parsnp →
1.2+dfsg-2 →
armhf → 2016-10-17 14:42:16
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| parsnp 1.2+dfsg-2 (armhf) Mon, 17 Oct 2016 14:29:20 +0000 |
+==============================================================================+
Package: parsnp
Version: 1.2+dfsg-2
Source Version: 1.2+dfsg-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-4867e1f5-6a94-4ac2-a105-ba4a701d29d8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9357 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.3 MB]
Fetched 20.7 MB in 22s (919 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/parsnp.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/parsnp.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 103 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main parsnp 1.2+dfsg-2 (dsc) [1992 B]
Get:2 http://172.17.0.1/private stretch-staging/main parsnp 1.2+dfsg-2 (tar) [93.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main parsnp 1.2+dfsg-2 (diff) [7872 B]
Fetched 103 kB in 0s (1857 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/parsnp-218262/parsnp-1.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-218262' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6dcjtv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6dcjtv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6dcjtv/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Packages [432 B]
Fetched 2080 B in 0s (3613 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libffi6 libfuse2 libgnutls30 libhogweed4
libldap-2.4-2 libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules
libsasl2-modules-db libssl1.0.2 libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14088 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev
dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<<BUILDDIR>>/resolver-6dcjtv/apt_archive/sbuild-build-depends-parsnp-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Sources [532 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ Packages [609 B]
Fetched 2446 B in 0s (4054 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install parsnp build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libfuse2 libgnutls30 libhogweed4 libldap-2.4-2
libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules libsasl2-modules-db
libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal
sbuild-build-depends-parsnp-dummy
0 upgraded, 53 newly installed, 0 to remove and 16 not upgraded.
Need to get 54.2 MB of archives.
After this operation, 131 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6dcjtv/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [806 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.11 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-3 [388 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-3 [1174 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-3 [1843 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-3 [279 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.12-3 [913 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2 [805 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf cython armhf 0.23.4+git4-g7eed8d8-2 [1452 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.0-2+rpi1 [2523 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.2.0-1 [117 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libmuscle-3.7-1 armhf 3.7+4565-2 [205 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libmuscle-3.7-dev armhf 3.7+4565-2 [269 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.12-3 [27.5 MB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-2 [19.8 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libpython-all-dev armhf 2.7.11-2 [958 B]
Get:48 http://172.17.0.1/private stretch-staging/main armhf python-all armhf 2.7.11-2 [940 B]
Get:49 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.12-3 [278 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-2 [1132 B]
Get:51 http://172.17.0.1/private stretch-staging/main armhf python-all-dev armhf 2.7.11-2 [964 B]
Get:52 http://172.17.0.1/private stretch-staging/main armhf python-pkg-resources all 28.0.0-1 [163 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf python-setuptools all 28.0.0-1 [214 kB]
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Unpacking libpython-dev:armhf (2.7.11-2) ...
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Unpacking sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up groff-base (1.22.3-8) ...
Setting up libglib2.0-0:armhf (2.50.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-4) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2) ...
Setting up libmagic-mgc (1:5.28-4) ...
Setting up libmagic1:armhf (1:5.28-4) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Processing triggers for libc-bin (2.24-3) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libmuscle-3.7-1 (3.7+4565-2) ...
Setting up libexpat1-dev:armhf (2.2.0-1) ...
Setting up bsdmainutils (9.0.11) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.12-3) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libmuscle-3.7-dev (3.7+4565-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up python2.7 (2.7.12-3) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-4) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libpython2.7:armhf (2.7.12-3) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.12-3) ...
Setting up python2.7-dev (2.7.12-3) ...
Setting up python (2.7.11-2) ...
Setting up libtool (2.4.6-2) ...
Setting up libpython-dev:armhf (2.7.11-2) ...
Setting up po-debconf (1.0.20) ...
Setting up python-dev (2.7.11-2) ...
Setting up libpython-all-dev:armhf (2.7.11-2) ...
Setting up python-pkg-resources (28.0.0-1) ...
Setting up cython (0.23.4+git4-g7eed8d8-2) ...
Setting up python-all (2.7.11-2) ...
Setting up python-setuptools (28.0.0-1) ...
Setting up python-all-dev (2.7.11-2) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (10.2.2) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-3) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27-8 dpkg-dev_1.18.10 g++-6_6.2.0-6+rpi1 gcc-6_6.2.0-6+rpi1 libc6-dev_2.24-3 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.3.1 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.40 bash_4.4-1 binutils_2.27-8 bsdmainutils_9.0.11 bsdutils_1:2.28.2-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.2.0-6+rpi1 cython_0.23.4+git4-g7eed8d8-2 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dirmngr_2.1.15-3 dmsetup_2:1.02.133-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.0-6+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.0-6+rpi1 gcc-6-base_6.2.0-6+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.15-3 gnupg-agent_2.1.15-3 gnupg-l10n_2.1.15-3 gpgv_2.1.15-3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4+b1 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.2.0-6+rpi1 libassuan0_2.4.3-1 libatomic1_6.2.0-6+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblkid1_2.28.2-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-3 libc-dev-bin_2.24-3 libc6_2.24-3 libc6-dev_2.24-3 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-6+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.10-1 libdebconfclient0_0.217 libdevmapper1.02.1_2:1.02.133-1 libdpkg-perl_1.18.10 libdrm2_2.4.71-1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.28.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.2.0-6+rpi1 libgcc1_1:6.2.0-6+rpi1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libglib2.0-0_2.50.0-2+rpi1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.4-2 libgomp1_6.2.0-6+rpi1 libgpg-error0_1.24-1 libhogweed4_3.2-1 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b3 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28.2-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmuscle-3.7-1_3.7+4565-2 libmuscle-3.7-dev_3.7+4565-2 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.2-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-2 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-3 libpython2.7-dev_2.7.12-3 libpython2.7-minimal_2.7.12-3 libpython2.7-stdlib_2.7.12-3 libreadline6_6.3-9 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-4.1 libsmartcols1_2.28.2-1 libsqlite3-0_3.14.2-1 libss2_1.43.3-1 libssl1.0.2_1.0.2j-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 libsystemd0_231-9 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.0-6+rpi1 libudev1_231-9 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1 libxml2_2.9.4+dfsg1-2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.07-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.2-1 multiarch-support_2.24-3 nano_2.7.0-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 po-debconf_1.0.20 procps_2:3.3.12-2 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python-pkg-resources_28.0.0-1 python-setuptools_28.0.0-1 python2.7_2.7.12-3 python2.7-dev_2.7.12-3 python2.7-minimal_2.7.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_231-9 systemd-sysv_231-9 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016g-1 udev_231-9 util-linux_2.28.2-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 11 17:52:24 2016 UTC
gpgv: using RSA key E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-2.dsc
dpkg-source: info: extracting parsnp in /<<BUILDDIR>>/parsnp-1.2+dfsg
dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_1.2+dfsg-2.debian.tar.xz
dpkg-source: info: applying fix_libmuscle_path.patch
dpkg-source: info: applying fix_setup.py
dpkg-source: info: applying fix_install_path.patch
dpkg-source: info: applying avoid_rpath.patch
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-4867e1f5-6a94-4ac2-a105-ba4a701d29d8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 1.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build parsnp-1.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --with autoreconf
dh_testdir
dh_auto_clean
python setup.py clean -a
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with python2 --with autoreconf
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see:
configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking libMUSCLE/muscle.h usability... yes
checking libMUSCLE/muscle.h presence... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making all in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
g++ -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/parsnp-1.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -lgomp -lstdc++ -lpthread -std=gnu++0x -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE-3.7 -fPIE -pie -Wl,-z,relro -Wl,-z,now -o parsnp parsnp-MuscleInterface.o parsnp-parsnp.o parsnp-LCB.o parsnp-LCR.o parsnp-TMum.o parsnp-Converter.o parsnp-iniFile.o
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_test -a
make -j1 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch --with python2 --with autoreconf
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_auto_install
make -j1 install DESTDIR=/<<BUILDDIR>>/parsnp-1.2\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
Making install in src
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
/bin/mkdir -p '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
/usr/bin/install -c parsnp '/<<BUILDDIR>>/parsnp-1.2+dfsg/debian/parsnp/usr/bin'
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
# The actual user interface is the Python script so move the binary to /usr/lib
mkdir -p debian/parsnp/usr/lib/parsnp
mv debian/parsnp/usr/bin/parsnp debian/parsnp/usr/lib/parsnp
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<BUILDDIR>>/parsnp-1.2+dfsg'
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_1.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'parsnp' in '../parsnp_1.2+dfsg-2_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../parsnp_1.2+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build parsnp-1.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-10-17T14:40:01Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
parsnp_1.2+dfsg-2_armhf.changes:
--------------------------------
Format: 1.8
Date: Tue, 11 Oct 2016 17:00:18 +0000
Source: parsnp
Binary: parsnp
Architecture: armhf
Version: 1.2+dfsg-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
parsnp - rapid core genome multi-alignment
Closes: 838174
Changes:
parsnp (1.2+dfsg-2) unstable; urgency=medium
.
* Team upload.
.
[ Andreas Tille ]
* Add copyright statement at ftpmaster request
.
[ Sascha Steinbiss ]
* Drop -m64 from CXXFLAGS.
This addresses FTBFS on 32-bit systems. Thanks to Aaron M. Ucko for
the hint.
Closes: #838174
Checksums-Sha1:
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aa4460ee4b8b4852549211c8bb8fd0d4540c62b6 508760 parsnp_1.2+dfsg-2_armhf.deb
Checksums-Sha256:
1469bd529a876d573411575c5dea714375f50bf9489d1dbfc0020d391e8e3d1b 791702 parsnp-dbgsym_1.2+dfsg-2_armhf.deb
6f283c98cc0d94116ae69fd165c69011c2bd9d74a45dd68a8d031f4b10308e82 508760 parsnp_1.2+dfsg-2_armhf.deb
Files:
d4db631cb3dc6cd4908737ad9f727453 791702 debug extra parsnp-dbgsym_1.2+dfsg-2_armhf.deb
6f9ff47bfc1d7ac1c29186a1fb1bc3c0 508760 science optional parsnp_1.2+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
parsnp-dbgsym_1.2+dfsg-2_armhf.deb
----------------------------------
new debian package, version 2.0.
size 791702 bytes: control archive=501 bytes.
440 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: parsnp-dbgsym
Source: parsnp
Version: 1.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 817
Depends: parsnp (= 1.2+dfsg-2)
Section: debug
Priority: extra
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: Debug symbols for parsnp
Auto-Built-Package: debug-symbols
Build-Ids: ff03933e631704917d6819b3e895774c0b5bf4d0
drwxr-xr-x root/root 0 2016-10-11 17:00 ./
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 826172 2016-10-11 17:00 ./usr/lib/debug/.build-id/ff/03933e631704917d6819b3e895774c0b5bf4d0.debug
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-10-11 17:00 ./usr/share/doc/parsnp-dbgsym -> parsnp
parsnp_1.2+dfsg-2_armhf.deb
---------------------------
new debian package, version 2.0.
size 508760 bytes: control archive=2772 bytes.
999 bytes, 18 lines control
5790 bytes, 58 lines md5sums
181 bytes, 9 lines * postinst #!/bin/sh
249 bytes, 14 lines * prerm #!/bin/sh
Package: parsnp
Version: 1.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 860
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libmuscle-3.7-1, libstdc++6 (>= 5.2), python:any (>= 2.7), python-numpy, fasttree, mummer, phipack
Recommends: python-dendropy
Section: science
Priority: optional
Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html
Description: rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
drwxr-xr-x root/root 0 2016-10-11 17:00 ./
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/bin/
lrwxrwxrwx root/root 0 2016-10-11 17:00 ./usr/bin/parsnp -> ../share/parsnp/Parsnp.py
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/lib/parsnp/
-rwxr-xr-x root/root 267840 2016-10-11 17:00 ./usr/lib/parsnp/parsnp
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/doc/parsnp/
-rw-r--r-- root/root 348 2016-10-11 17:00 ./usr/share/doc/parsnp/changelog.Debian.gz
-rw-r--r-- root/root 2095 2016-10-11 16:53 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root 0 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root 0 2016-10-11 17:00 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
-rw-r--r-- root/root 9837 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_12_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_15_2013.fna.gz
-rw-r--r-- root/root 9841 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_16_2013.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_17_2013.fna.gz
-rw-r--r-- root/root 9886 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_18_2013.fna.gz
-rw-r--r-- root/root 9887 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_19_2013.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_1_2013.fna.gz
-rw-r--r-- root/root 9830 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_21_2013.fna.gz
-rw-r--r-- root/root 9847 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_25_2013.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_2_2013.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_3_2013.fna.gz
-rw-r--r-- root/root 9844 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Al-Hasa_4_2013.fna.gz
-rw-r--r-- root/root 9850 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna.gz
-rw-r--r-- root/root 9846 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna.gz
-rw-r--r-- root/root 9848 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna.gz
-rw-r--r-- root/root 9824 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna.gz
-rw-r--r-- root/root 9789 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna.gz
-rw-r--r-- root/root 9893 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna.gz
-rw-r--r-- root/root 9858 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna.gz
-rw-r--r-- root/root 9855 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna.gz
-rw-r--r-- root/root 9915 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna.gz
-rw-r--r-- root/root 9803 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna.gz
-rw-r--r-- root/root 9756 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7149.fna.gz
-rw-r--r-- root/root 9597 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7569.fna.gz
-rw-r--r-- root/root 9667 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_2014_C7770.fna.gz
-rw-r--r-- root/root 9813 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna.gz
-rw-r--r-- root/root 9860 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna.gz
-rw-r--r-- root/root 9866 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna.gz
-rw-r--r-- root/root 9874 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_13.fna.gz
-rw-r--r-- root/root 9877 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna.gz
-rw-r--r-- root/root 9795 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KJ477102.1.fna.gz
-rw-r--r-- root/root 9879 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna.gz
-rw-r--r-- root/root 9889 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-376.fna.gz
-rw-r--r-- root/root 9892 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-378.fna.gz
-rw-r--r-- root/root 9885 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-503.fna.gz
-rw-r--r-- root/root 9891 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-505.fna.gz
-rw-r--r-- root/root 9851 2015-03-24 06:34 ./usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna.gz
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13328
Build-Time: 265
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 331
Job: parsnp_1.2+dfsg-2
Machine Architecture: armhf
Package: parsnp
Package-Time: 641
Source-Version: 1.2+dfsg-2
Space: 13328
Status: successful
Version: 1.2+dfsg-2
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Finished at 2016-10-17T14:40:01Z
Build needed 00:10:41, 13328k disc space