0s (445 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-ySXBuF/parsnp-1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-ySXBuF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-d3Sboo/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-d3Sboo/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-d3Sboo/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2835 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 52 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (19.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15339 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-d3Sboo/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Sources [535 B]
Get:5 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ Packages [611 B]
Fetched 2479 B in 1s (3315 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism dpkg dpkg-dev file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libdpkg-perl libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1 libpython-all-dev
libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libtimedate-perl
libtool libxml2 m4 man-db mime-support po-debconf python python-all
python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make dwz debsig-verify debian-keyring gettext-doc
libasprintf-dev libgettextpo-dev groff git bzr libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser apparmor
libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc
binfmt-support
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx-cur libfile-fcntllock-perl
liblocale-gettext-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
sbuild-build-depends-parsnp-dummy
The following packages will be upgraded:
dpkg dpkg-dev libdpkg-perl
3 upgraded, 53 newly installed, 0 to remove and 49 not upgraded.
Need to get 58.7 MB/59.2 MB of archives.
After this operation, 132 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-d3Sboo/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf dpkg armhf 1.19.0.5 [2068 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-4 [393 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-4 [1075 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-4 [41.0 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-4 [1841 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-4 [293 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-4 [20.4 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-4 [155 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.26.1-0.4 [1747 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf dpkg-dev all 1.19.0.5 [1619 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libdpkg-perl all 1.19.0.5 [1315 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.5-3 [123 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libmuscle-3.7-1 armhf 3.7+4565-2 [205 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmuscle-3.7-dev armhf 3.7+4565-2 [269 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-4 [884 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-4 [27.6 MB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.14-4 [20.5 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.14-4 [1044 B]
Get:46 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.14-4 [1020 B]
Get:47 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-4 [285 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-4 [1208 B]
Get:49 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.14-4 [1044 B]
Get:50 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 38.4.0-1 [171 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 38.4.0-1 [311 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.5-3) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.54.3-2) ...
No schema files found: doing nothing.
Setting up libdpkg-perl (1.19.0.5) ...
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up dpkg-dev (1.19.0.5) ...
Processing triggers for libc-bin (2.26-2+rpi1) ...
Setting up autotools-dev (20171216.1) ...
Setting up libmuscle-3.7-1 (3.7+4565-2) ...
Setting up libexpat1-dev:armhf (2.2.5-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.14-4) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libmuscle-3.7-dev (3.7+4565-2) ...
Setting up gettext (0.19.8.1-4) ...
Setting up python2.7 (2.7.14-4) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up libpython-stdlib:armhf (2.7.14-4) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libpython2.7:armhf (2.7.14-4) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.14-4) ...
Setting up python2.7-dev (2.7.14-4) ...
Setting up python (2.7.14-4) ...
Setting up libtool (2.4.6-2) ...
Setting up libpython-dev:armhf (2.7.14-4) ...
Setting up po-debconf (1.0.20) ...
Setting up python-dev (2.7.14-4) ...
Setting up libpython-all-dev:armhf (2.7.14-4) ...
Setting up python-pkg-resources (38.4.0-1) ...
Setting up cython (0.26.1-0.4) ...
Setting up python-all (2.7.14-4) ...
Setting up python-setuptools (38.4.0-1) ...
Setting up python-all-dev (2.7.14-4) ...
Setting up dh-autoreconf (16) ...
Setting up debhelper (11.1.4) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.26-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-13+rpi1 dpkg-dev_1.19.0.5 g++-7_7.2.0-19 gcc-7_7.2.0-19 libc6-dev_2.26-2+rpi1 libstdc++-7-dev_7.2.0-19 libstdc++6_7.2.0-19 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha6 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-13+rpi1 binutils-arm-linux-gnueabihf_2.29.1-13+rpi1 binutils-common_2.29.1-13+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-19 cython_0.26.1-0.4 dash_0.5.8-2.5 debconf_1.5.65 debhelper_11.1.4 debianutils_4.8.4 dh-autoreconf_16 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.43.8-2 e2fsprogs_1.43.8-2 e2fsprogs-l10n_1.43.8-2 fakeroot_1.22-2 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1d1 g++-7_7.2.0-19 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-19 gcc-7-base_7.2.0-19 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.4-1 gnupg-agent_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.1-4 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libasan4_7.2.0-19 libassuan0_2.5.1-1 libatomic1_7.2.0-19 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.29.1-13+rpi1 libblkid1_2.30.2-0.1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-2+rpi1 libc-dev-bin_2.26-2+rpi1 libc6_2.26-2+rpi1 libc6-dev_2.26-2+rpi1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-19 libcilkrts5_7.2.0-19 libcomerr2_1.43.8-2 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.237 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-19 libgcc1_1:7.2.0-19 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-19 libgpg-error0_1.27-5 libhogweed4_3.4-1 libicu57_57.1-8 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libklibc_2.0.4-11+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmuscle-3.7-1_3.7+4565-2 libmuscle-3.7-dev_3.7+4565-2 libncurses5_6.0+20171125-1 libncursesw5_6.0+20171125-1 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-8 libperl5.24_5.24.1-7 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.14-4 libpython-dev_2.7.14-4 libpython-stdlib_2.7.14-4 libpython2.7_2.7.14-4 libpython2.7-dev_2.7.14-4 libpython2.7-minimal_2.7.14-4 libpython2.7-stdlib_2.7.14-4 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.21.0-1 libss2_1.43.8-2 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-19 libstdc++6_7.2.0-19 libsystemd0_236-2 libtasn1-6_4.12-3 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20171125-1 libtool_2.4.6-2 libubsan0_7.2.0-19 libudev1_236-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1 libxml2_2.9.4+dfsg1-6.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mime-support_3.60 mount_2.30.2-0.1 multiarch-support_2.26-2+rpi1 nano_2.9.1-1 ncurses-base_6.0+20171125-1 ncurses-bin_6.0+20171125-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-4 python-all_2.7.14-4 python-all-dev_2.7.14-4 python-dev_2.7.14-4 python-minimal_2.7.14-4 python-pkg-resources_38.4.0-1 python-setuptools_38.4.0-1 python2.7_2.7.14-4 python2.7-dev_2.7.14-4 python2.7-minimal_2.7.14-4 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017c-1 udev_236-2 util-linux_2.30.2-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 23 19:12:10 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-3.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.2+dfsg
dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.2+dfsg-3.debian.tar.xz
dpkg-source: info: applying fix_libmuscle_path.patch
dpkg-source: info: applying fix_setup.py
dpkg-source: info: applying fix_install_path.patch
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.2+dfsg-3+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-7619416a-a353-4544-8c50-b142ac69c973
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.2+dfsg-3+b2
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build parsnp-1.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --with autoreconf
dh_auto_clean
python setup.py clean -a
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_clean
debian/rules build-arch
dh build-arch --with python2 --with autoreconf
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE-3.7
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --with autoreconf
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_install
make -j4 install DESTDIR=/<<BUILDDIR>>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
/usr/bin/install -c parsnp '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
# The actual user interface is the Python script so move the binary to /usr/lib
mkdir -p debian/parsnp/usr/lib/parsnp
mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/parsnp/usr/lib/parsnp/parsnp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/parsnp/usr/lib/parsnp/parsnp was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-3+b2_armhf.deb'.
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.2+dfsg-3+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../parsnp_1.2+dfsg-3+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build parsnp-1.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-07T00:55:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.2+dfsg-3+b2_armhf.changes:
-----------------------------------
Format: 1.8
Date: Wed, 23 Nov 2016 20:08:46 +0100
Source: parsnp (1.2+dfsg-3)
Binary: parsnp
Binary-Only: yes
Architecture: armhf
Version: 1.2+dfsg-3+b2
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
parsnp - rapid core genome multi-alignment
Changes:
parsnp (1.2+dfsg-3+b2) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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b8847c5b01dfa17e45f577e082c3d2731842cdbb 5483 parsnp_1.2+dfsg-3+b2_armhf.buildinfo
eb637781b8dcf044ba6dfdc427c8fccec68942f4 503592 parsnp_1.2+dfsg-3+b2_armhf.deb
Checksums-Sha256:
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dfadb59dd462938d4010341bb29093f89f324380c1c03278cdf1c03307cc4e1b 5483 parsnp_1.2+dfsg-3+b2_armhf.buildinfo
7e997c69cc90f979eb860846fee4080bbfbb91ddfd65d44592d6266fdc1a924c 503592 parsnp_1.2+dfsg-3+b2_armhf.deb
Files:
0435e688a6714387c6087776e24dd177 805848 debug optional parsnp-dbgsym_1.2+dfsg-3+b2_armhf.deb
32ced1f66afeb87efa7f8ea3f06c9f01 5483 science optional parsnp_1.2+dfsg-3+b2_armhf.buildinfo
3fdcfa10c9ce8ab93c22918f38a45c2b 503592 science optional parsnp_1.2+dfsg-3+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.2+dfsg-3+b2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 805848 bytes: control archive=544 bytes.
391 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp (1.2+dfsg-3)
Version: 1.2+dfsg-3+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 832
Depends: parsnp (= 1.2+dfsg-3+b2)
Section: debug
Priority: optional
Description: debug symbols for parsnp
Build-Ids: 1b009480ea146396dd60d19118ebe0a5c4a97686
drwxr-xr-x root/root 0 2016-11-23 19:08 ./
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/.build-id/1b/
-rw-r--r-- root/root 840776 2016-11-23 19:08 ./usr/lib/debug/.build-id/1b/009480ea146396dd60d19118ebe0a5c4a97686.debug
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.2+dfsg-3+b2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 503592 bytes: control archive=2692 bytes.
1030 bytes, 19 lines control
5871 bytes, 59 lines md5sums
181 bytes, 9 lines * postinst #!/bin/sh
251 bytes, 14 lines * prerm #!/bin/sh
Package: parsnp
Source: parsnp (1.2+dfsg-3)
Version: 1.2+dfsg-3+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 849
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmuscle-3.7-1, libstdc++6 (>= 5.2), python:any (>= 2.7), python-numpy, fasttree, mummer, phipack
Recommends: python-dendropy
Section: science
Priority: optional
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2016-11-23 19:08 ./
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/bin/
lrwxrwxrwx root/root 0 2016-11-23 19:08 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/parsnp/
-rwxr-xr-x root/root 255508 2016-11-23 19:08 ./usr/lib/parsnp/parsnp
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 223 2016-11-23 19:08 ./usr/share/doc/parsnp/changelog.Debian.armhf.gz
-rw-r--r-- root/root 479 2016-11-23 19:08 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2095 2016-11-23 19:08 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 9837 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna.gz
-rw-r--r-- root/root 9841 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna.gz
-rw-r--r-- root/root 9886 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna.gz
-rw-r--r-- root/root 9830 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna.gz
-rw-r--r-- root/root 9844 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna.gz
-rw-r--r-- root/root 9850 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna.gz
-rw-r--r-- root/root 9848 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna.gz
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna.gz
-rw-r--r-- root/root 9789 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna.gz
-rw-r--r-- root/root 9893 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna.gz
-rw-r--r-- root/root 9858 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna.gz
-rw-r--r-- root/root 9915 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna.gz
-rw-r--r-- root/root 9803 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna.gz
-rw-r--r-- root/root 9756 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7149.fna.gz
-rw-r--r-- root/root 9597 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7569.fna.gz
-rw-r--r-- root/root 9667 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7770.fna.gz
-rw-r--r-- root/root 9813 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna.gz
-rw-r--r-- root/root 9866 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna.gz
-rw-r--r-- root/root 9874 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna.gz
-rw-r--r-- root/root 9877 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna.gz
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| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13504
Build-Time: 196
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 852
Job: parsnp_1.2+dfsg-3
Machine Architecture: armhf
Package: parsnp
Package-Time: 1105
Source-Version: 1.2+dfsg-3
Space: 13504
Status: successful
Version: 1.2+dfsg-3+b2
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Finished at 2018-02-07T00:55:37Z
Build needed 00:18:25, 13504k disc space