parsnp →
1.2+dfsg-3+b1 →
armhf → 2017-10-28 20:04:28
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| parsnp 1.2+dfsg-3+b1 (armhf) Sat, 28 Oct 2017 20:00:22 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.2+dfsg-3+b1
Source Version: 1.2+dfsg-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-3d40a7e2-a218-4e60-a2d8-6f802de7a058' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.4 MB in 8s (2502 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/parsnp.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 103 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (dsc) [2011 B]
Get:2 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (tar) [93.0 kB]
Get:3 http://172.17.0.1/private buster-staging/main parsnp 1.2+dfsg-3 (diff) [8080 B]
Fetched 103 kB in 0s (862 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-HrjqN4/parsnp-1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-HrjqN4' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JJaSLu/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JJaSLu/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JJaSLu/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (7251 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 73 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-JJaSLu/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Sources [535 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ Packages [612 B]
Fetched 2480 B in 0s (8385 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less
www-browser libmail-box-perl python-doc python-tk python-setuptools-doc
python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
sbuild-build-depends-parsnp-dummy
0 upgraded, 53 newly installed, 0 to remove and 73 not upgraded.
Need to get 54.3 MB of archives.
After this operation, 132 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JJaSLu/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [816 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-2 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-2 [1091 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-1 [40.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-2 [1854 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-2 [292 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-1 [20.1 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-1 [155 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.26.1-0.3+rpi1 [1748 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.039-1 [18.2 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.039-1 [11.6 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.9.2 [979 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-1 [120 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmuscle-3.7-1 armhf 3.7+4565-2 [205 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libmuscle-3.7-dev armhf 3.7+4565-2 [269 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-2 [904 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-2 [27.6 MB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.14-1 [20.1 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.14-1 [958 B]
Get:48 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.14-1 [942 B]
Get:49 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-2 [295 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-1 [1130 B]
Get:51 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.14-1 [964 B]
Get:52 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.2.7-2 [302 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 54.3 MB in 12s (4440 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../00-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../01-libbsd0_0.8.6-2_armhf.deb ...
Unpacking libbsd0:armhf (0.8.6-2) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_9.0.14_armhf.deb ...
Unpacking bsdmainutils (9.0.14) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.4.2-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.2-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../05-libpython2.7-minimal_2.7.14-2_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.14-2) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../06-python2.7-minimal_2.7.14-2_armhf.deb ...
Unpacking python2.7-minimal (2.7.14-2) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../07-python-minimal_2.7.14-1_armhf.deb ...
Unpacking python-minimal (2.7.14-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../08-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../09-libexpat1_2.2.3-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.3-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../10-libpython2.7-stdlib_2.7.14-2_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.14-2) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../11-python2.7_2.7.14-2_armhf.deb ...
Unpacking python2.7 (2.7.14-2) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../12-libpython-stdlib_2.7.14-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.14-1) ...
Setting up libpython2.7-minimal:armhf (2.7.14-2) ...
Setting up python2.7-minimal (2.7.14-2) ...
Setting up python-minimal (2.7.14-1) ...
Selecting previously unselected package python.
(Reading database ... 16431 files and directories currently installed.)
Preparing to unpack .../00-python_2.7.14-1_armhf.deb ...
Unpacking python (2.7.14-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.32-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.32-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../02-libmagic1_1%3a5.32-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.32-1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.32-1_armhf.deb ...
Unpacking file (1:5.32-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.19.8.1-4_armhf.deb ...
Unpacking gettext-base (0.19.8.1-4) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../05-libicu57_57.1-8_armhf.deb ...
Unpacking libicu57:armhf (57.1-8) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../06-libxml2_2.9.4+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-5) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../07-libsigsegv2_2.11-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.11-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../08-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../09-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../10-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../11-automake_1%3a1.15.1-3_all.deb ...
Unpacking automake (1:1.15.1-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../12-autopoint_0.19.8.1-4_all.deb ...
Unpacking autopoint (0.19.8.1-4) ...
Selecting previously unselected package cython.
Preparing to unpack .../13-cython_0.26.1-0.3+rpi1_armhf.deb ...
Unpacking cython (0.26.1-0.3+rpi1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../14-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../15-dh-autoreconf_14_all.deb ...
Unpacking dh-autoreconf (14) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../16-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../17-libfile-stripnondeterminism-perl_0.039-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.039-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../18-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_0.039-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.039-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../20-libglib2.0-0_2.54.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.54.1-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../21-libcroco3_0.6.12-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../22-gettext_0.19.8.1-4_armhf.deb ...
Unpacking gettext (0.19.8.1-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../23-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../24-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../25-debhelper_10.9.2_all.deb ...
Unpacking debhelper (10.9.2) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../26-libexpat1-dev_2.2.3-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.3-1) ...
Selecting previously unselected package libmuscle-3.7-1.
Preparing to unpack .../27-libmuscle-3.7-1_3.7+4565-2_armhf.deb ...
Unpacking libmuscle-3.7-1 (3.7+4565-2) ...
Selecting previously unselected package libmuscle-3.7-dev.
Preparing to unpack .../28-libmuscle-3.7-dev_3.7+4565-2_armhf.deb ...
Unpacking libmuscle-3.7-dev (3.7+4565-2) ...
Selecting previously unselected package libpython2.7:armhf.
Preparing to unpack .../29-libpython2.7_2.7.14-2_armhf.deb ...
Unpacking libpython2.7:armhf (2.7.14-2) ...
Selecting previously unselected package libpython2.7-dev:armhf.
Preparing to unpack .../30-libpython2.7-dev_2.7.14-2_armhf.deb ...
Unpacking libpython2.7-dev:armhf (2.7.14-2) ...
Selecting previously unselected package libpython-dev:armhf.
Preparing to unpack .../31-libpython-dev_2.7.14-1_armhf.deb ...
Unpacking libpython-dev:armhf (2.7.14-1) ...
Selecting previously unselected package libpython-all-dev:armhf.
Preparing to unpack .../32-libpython-all-dev_2.7.14-1_armhf.deb ...
Unpacking libpython-all-dev:armhf (2.7.14-1) ...
Selecting previously unselected package python-all.
Preparing to unpack .../33-python-all_2.7.14-1_armhf.deb ...
Unpacking python-all (2.7.14-1) ...
Selecting previously unselected package python2.7-dev.
Preparing to unpack .../34-python2.7-dev_2.7.14-2_armhf.deb ...
Unpacking python2.7-dev (2.7.14-2) ...
Selecting previously unselected package python-dev.
Preparing to unpack .../35-python-dev_2.7.14-1_armhf.deb ...
Unpacking python-dev (2.7.14-1) ...
Selecting previously unselected package python-all-dev.
Preparing to unpack .../36-python-all-dev_2.7.14-1_armhf.deb ...
Unpacking python-all-dev (2.7.14-1) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../37-python-pkg-resources_36.2.7-2_all.deb ...
Unpacking python-pkg-resources (36.2.7-2) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../38-python-setuptools_36.2.7-2_all.deb ...
Unpacking python-setuptools (36.2.7-2) ...
Selecting previously unselected package sbuild-build-depends-parsnp-dummy.
Preparing to unpack .../39-sbuild-build-depends-parsnp-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.3-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.54.1-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.6-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-5) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Processing triggers for libc-bin (2.24-14) ...
Setting up autotools-dev (20161112.1) ...
Setting up libmuscle-3.7-1 (3.7+4565-2) ...
Setting up libexpat1-dev:armhf (2.2.3-1) ...
Setting up bsdmainutils (9.0.14) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.14-2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libfile-stripnondeterminism-perl (0.039-1) ...
Setting up libmuscle-3.7-dev (3.7+4565-2) ...
Setting up gettext (0.19.8.1-4) ...
Setting up python2.7 (2.7.14-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up libpython-stdlib:armhf (2.7.14-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libpython2.7:armhf (2.7.14-2) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.14-2) ...
Setting up python2.7-dev (2.7.14-2) ...
Setting up python (2.7.14-1) ...
Setting up libtool (2.4.6-2) ...
Setting up libpython-dev:armhf (2.7.14-1) ...
Setting up po-debconf (1.0.20) ...
Setting up python-dev (2.7.14-1) ...
Setting up libpython-all-dev:armhf (2.7.14-1) ...
Setting up python-pkg-resources (36.2.7-2) ...
Setting up cython (0.26.1-0.3+rpi1) ...
Setting up python-all (2.7.14-1) ...
Setting up python-setuptools (36.2.7-2) ...
Setting up python-all-dev (2.7.14-1) ...
Setting up dh-autoreconf (14) ...
Setting up debhelper (10.9.2) ...
Setting up dh-strip-nondeterminism (0.039-1) ...
Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-5 cython_0.26.1-0.3+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.9.2 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1d1 g++-7_7.2.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-5 gcc-7-base_7.2.0-5 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-5 libassuan0_2.4.3-3 libatomic1_7.2.0-5 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libbinutils_2.29.1-3+rpi1 libblkid1_2.29.2-5 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-5 libcilkrts5_7.2.0-5 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.230 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-5 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.039-1 libgcc-7-dev_7.2.0-5 libgcc1_1:7.2.0-5 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-5 libgpg-error0_1.27-3 libhogweed4_3.3-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-5 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmuscle-3.7-1_3.7+4565-2 libmuscle-3.7-dev_3.7+4565-2 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-8 libpipeline1_1.4.2-1 libplymouth4_0.9.3-1 libpng16-16_1.6.32-3 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.14-1 libpython-dev_2.7.14-1 libpython-stdlib_2.7.14-1 libpython2.7_2.7.14-2 libpython2.7-dev_2.7.14-2 libpython2.7-minimal_2.7.14-2 libpython2.7-stdlib_2.7.14-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.29.2-5 libsqlite3-0_3.20.1-1 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsystemd0_234-3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-5 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libxml2_2.9.4+dfsg1-5 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-1 python-all_2.7.14-1 python-all-dev_2.7.14-1 python-dev_2.7.14-1 python-minimal_2.7.14-1 python-pkg-resources_36.2.7-2 python-setuptools_36.2.7-2 python2.7_2.7.14-2 python2.7-dev_2.7.14-2 python2.7-minimal_2.7.14-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 udev_234-3 util-linux_2.29.2-5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 23 19:12:10 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-3.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.2+dfsg
dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.2+dfsg-3.debian.tar.xz
dpkg-source: info: applying fix_libmuscle_path.patch
dpkg-source: info: applying fix_setup.py
dpkg-source: info: applying fix_install_path.patch
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.2+dfsg-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-3d40a7e2-a218-4e60-a2d8-6f802de7a058
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.2+dfsg-3+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build parsnp-1.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --with autoreconf
dh_auto_clean
python setup.py clean -a
running clean
'build/lib.linux-armv8l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv8l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with python2 --with autoreconf
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o -lgomp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE-3.7
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_test -a
make -j4 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --with autoreconf
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_install
make -j4 install DESTDIR=/<<BUILDDIR>>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
/usr/bin/install -c parsnp '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
# The actual user interface is the Python script so move the binary to /usr/lib
mkdir -p debian/parsnp/usr/lib/parsnp
mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/parsnp/usr/lib/parsnp/parsnp contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/parsnp/usr/lib/parsnp/parsnp was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.2+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../parsnp_1.2+dfsg-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build parsnp-1.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-28T20:04:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.2+dfsg-3+b1_armhf.changes:
-----------------------------------
Format: 1.8
Date: Wed, 23 Nov 2016 20:08:46 +0100
Source: parsnp (1.2+dfsg-3)
Binary: parsnp
Binary-Only: yes
Architecture: armhf
Version: 1.2+dfsg-3+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
parsnp - rapid core genome multi-alignment
Changes:
parsnp (1.2+dfsg-3+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
1ac55fd7eb45385a70039717f6a6016211f88d48 804886 parsnp-dbgsym_1.2+dfsg-3+b1_armhf.deb
967be22b144efdaf8479aed2c8cf5448cc01e7f8 503622 parsnp_1.2+dfsg-3+b1_armhf.deb
935c876b488e17e8786b2f06479a9509b798ac92 5437 parsnp_1.2+dfsg-3_armhf.buildinfo
Checksums-Sha256:
341986070a680c42ab9d2abccad188e06873f400cbf2cc82c63d8e6591d26262 804886 parsnp-dbgsym_1.2+dfsg-3+b1_armhf.deb
ff4c9cb04dfae287c92eefa19b92e71938cc6ca5e1556f0622c13209a3ea5ef1 503622 parsnp_1.2+dfsg-3+b1_armhf.deb
b304a2d304c46d3200e052d8e987cd803ac2c1a7063b1878534ab44bc4cf9392 5437 parsnp_1.2+dfsg-3_armhf.buildinfo
Files:
1c233b05558f7fe6b371717ff85114de 804886 debug optional parsnp-dbgsym_1.2+dfsg-3+b1_armhf.deb
9deecf69dfbd0a4a7e4a3e4bae92cfc7 503622 science optional parsnp_1.2+dfsg-3+b1_armhf.deb
7eb5363457c443915a0290155c811141 5437 science optional parsnp_1.2+dfsg-3_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.2+dfsg-3+b1_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 804886 bytes: control archive=462 bytes.
391 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp (1.2+dfsg-3)
Version: 1.2+dfsg-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 831
Depends: parsnp (= 1.2+dfsg-3+b1)
Section: debug
Priority: optional
Description: debug symbols for parsnp
Build-Ids: 124575e74fe234369eef7c632d500a9f803cb0ef
drwxr-xr-x root/root 0 2016-11-23 19:08 ./
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/debug/.build-id/12/
-rw-r--r-- root/root 839920 2016-11-23 19:08 ./usr/lib/debug/.build-id/12/4575e74fe234369eef7c632d500a9f803cb0ef.debug
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.2+dfsg-3+b1_armhf.deb
------------------------------
new debian package, version 2.0.
size 503622 bytes: control archive=2809 bytes.
1030 bytes, 19 lines control
5871 bytes, 59 lines md5sums
181 bytes, 9 lines * postinst #!/bin/sh
249 bytes, 14 lines * prerm #!/bin/sh
Package: parsnp
Source: parsnp (1.2+dfsg-3)
Version: 1.2+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 849
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmuscle-3.7-1, libstdc++6 (>= 5.2), python:any (>= 2.7), python-numpy, fasttree, mummer, phipack
Recommends: python-dendropy
Section: science
Priority: optional
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2016-11-23 19:08 ./
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/bin/
lrwxrwxrwx root/root 0 2016-11-23 19:08 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/lib/parsnp/
-rwxr-xr-x root/root 255508 2016-11-23 19:08 ./usr/lib/parsnp/parsnp
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 223 2016-11-23 19:08 ./usr/share/doc/parsnp/changelog.Debian.armhf.gz
-rw-r--r-- root/root 479 2016-11-23 19:08 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2095 2016-11-23 19:08 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 9837 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna.gz
-rw-r--r-- root/root 9841 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna.gz
-rw-r--r-- root/root 9886 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna.gz
-rw-r--r-- root/root 9830 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna.gz
-rw-r--r-- root/root 9844 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna.gz
-rw-r--r-- root/root 9850 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna.gz
-rw-r--r-- root/root 9848 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna.gz
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna.gz
-rw-r--r-- root/root 9789 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna.gz
-rw-r--r-- root/root 9893 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna.gz
-rw-r--r-- root/root 9858 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna.gz
-rw-r--r-- root/root 9915 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna.gz
-rw-r--r-- root/root 9803 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna.gz
-rw-r--r-- root/root 9756 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7149.fna.gz
-rw-r--r-- root/root 9597 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7569.fna.gz
-rw-r--r-- root/root 9667 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7770.fna.gz
-rw-r--r-- root/root 9813 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna.gz
-rw-r--r-- root/root 9866 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna.gz
-rw-r--r-- root/root 9874 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna.gz
-rw-r--r-- root/root 9877 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna.gz
-rw-r--r-- root/root 9795 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna.gz
-rw-r--r-- root/root 9879 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna.gz
-rw-r--r-- root/root 9892 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna.gz
-rw-r--r-- root/root 9851 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna.gz
-rw-r--r-- root/root 9856 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar4.fna.gz
-rw-r--r-- root/root 9865 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_14_2013.fna.gz
-rw-r--r-- root/root 9836 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_1_2012.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_2_2012.fna.gz
-rw-r--r-- root/root 9829 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_3_2013.fna.gz
-rw-r--r-- root/root 9856 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_4_2013.fna.gz
-rw-r--r-- root/root 9853 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_5_2013.fna.gz
-rw-r--r-- root/root 9859 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Riyadh_9_2013.fna.gz
-rw-r--r-- root/root 9850 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Taif_1_2013.fna.gz
-rw-r--r-- root/root 9869 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna.gz
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/doc/parsnp/examples/mers_virus/ref/
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna.gz
-rw-r--r-- root/root 21102 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk.gz
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/man/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/man/man1/
-rw-r--r-- root/root 1478 2016-11-23 19:08 ./usr/share/man/man1/parsnp.1.gz
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/parsnp/
-rwxr-xr-x root/root 48856 2016-11-23 19:08 ./usr/share/parsnp/Parsnp.py
-rw-r--r-- root/root 395 2015-03-24 06:34 ./usr/share/parsnp/template.ini
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/python/
drwxr-xr-x root/root 0 2016-11-23 19:08 ./usr/share/python/runtime.d/
-rwxr-xr-x root/root 133 2016-11-23 19:08 ./usr/share/python/runtime.d/parsnp.rtupdate
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13724
Build-Time: 77
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 151
Job: parsnp_1.2+dfsg-3
Machine Architecture: armhf
Package: parsnp
Package-Time: 244
Source-Version: 1.2+dfsg-3
Space: 13724
Status: successful
Version: 1.2+dfsg-3+b1
--------------------------------------------------------------------------------
Finished at 2017-10-28T20:04:26Z
Build needed 00:04:04, 13724k disk space