openbabel →
3.0.0+dfsg-3+b1 →
armhf → 2020-03-29 03:32:25
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| openbabel 3.0.0+dfsg-3+b1 (armhf) Sun, 29 Mar 2020 00:50:45 +0000 |
+==============================================================================+
Package: openbabel
Version: 3.0.0+dfsg-3+b1
Source Version: 3.0.0+dfsg-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-973c0a78-a82d-4578-9aa9-8fdaeb8d314f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
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Reading package lists...
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| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'openbabel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/openbabel.git
Please use:
git clone https://salsa.debian.org/debichem-team/openbabel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.6 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main openbabel 3.0.0+dfsg-3 (dsc) [2779 B]
Get:2 http://172.17.0.1/private bullseye-staging/main openbabel 3.0.0+dfsg-3 (tar) [22.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main openbabel 3.0.0+dfsg-3 (diff) [22.4 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/openbabel-nArKLj/openbabel-3.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/openbabel-nArKLj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1bdmL7/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1bdmL7/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1bdmL7/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Packages [431 B]
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Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-1bdmL7/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12229 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper (>= 12), dh-python, doxygen, ghostscript, graphviz, libboost-all-dev, libcairo2-dev, libeigen3-dev, libschroedinger-maeparser-dev (>= 1.2.2), libperl-dev, libwxgtk3.0-gtk3-dev, libxml2-dev, pkg-config, python3-dev, python3-setuptools, rapidjson-dev, swig, texlive-binaries, texlive-latex-base, zlib1g-dev
Filtered Build-Depends: cmake, debhelper (>= 12), dh-python, doxygen, ghostscript, graphviz, libboost-all-dev, libcairo2-dev, libeigen3-dev, libschroedinger-maeparser-dev (>= 1.2.2), libperl-dev, libwxgtk3.0-gtk3-dev, libxml2-dev, pkg-config, python3-dev, python3-setuptools, rapidjson-dev, swig, texlive-binaries, texlive-latex-base, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-openbabel-dummy' in '/<<BUILDDIR>>/resolver-1bdmL7/apt_archive/sbuild-build-depends-openbabel-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-openbabel-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Sources [653 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Packages [734 B]
Fetched 2720 B in 1s (3381 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-1bdmL7/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install openbabel build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data cpp-8 dbus dbus-user-session dconf-gsettings-backend
dconf-service debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dmsetup doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core
fonts-lmodern fonts-urw-base35 gcc-10-base gcc-8 gcc-8-base gettext
gettext-base gfortran-8 ghostscript glib-networking glib-networking-common
glib-networking-services graphviz groff-base gsettings-desktop-schemas
gtk-update-icon-cache hicolor-icon-theme ibverbs-providers icu-devtools
intltool-debian libapparmor1 libarchive-zip-perl libarchive13 libargon2-1
libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatomic1 libatspi2.0-0
libavahi-client3 libavahi-common-data libavahi-common3 libblkid-dev
libboost-all-dev libboost-atomic-dev libboost-atomic1.67-dev
libboost-atomic1.67.0 libboost-chrono-dev libboost-chrono1.67-dev
libboost-chrono1.67.0 libboost-container-dev libboost-container1.67-dev
libboost-container1.67.0 libboost-context-dev libboost-context1.67-dev
libboost-context1.67.0 libboost-coroutine-dev libboost-coroutine1.67-dev
libboost-coroutine1.67.0 libboost-date-time-dev libboost-date-time1.67-dev
libboost-date-time1.67.0 libboost-dev libboost-exception-dev
libboost-exception1.67-dev libboost-fiber-dev libboost-fiber1.67-dev
libboost-fiber1.67.0 libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-graph-dev libboost-graph-parallel-dev
libboost-graph-parallel1.67-dev libboost-graph-parallel1.67.0
libboost-graph1.67-dev libboost-graph1.67.0 libboost-iostreams-dev
libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-locale-dev
libboost-locale1.67-dev libboost-locale1.67.0 libboost-log-dev
libboost-log1.67-dev libboost-log1.67.0 libboost-math-dev
libboost-math1.67-dev libboost-math1.67.0 libboost-mpi-dev
libboost-mpi-python-dev libboost-mpi-python1.67-dev
libboost-mpi-python1.67.0 libboost-mpi1.67-dev libboost-mpi1.67.0
libboost-numpy-dev libboost-numpy1.67-dev libboost-numpy1.67.0
libboost-program-options-dev libboost-program-options1.67-dev
libboost-program-options1.67.0 libboost-python-dev libboost-python1.67-dev
libboost-python1.67.0 libboost-random-dev libboost-random1.67-dev
libboost-random1.67.0 libboost-regex-dev libboost-regex1.67-dev
libboost-regex1.67.0 libboost-serialization-dev
libboost-serialization1.67-dev libboost-serialization1.67.0
libboost-signals-dev libboost-signals1.67-dev libboost-signals1.67.0
libboost-stacktrace-dev libboost-stacktrace1.67-dev
libboost-stacktrace1.67.0 libboost-system-dev libboost-system1.67-dev
libboost-system1.67.0 libboost-test-dev libboost-test1.67-dev
libboost-test1.67.0 libboost-thread-dev libboost-thread1.67-dev
libboost-thread1.67.0 libboost-timer-dev libboost-timer1.67-dev
libboost-timer1.67.0 libboost-tools-dev libboost-type-erasure-dev
libboost-type-erasure1.67-dev libboost-type-erasure1.67.0 libboost-wave-dev
libboost-wave1.67-dev libboost-wave1.67.0 libboost1.67-dev
libboost1.67-tools-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcbor0 libcc1-0
libcdt5 libcgraph6 libclang1-9 libcolord2 libcroco3 libcryptsetup12 libcups2
libcurl4 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl
libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1
libeigen3-dev libelf1 libepoxy0 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libffi-dev libfido2-1
libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev
libfreetype-dev libfreetype6 libfreetype6-dev libfribidi0 libgbm1
libgcc-8-dev libgcc-s1 libgcc1 libgd3 libgdk-pixbuf2.0-0
libgdk-pixbuf2.0-common libgfortran-8-dev libgfortran5 libgl-dev libgl1
libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0
libglx-dev libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgs9 libgs9-common
libgssapi-krb5-2 libgtk-3-0 libgtk-3-common libgts-0.7-5 libgvc6 libgvpr2
libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15
libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu63 libidn11
libijs-0.35 libip4tc2 libjbig0 libjbig2dec0 libjpeg62-turbo libjson-c4
libjson-glib-1.0-0 libjson-glib-1.0-common libjsoncpp1 libk5crypto3
libkeyutils1 libkmod2 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1
liblcms2-2 libllvm9 libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1
libmount-dev libmpdec2 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnotify4 libopengl-dev libopengl0
libopenjp2-7 libopenmpi-dev libopenmpi3 libpam-systemd libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4
libpciaccess0 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl-dev
libpipeline1 libpixman-1-0 libpixman-1-dev libpmix2 libpng-dev libpng16-16
libprocps8 libproxy1v5 libpsl5 libptexenc1 libpthread-stubs0-dev
libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev
libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
libpython3.8-stdlib librest-0.7-0 librhash0 librsvg2-2 librsvg2-common
librtmp1 libschroedinger-maeparser-dev libschroedinger-maeparser1
libselinux1 libselinux1-dev libsensors-config libsensors5 libsepol1-dev
libsigsegv2 libsm-dev libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libssh2-1
libssl1.1 libstdc++6 libsub-override-perl libsynctex2 libteckit0 libtexlua53
libtexluajit2 libthai-data libthai0 libtiff5 libtinfo5 libtool libubsan1
libuchardet0 libuv1 libwayland-client0 libwayland-cursor0 libwayland-egl1
libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxbase3.0-dev
libwxgtk3.0-gtk3-0v5 libwxgtk3.0-gtk3-dev libx11-6 libx11-data libx11-dev
libx11-xcb1 libxapian30 libxau-dev libxau6 libxaw7 libxcb-dri2-0
libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev
libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxml2-dev
libxmu6 libxnvctrl0 libxpm4 libxrandr2 libxrender-dev libxrender1
libxshmfence1 libxt6 libxxf86vm1 libz3-4 libzzip-0-13 m4 man-db mime-support
mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client pkg-config po-debconf poppler-data procps
python python-dev python-minimal python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.8 python3.8-dev python3.8-minimal rapidjson-dev
sensible-utils shared-mime-info swig swig4.0 systemd systemd-sysv t1utils
tex-common texlive-base texlive-binaries texlive-latex-base ucf uuid-dev
wx-common wx3.0-headers x11-common x11proto-core-dev x11proto-dev
x11proto-xext-dev xdg-utils xkb-data xorg-sgml-doctools xtrans-dev
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build gcc-8-locales dh-make doxygen-latex
doxygen-doc doxygen-gui fonts-freefont-otf | fonts-freefont-ttf
fonts-texgyre gcc-8-doc gettext-doc libasprintf-dev libgettextpo-dev
gfortran-8-doc libcoarrays-dev ghostscript-x gsfonts graphviz-doc groff
lrzip libboost-doc libboost1.67-doc gccxml libboost-contract1.67-dev
libmpfrc++-dev libntl-dev xsltproc docbook-xml docbook-xsl default-jdk fop
libcairo2-doc colord cups-common libeigen3-doc freetype2-doc libgd-tools
libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils krb5-doc krb5-user gvfs libice-doc
icu-doc liblcms2-utils libtool-doc openmpi-doc pciutils librsvg2-bin
lm-sensors libsm-doc gcj-jdk wx3.0-doc libx11-doc xapian-tools libxcb-doc
libxext-doc m4-doc apparmor less www-browser opencl-icd gfortran
| fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
fonts-arphic-uming fonts-nanum python-doc python-tk python2-doc
python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python-setuptools-doc python3.8-venv python3.8-doc swig-doc swig-examples
swig4.0-examples swig4.0-doc systemd-container policykit-1 perl-tk xpdf
| pdf-viewer xzdec texlive-latex-base-doc
Recommended packages:
curl | wget | lynx fonts-liberation at-spi2-core ca-certificates
libarchive-cpio-perl libgdk-pixbuf2.0-bin xdg-user-dirs fonts-droid-fallback
libgtk-3-bin libgts-bin krb5-locales libgpm2 notification-daemon
libcoarrays-openmpi-dev libpng-tools publicsuffix xauth
libmail-sendmail-perl psmisc libnss-systemd lmodern dvisvgm zip
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data cpp-8 dbus dbus-user-session dconf-gsettings-backend
dconf-service debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dmsetup doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core
fonts-lmodern fonts-urw-base35 gcc-8 gcc-8-base gettext gettext-base
gfortran-8 ghostscript glib-networking glib-networking-common
glib-networking-services graphviz groff-base gsettings-desktop-schemas
gtk-update-icon-cache hicolor-icon-theme ibverbs-providers icu-devtools
intltool-debian libapparmor1 libarchive-zip-perl libarchive13 libargon2-1
libatk-bridge2.0-0 libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3
libavahi-common-data libavahi-common3 libblkid-dev libboost-all-dev
libboost-atomic-dev libboost-atomic1.67-dev libboost-atomic1.67.0
libboost-chrono-dev libboost-chrono1.67-dev libboost-chrono1.67.0
libboost-container-dev libboost-container1.67-dev libboost-container1.67.0
libboost-context-dev libboost-context1.67-dev libboost-context1.67.0
libboost-coroutine-dev libboost-coroutine1.67-dev libboost-coroutine1.67.0
libboost-date-time-dev libboost-date-time1.67-dev libboost-date-time1.67.0
libboost-dev libboost-exception-dev libboost-exception1.67-dev
libboost-fiber-dev libboost-fiber1.67-dev libboost-fiber1.67.0
libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-graph-dev libboost-graph-parallel-dev
libboost-graph-parallel1.67-dev libboost-graph-parallel1.67.0
libboost-graph1.67-dev libboost-graph1.67.0 libboost-iostreams-dev
libboost-iostreams1.67-dev libboost-iostreams1.67.0 libboost-locale-dev
libboost-locale1.67-dev libboost-locale1.67.0 libboost-log-dev
libboost-log1.67-dev libboost-log1.67.0 libboost-math-dev
libboost-math1.67-dev libboost-math1.67.0 libboost-mpi-dev
libboost-mpi-python-dev libboost-mpi-python1.67-dev
libboost-mpi-python1.67.0 libboost-mpi1.67-dev libboost-mpi1.67.0
libboost-numpy-dev libboost-numpy1.67-dev libboost-numpy1.67.0
libboost-program-options-dev libboost-program-options1.67-dev
libboost-program-options1.67.0 libboost-python-dev libboost-python1.67-dev
libboost-python1.67.0 libboost-random-dev libboost-random1.67-dev
libboost-random1.67.0 libboost-regex-dev libboost-regex1.67-dev
libboost-regex1.67.0 libboost-serialization-dev
libboost-serialization1.67-dev libboost-serialization1.67.0
libboost-signals-dev libboost-signals1.67-dev libboost-signals1.67.0
libboost-stacktrace-dev libboost-stacktrace1.67-dev
libboost-stacktrace1.67.0 libboost-system-dev libboost-system1.67-dev
libboost-system1.67.0 libboost-test-dev libboost-test1.67-dev
libboost-test1.67.0 libboost-thread-dev libboost-thread1.67-dev
libboost-thread1.67.0 libboost-timer-dev libboost-timer1.67-dev
libboost-timer1.67.0 libboost-tools-dev libboost-type-erasure-dev
libboost-type-erasure1.67-dev libboost-type-erasure1.67.0 libboost-wave-dev
libboost-wave1.67-dev libboost-wave1.67.0 libboost1.67-dev
libboost1.67-tools-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libcbor0 libcdt5
libcgraph6 libclang1-9 libcolord2 libcroco3 libcryptsetup12 libcups2
libcurl4 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl
libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libedit2 libegl-dev libegl-mesa0 libegl1
libeigen3-dev libelf1 libepoxy0 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libffi-dev libfido2-1
libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev
libfreetype-dev libfreetype6 libfreetype6-dev libfribidi0 libgbm1
libgcc-8-dev libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common
libgfortran-8-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglib2.0-0
libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin
libglu1-mesa libglu1-mesa-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0
libglx0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgtk-3-0
libgtk-3-common libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1
libice-dev libice6 libicu-dev libicu63 libidn11 libijs-0.35 libip4tc2
libjbig0 libjbig2dec0 libjpeg62-turbo libjson-c4 libjson-glib-1.0-0
libjson-glib-1.0-common libjsoncpp1 libk5crypto3 libkeyutils1 libkmod2
libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libllvm9
libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmount-dev libmpdec2
libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200
libnl-route-3-dev libnotify4 libopengl-dev libopengl0 libopenjp2-7
libopenmpi-dev libopenmpi3 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpciaccess0
libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2
libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1
libpixman-1-0 libpixman-1-dev libpmix2 libpng-dev libpng16-16 libprocps8
libproxy1v5 libpsl5 libptexenc1 libpthread-stubs0-dev libpython-dev
libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev
libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal
libpython3.8-stdlib librest-0.7-0 librhash0 librsvg2-2 librsvg2-common
librtmp1 libschroedinger-maeparser-dev libschroedinger-maeparser1
libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigsegv2
libsm-dev libsm6 libsoup-gnome2.4-1 libsoup2.4-1 libssh2-1 libssl1.1
libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2
libthai-data libthai0 libtiff5 libtinfo5 libtool libuchardet0 libuv1
libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0
libwebp6 libwxbase3.0-0v5 libwxbase3.0-dev libwxgtk3.0-gtk3-0v5
libwxgtk3.0-gtk3-dev libx11-6 libx11-data libx11-dev libx11-xcb1 libxapian30
libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0
libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev
libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxfixes3 libxi6 libxinerama1 libxkbcommon0 libxml2 libxml2-dev
libxmu6 libxnvctrl0 libxpm4 libxrandr2 libxrender-dev libxrender1
libxshmfence1 libxt6 libxxf86vm1 libz3-4 libzzip-0-13 m4 man-db mime-support
mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin
openmpi-common openssh-client pkg-config po-debconf poppler-data procps
python python-dev python-minimal python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-setuptools python3.8 python3.8-dev python3.8-minimal rapidjson-dev
sbuild-build-depends-openbabel-dummy sensible-utils shared-mime-info swig
swig4.0 systemd systemd-sysv t1utils tex-common texlive-base
texlive-binaries texlive-latex-base ucf uuid-dev wx-common wx3.0-headers
x11-common x11proto-core-dev x11proto-dev x11proto-xext-dev xdg-utils
xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libselinux1
libstdc++6 libubsan1
9 upgraded, 469 newly installed, 0 to remove and 16 not upgraded.
Need to get 326 MB of archives.
After this operation, 1758 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1bdmL7/apt_archive ./ sbuild-build-depends-openbabel-dummy 0.invalid.0 [1020 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10-20200324-1+rpi1 [8216 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10-20200324-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10-20200324-1+rpi1 [196 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10-20200324-1+rpi1 [408 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10-20200324-1+rpi1 [82.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10-20200324-1+rpi1 [36.1 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10-20200324-1+rpi1 [36.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10-20200324-1+rpi1 [31.7 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libapparmor1 armhf 2.13.3-7 [92.3 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libargon2-1 armhf 0~20171227-0.2 [20.4 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libselinux1 armhf 3.0-1+b1 [78.4 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf dmsetup armhf 2:1.02.167-1+b2 [91.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1+b2 [132 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libjson-c4 armhf 0.13.1+dfsg-7 [33.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libcryptsetup12 armhf 2:2.3.0-1 [213 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libip4tc2 armhf 1.8.4-3 [67.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libkmod2 armhf 27-2 [48.5 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf systemd armhf 244.3-1+rpi1 [3570 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf systemd-sysv armhf 244.3-1+rpi1 [104 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf poppler-data all 0.4.9-2 [1473 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.17-1+b1 [395 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.17-1+b1 [1094 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.17-2 [41.4 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.17-2 [21.1 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.17-1+b1 [1820 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.17-1+b1 [309 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.17-2 [20.9 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.17-2 [20.9 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.17-2 [41.7 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.17-2 [22.9 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-2 [37.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-2 [20.7 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-2 [62.6 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf tex-common all 6.13 [53.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf gcc-8-base armhf 8.4.0-1+rpi1 [194 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-4 [59.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-4 [238 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.16-2+b1 [189 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf dbus armhf 1.12.16-2+b1 [212 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libpam-systemd armhf 244.3-1+rpi1 [201 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libfido2-1 armhf 1.3.1-1 [42.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7 [61.4 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7 [112 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7 [320 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7 [135 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.2p1-4 [781 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-5 [133 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf shared-mime-info armhf 1.10-1 [762 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-common all 2.40.0+dfsg-3 [317 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.40.0+dfsg-3 [158 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf gtk-update-icon-cache armhf 3.24.14-1 [83.3 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-5 [108 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-5 [99.4 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-8 [168 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-8 [62.4 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-8 [52.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf librsvg2-2 armhf 2.46.4-1 [1071 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf librsvg2-common armhf 2.46.4-1 [23.6 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf adwaita-icon-theme all 3.36.0-1 [10.9 MB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-1 [1628 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-2 [292 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.34.2-1 [114 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-1 [2648 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf cpp-8 armhf 8.4.0-1+rpi1 [6810 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf dbus-user-session armhf 1.12.16-2+b1 [93.9 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libdconf1 armhf 0.36.0-1 [38.7 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf dconf-service armhf 0.36.0-1 [34.4 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf dconf-gsettings-backend armhf 0.36.0-1 [26.0 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libgcc-8-dev armhf 8.4.0-1+rpi1 [594 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf gcc-8 armhf 8.4.0-1+rpi1 [7273 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.10 [184 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.7-4 [5477 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libllvm9 armhf 1:9.0.1-10+rpi1 [13.1 MB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libclang1-9 armhf 1:9.0.1-10+rpi1 [5578 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libxapian30 armhf 1.4.14-2 [951 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.16-2 [7624 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf fonts-lmodern all 2.004.5-6 [4539 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf fonts-urw-base35 all 20170801.1-3 [6333 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10-20200324-1+rpi1 [230 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-8-dev armhf 8.4.0-1+rpi1 [249 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf gfortran-8 armhf 8.4.0-1+rpi1 [7227 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libgs9-common all 9.52~dfsg-1 [732 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.7-5 [122 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.7-5 [51.2 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.7-5 [54.2 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.1-11 [309 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libidn11 armhf 1.33-2.2 [113 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libijs-0.35 armhf 0.35-15 [14.7 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libjbig2dec0 armhf 0.18-1 [56.3 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-4 [119 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libopenjp2-7 armhf 2.3.1-1 [140 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libgs9 armhf 9.52~dfsg-1 [1893 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf ghostscript armhf 9.52~dfsg-1 [96.1 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libproxy1v5 armhf 0.4.15-9 [50.4 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf glib-networking-common all 2.64.0-1 [65.0 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf glib-networking-services armhf 2.64.0-1 [16.3 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf gsettings-desktop-schemas all 3.36.0-1 [567 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf glib-networking armhf 2.64.0-1 [59.5 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf libcdt5 armhf 2.42.2-3+b2 [58.6 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libcgraph6 armhf 2.42.2-3+b2 [78.3 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf libgd3 armhf 2.2.5-5.2 [115 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libgts-0.7-5 armhf 0.7.6+darcs121130-4 [134 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf libpathplan4 armhf 2.42.2-3+b2 [61.9 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf libgvc6 armhf 2.42.2-3+b2 [585 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf libgvpr2 armhf 2.42.2-3+b2 [185 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf liblab-gamut1 armhf 2.42.2-3+b2 [221 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf libxaw7 armhf 2:1.0.13-1+b2 [163 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf graphviz armhf 2.42.2-3+b2 [499 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 28.0-1 [47.6 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 28.0-1 [24.2 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-3 [163 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-data all 2.34.1-1 [146 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-0 armhf 2.34.1-1 [43.6 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libatspi2.0-0 armhf 2.36.0-2 [60.0 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf libatk-bridge2.0-0 armhf 2.34.1-3 [54.6 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.34-0.1 [92.5 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.34-0.1 [212 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b11 [4464 B]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-tools-dev armhf 1.67.0-17 [1235 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf libboost-tools-dev armhf 1.67.0.2+b11 [4428 B]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libboost-atomic1.67.0 armhf 1.67.0-17 [227 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf libboost-atomic1.67-dev armhf 1.67.0-17 [225 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf libboost-atomic-dev armhf 1.67.0.2+b11 [4556 B]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67.0 armhf 1.67.0-17 [229 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67.0 armhf 1.67.0-17 [232 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67-dev armhf 1.67.0-17 [234 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono-dev armhf 1.67.0.2+b11 [4872 B]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libboost-container1.67.0 armhf 1.67.0-17 [251 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libboost-container1.67-dev armhf 1.67.0-17 [251 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libboost-container-dev armhf 1.67.0.2+b11 [4728 B]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libboost-context1.67.0 armhf 1.67.0-17 [228 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libboost-context1.67-dev armhf 1.67.0-17 [228 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libboost-context-dev armhf 1.67.0.2+b11 [4456 B]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf libboost-thread1.67.0 armhf 1.67.0-17 [263 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf libboost-coroutine1.67.0 armhf 1.67.0-17 [238 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libboost-coroutine1.67-dev armhf 1.67.0-17 [241 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf libboost-coroutine-dev armhf 1.67.0.2+b11 [4532 B]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.67.0 armhf 1.67.0-17 [237 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.67.0 armhf 1.67.0-17 [301 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization1.67-dev armhf 1.67.0-17 [369 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time1.67-dev armhf 1.67.0-17 [249 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf libboost-date-time-dev armhf 1.67.0.2+b11 [4248 B]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf libboost-exception1.67-dev armhf 1.67.0-17 [225 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf libboost-exception-dev armhf 1.67.0.2+b11 [4240 B]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67.0 armhf 1.67.0-17 [255 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf libboost-fiber1.67.0 armhf 1.67.0-17 [315 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf libboost-fiber1.67-dev armhf 1.67.0-17 [342 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf libboost-fiber-dev armhf 1.67.0.2+b11 [4680 B]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67-dev armhf 1.67.0-17 [231 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67-dev armhf 1.67.0-17 [261 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.67.0.2+b11 [4284 B]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67.0 armhf 1.67.0-17 [452 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph1.67.0 armhf 1.67.0-17 [304 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf libboost-test1.67.0 armhf 1.67.0-17 [423 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf libboost-test1.67-dev armhf 1.67.0-17 [498 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph1.67-dev armhf 1.67.0-17 [332 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph-dev armhf 1.67.0.2+b11 [4356 B]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.1.0+dfsg-4+rpi1 [112 kB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 440.64-1 [25.1 kB]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-3 [35.9 kB]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.1.0+dfsg-4+rpi1 [18.7 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.5-1 [377 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.2-5+rpi1 [1679 kB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi1.67.0 armhf 1.67.0-17 [253 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph-parallel1.67.0 armhf 1.67.0-17 [266 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph-parallel1.67-dev armhf 1.67.0-17 [276 kB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf libboost-graph-parallel-dev armhf 1.67.0.2+b11 [4372 B]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-3 [8860 kB]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67-dev armhf 1.67.0-17 [555 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67.0 armhf 1.67.0-17 [246 kB]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67-dev armhf 1.67.0-17 [254 kB]
Get:271 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.67.0.2+b11 [4236 B]
Get:272 http://172.17.0.1/private bullseye-staging/main armhf libboost-locale1.67.0 armhf 1.67.0-17 [427 kB]
Get:273 http://172.17.0.1/private bullseye-staging/main armhf libboost-locale1.67-dev armhf 1.67.0-17 [552 kB]
Get:274 http://172.17.0.1/private bullseye-staging/main armhf libboost-locale-dev armhf 1.67.0.2+b11 [4580 B]
Get:275 http://172.17.0.1/private bullseye-staging/main armhf libboost-log1.67.0 armhf 1.67.0-17 [543 kB]
Get:276 http://172.17.0.1/private bullseye-staging/main armhf libboost-thread1.67-dev armhf 1.67.0-17 [272 kB]
Get:277 http://172.17.0.1/private bullseye-staging/main armhf libboost-log1.67-dev armhf 1.67.0-17 [766 kB]
Get:278 http://172.17.0.1/private bullseye-staging/main armhf libboost-log-dev armhf 1.67.0.2+b11 [4456 B]
Get:279 http://172.17.0.1/private bullseye-staging/main armhf libboost-math1.67.0 armhf 1.67.0-17 [321 kB]
Get:280 http://172.17.0.1/private bullseye-staging/main armhf libboost-math1.67-dev armhf 1.67.0-17 [463 kB]
Get:281 http://172.17.0.1/private bullseye-staging/main armhf libboost-math-dev armhf 1.67.0.2+b11 [4452 B]
Get:282 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.2-5+rpi1 [168 kB]
Get:283 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:284 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:285 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 28.0-1 [199 kB]
Get:286 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-14 [159 kB]
Get:287 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.1.0+dfsg-4+rpi1 [173 kB]
Get:288 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [98.7 kB]
Get:289 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [59.7 kB]
Get:290 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.11-stable-1 [279 kB]
Get:291 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.2-5+rpi1 [185 kB]
Get:292 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.2-5+rpi1 [905 kB]
Get:293 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:294 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi1.67-dev armhf 1.67.0-17 [280 kB]
Get:295 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi-dev armhf 1.67.0.2+b11 [4336 B]
Get:296 http://172.17.0.1/private bullseye-staging/main armhf libboost-python1.67.0 armhf 1.67.0-17 [341 kB]
Get:297 http://172.17.0.1/private bullseye-staging/main armhf mpi-default-bin armhf 1.13 [4672 B]
Get:298 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi-python1.67.0 armhf 1.67.0-17 [445 kB]
Get:299 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi-python1.67-dev armhf 1.67.0-17 [231 kB]
Get:300 http://172.17.0.1/private bullseye-staging/main armhf libboost-mpi-python-dev armhf 1.67.0.2+b11 [4364 B]
Get:301 http://172.17.0.1/private bullseye-staging/main armhf libboost-numpy1.67.0 armhf 1.67.0-17 [240 kB]
Get:302 http://172.17.0.1/private bullseye-staging/main armhf libboost-numpy1.67-dev armhf 1.67.0-17 [243 kB]
Get:303 http://172.17.0.1/private bullseye-staging/main armhf libboost-numpy-dev armhf 1.67.0.2+b11 [4296 B]
Get:304 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67.0 armhf 1.67.0-17 [333 kB]
Get:305 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.67-dev armhf 1.67.0-17 [378 kB]
Get:306 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.67.0.2+b11 [4260 B]
Get:307 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.17-1+b1 [883 kB]
Get:308 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:309 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.17-1+b1 [26.5 MB]
Get:310 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.17-2 [21.0 kB]
Get:311 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.17-2 [21.0 kB]
Get:312 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.17-1+b1 [294 kB]
Get:313 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.17-2 [1224 B]
Get:314 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.17-2 [1196 B]
Get:315 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.2-1 [1367 kB]
Get:316 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.2-1 [46.0 MB]
Get:317 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-2 [20.9 kB]
Get:318 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:319 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.2-1 [533 kB]
Get:320 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-2 [1168 B]
Get:321 http://172.17.0.1/private bullseye-staging/main armhf libboost-python1.67-dev armhf 1.67.0-17 [362 kB]
Get:322 http://172.17.0.1/private bullseye-staging/main armhf libboost-python-dev armhf 1.67.0.2+b11 [4548 B]
Get:323 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.67.0 armhf 1.67.0-17 [231 kB]
Get:324 http://172.17.0.1/private bullseye-staging/main armhf libboost-random1.67-dev armhf 1.67.0-17 [231 kB]
Get:325 http://172.17.0.1/private bullseye-staging/main armhf libboost-random-dev armhf 1.67.0.2+b11 [4252 B]
Get:326 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex-dev armhf 1.67.0.2+b11 [4516 B]
Get:327 http://172.17.0.1/private bullseye-staging/main armhf libboost-serialization-dev armhf 1.67.0.2+b11 [4476 B]
Get:328 http://172.17.0.1/private bullseye-staging/main armhf libboost-signals1.67.0 armhf 1.67.0-17 [245 kB]
Get:329 http://172.17.0.1/private bullseye-staging/main armhf libboost-signals1.67-dev armhf 1.67.0-17 [256 kB]
Get:330 http://172.17.0.1/private bullseye-staging/main armhf libboost-signals-dev armhf 1.67.0.2+b11 [4316 B]
Get:331 http://172.17.0.1/private bullseye-staging/main armhf libboost-stacktrace1.67.0 armhf 1.67.0-17 [261 kB]
Get:332 http://172.17.0.1/private bullseye-staging/main armhf libboost-stacktrace1.67-dev armhf 1.67.0-17 [244 kB]
Get:333 http://172.17.0.1/private bullseye-staging/main armhf libboost-stacktrace-dev armhf 1.67.0.2+b11 [4244 B]
Get:334 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.67.0.2+b11 [4388 B]
Get:335 http://172.17.0.1/private bullseye-staging/main armhf libboost-test-dev armhf 1.67.0.2+b11 [4288 B]
Get:336 http://172.17.0.1/private bullseye-staging/main armhf libboost-thread-dev armhf 1.67.0.2+b11 [4280 B]
Get:337 http://172.17.0.1/private bullseye-staging/main armhf libboost-timer1.67.0 armhf 1.67.0-17 [230 kB]
Get:338 http://172.17.0.1/private bullseye-staging/main armhf libboost-timer1.67-dev armhf 1.67.0-17 [230 kB]
Get:339 http://172.17.0.1/private bullseye-staging/main armhf libboost-timer-dev armhf 1.67.0.2+b11 [4372 B]
Get:340 http://172.17.0.1/private bullseye-staging/main armhf libboost-type-erasure1.67.0 armhf 1.67.0-17 [237 kB]
Get:341 http://172.17.0.1/private bullseye-staging/main armhf libboost-type-erasure1.67-dev armhf 1.67.0-17 [240 kB]
Get:342 http://172.17.0.1/private bullseye-staging/main armhf libboost-type-erasure-dev armhf 1.67.0.2+b11 [4340 B]
Get:343 http://172.17.0.1/private bullseye-staging/main armhf libboost-wave1.67.0 armhf 1.67.0-17 [407 kB]
Get:344 http://172.17.0.1/private bullseye-staging/main armhf libboost-wave1.67-dev armhf 1.67.0-17 [465 kB]
Get:345 http://172.17.0.1/private bullseye-staging/main armhf libboost-wave-dev armhf 1.67.0.2+b11 [4280 B]
Get:346 http://172.17.0.1/private bullseye-staging/main armhf libboost-all-dev armhf 1.67.0.2+b11 [4592 B]
Get:347 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:348 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-2 [50.2 kB]
Get:349 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:350 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:351 http://172.17.0.1/private bullseye-staging/main armhf libfreetype-dev armhf 2.10.1-2 [482 kB]
Get:352 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.10.1-2 [63.8 kB]
Get:353 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:354 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:355 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:356 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2019.2-1 [593 kB]
Get:357 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2019.2-1 [3256 B]
Get:358 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:359 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:360 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.4.0-1 [98.7 kB]
Get:361 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:362 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.13.1-5 [170 kB]
Get:363 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.9-2 [766 kB]
Get:364 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:365 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2019.2-1 [3256 B]
Get:366 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:367 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:368 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:369 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:370 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.13.1-5 [112 kB]
Get:371 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.13.1-5 [101 kB]
Get:372 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.3-3 [57.9 kB]
Get:373 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.64.1-1 [1157 kB]
Get:374 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.64.1-1 [128 kB]
Get:375 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.64.1-1 [169 kB]
Get:376 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.34-0.1 [212 kB]
Get:377 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:378 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:379 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:380 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:381 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 3.0-1 [306 kB]
Get:382 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:383 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:384 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:385 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:386 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 3.0-1+b1 [158 kB]
Get:387 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.64.1-1 [1449 kB]
Get:388 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:389 http://172.17.0.1/private bullseye-staging/main armhf libcolord2 armhf 1.4.4-2 [121 kB]
Get:390 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.100-4+rpi1 [14.3 kB]
Get:391 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.100-4+rpi1 [37.1 kB]
Get:392 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.100-4+rpi1 [27.0 kB]
Get:393 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.100-4+rpi1 [24.7 kB]
Get:394 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.100-4+rpi1 [28.9 kB]
Get:395 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.3.1-1 [55.2 kB]
Get:396 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.18.0-1 [27.8 kB]
Get:397 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 19.3.3-1 [67.1 kB]
Get:398 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 19.3.3-1 [79.0 kB]
Get:399 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.18.0-1 [21.7 kB]
Get:400 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.9-2 [190 kB]
Get:401 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.13.1-5 [101 kB]
Get:402 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.13.1-5 [100 kB]
Get:403 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.13.1-5 [99.3 kB]
Get:404 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.13.1-5 [102 kB]
Get:405 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.13.1-5 [103 kB]
Get:406 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:407 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 19.3.3-1 [120 kB]
Get:408 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.3.1-1 [28.7 kB]
Get:409 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.13.1-5 [115 kB]
Get:410 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:411 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-1 [15.1 kB]
Get:412 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:413 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.6.0-2 [32.0 kB]
Get:414 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.6.0-2 [50.2 kB]
Get:415 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 19.3.3-1 [5676 kB]
Get:416 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 19.3.3-1 [169 kB]
Get:417 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.3.1-1 [25.7 kB]
Get:418 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.3.1-1 [105 kB]
Get:419 http://172.17.0.1/private bullseye-staging/main armhf libglx-dev armhf 1.3.1-1 [16.2 kB]
Get:420 http://172.17.0.1/private bullseye-staging/main armhf libgl-dev armhf 1.3.1-1 [100 kB]
Get:421 http://172.17.0.1/private bullseye-staging/main armhf libegl-dev armhf 1.3.1-1 [19.2 kB]
Get:422 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-2 [850 kB]
Get:423 http://172.17.0.1/private bullseye-staging/main armhf libepoxy0 armhf 1.5.4-1 [172 kB]
Get:424 http://172.17.0.1/private bullseye-staging/main armhf libgles1 armhf 1.3.1-1 [13.1 kB]
Get:425 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.3.1-1 [20.0 kB]
Get:426 http://172.17.0.1/private bullseye-staging/main armhf libgles-dev armhf 1.3.1-1 [50.2 kB]
Get:427 http://172.17.0.1/private bullseye-staging/main armhf libopengl0 armhf 1.3.1-1 [39.4 kB]
Get:428 http://172.17.0.1/private bullseye-staging/main armhf libopengl-dev armhf 1.3.1-1 [5820 B]
Get:429 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-dev armhf 1.3.1-1 [13.8 kB]
Get:430 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dev armhf 19.3.3-1 [49.2 kB]
Get:431 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa armhf 9.0.1-1 [127 kB]
Get:432 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa-dev armhf 9.0.1-1 [166 kB]
Get:433 http://172.17.0.1/private bullseye-staging/main armhf libjson-glib-1.0-common all 1.4.4-2 [52.3 kB]
Get:434 http://172.17.0.1/private bullseye-staging/main armhf libjson-glib-1.0-0 armhf 1.4.4-2 [52.7 kB]
Get:435 http://172.17.0.1/private bullseye-staging/main armhf libsoup2.4-1 armhf 2.70.0-1 [236 kB]
Get:436 http://172.17.0.1/private bullseye-staging/main armhf libsoup-gnome2.4-1 armhf 2.70.0-1 [21.2 kB]
Get:437 http://172.17.0.1/private bullseye-staging/main armhf librest-0.7-0 armhf 0.8.1-1 [27.8 kB]
Get:438 http://172.17.0.1/private bullseye-staging/main armhf libwayland-cursor0 armhf 1.18.0-1 [13.2 kB]
Get:439 http://172.17.0.1/private bullseye-staging/main armhf libwayland-egl1 armhf 1.18.0-1 [8136 B]
Get:440 http://172.17.0.1/private bullseye-staging/main armhf libxcomposite1 armhf 1:0.4.4-2 [16.1 kB]
Get:441 http://172.17.0.1/private bullseye-staging/main armhf libxcursor1 armhf 1:1.2.0-2 [34.2 kB]
Get:442 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:443 http://172.17.0.1/private bullseye-staging/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB]
Get:444 http://172.17.0.1/private bullseye-staging/main armhf xkb-data all 2.29-2 [655 kB]
Get:445 http://172.17.0.1/private bullseye-staging/main armhf libxkbcommon0 armhf 0.10.0-1 [111 kB]
Get:446 http://172.17.0.1/private bullseye-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:447 http://172.17.0.1/private bullseye-staging/main armhf libgtk-3-common all 3.24.14-1 [3722 kB]
Get:448 http://172.17.0.1/private bullseye-staging/main armhf libgtk-3-0 armhf 3.24.14-1 [2168 kB]
Get:449 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz-icu0 armhf 2.6.4-1+rpi1 [976 kB]
Get:450 http://172.17.0.1/private bullseye-staging/main armhf libkpathsea6 armhf 2019.20190605.51237-3 [159 kB]
Get:451 http://172.17.0.1/private bullseye-staging/main armhf libnotify4 armhf 0.7.9-1 [21.4 kB]
Get:452 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:453 http://172.17.0.1/private bullseye-staging/main armhf libperl-dev armhf 5.30.0-9 [899 kB]
Get:454 http://172.17.0.1/private bullseye-staging/main armhf libptexenc1 armhf 2019.20190605.51237-3 [60.0 kB]
Get:455 http://172.17.0.1/private bullseye-staging/main armhf libschroedinger-maeparser1 armhf 1.2.2-1 [72.5 kB]
Get:456 http://172.17.0.1/private bullseye-staging/main armhf libschroedinger-maeparser-dev armhf 1.2.2-1 [12.7 kB]
Get:457 http://172.17.0.1/private bullseye-staging/main armhf libsynctex2 armhf 2019.20190605.51237-3 [68.8 kB]
Get:458 http://172.17.0.1/private bullseye-staging/main armhf libteckit0 armhf 2.5.8+ds2-5 [245 kB]
Get:459 http://172.17.0.1/private bullseye-staging/main armhf libtexlua53 armhf 2019.20190605.51237-3 [99.7 kB]
Get:460 http://172.17.0.1/private bullseye-staging/main armhf libtexluajit2 armhf 2019.20190605.51237-3 [206 kB]
Get:461 http://172.17.0.1/private bullseye-staging/main armhf libwxbase3.0-0v5 armhf 3.0.4+dfsg-15 [918 kB]
Get:462 http://172.17.0.1/private bullseye-staging/main armhf wx3.0-headers all 3.0.4+dfsg-15 [1128 kB]
Get:463 http://172.17.0.1/private bullseye-staging/main armhf libwxbase3.0-dev armhf 3.0.4+dfsg-15 [140 kB]
Get:464 http://172.17.0.1/private bullseye-staging/main armhf libwxgtk3.0-gtk3-0v5 armhf 3.0.4+dfsg-15 [3643 kB]
Get:465 http://172.17.0.1/private bullseye-staging/main armhf wx-common armhf 3.0.4+dfsg-15 [174 kB]
Get:466 http://172.17.0.1/private bullseye-staging/main armhf libwxgtk3.0-gtk3-dev armhf 3.0.4+dfsg-15 [140 kB]
Get:467 http://172.17.0.1/private bullseye-staging/main armhf libxml2-dev armhf 2.9.10+dfsg-4 [660 kB]
Get:468 http://172.17.0.1/private bullseye-staging/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB]
Get:469 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:470 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
Get:471 http://172.17.0.1/private bullseye-staging/main armhf rapidjson-dev all 1.1.0+dfsg2-5 [98.7 kB]
Get:472 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:473 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
Get:474 http://172.17.0.1/private bullseye-staging/main armhf t1utils armhf 1.41-3 [52.1 kB]
Get:475 http://172.17.0.1/private bullseye-staging/main armhf texlive-binaries armhf 2019.20190605.51237-3 [5748 kB]
Get:476 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:477 http://172.17.0.1/private bullseye-staging/main armhf texlive-base all 2019.20200302-1 [21.0 MB]
Get:478 http://172.17.0.1/private bullseye-staging/main armhf texlive-latex-base all 2019.20200302-1 [1051 kB]
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Setting up libxcb-glx0:armhf (1.13.1-5) ...
Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up libpng-dev:armhf (1.6.37-2) ...
Setting up libavahi-common3:armhf (0.7-5) ...
Setting up libevent-openssl-2.1-7:armhf (2.1.11-stable-1) ...
Setting up libglib2.0-bin (2.64.1-1) ...
Setting up m4 (1.4.18-4) ...
Setting up libboost-coroutine1.67.0:armhf (1.67.0-17) ...
Setting up python3 (3.8.2-2) ...
Setting up libwxbase3.0-dev:armhf (3.0.4+dfsg-15) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/base-unicode-3.0 to provide /usr/bin/wx-config (wx-config) in auto mode
Setting up libxcb-shm0:armhf (1.13.1-5) ...
Setting up libboost-exception-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-graph1.67.0:armhf (1.67.0-17) ...
Setting up libboost-locale1.67.0:armhf (1.67.0-17) ...
Setting up python2 (2.7.17-2) ...
Setting up libboost-container-dev:armhf (1.67.0.2+b11) ...
Setting up libschroedinger-maeparser1:armhf (1.2.2-1) ...
Setting up libjson-glib-1.0-0:armhf (1.4.4-2) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up libxcb-present0:armhf (1.13.1-5) ...
Setting up libboost-type-erasure1.67.0:armhf (1.67.0-17) ...
Setting up libboost-numpy1.67.0 (1.67.0-17) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up libpython-stdlib:armhf (2.7.17-2) ...
Setting up dbus-user-session (1.12.16-2+b1) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libboost-date-time1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-chrono1.67-dev:armhf (1.67.0-17) ...
Setting up libxml2-dev:armhf (2.9.10+dfsg-4) ...
Setting up libptexenc1:armhf (2019.20190605.51237-3) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up libxcb-sync1:armhf (1.13.1-5) ...
Setting up x11proto-core-dev (2019.2-1) ...
Setting up libpython3.8:armhf (3.8.2-1) ...
Setting up shared-mime-info (1.10-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libevent-dev (2.1.11-stable-1) ...
Setting up libhwloc15:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libeigen3-dev (3.3.7-2) ...
Setting up libgssapi-krb5-2:armhf (1.17-7) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libboost-locale1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-serialization-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-context1.67-dev:armhf (1.67.0-17) ...
Setting up ucf (3.0038+nmu1) ...
Setting up libboost-date-time-dev:armhf (1.67.0.2+b11) ...
Setting up libgcc-8-dev:armhf (8.4.0-1+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up libxcb-dri2-0:armhf (1.13.1-5) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up libboost-atomic-dev:armhf (1.67.0.2+b11) ...
Setting up libgvpr2:armhf (2.42.2-3+b2) ...
Setting up x11proto-xext-dev (2019.2-1) ...
Setting up libdrm2:armhf (2.4.100-4+rpi1) ...
Setting up dwz (0.13-5) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-4) ...
Setting up libwayland-cursor0:armhf (1.18.0-1) ...
Setting up libboost-timer1.67.0:armhf (1.67.0-17) ...
Setting up procps (2:3.3.16-4) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libboost-graph1.67-dev:armhf (1.67.0-17) ...
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libx11-6:armhf (2:1.6.9-2) ...
Setting up libharfbuzz0b:armhf (2.6.4-1+rpi1) ...
Setting up libboost-filesystem1.67.0:armhf (1.67.0-17) ...
Setting up libpython2-dev:armhf (2.7.17-2) ...
Setting up libboost-coroutine1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-system1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-random1.67.0:armhf (1.67.0-17) ...
Setting up libboost-random1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-regex-dev:armhf (1.67.0.2+b11) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up libxcomposite1:armhf (1:0.4.4-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up python (2.7.17-2) ...
Setting up libboost-stacktrace1.67-dev:armhf (1.67.0-17) ...
Setting up libavahi-client3:armhf (0.7-5) ...
Setting up libmount-dev:armhf (2.34-0.1) ...
Setting up libboost-iostreams1.67-dev:armhf (1.67.0-17) ...
Setting up libllvm9:armhf (1:9.0.1-10+rpi1) ...
Setting up libboost-numpy1.67-dev (1.67.0-17) ...
Setting up libdrm-amdgpu1:armhf (2.4.100-4+rpi1) ...
Setting up libschroedinger-maeparser-dev:armhf (1.2.2-1) ...
Setting up python2.7-dev (2.7.17-1+b1) ...
Setting up python3-pkg-resources (44.0.0-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up libxcb-dri3-0:armhf (1.13.1-5) ...
Setting up libglib2.0-dev-bin (2.64.1-1) ...
Setting up libgfortran-8-dev:armhf (8.4.0-1+rpi1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libboost-graph-dev:armhf (1.67.0.2+b11) ...
Setting up libibverbs1:armhf (28.0-1) ...
Setting up libdrm-nouveau2:armhf (2.4.100-4+rpi1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libharfbuzz-icu0:armhf (2.6.4-1+rpi1) ...
Setting up gcc-8 (8.4.0-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.13.1-5) ...
Setting up python2-dev (2.7.17-2) ...
Setting up python3-setuptools (44.0.0-1) ...
Setting up libxpm4:armhf (1:3.5.12-1) ...
Setting up libboost-filesystem1.67-dev:armhf (1.67.0-17) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libboost-wave1.67.0:armhf (1.67.0-17) ...
Setting up libgbm1:armhf (19.3.3-1) ...
Setting up ibverbs-providers:armhf (28.0-1) ...
Setting up libboost-thread1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-chrono-dev:armhf (1.67.0.2+b11) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.100-4+rpi1) ...
Setting up libclang1-9 (1:9.0.1-10+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up openssh-client (1:8.2p1-4) ...
Setting up gfortran-8 (8.4.0-1+rpi1) ...
Setting up libboost-system-dev:armhf (1.67.0.2+b11) ...
Setting up libgl1-mesa-dri:armhf (19.3.3-1) ...
Setting up libx11-dev:armhf (2:1.6.9-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libboost-random-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-locale-dev:armhf (1.67.0.2+b11) ...
Setting up dconf-service (0.36.0-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libboost-context-dev:armhf (1.67.0.2+b11) ...
Setting up libatspi2.0-0:armhf (2.36.0-2) ...
Setting up libboost-iostreams-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-type-erasure1.67-dev:armhf (1.67.0-17) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up libboost-type-erasure-dev:armhf (1.67.0.2+b11) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up libfreetype-dev:armhf (2.10.1-2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython-dev:armhf (2.7.17-2) ...
Setting up libxnvctrl0:armhf (440.64-1) ...
Setting up tex-common (6.13) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up libatk-bridge2.0-0:armhf (2.34.1-3) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libxcb-shm0-dev:armhf (1.13.1-5) ...
Setting up libltdl-dev:armhf (2.4.6-14) ...
Setting up libegl-mesa0:armhf (19.3.3-1) ...
Setting up doxygen (1.8.16-2) ...
Setting up libboost-fiber1.67.0:armhf (1.67.0-17) ...
Setting up libglib2.0-dev:armhf (2.64.1-1) ...
Setting up libpython3.8-dev:armhf (3.8.2-1) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up libboost-log1.67.0 (1.67.0-17) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-3) ...
Setting up libxinerama1:armhf (2:1.1.4-2) ...
Setting up libboost-numpy-dev (1.67.0.2+b11) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libxcb-render0-dev:armhf (1.13.1-5) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up python3.8-dev (3.8.2-1) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libcups2:armhf (2.3.1-11) ...
Setting up libboost-timer1.67-dev:armhf (1.67.0-17) ...
Setting up libboost-stacktrace-dev:armhf (1.67.0.2+b11) ...
Setting up libegl1:armhf (1.3.1-1) ...
Setting up cmake (3.16.3-1) ...
Setting up libboost-fiber1.67-dev:armhf (1.67.0-17) ...
Setting up libhwloc-dev:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libboost-coroutine-dev:armhf (1.67.0.2+b11) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up libboost-timer-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-filesystem-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-thread-dev:armhf (1.67.0.2+b11) ...
Setting up libboost-fiber-dev:armhf (1.67.0.2+b11) ...
Setting up python-dev (2.7.17-2) ...
Setting up libboost-wave1.67-dev:armhf (1.67.0-17) ...
Setting up gtk-update-icon-cache (3.24.14-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxmu6:armhf (2:1.1.2-2+b3) ...
Setting up libxdamage1:armhf (1:1.1.5-1) ...
Setting up libpython3-dev:armhf (3.8.2-2) ...
Setting up libgs9:armhf (9.52~dfsg-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up dconf-gsettings-backend:armhf (0.36.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libxcursor1:armhf (1:1.2.0-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-8) ...
Setting up libboost-wave-dev:armhf (1.67.0.2+b11) ...
Setting up libxaw7:armhf (2:1.0.13-1+b2) ...
Setting up libibverbs-dev:armhf (28.0-1) ...
Setting up ghostscript (9.52~dfsg-1) ...
Setting up libboost-log1.67-dev (1.67.0-17) ...
Setting up libhwloc-plugins:armhf (2.1.0+dfsg-4+rpi1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libfreetype6-dev:armhf (2.10.1-2) ...
Setting up libnotify4:armhf (0.7.9-1) ...
Setting up python3-dev (3.8.2-2) ...
Setting up libgd3:armhf (2.2.5-5.2) ...
Setting up texlive-binaries (2019.20190605.51237-3) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libcairo-gobject2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-8) ...
Setting up libboost-python1.67-dev (1.67.0-17) ...
Setting up texlive-base (2019.20200302-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex
Setting up libboost-log-dev (1.67.0.2+b11) ...
Setting up libgtk-3-common (3.24.14-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-8) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-4) ...
Setting up gsettings-desktop-schemas (3.36.0-1) ...
Setting up libfontconfig1-dev:armhf (2.13.1-2) ...
Setting up libglx-mesa0:armhf (19.3.3-1) ...
Setting up libglx0:armhf (1.3.1-1) ...
Setting up libpmix2:armhf (3.1.5-1) ...
Setting up libopenmpi3:armhf (4.0.2-5+rpi1) ...
Setting up libboost-mpi1.67.0 (1.67.0-17) ...
Setting up libboost-python-dev (1.67.0.2+b11) ...
Setting up librsvg2-2:armhf (2.46.4-1) ...
Setting up libboost-graph-parallel1.67.0 (1.67.0-17) ...
Setting up libgl1:armhf (1.3.1-1) ...
Setting up texlive-latex-base (2019.20200302-1) ...
Setting up libgvc6 (2.42.2-3+b2) ...
Setting up librsvg2-common:armhf (2.46.4-1) ...
Setting up libglx-dev:armhf (1.3.1-1) ...
Setting up libcairo2-dev:armhf (1.16.0-4) ...
Setting up libglu1-mesa:armhf (9.0.1-1) ...
Setting up glib-networking:armhf (2.64.0-1) ...
Setting up libgl-dev:armhf (1.3.1-1) ...
Setting up openmpi-bin (4.0.2-5+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up graphviz (2.42.2-3+b2) ...
Setting up libsoup2.4-1:armhf (2.70.0-1) ...
Setting up libegl-dev:armhf (1.3.1-1) ...
Setting up mpi-default-bin (1.13) ...
Setting up libboost-graph-parallel1.67-dev (1.67.0-17) ...
Setting up adwaita-icon-theme (3.36.0-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libglu1-mesa-dev:armhf (9.0.1-1) ...
Setting up libboost-graph-parallel-dev (1.67.0.2+b11) ...
Setting up libopenmpi-dev:armhf (4.0.2-5+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up libgles-dev:armhf (1.3.1-1) ...
Setting up libsoup-gnome2.4-1:armhf (2.70.0-1) ...
Setting up librest-0.7-0:armhf (0.8.1-1) ...
Setting up libgtk-3-0:armhf (3.24.14-1) ...
Setting up libboost-mpi-python1.67.0 (1.67.0-17) ...
Setting up libglvnd-dev:armhf (1.3.1-1) ...
Setting up libwxgtk3.0-gtk3-0v5:armhf (3.0.4+dfsg-15) ...
Setting up mpi-default-dev (1.13) ...
Setting up libgl1-mesa-dev:armhf (19.3.3-1) ...
Setting up libboost-mpi1.67-dev (1.67.0-17) ...
Setting up libwxgtk3.0-gtk3-dev:armhf (3.0.4+dfsg-15) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/gtk3-unicode-3.0 to provide /usr/bin/wx-config (wx-config) in auto mode
Setting up libboost-mpi-dev (1.67.0.2+b11) ...
Setting up libboost-mpi-python1.67-dev (1.67.0-17) ...
Setting up libboost-mpi-python-dev (1.67.0.2+b11) ...
Setting up libboost-all-dev (1.67.0.2+b11) ...
Setting up debhelper (12.10) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-openbabel-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-2+rpi1) ...
Processing triggers for systemd (244.3-1+rpi1) ...
Processing triggers for tex-common (6.13) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-3) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-3+rpi1 gcc-8_8.4.0-1+rpi1 gcc-9_9.3.0-3+rpi1 libc6-dev_2.30-2+rpi1 libstdc++-9-dev_9.3.0-3+rpi1 libstdc++6_10-20200324-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
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ocl-icd-libopencl1_2.2.12-3 openmpi-bin_4.0.2-5+rpi1 openmpi-common_4.0.2-5+rpi1 openssh-client_1:8.2p1-4 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 poppler-data_0.4.9-2 procps_2:3.3.16-4 python_2.7.17-2 python-dev_2.7.17-2 python-minimal_2.7.17-2 python2_2.7.17-2 python2-dev_2.7.17-2 python2-minimal_2.7.17-2 python2.7_2.7.17-1+b1 python2.7-dev_2.7.17-1+b1 python2.7-minimal_2.7.17-1+b1 python3_3.8.2-2 python3-dev_3.8.2-2 python3-distutils_3.8.2-2 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-2 python3-pkg-resources_44.0.0-1 python3-setuptools_44.0.0-1 python3.8_3.8.2-1 python3.8-dev_3.8.2-1 python3.8-minimal_3.8.2-1 rapidjson-dev_1.1.0+dfsg2-5 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-openbabel-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 shared-mime-info_1.10-1 swig_4.0.1-5 swig4.0_4.0.1-5 systemd_244.3-1+rpi1 systemd-sysv_244.3-1+rpi1 sysvinit-utils_2.96-3 t1utils_1.41-3 tar_1.30+dfsg-7 tex-common_6.13 texlive-base_2019.20200302-1 texlive-binaries_2019.20190605.51237-3 texlive-latex-base_2019.20200302-1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 uuid-dev_2.34-0.1 wx-common_3.0.4+dfsg-15 wx3.0-headers_3.0.4+dfsg-15 x11-common_1:7.7+20 x11proto-core-dev_2019.2-1 x11proto-dev_2019.2-1 x11proto-xext-dev_2019.2-1 xdg-utils_1.1.3-2 xkb-data_2.29-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.4.0-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Jan 28 12:40:55 2020 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./openbabel_3.0.0+dfsg-3.dsc
dpkg-source: info: extracting openbabel in /<<BUILDDIR>>/openbabel-3.0.0+dfsg
dpkg-source: info: unpacking openbabel_3.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking openbabel_3.0.0+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying libinchi_static.patch
dpkg-source: info: applying remove_link_top.diff
dpkg-source: info: applying use-system-maeparser.patch
dpkg-source: info: applying 3f7a07f7e40afa3fcce3bf9014f3c3a8ceca0da5.patch
Check disc space
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Sufficient free space for build
Hack binNMU version
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Created changelog entry for binNMU version 3.0.0+dfsg-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
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SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-973c0a78-a82d-4578-9aa9-8fdaeb8d314f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package openbabel
dpkg-buildpackage: info: source version 3.0.0+dfsg-3+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with=python3 --builddirectory=/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir
dh_auto_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_autoreconf_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
debian/rules binary-arch
dh binary-arch --with=python3 --builddirectory=/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir
dh_update_autotools_config -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_autoreconf -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DRUN_SWIG=ON -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON
cd builddir && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DRUN_SWIG=ON -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:12 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Performing Test COMPILER_SUPPORTS_CXX11
-- Performing Test COMPILER_SUPPORTS_CXX11 - Success
-- Performing Test COMPILER_SUPPORTS_CXX0X
-- Performing Test COMPILER_SUPPORTS_CXX0X - Success
-- Using included inchi library.
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.10")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found wxWidgets: -L/usr/lib/arm-linux-gnueabihf;-pthread;;;-lwx_baseu-3.0;-lwx_gtk3u_core-3.0;-lwx_gtk3u_adv-3.0 (found version "3.0.4")
-- Looking for conio.h
-- Looking for conio.h - not found
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-- Checking available shared pointer...
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-- Performing Test HAVE_STD_TR1_SHARED_PTR
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-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::shared_ptr in memory
-- Found Boost: /usr/include (found version "1.67.0") found components: program_options iostreams regex
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found Boost: /usr/include (found version "1.67.0")
-- Maestro formats will be supported. Using MaeParser 1.1 at
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29")
-- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include
-- Checking for module 'cairo'
-- Found cairo, version 1.16.0
-- Found Cairo: /usr/lib/arm-linux-gnueabihf/libcairo.so
-- Cairo found. PNG output will be supported.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.16") found components: doxygen dot
-- Found Boost: /usr/include (found suitable version "1.67.0", minimum required is "1.45.0") found components: system
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found Boost: /usr/include (found version "1.67.0") found components: program_options iostreams regex
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
-- wxWidgets found => GUI will be built
-- Found PythonInterp: /usr/bin/python3 (found version "3.8.2")
-- Found SWIG: /usr/bin/swig4.0 (found version "4.0.1")
-- Found SWIG: /usr/bin/swig4.0 (found suitable version "4.0.1", minimum required is "2.0")
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.8.so (found version "3.8.2")
-- Python bindings will be compiled
-- Found Perl: /usr/bin/perl (found version "5.30.0")
-- Found PerlLibs: /usr/lib/arm-linux-gnueabihf/libperl.so.5.30 (found version "5.30.0")
-- Perl bindings will be compiled
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_AUTOGEN_VERBOSE
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
OBPERL_INSTALLDIRS
-- Build files have been written to: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir
sed -i -e "s@##DEB_HOST_MULTIARCH##@arm-linux-gnueabihf@g" \
debian/libopenbabel-dev.install \
debian/libopenbabel6.install
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make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_auto_build
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/usr/bin/cmake -S/<<BUILDDIR>>/openbabel-3.0.0+dfsg -B/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichi_bns.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichi_bns.c
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichican2.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichican2.c
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichimap4.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichimap4.c
[ 4%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/chains.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/chains.cpp
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichinorm.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichinorm.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiparm.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiparm.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiprt1.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiprt1.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/builder.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/builder.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBBuilder::LoadFragments()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBBuilder::GetFragmentCoord(std::string)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/chargemodel.cpp
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiprt2.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiprt2.c
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector<int>, std::vector<OpenBabel::vector3>, std::vector<int>)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiprt3.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiprt3.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/chargemodel.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/data.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data.cpp
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data_utilities.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data_utilities.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data_utilities.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector<double>&, double*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptor.cpp
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiqueu.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiqueu.c
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiread.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiread.c
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/elements.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/elements.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAtomHOF&}; _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator<OpenBabel::OBAtomHOF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAtomHOF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/fingerprint.cpp
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/format.cpp
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/generic.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/graphsym.cpp
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichiring.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichiring.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr1.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr1.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr2.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr2.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBAngle&}; _Tp = OpenBabel::OBAngle; _Alloc = std::allocator<OpenBabel::OBAngle>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAngle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAngleData::SetData(OpenBabel::OBAngle&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>&}; _Tp = OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>; _Alloc = std::allocator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::quad<OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'OpenBabel::OBTorsion::OBTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFConstraint&}; _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator<OpenBabel::OBFFConstraint>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFConstraint>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddIgnore(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/grid.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/grid.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, unsigned int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, unsigned int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, unsigned int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/grid.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/grid.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)':
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/griddata.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefield.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/isomorphism.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/isomorphism.cpp
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr3.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr3.c
[ 8%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/kekulize.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/locale.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/locale.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/matrix.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mcdlutil.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/molchrg.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/mol.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr4.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr4.c
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obconversion.cpp
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr5.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr5.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr6.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr6.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<OpenBabel::OBAtom*, double>&}; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichirvr7.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichirvr7.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichisort.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichisort.c
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::OBMol> OpenBabel::OBMol::Separate(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ichister.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ichister.c
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:24:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/oberror.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::PerceiveBondOrders()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:24:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::ConnectTheDots()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/mol.cpp:24:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.c.o
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obfunctions.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obiter.cpp
[ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ikey_base26.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ikey_base26.c
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obutil.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/ikey_dll.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/ikey_dll.c
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/parsmart.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/sha2.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/sha2.c
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/strutil.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/strutil.c
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/phmodel.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/phmodel.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/plugin.cpp
[ 14%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.c.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -fPIC -w -o CMakeFiles/inchi.dir/util.c.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi/util.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/phmodel.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 14%] Linking C static library libinchi.a
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -P CMakeFiles/inchi.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1
/usr/bin/ar qc libinchi.a CMakeFiles/inchi.dir/ichi_bns.c.o CMakeFiles/inchi.dir/ichi_io.c.o CMakeFiles/inchi.dir/ichican2.c.o CMakeFiles/inchi.dir/ichicano.c.o CMakeFiles/inchi.dir/ichicans.c.o CMakeFiles/inchi.dir/ichiisot.c.o CMakeFiles/inchi.dir/ichilnct.c.o CMakeFiles/inchi.dir/ichimak2.c.o CMakeFiles/inchi.dir/ichimake.c.o CMakeFiles/inchi.dir/ichimap1.c.o CMakeFiles/inchi.dir/ichimap2.c.o CMakeFiles/inchi.dir/ichimap4.c.o CMakeFiles/inchi.dir/ichinorm.c.o CMakeFiles/inchi.dir/ichiparm.c.o CMakeFiles/inchi.dir/ichiprt1.c.o CMakeFiles/inchi.dir/ichiprt2.c.o CMakeFiles/inchi.dir/ichiprt3.c.o CMakeFiles/inchi.dir/ichiqueu.c.o CMakeFiles/inchi.dir/ichiread.c.o CMakeFiles/inchi.dir/ichiring.c.o CMakeFiles/inchi.dir/ichirvr1.c.o CMakeFiles/inchi.dir/ichirvr2.c.o CMakeFiles/inchi.dir/ichirvr3.c.o CMakeFiles/inchi.dir/ichirvr4.c.o CMakeFiles/inchi.dir/ichirvr5.c.o CMakeFiles/inchi.dir/ichirvr6.c.o CMakeFiles/inchi.dir/ichirvr7.c.o CMakeFiles/inchi.dir/ichisort.c.o CMakeFiles/inchi.dir/ichister.c.o CMakeFiles/inchi.dir/ichitaut.c.o CMakeFiles/inchi.dir/ikey_base26.c.o CMakeFiles/inchi.dir/ikey_dll.c.o CMakeFiles/inchi.dir/inchi_dll.c.o CMakeFiles/inchi.dir/inchi_dll_a.c.o CMakeFiles/inchi.dir/inchi_dll_a2.c.o CMakeFiles/inchi.dir/inchi_dll_main.c.o CMakeFiles/inchi.dir/runichi.c.o CMakeFiles/inchi.dir/sha2.c.o CMakeFiles/inchi.dir/strutil.c.o CMakeFiles/inchi.dir/util.c.o
/usr/bin/ranlib libinchi.a
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 14%] Built target inchi
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/pointgroup.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/query.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/query.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/rand.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/rand.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/reactionfacade.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/residue.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/residue.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/ring.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ring.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/rotamer.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/rotor.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/spectrophore.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/spectrophore.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/rotamer.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/rotamer.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBRotamerList::Setup(OpenBabel::OBMol&, OpenBabel::OBRotorList&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/tautomer.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/tokenst.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/transform.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/transform.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/typer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/typer.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obmolecformat.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/distgeom.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/dlhandler_unix.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:27:
/usr/include/c++/9/bits/stl_algo.h: In function '_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<std::binder2nd<std::less<double> > >]':
/usr/include/c++/9/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
860 | __remove_if(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/conformersearch.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:27:
/usr/include/c++/9/bits/stl_algo.h: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)':
/usr/include/c++/9/bits/stl_algo.h:939:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
939 | return std::__remove_if(__first, __last,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
940 | __gnu_cxx::__ops::__pred_iter(__pred));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::vector3> OpenBabel::GetHeavyAtomCoords(const OpenBabel::OBMol*, const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<std::vector<OpenBabel::vector3, std::allocator<OpenBabel::vector3> >, double>&}; _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Alloc = std::allocator<std::pair<std::vector<OpenBabel::vector3>, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<std::vector<OpenBabel::vector3>, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator<OpenBabel::ConformerScore>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::ConformerScore>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::ConformerScore}; _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator<OpenBabel::ConformerScore>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:46,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/conformersearch.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<std::vector<OpenBabel::vector3, std::allocator<OpenBabel::vector3> >, double>}; _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Alloc = std::allocator<std::pair<std::vector<OpenBabel::vector3>, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<std::vector<OpenBabel::vector3>, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >'} changed in GCC 7.1
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::vector<int, std::allocator<int> >&>, std::tuple<>}; _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:46,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/conformersearch.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual double OpenBabel::OBMinimizingEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector<OpenBabel::vector3>, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual double OpenBabel::OBEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:21:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:21:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'bool OpenBabel::OBDiversePoses::AddPose(double*, double)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:27:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:21:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:27:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Distance = int; _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:21:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:27:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/conformersearch.cpp:21:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void OpenBabel::UpdateConformersFromTree(OpenBabel::OBMol*, std::vector<double>&, OpenBabel::OBDiversePoses*, bool)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/atom.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'int OpenBabel::OBConformerSearch::score_population()':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/svgpainter.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<OpenBabel::OBAtom*, double>&}; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/matrix3x3.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/spacegroup.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/transform3d.cpp
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:22:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/depict.cpp:22:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/vector3.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/align.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/stereo.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/tetranonplanar.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/tetraplanar.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/squareplanar.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/tetrahedral.cpp
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/cistrans.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/facade.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:2880:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
2880 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId);
| ^~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_function.h:1392,
from /usr/include/c++/9/bits/stl_tree.h:65,
from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/base.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:26:
/usr/include/c++/9/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:2912:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
2912 | const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef);
| ^~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_function.h:1392,
from /usr/include/c++/9/bits/stl_tree.h:65,
from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/base.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:26:
/usr/include/c++/9/backward/binders.h:108:11: note: declared here
108 | class binder1st
| ^~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/align.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/math/align.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetRefMol(const OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetTargetMol(const OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:26:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:26:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBTetrahedralStereo*> OpenBabel::TetrahedralFrom3D(OpenBabel::OBMol*, const OBStereoUnitSet&, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBCisTransStereo*> OpenBabel::CisTransFrom2D(OpenBabel::OBMol*, const OBStereoUnitSet&, const std::map<OpenBabel::OBBond*, OpenBabel::OBStereo::BondDirection>*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBAlign::GetAlignment()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/stereo/perception.cpp:26:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 21%] Linking CXX shared library ../lib/libopenbabel.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,libopenbabel.so.6 -o ../lib/libopenbabel.so.6.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/elements.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -lmaeparser -lm -ldl -lz -lboost_system
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libopenbabel.so.6.0.0 ../lib/libopenbabel.so.6 ../lib/libopenbabel.so
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eem.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/cmpdfilter.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::EEMParameter&}; _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator<OpenBabel::EEMParameter>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::EEMParameter>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::EEMCharges::_loadParameters()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/groupcontrib.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/fingerprints/finger3.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/gasteiger.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<OpenBabel::OBSmartsPattern*, double>}; _Tp = std::pair<OpenBabel::OBSmartsPattern*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBSmartsPattern*, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<OpenBabel::OBSmartsPattern*, double>}; _Tp = std::pair<OpenBabel::OBSmartsPattern*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBSmartsPattern*, double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/none.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/filters.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGaff&}; _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGaff&}; _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGaff&}; _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/mmff94.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/fingerprints/fingerecfp.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationGaff&}; _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGaff&}; _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGaff&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/inchidescriptor.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/mmff94.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/fromfile.cpp
[ 24%] Linking CXX shared module ../lib/plugin_fingerprints.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lmaeparser -lm -ldl -lz ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 24%] Built target plugin_fingerprints
make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color=
Scanning dependencies of target plugin_ops
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/addfilename.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/descriptors/smartsdescriptors.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/addinindex.cpp
[ 24%] Linking CXX shared module ../lib/plugin_descriptors.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lmaeparser -lm -ldl -lz ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 24%] Built target plugin_descriptors
[ 24%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/fromfile.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/fromfile.cpp:21:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)':
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
518 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cacaoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 24%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cacaoformat.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/addpolarh.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eqeq.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/addnonpolarh.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/canonical.cpp
[ 25%] Linking CXX shared module ../../lib/cacaoformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 25%] Built target cacaoformat
[ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/changecell.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationGhemical&}; _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationGhemical&}; _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationGhemical&}; _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationGhemical&}; _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationGhemical&}; _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/delpolarh.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/delnonpolarh.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationMMFF94&}; _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationMMFF94&}; _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >'} changed in GCC 7.1
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/gen2D.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFStrBndCalculationMMFF94&}; _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFStrBndCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFStrBndCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationMMFF94&}; _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationMMFF94&}; _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationMMFF94&}; _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationMMFF94&}; _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/fillUC.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/fillUC.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::OpFillUC::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eqeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/eqeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/forcefield.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFBondCalculationUFF&}; _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFVDWCalculationUFF&}; _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFAngleCalculationUFF&}; _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFTorsionCalculationUFF&}; _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFOOPCalculationUFF&}; _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/gen3d.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBFFElectrostaticCalculationUFF&}; _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/largest.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/loader.cpp
[ 29%] Linking CXX shared module ../lib/plugin_forcefields.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -lmaeparser -lm -ldl -lz ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color=
Scanning dependencies of target balstformat
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[ 29%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/balstformat.cpp
[ 29%] Built target plugin_forcefields
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opsplit.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 29%] Built target balstformat
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/optransform.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/partialcharges.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/readconformers.cpp
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opisomorph.cpp
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/ophighlight.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<OpenBabel::OBBase*, double>}; _Tp = std::pair<OpenBabel::OBBase*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBBase*, double> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBBase*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/deferred.h:5,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
78 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:78:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/deferred.h:5,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:24:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBBase*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/deferred.h:5,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:24:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1920 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1921 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1920:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/xout.cpp
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/conformer.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::OpSort::ProcessVec(std::vector<OpenBabel::OBBase*>&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/deferred.h:5,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/sort.cpp:24:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target thermoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 30%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/thermoformat.cpp
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color=
Scanning dependencies of target chem3dformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 30%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chem3dformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chem3dformat.cpp:309:52: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=]
309 | snprintf(type_name, sizeof(type_num), "%d",type_num);
| ^~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chem3dformat.cpp:309:51: note: directive argument in the range [-536870912, 536873461]
309 | snprintf(type_name, sizeof(type_num), "%d",type_num);
| ^~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chem3dformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 4
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Linking CXX shared module ../../lib/chem3dformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 31%] Built target chem3dformat
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opalign.cpp
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opconfab.cpp
[ 32%] Linking CXX shared module ../../lib/thermoformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target thermoformat
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
Scanning dependencies of target lpmdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lpmdformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::QEqCharges::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mdffformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdffformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lpmdformat.cpp:15:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../lib/plugin_ops.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -lmaeparser -lm -ldl -lz ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target plugin_ops
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color=
Scanning dependencies of target APIInterface
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make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/APIInterface.cpp
[ 32%] Linking CXX shared module ../../lib/APIInterface.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target APIInterface
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pointcloudformat
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make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build
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[ 32%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pointcloudformat.cpp
[ 32%] Linking CXX shared module ../../lib/lpmdformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target lpmdformat
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target orcaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/orcaformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::conditional_add(std::vector<OpenBabel::vector3>&, OpenBabel::vector3, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/pointcloudformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target pointcloudformat
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target bgfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/bgfformat.cpp
[ 32%] Linking CXX shared module ../../lib/mdffformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target mdffformat
make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/maeformat.dir/DependInfo.cmake --color=
Scanning dependencies of target maeformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/maeformat.dir/maeformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/maeformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 32%] Linking CXX shared module ../../lib/bgfformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target bgfformat
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
Scanning dependencies of target abinitformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/abinitformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/abinitformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 33%] Linking CXX shared module ../../lib/orcaformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 33%] Linking CXX shared module ../../lib/abinitformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Built target orcaformat
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xsfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xsfformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Built target abinitformat
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
Scanning dependencies of target vaspformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/vaspformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xsfformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 33%] Linking CXX shared module ../../lib/xsfformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Built target xsfformat
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target boxformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 34%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/boxformat.cpp
[ 35%] Linking CXX shared module ../../lib/maeformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/maeformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/maeformat.so CMakeFiles/maeformat.dir/maeformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::matrix3x3&}; _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator<OpenBabel::matrix3x3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 35%] Built target maeformat
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color=
Scanning dependencies of target CSRformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/CSRformat.cpp
[ 35%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 35%] Linking CXX shared module ../../lib/boxformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/string.h:495,
from /usr/include/c++/9/cstring:42,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:29,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/format.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:37,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/CSRformat.cpp:17:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'char* OpenBabel::CSRFormat::PadString(char*, int)' at /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/CSRformat.cpp:192:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/CSRformat.cpp: In member function 'char* OpenBabel::CSRFormat::PadString(char*, int)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/CSRformat.cpp:192:12: note: length computed here
192 | strncpy(output, input, strlen(input));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Built target boxformat
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target copyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/copyformat.cpp
[ 35%] Linking CXX shared module ../../lib/CSRformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Built target CSRformat
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target siestaformat
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make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/siestaformat.cpp
[ 35%] Linking CXX shared module ../../lib/copyformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Built target copyformat
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/dlpolyformat.cpp
[ 35%] Linking CXX shared module ../../lib/vaspformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Built target vaspformat
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pwscfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pwscfformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/dlpolyformat.cpp:14:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/siestaformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
/usr/include/c++/9/bits/vector.tcc: In member function 'bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 36%] Built target siestaformat
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
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[ 36%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp
[ 37%] Linking CXX shared module ../../lib/pwscfformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mopacformat.cpp
[ 37%] Linking CXX shared module ../../lib/dlpolyformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 37%] Built target dlpolyformat
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target zindoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/zindoformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBOrbital&}; _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
[ 38%] Linking CXX shared module ../../lib/zindoformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 38%] Built target zindoformat
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
Scanning dependencies of target reportformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/reportformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadGeometryOptimizationCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mopacformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 38%] Linking CXX shared module ../../lib/reportformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
Scanning dependencies of target carformat
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make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
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[ 38%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/carformat.dir/carformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/carformat.cpp
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make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
Scanning dependencies of target hinformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/hinformat.cpp
[ 39%] Linking CXX shared module ../../lib/mopacformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Built target mopacformat
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target smileyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smileyformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Eigen::Matrix<double, 3, 1, 0, 3, 1>&}; _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::QTPIECharges::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../../lib/hinformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
[ 39%] Linking CXX shared module ../../lib/carformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Built target hinformat
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gulpformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gulpformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Built target carformat
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target inchiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 40%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/inchiformat.cpp
[ 40%] Linking CXX shared module ../../lib/gulpformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 40%] Built target gulpformat
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pngformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 41%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pngformat.cpp
[ 41%] Linking CXX shared module ../../lib/smileyformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 41%] Built target smileyformat
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fchkformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 42%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fchkformat.cpp
[ 42%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/getinchi.cpp
[ 42%] Linking CXX shared module ../../lib/pngformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 42%] Built target pngformat
[ 42%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/ops/unique.cpp
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mpqcformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mpqcformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fchkformat.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fchkformat.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 43%] Linking CXX shared module ../../lib/inchiformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 43%] Linking CXX shared module ../../lib/mpqcformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 43%] Built target mpqcformat
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color=
Scanning dependencies of target outformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/outformat.dir/outformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/outformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 43%] Built target inchiformat
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color=
Scanning dependencies of target molreport
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/molreport.dir/molreport.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/molreport.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 44%] Linking CXX shared module ../../lib/molreport.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 45%] Linking CXX shared module ../../lib/outformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 45%] Built target molreport
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color=
Scanning dependencies of target crkformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 45%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/crkformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 45%] Built target outformat
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color=
Scanning dependencies of target tinkerformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/tinkerformat.cpp
[ 46%] Linking CXX shared module ../../lib/fchkformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target fchkformat
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target shelxformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/shelxformat.cpp
[ 46%] Linking CXX shared module ../../lib/shelxformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 46%] Linking CXX shared module ../../lib/tinkerformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 46%] Linking CXX shared module ../../lib/crkformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target shelxformat
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
Scanning dependencies of target MCDLformat
[ 46%] Built target tinkerformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color=
[ 46%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/MCDLformat.cpp
Scanning dependencies of target featformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/featformat.dir/featformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/featformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target crkformat
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target alchemyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/alchemyformat.cpp
[ 46%] Linking CXX shared module ../lib/plugin_charges.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lmaeparser -lm -ldl -lz ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
[ 46%] Linking CXX shared module ../../lib/featformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target featformat
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gaussformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gaussformat.cpp
[ 46%] Linking CXX shared module ../../lib/alchemyformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target alchemyformat
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acrformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/acrformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target plugin_charges
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pdbformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/MCDLformat.cpp: In member function 'std::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/MCDLformat.cpp:214:31: warning: '%s' directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=]
214 | sprintf(line,"%s%d",semis,icons[j]);
| ^~ ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/MCDLformat.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 111 bytes into a destination of size 82
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/acrformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Built target acrformat
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
Scanning dependencies of target povrayformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/povrayformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:684:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
684 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:702:70: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
702 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:739:35: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
739 | snprintf(scharge, 3, "%+d", charge);
| ^~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767]
739 | snprintf(scharge, 3, "%+d", charge);
| ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/povrayformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 46%] Linking CXX shared module ../../lib/pdbformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
Scanning dependencies of target freefracformat
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[ 46%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/freefracformat.cpp
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make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/qchemformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
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[ 46%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausscubeformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/qchemformat.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 47%] Linking CXX shared module ../../lib/gaussformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
Scanning dependencies of target mol2format
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp
[ 47%] Linking CXX shared module ../../lib/qchemformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target adfformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 48%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/adfformat.cpp
[ 49%] Linking CXX shared module ../../lib/MCDLformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
Scanning dependencies of target painterformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/painterformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausscubeformat.cpp:29:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp:720:40: warning: '%-6s' directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=]
720 | snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f",
| ^~~~
721 | atom->GetIdx(),label,
| ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 77 or more bytes (assuming 98361) into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp:760:51: warning: '%2s' directive output may be truncated writing between 2 and 32767 bytes into a region of size between 32730 and 32747 [-Wformat-truncation=]
760 | snprintf(buffer, BUFF_SIZE,"%6d %5d %5d %2s",
| ^~~
761 | bond->GetIdx()+1,bond->GetBeginAtomIdx(),bond->GetEndAtomIdx(),
762 | label);
| ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 24 and 32806 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausscubeformat.cpp:29:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 49%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/commandpainter.cpp
[ 49%] Linking CXX shared module ../../lib/painterformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 49%] Built target painterformat
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target asciiformat
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make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/asciiformat.cpp
[ 50%] Linking CXX shared module ../../lib/mol2format.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/adfformat.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 50%] Built target mol2format
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/asciipainter.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::OBT41Format::AtomData}; _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator<OpenBabel::OBT41Format::AtomData>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBT41Format::AtomData>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/gausscubeformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color=
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[ 50%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/daltonformat.cpp
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
Scanning dependencies of target nulformat
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/nulformat.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 52%] Linking CXX shared module ../../lib/asciiformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake --color=
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[ 52%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/json/pubchemjsonformat.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/MNAformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chemkinformat.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp
[ 53%] Linking CXX shared module ../../lib/MNAformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
Scanning dependencies of target svgformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 53%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/svgformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chemkinformat.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX shared module ../../lib/svgformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 53%] Built target svgformat
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gamessformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chemkinformat.cpp:20:
/usr/include/c++/9/bits/stl_map.h: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 53%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, std::string&)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp:2847:35: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
2847 | snprintf(tcount, 10, "%d", hcount);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp:23:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp:2839:35: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
2839 | snprintf(tcount, 10, "%d", i);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/smilesformat.cpp:23:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX shared module ../../lib/chemkinformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 53%] Built target chemkinformat
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rxnformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/rxnformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 54%] Linking CXX shared module ../../lib/pubchemjsonformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target pubchemjsonformat
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fhiaimsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fhiaimsformat.cpp
[ 54%] Linking CXX shared module ../../lib/rxnformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target rxnformat
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color=
Scanning dependencies of target textformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/textformat.dir/textformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/textformat.cpp
[ 54%] Linking CXX shared module ../../lib/textformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fhiaimsformat.cpp:15:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::FHIaimsFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target textformat
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color=
Scanning dependencies of target jaguarformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/jaguarformat.cpp
[ 54%] Linking CXX shared module ../../lib/fhiaimsformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target fhiaimsformat
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
Scanning dependencies of target titleformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/titleformat.cpp
[ 54%] Linking CXX shared module ../../lib/smilesformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 54%] Linking CXX shared module ../../lib/gamessformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target smilesformat
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cccformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cccformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target gamessformat
make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake --color=
Scanning dependencies of target chemdoodlejsonformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Linking CXX shared module ../../lib/titleformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1
[ 54%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/json/chemdoodlejsonformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target titleformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
Scanning dependencies of target confabreport
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp
[ 55%] Linking CXX shared module ../../lib/jaguarformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 55%] Built target jaguarformat
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gamessukformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 56%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessukformat.cpp
[ 57%] Linking CXX shared module ../../lib/cccformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 57%] Built target cccformat
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
Scanning dependencies of target turbomoleformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 57%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/turbomoleformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp:35:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp:35:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/include/eigen3/Eigen/Core:288,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/align.h:26,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp:35:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::ConfabReport::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../lib/confabreport.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 58%] Built target confabreport
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color=
Scanning dependencies of target crystal09format
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 59%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/crystal09format.cpp
[ 60%] Linking CXX shared module ../../lib/turbomoleformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 60%] Built target turbomoleformat
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gausszmatformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 60%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausszmatformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesForce(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesHessian(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::Crystal09Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausszmatformat.cpp:16:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/stl_map.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::string)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/stl_map.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadLineCartesian(OpenBabel::OBAtom*, std::vector<std::__cxx11::basic_string<char> >&, double)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gausszmatformat.cpp:16:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual bool OpenBabel::GaussianZMatrixInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadLineZmatrix(OpenBabel::OBMol&, OpenBabel::OBAtom*, std::vector<std::__cxx11::basic_string<char> >&, double, int*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 60%] Linking CXX shared module ../../lib/crystal09format.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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[ 60%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdlformat.cpp
[ 60%] Linking CXX shared module ../../lib/chemdoodlejsonformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/amberformat.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake --color=
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[ 60%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cofformat.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color=
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[ 60%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cacheformat.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
Scanning dependencies of target chemdrawct
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chemdrawct.cpp
[ 63%] Linking CXX shared module ../../lib/cacheformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 63%] Built target cacheformat
make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 64%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cifformat.cpp
[ 64%] Linking CXX shared module ../../lib/chemdrawct.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 64%] Built target chemdrawct
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cssrformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 64%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cssrformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdlformat.cpp:1695:27: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
1695 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
| ^~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdlformat.cpp:1695:22: note: directive argument in the range [-2147483648, 2147483547]
1695 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/iomanip:40,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mdlformat.cpp:27:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX shared module ../../lib/cofformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 64%] Built target cofformat
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
Scanning dependencies of target viewmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/viewmolformat.cpp
[ 65%] Linking CXX shared module ../../lib/cssrformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Built target cssrformat
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color=
Scanning dependencies of target exyzformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/exyzformat.cpp
[ 65%] Linking CXX shared module ../../lib/viewmolformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Built target viewmolformat
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fastaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fastaformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cifformat.cpp:24:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 65%] Linking CXX shared module ../../lib/fastaformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Built target fastaformat
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pdbqtformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/cifformat.cpp:24:
/usr/include/c++/9/bits/stl_map.h: In member function 'void OpenBabel::CIFData::ExtractCharges()':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 66%] Linking CXX shared module ../../lib/exyzformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 66%] Built target exyzformat
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fhformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fhformat.cpp
[ 66%] Linking CXX shared module ../../lib/mdlformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 66%] Built target mdlformat
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fastsearchformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fastsearchformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:345:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
345 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:363:60: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
363 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Linking CXX shared module ../../lib/fhformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Built target fhformat
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fingerprintformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fingerprintformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 67%] Linking CXX shared module ../../lib/cifformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector<OpenBabel::OBMol>&, OpenBabel::OBMol, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Built target cifformat
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::FastSearchFormat::ObtainTarget(OpenBabel::OBConversion*, std::vector<OpenBabel::OBMol>&, const string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
Scanning dependencies of target dmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/dmolformat.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::FastSearchFormat::ReadChemObject(OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 67%] Linking CXX shared module ../../lib/fingerprintformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Built target fingerprintformat
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fpsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/fpsformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 67%] Linking CXX shared module ../../lib/fastsearchformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Built target fastsearchformat
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
Scanning dependencies of target ghemicalformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/ghemicalformat.cpp
[ 67%] Linking CXX shared module ../../lib/dmolformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Built target dmolformat
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mmodformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mmodformat.cpp
[ 68%] Linking CXX shared module ../../lib/fpsformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Built target fpsformat
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target msmsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/msmsformat.cpp
[ 68%] Linking CXX shared module ../../lib/pdbqtformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Built target pdbqtformat
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
Scanning dependencies of target gromos96format
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/gromos96format.cpp
[ 68%] Linking CXX shared module ../../lib/ghemicalformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Built target ghemicalformat
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acesformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/acesformat.cpp
[ 68%] Linking CXX shared module ../../lib/msmsformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Built target msmsformat
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
Scanning dependencies of target lmpdatformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp
[ 68%] Linking CXX shared module ../../lib/gromos96format.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1
[ 68%] Linking CXX shared module ../../lib/mmodformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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[ 68%] Built target gromos96format
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
[ 68%] Built target mmodformat
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
Scanning dependencies of target castepformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
Scanning dependencies of target mmcifformat
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make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/castepformat.cpp
[ 69%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mmcifformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/acesformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:534:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
534 | "%-4d %4d %4d %4d %4d %4d # %11s\n",
| ^~~~
......
541 | DihedralString);
| ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:516:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
516 | "%-4d %4d %4d %4d %4d %4d # %11s\n",
| ^~~~
......
523 | DihedralString);
| ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:474:33: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
474 | "%-4d %4d %4d %4d %4d # %8s\n",
| ^~~
......
480 | AngleString);
| ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:458:33: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
458 | "%-4d %4d %4d %4d %4d # %8s\n",
| ^~~
......
464 | AngleString);
| ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:421:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
421 | "%-4d %4d %4d %4d # %5s\n",
| ^~~
......
426 | BondString);
| ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:407:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
407 | "%-4d %4d %4d %4d # %5s\n",
| ^~~
......
412 | BondString);
| ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 69%] Linking CXX shared module ../../lib/acesformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1
[ 69%] Linking CXX shared module ../../lib/castepformat.so
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 69%] Built target acesformat
[ 69%] Built target castepformat
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xyzformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build
Scanning dependencies of target moldenformat
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xyzformat.cpp
[ 70%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/moldenformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mmcifformat.cpp:19:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX shared module ../../lib/lmpdatformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:31,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mmcifformat.cpp:19:
/usr/include/c++/9/bits/stl_map.h: In member function 'virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
[ 70%] Built target lmpdatformat
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cmlformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX shared module ../../lib/xyzformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Built target xyzformat
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mpdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/mpdformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
[ 70%] Linking CXX shared module ../../lib/mmcifformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Built target mmcifformat
[ 70%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xml.cpp
[ 70%] Linking CXX shared module ../../lib/moldenformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Linking CXX shared module ../../lib/mpdformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1
[ 70%] Built target moldenformat
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target opendxformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/opendxformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Built target mpdformat
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cdxmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cdxmlformat.cpp
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pcmodelformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pcmodelformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cdxmlformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/opendxformat.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::OBOpenDXCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 70%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xml.cpp
[ 70%] Linking CXX shared module ../../lib/opendxformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Built target opendxformat
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color=
Scanning dependencies of target posformat
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make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/posformat.dir/posformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/posformat.cpp
[ 71%] Linking CXX shared module ../../lib/pcmodelformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Built target pcmodelformat
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
Scanning dependencies of target molproformat
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make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/molproformat.cpp
[ 71%] Linking CXX shared module ../../lib/cdxmlformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Built target cdxmlformat
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color=
Scanning dependencies of target groformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/groformat.dir/groformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/groformat.cpp
[ 72%] Linking CXX shared module ../../lib/posformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 72%] Built target posformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pqrformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::MolproOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 72%] Linking CXX shared module ../../lib/molproformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp:511:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
511 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp:528:66: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
528 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^~~~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 72%] Built target molproformat
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color=
Scanning dependencies of target chemdrawcdx
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/chemdrawcdx.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 73%] Linking CXX shared module ../../lib/groformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Built target groformat
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target stlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/stlformat.cpp
[ 73%] Linking CXX shared module ../../lib/cmlformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 73%] Linking CXX shared module ../../lib/pqrformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
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[ 73%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/unichemformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Built target pqrformat
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xedformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xedformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/stlformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::Triangle}; _Tp = OpenBabel::Triangle; _Alloc = std::allocator<OpenBabel::Triangle>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::Triangle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::Triangle}; _Tp = OpenBabel::Triangle; _Alloc = std::allocator<OpenBabel::Triangle>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/stlformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target stlformat
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
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[ 74%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/msiformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
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make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
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make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/yasaraformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target xedformat
make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rinchiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/rinchiformat.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/yasaraformat.cpp:572:36: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
572 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); }
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/ext/string_conversions.h:43,
from /usr/include/c++/9/bits/basic_string.h:6493,
from /usr/include/c++/9/string:55,
from /usr/include/c++/9/bits/locale_classes.h:40,
from /usr/include/c++/9/bits/ios_base.h:41,
from /usr/include/c++/9/ios:42,
from /usr/include/c++/9/ostream:38,
from /usr/include/c++/9/iostream:39,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:24,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/yasaraformat.cpp:34:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/msiformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 74%] Linking CXX shared module ../../lib/chemdrawcdx.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target msiformat
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rsmiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/rsmiformat.cpp
[ 74%] Linking CXX shared module ../../lib/yasaraformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target chemdrawcdx
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
Scanning dependencies of target PQSformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/PQSformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target yasaraformat
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
Scanning dependencies of target aoforceformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/aoforceformat.cpp
[ 75%] Linking CXX shared module ../../lib/rinchiformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Built target rinchiformat
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
Scanning dependencies of target pubchem
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/pubchem.cpp
[ 75%] Linking CXX shared module ../../lib/PQSformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Built target PQSformat
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xtcformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxtcformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xtcformat.dir/xtcformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xtcformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obmolecformat.h:36,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/aoforceformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'virtual bool OpenBabel::AoforceFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 75%] Linking CXX shared module ../../lib/rsmiformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PubChemFormat::DoElement(const string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 75%] Built target rsmiformat
[ 76%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xml.cpp
[ 76%] Linking CXX shared module ../../lib/aoforceformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color=
Scanning dependencies of target png2format
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o
[ 76%] Built target aoforceformat
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/png2format.dir/png2format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/png2format.cpp
[ 76%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/depict/cairopainter.cpp
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xmlformat.cpp
[ 76%] Linking CXX shared module ../../lib/xtcformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtcformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xtcformat.so CMakeFiles/xtcformat.dir/xtcformat.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 76%] Linking CXX shared module ../../lib/pubchem.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
[ 76%] Built target xtcformat
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cmlreactformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 77%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cmlreactformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 77%] Built target pubchem
[ 77%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xml.cpp
[ 77%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/xml.cpp
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obgrep.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:46,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cmlreactformat.cpp:15:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:46,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/xml/cmlreactformat.cpp:15:
/usr/include/c++/9/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obrms.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obrms.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obabel.dir/obabel.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obabel.cpp
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obabel.cpp:104:29: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
104 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obabel.cpp:104:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
104 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obabel.cpp:417:55: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
417 | cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- "
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obabel.cpp:418:11: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
418 | << __TIME__ << endl;
| ^~~~~~~~
[ 80%] Linking CXX executable ../bin/obtautomer
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 80%] Built target obtautomer
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
Scanning dependencies of target obthermo
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 80%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obthermo.cpp
[ 80%] Linking CXX shared module ../../lib/cmlreactformat.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1
[ 80%] Linking CXX executable ../bin/obspectrophore
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -lmaeparser -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.6.0.0 -lcairo -lc -lm -lmaeparser -lm -ldl -lz -lboost_system
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 80%] Built target obspectrophore
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
Scanning dependencies of target obconformer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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[ 80%] Built target cmlreactformat
[ 80%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obconformer.cpp
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
Scanning dependencies of target obenergy
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 81%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obenergy.cpp
[ 82%] Linking CXX executable ../bin/obabel
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Built target obabel
make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obsym.dir/DependInfo.cmake --color=
Scanning dependencies of target obsym
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obsym.dir/obsym.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obsym.cpp
[ 82%] Linking CXX executable ../bin/obthermo
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Built target obthermo
make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obfit.dir/DependInfo.cmake --color=
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make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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[ 82%] Linking CXX executable ../bin/obsym
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1
[ 82%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obfit.dir/obfit.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obfit.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Built target obsym
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
Scanning dependencies of target obprobe
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obprobe.dir/obprobe.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obprobe.cpp
[ 82%] Linking CXX executable ../bin/obenergy
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obenergy.dir/obenergy.cpp.o -o ../bin/obenergy ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
[ 82%] Linking CXX executable ../bin/obconformer
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Built target obenergy
make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obfitall.dir/DependInfo.cmake --color=
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[ 82%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obfitall.dir/obfitall.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obfitall.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 82%] Built target obconformer
make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color=
Scanning dependencies of target obgen
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 83%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obgen.dir/obgen.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obgen.cpp
[ 83%] Linking CXX executable ../bin/obprobe
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprobe.dir/obprobe.cpp.o -o ../bin/obprobe ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
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[ 83%] Built target obprobe
make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color=
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
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[ 83%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obminimize.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 83%] Built target obgen
make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake --color=
[ 83%] Linking CXX executable ../bin/obfit
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make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
[ 83%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obdistgen.dir/obdistgen.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obdistgen.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 83%] Built target obfit
make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obmm.dir/DependInfo.cmake --color=
Scanning dependencies of target obmm
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obmm.dir/obmm.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obmm.cpp
[ 84%] Linking CXX executable ../bin/obfitall
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfitall.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obfitall.dir/obfitall.cpp.o -o ../bin/obfitall ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Built target obfitall
make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color=
Scanning dependencies of target obrotate
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obrotate.cpp
[ 84%] Linking CXX executable ../bin/obminimize
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Built target obminimize
make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color=
Scanning dependencies of target obprop
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obprop.dir/obprop.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obprop.cpp
[ 84%] Linking CXX executable ../bin/obdistgen
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obdistgen.dir/obdistgen.cpp.o -o ../bin/obdistgen ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Built target obdistgen
make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color=
Scanning dependencies of target obrotamer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 84%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools/obrotamer.cpp
[ 85%] Linking CXX executable ../bin/obrotate
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 85%] Built target obrotate
make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color=
[ 85%] Linking CXX executable ../bin/obmm
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obmm.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obmm.dir/obmm.cpp.o -o ../bin/obmm ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test/CMakeFiles/roundtrip.dir/DependInfo.cmake --color=
Scanning dependencies of target roundtrip
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 85%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/roundtrip.cpp
Scanning dependencies of target obgui
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/OBGUI.cpp
[ 85%] Linking CXX executable ../bin/obprop
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 85%] Built target obprop
[ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/stdwx.cpp
[ 86%] Linking CXX executable ../bin/obrotamer
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 86%] Built target obrotamer
make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color=
Scanning dependencies of target test_inchiwrite
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 86%] Linking CXX executable ../bin/roundtrip
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
[ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/inchiwrite.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 86%] Built target roundtrip
[ 86%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/obgui.dir/optswx.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/GUI/optswx.cpp
[ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/getinchi.cpp
make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test/CMakeFiles/test_runner.dir/DependInfo.cmake --color=
[ 87%] Linking CXX executable ../bin/test_inchiwrite
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
Scanning dependencies of target test_runner
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test/test_runner.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o
[ 87%] Built target test_inchiwrite
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/aligntest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/aligntest.cpp
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/automorphismtest.cpp
make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake --color=
Scanning dependencies of target bindings_perl
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 88%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_perl_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/python3.8 -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/perl/openbabel-perl.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/aligntest.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color=
Scanning dependencies of target bindings_python
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 88%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_python_EXPORTS -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/usr/include/python3.8 -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIC -std=gnu++11 -o CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/buildertest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/canonconsistenttest.cpp
[ 89%] Linking CXX executable ../../bin/obgui
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgui.dir/OBGUI.cpp.o CMakeFiles/obgui.dir/stdwx.cpp.o CMakeFiles/obgui.dir/optswx.cpp.o -o ../../bin/obgui ../../lib/libopenbabel.so.6.0.0 -L/usr/lib/arm-linux-gnueabihf -pthread -lwx_baseu-3.0 -lwx_gtk3u_core-3.0 -lwx_gtk3u_adv-3.0 -lmaeparser -lm -ldl -lz -lboost_system
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/canonfragmenttest.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 89%] Built target obgui
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/canonstabletest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/carspacegrouptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/cifspacegrouptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/cistranstest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/cistranstest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/conversiontest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/conversiontest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/graphsymtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/graphsymtest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/gziptest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/addhtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/addhtest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/implicitHtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/implicitHtest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/lssrtest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/isomorphismtest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/multicmltest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/regressionstest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/rotortest.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/mol.h:44,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/rotortest.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/shuffletest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/shuffletest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/smilestest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/smilestest.cpp
In file included from /usr/include/string.h:495,
from /usr/include/python3.8/Python.h:30,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:177:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))' at /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:47922:16:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))':
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:47919:27: note: length computed here
47919 | size_t size = strlen(name)+1;
| ~~~~~~^~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/spectrophoretest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/squareplanartest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/stereotest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/stereotest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/stereoperceptiontest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/tautomertest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/tautomertest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/tetrahedraltest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/tetranonplanartest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/tetraplanartest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/uniqueidtest.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/maereadertest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/maereadertest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/maereadertest.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/aromatest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/aromatest.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/atom.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/atom.cpp
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/bond.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/bond.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/cansmi.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/cansmi.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/charge_mmff94.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/charge_gasteiger.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/conversion.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/conversion.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/datatest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/datatest.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/ffgaff.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/ffgaff.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/ffghemical.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/ffghemical.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/ffmmff94.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/ffmmff94.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/ffuff.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/ffuff.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/formalcharge.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/formalcharge.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/format.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/format.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/formula.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/formula.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/internalcoord.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/internalcoord.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/invalidsmarts.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/invalidsmiles.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/iterators.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/iterators.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/logp_psa.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/logp_psa.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/math.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/math.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/mol.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/mol.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/pdbreadfile.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/phmodel.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/phmodel.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/residue.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/residue.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/ringtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/ringtest.cpp
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/smartstest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/smartstest.cpp
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/smartsparse.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/smartsparse.cpp
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/smilesmatch.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/smilesmatch.cpp
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/unitcell.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/unitcell.cpp
[ 99%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/cmlreadfile.cpp
[100%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/c++ -DFORMATDIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/data -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include -I/usr/include/eigen3 -I/usr/include/maeparser -I/<<BUILDDIR>>/openbabel-3.0.0+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk3-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -fPIE -std=gnu++11 -o CMakeFiles/test_runner.dir/obtest.cpp.o -c /<<BUILDDIR>>/openbabel-3.0.0+dfsg/test/obtest.cpp
[100%] Linking CXX executable ../bin/test_runner
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_runner.dir/test_runner.cpp.o CMakeFiles/test_runner.dir/aligntest.cpp.o CMakeFiles/test_runner.dir/automorphismtest.cpp.o CMakeFiles/test_runner.dir/buildertest.cpp.o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o CMakeFiles/test_runner.dir/canonstabletest.cpp.o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cistranstest.cpp.o CMakeFiles/test_runner.dir/conversiontest.cpp.o CMakeFiles/test_runner.dir/graphsymtest.cpp.o CMakeFiles/test_runner.dir/gziptest.cpp.o CMakeFiles/test_runner.dir/addhtest.cpp.o CMakeFiles/test_runner.dir/implicitHtest.cpp.o CMakeFiles/test_runner.dir/lssrtest.cpp.o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o CMakeFiles/test_runner.dir/multicmltest.cpp.o CMakeFiles/test_runner.dir/regressionstest.cpp.o CMakeFiles/test_runner.dir/rotortest.cpp.o CMakeFiles/test_runner.dir/shuffletest.cpp.o CMakeFiles/test_runner.dir/smilestest.cpp.o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o CMakeFiles/test_runner.dir/squareplanartest.cpp.o CMakeFiles/test_runner.dir/stereotest.cpp.o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o CMakeFiles/test_runner.dir/tautomertest.cpp.o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o CMakeFiles/test_runner.dir/maereadertest.cpp.o CMakeFiles/test_runner.dir/aromatest.cpp.o CMakeFiles/test_runner.dir/atom.cpp.o CMakeFiles/test_runner.dir/bond.cpp.o CMakeFiles/test_runner.dir/cansmi.cpp.o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o CMakeFiles/test_runner.dir/conversion.cpp.o CMakeFiles/test_runner.dir/datatest.cpp.o CMakeFiles/test_runner.dir/ffgaff.cpp.o CMakeFiles/test_runner.dir/ffghemical.cpp.o CMakeFiles/test_runner.dir/ffmmff94.cpp.o CMakeFiles/test_runner.dir/ffuff.cpp.o CMakeFiles/test_runner.dir/formalcharge.cpp.o CMakeFiles/test_runner.dir/format.cpp.o CMakeFiles/test_runner.dir/formula.cpp.o CMakeFiles/test_runner.dir/internalcoord.cpp.o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o CMakeFiles/test_runner.dir/iterators.cpp.o CMakeFiles/test_runner.dir/logp_psa.cpp.o CMakeFiles/test_runner.dir/math.cpp.o CMakeFiles/test_runner.dir/mol.cpp.o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o CMakeFiles/test_runner.dir/phmodel.cpp.o CMakeFiles/test_runner.dir/residue.cpp.o CMakeFiles/test_runner.dir/ringtest.cpp.o CMakeFiles/test_runner.dir/smartstest.cpp.o CMakeFiles/test_runner.dir/smartsparse.cpp.o CMakeFiles/test_runner.dir/smilesmatch.cpp.o CMakeFiles/test_runner.dir/unitcell.cpp.o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o CMakeFiles/test_runner.dir/obtest.cpp.o -o ../bin/test_runner ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[100%] Built target test_runner
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_double_Sg____setitem____SWIG_1(std::vector<double>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_vector3_Sg____setitem____SWIG_1(std::vector<OpenBabel::vector3>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_OBMol_Sg____setitem____SWIG_1(std::vector<OpenBabel::OBMol>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1428:58: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1428 | { return _M_erase(begin() + (__position - cbegin())); }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1458:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1458 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python/openbabel/openbabel-python.cpp:3396:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::vector3}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<OpenBabel::vector3>; T = OpenBabel::vector3]':
/usr/include/c++/9/bits/vector.tcc:356:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
356 | _M_realloc_insert(begin() + __n, std::move(__v));
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {OpenBabel::OBMol}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<OpenBabel::OBMol>; T = OpenBabel::OBMol]':
/usr/include/c++/9/bits/vector.tcc:356:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
356 | _M_realloc_insert(begin() + __n, std::move(__v));
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/perl/openbabel-perl.cpp:1763:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::vector3&}; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/perl/openbabel-perl.cpp:1763:
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_new_VectorVector3__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_VectorVector3_size(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/perl/openbabel-perl.cpp:1763:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const OpenBabel::OBMol&}; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/perl/openbabel-perl.cpp:1763:
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_new_VectorOBMol__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_VectorOBMol_size(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[100%] Linking CXX shared module ../lib/_openbabel.so
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -lpython3.8 ../lib/libopenbabel.so.6.0.0 -lmaeparser -lm -ldl -lz -lboost_system
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-3.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/OpenBabel.so CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o /usr/lib/arm-linux-gnueabihf/libperl.so.5.30 ../lib/libopenbabel.so.6.0.0 -ldl -lm -lpthread -lc -lcrypt -lmaeparser -lm -ldl -lz -lboost_system
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warning: Tag 'PERL_PATH' at line 1599 of file '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 1620 of file '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/rotor.h:595: warning: unbalanced grouping commands
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetraplanar.h:58: warning: multiple use of section label 'Combinations' while adding section, (first occurrence: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/stereo/tetranonplanar.h, line 60)
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/confsearch.cpp:351: warning: documented symbol 'int DiverseConfGen' was not declared or defined.
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/data_utilities.cpp:50: warning: The following parameters of OpenBabel::extract_thermochemistry(OpenBabel::OBMol &mol, bool bVerbose, int *Nsymm, int Nrotbonds, double dbdt, double *temperature, double *DeltaHf0, double *DeltaHfT, double *DeltaGfT, double *DeltaSfT, double *S0T, double *CVT, double *CPT, std::vector< double > &Scomponents, double *ZPVE) are not documented:
parameter 'Nrotbonds'
parameter 'dbdt'
parameter 'CPT'
parameter 'ZPVE'
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:177: warning: argument 'Unnamed' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::ParseLine(const char *line)
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:180: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char *line) are not documented:
parameter 'line'
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:181: warning: argument 'dhof1' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T)
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/data.h:193: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T) are not documented:
parameter 'dhofT'
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/rotamer.h:126: warning: documented empty return type of OpenBabel::OBRotamerList::ExpandConformerList
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/text.h:82: warning: argument 'pos' from the argument list of OpenBabel::OBText::GetText has multiple @param documentation sections
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/include/openbabel/text.h:82: warning: argument 'ToInsertOnly' from the argument list of OpenBabel::OBText::GetText has multiple @param documentation sections
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=latex)
restricted \write18 enabled.
entering extended mode
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No pages of output.
Transcript written on _formulas.log.
error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
dvips: DVI file can't be opened: _formulas.dvi: No such file or directory
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make[5]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
Built target docs
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/CMakeFiles 0
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[2]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
BABEL_LIBDIR=/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib \
LD_LIBRARY_PATH=/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib \
dh_auto_test
cd builddir && make -j4 test ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir
Start 1: test_align_1
Start 2: test_align_2
Start 3: test_align_3
Start 4: test_align_4
1/192 Test #3: test_align_3 ..................... Passed 0.27 sec
Start 5: test_align_5
2/192 Test #1: test_align_1 ..................... Passed 0.35 sec
Start 6: test_automorphism_1
3/192 Test #2: test_align_2 ..................... Passed 0.35 sec
Start 7: test_automorphism_2
4/192 Test #6: test_automorphism_1 .............. Passed 4.71 sec
Start 8: test_automorphism_3
5/192 Test #7: test_automorphism_2 .............. Passed 4.73 sec
Start 9: test_automorphism_4
6/192 Test #8: test_automorphism_3 .............. Passed 0.52 sec
Start 10: test_automorphism_5
7/192 Test #9: test_automorphism_4 .............. Passed 0.52 sec
Start 11: test_automorphism_6
8/192 Test #5: test_align_5 ..................... Passed 5.55 sec
Start 12: test_automorphism_7
9/192 Test #4: test_align_4 ..................... Passed 5.88 sec
Start 13: test_automorphism_8
10/192 Test #10: test_automorphism_5 .............. Passed 0.58 sec
Start 14: test_automorphism_9
11/192 Test #11: test_automorphism_6 .............. Passed 0.65 sec
Start 15: test_automorphism_10
12/192 Test #12: test_automorphism_7 .............. Passed 0.63 sec
Start 16: test_builder_1
13/192 Test #13: test_automorphism_8 .............. Passed 0.59 sec
Start 17: test_builder_2
14/192 Test #15: test_automorphism_10 ............. Passed 0.77 sec
Start 18: test_builder_3
15/192 Test #14: test_automorphism_9 .............. Passed 0.91 sec
Start 19: test_builder_4
16/192 Test #19: test_builder_4 ................... Passed 1.26 sec
Start 20: test_builder_5
17/192 Test #18: test_builder_3 ................... Passed 1.30 sec
Start 21: test_canonconsistent_1
18/192 Test #20: test_builder_5 ................... Passed 1.35 sec
Start 22: test_canonconsistent_2
19/192 Test #22: test_canonconsistent_2 ........... Passed 0.81 sec
Start 23: test_canonconsistent_3
20/192 Test #21: test_canonconsistent_1 ........... Passed 2.64 sec
Start 24: test_canonfragment_1
21/192 Test #24: test_canonfragment_1 ............. Passed 0.59 sec
Start 25: test_canonstable_1
22/192 Test #23: test_canonconsistent_3 ........... Passed 1.09 sec
Start 26: test_carspacegroup_1
23/192 Test #26: test_carspacegroup_1 ............. Passed 0.75 sec
Start 27: test_carspacegroup_2
24/192 Test #27: test_carspacegroup_2 ............. Passed 3.69 sec
Start 28: test_carspacegroup_3
25/192 Test #28: test_carspacegroup_3 ............. Passed 3.73 sec
Start 29: test_carspacegroup_4
26/192 Test #29: test_carspacegroup_4 ............. Passed 3.59 sec
Start 30: test_cifspacegroup_1
27/192 Test #30: test_cifspacegroup_1 ............. Passed 3.23 sec
Start 31: test_cifspacegroup_2
28/192 Test #31: test_cifspacegroup_2 ............. Passed 4.08 sec
Start 32: test_cifspacegroup_3
29/192 Test #32: test_cifspacegroup_3 ............. Passed 0.05 sec
Start 33: test_cifspacegroup_4
30/192 Test #33: test_cifspacegroup_4 ............. Passed 4.05 sec
Start 34: test_cifspacegroup_5
31/192 Test #34: test_cifspacegroup_5 ............. Passed 3.93 sec
Start 35: test_cifspacegroup_6
32/192 Test #35: test_cifspacegroup_6 ............. Passed 4.75 sec
Start 36: test_cifspacegroup_7
33/192 Test #36: test_cifspacegroup_7 ............. Passed 4.18 sec
Start 37: test_cifspacegroup_8
34/192 Test #37: test_cifspacegroup_8 ............. Passed 4.29 sec
Start 38: test_cifspacegroup_9
35/192 Test #17: test_builder_2 ................... Passed 49.20 sec
Start 39: test_cifspacegroup_10
36/192 Test #38: test_cifspacegroup_9 ............. Passed 4.52 sec
Start 40: test_cifspacegroup_11
37/192 Test #39: test_cifspacegroup_10 ............ Passed 4.69 sec
Start 41: test_cifspacegroup_12
38/192 Test #40: test_cifspacegroup_11 ............ Passed 4.10 sec
Start 42: test_cistrans_1
39/192 Test #42: test_cistrans_1 .................. Passed 0.11 sec
Start 43: test_cistrans_2
40/192 Test #43: test_cistrans_2 .................. Passed 0.11 sec
Start 44: test_cistrans_3
41/192 Test #44: test_cistrans_3 .................. Passed 0.10 sec
Start 45: test_cistrans_4
42/192 Test #45: test_cistrans_4 .................. Passed 0.08 sec
Start 46: test_cistrans_5
43/192 Test #46: test_cistrans_5 .................. Passed 0.06 sec
Start 47: test_cistrans_6
44/192 Test #47: test_cistrans_6 .................. Passed 0.59 sec
Start 48: test_cistrans_7
45/192 Test #48: test_cistrans_7 .................. Passed 0.46 sec
Start 49: test_cistrans_8
46/192 Test #49: test_cistrans_8 .................. Passed 0.94 sec
Start 50: test_cistrans_9
47/192 Test #50: test_cistrans_9 .................. Passed 0.53 sec
Start 51: test_conversion_1
48/192 Test #51: test_conversion_1 ................ Passed 0.48 sec
Start 52: test_graphsym_1
49/192 Test #41: test_cifspacegroup_12 ............ Passed 3.82 sec
Start 53: test_graphsym_2
50/192 Test #52: test_graphsym_1 .................. Passed 0.68 sec
Start 54: test_graphsym_3
51/192 Test #53: test_graphsym_2 .................. Passed 0.65 sec
Start 55: test_graphsym_4
52/192 Test #54: test_graphsym_3 .................. Passed 0.66 sec
Start 56: test_graphsym_5
53/192 Test #55: test_graphsym_4 .................. Passed 0.81 sec
Start 57: test_gzip_1
54/192 Test #56: test_graphsym_5 .................. Passed 0.73 sec
Start 58: test_addh_1
55/192 Test #57: test_gzip_1 ...................... Passed 2.84 sec
Start 59: test_implicitH_1
56/192 Test #59: test_implicitH_1 ................. Passed 1.14 sec
Start 60: test_lssr_1
57/192 Test #60: test_lssr_1 ...................... Passed 1.15 sec
Start 61: test_lssr_2
58/192 Test #61: test_lssr_2 ...................... Passed 21.57 sec
Start 62: test_lssr_3
59/192 Test #62: test_lssr_3 ...................... Passed 7.23 sec
Start 63: test_lssr_4
60/192 Test #25: test_canonstable_1 ............... Passed 91.74 sec
Start 64: test_lssr_5
61/192 Test #64: test_lssr_5 ...................... Passed 0.64 sec
Start 65: test_isomorphism_1
62/192 Test #65: test_isomorphism_1 ............... Passed 0.54 sec
Start 66: test_isomorphism_2
63/192 Test #66: test_isomorphism_2 ............... Passed 0.48 sec
Start 67: test_isomorphism_3
64/192 Test #67: test_isomorphism_3 ............... Passed 0.74 sec
Start 68: test_isomorphism_4
65/192 Test #68: test_isomorphism_4 ............... Passed 0.68 sec
Start 69: test_isomorphism_5
66/192 Test #69: test_isomorphism_5 ............... Passed 0.74 sec
Start 70: test_isomorphism_6
67/192 Test #70: test_isomorphism_6 ............... Passed 0.50 sec
Start 71: test_isomorphism_7
68/192 Test #71: test_isomorphism_7 ............... Passed 0.56 sec
Start 72: test_isomorphism_8
69/192 Test #63: test_lssr_4 ...................... Passed 8.90 sec
Start 73: test_isomorphism_9
70/192 Test #72: test_isomorphism_8 ............... Passed 0.50 sec
Start 74: test_multicml_1
71/192 Test #73: test_isomorphism_9 ............... Passed 0.54 sec
Start 75: test_regressions_1
72/192 Test #74: test_multicml_1 .................. Passed 0.61 sec
Start 76: test_regressions_221
73/192 Test #58: test_addh_1 ...................... Passed 187.84 sec
Start 77: test_regressions_222
74/192 Test #77: test_regressions_222 ............. Passed 0.65 sec
Start 78: test_regressions_223
75/192 Test #78: test_regressions_223 ............. Passed 0.59 sec
Start 79: test_regressions_224
76/192 Test #79: test_regressions_224 ............. Passed 0.89 sec
Start 80: test_regressions_225
77/192 Test #80: test_regressions_225 ............. Passed 0.92 sec
Start 81: test_regressions_226
78/192 Test #81: test_regressions_226 ............. Passed 0.79 sec
Start 82: test_regressions_227
79/192 Test #82: test_regressions_227 ............. Passed 0.77 sec
Start 83: test_regressions_228
80/192 Test #83: test_regressions_228 ............. Passed 0.84 sec
Start 84: test_regressions_240
81/192 Test #84: test_regressions_240 ............. Passed 0.61 sec
Start 85: test_regressions_241
82/192 Test #85: test_regressions_241 ............. Passed 0.47 sec
Start 86: test_regressions_242
83/192 Test #86: test_regressions_242 ............. Passed 0.66 sec
Start 87: test_rotor_1
84/192 Test #87: test_rotor_1 ..................... Passed 0.05 sec
Start 88: test_rotor_2
85/192 Test #88: test_rotor_2 ..................... Passed 0.49 sec
Start 89: test_rotor_3
86/192 Test #89: test_rotor_3 ..................... Passed 0.49 sec
Start 90: test_rotor_4
87/192 Test #90: test_rotor_4 ..................... Passed 0.56 sec
Start 91: test_shuffle_1
88/192 Test #91: test_shuffle_1 ................... Passed 3.27 sec
Start 92: test_shuffle_2
89/192 Test #92: test_shuffle_2 ................... Passed 4.41 sec
Start 93: test_shuffle_3
90/192 Test #93: test_shuffle_3 ................... Passed 2.48 sec
Start 94: test_shuffle_4
91/192 Test #94: test_shuffle_4 ................... Passed 1.38 sec
Start 95: test_shuffle_5
92/192 Test #95: test_shuffle_5 ................... Passed 1.94 sec
Start 96: test_smiles_1
93/192 Test #96: test_smiles_1 .................... Passed 0.94 sec
Start 97: test_smiles_2
94/192 Test #97: test_smiles_2 .................... Passed 0.94 sec
Start 98: test_smiles_3
95/192 Test #98: test_smiles_3 .................... Passed 1.10 sec
Start 99: test_spectrophore_1
96/192 Test #99: test_spectrophore_1 .............. Passed 5.72 sec
Start 100: test_spectrophore_2
97/192 Test #100: test_spectrophore_2 .............. Passed 0.41 sec
Start 101: test_spectrophore_3
98/192 Test #101: test_spectrophore_3 .............. Passed 0.35 sec
Start 102: test_spectrophore_4
99/192 Test #102: test_spectrophore_4 .............. Passed 0.71 sec
Start 103: test_spectrophore_5
100/192 Test #103: test_spectrophore_5 .............. Passed 0.54 sec
Start 104: test_squareplanar_1
101/192 Test #104: test_squareplanar_1 .............. Passed 0.10 sec
Start 105: test_squareplanar_2
102/192 Test #105: test_squareplanar_2 .............. Passed 0.10 sec
Start 106: test_squareplanar_3
103/192 Test #106: test_squareplanar_3 .............. Passed 0.10 sec
Start 107: test_squareplanar_4
104/192 Test #107: test_squareplanar_4 .............. Passed 0.10 sec
Start 108: test_squareplanar_5
105/192 Test #108: test_squareplanar_5 .............. Passed 0.10 sec
Start 109: test_stereo_1
106/192 Test #109: test_stereo_1 .................... Passed 0.10 sec
Start 110: test_stereo_2
107/192 Test #110: test_stereo_2 .................... Passed 0.10 sec
Start 111: test_stereo_3
108/192 Test #111: test_stereo_3 .................... Passed 0.10 sec
Start 112: test_stereo_4
109/192 Test #112: test_stereo_4 .................... Passed 0.10 sec
Start 113: test_stereo_5
110/192 Test #113: test_stereo_5 .................... Passed 0.09 sec
Start 114: test_stereo_6
111/192 Test #114: test_stereo_6 .................... Passed 2.84 sec
Start 115: test_stereoperception_1
112/192 Test #115: test_stereoperception_1 .......... Passed 0.58 sec
Start 116: test_stereoperception_2
113/192 Test #116: test_stereoperception_2 .......... Passed 0.49 sec
Start 117: test_stereoperception_3
114/192 Test #117: test_stereoperception_3 .......... Passed 0.48 sec
Start 118: test_stereoperception_4
115/192 Test #118: test_stereoperception_4 .......... Passed 0.47 sec
Start 119: test_tautomer_1
116/192 Test #119: test_tautomer_1 .................. Passed 0.46 sec
Start 120: test_tautomer_2
117/192 Test #120: test_tautomer_2 .................. Passed 0.52 sec
Start 121: test_tetrahedral_1
118/192 Test #121: test_tetrahedral_1 ............... Passed 0.05 sec
Start 122: test_tetrahedral_2
119/192 Test #122: test_tetrahedral_2 ............... Passed 0.05 sec
Start 123: test_tetrahedral_3
120/192 Test #123: test_tetrahedral_3 ............... Passed 0.05 sec
Start 124: test_tetrahedral_4
121/192 Test #124: test_tetrahedral_4 ............... Passed 0.05 sec
Start 125: test_tetrahedral_5
122/192 Test #125: test_tetrahedral_5 ............... Passed 0.05 sec
Start 126: test_tetranonplanar_1
123/192 Test #126: test_tetranonplanar_1 ............ Passed 0.05 sec
Start 127: test_tetraplanar_1
124/192 Test #127: test_tetraplanar_1 ............... Passed 0.05 sec
Start 128: test_uniqueid_1
125/192 Test #128: test_uniqueid_1 .................. Passed 0.05 sec
Start 129: test_uniqueid_2
126/192 Test #129: test_uniqueid_2 .................. Passed 0.05 sec
Start 130: test_maereader_1
127/192 Test #130: test_maereader_1 ................. Passed 0.53 sec
Start 131: test_maereader_2
128/192 Test #131: test_maereader_2 ................. Passed 0.52 sec
Start 132: test_aromatest_1
129/192 Test #132: test_aromatest_1 ................. Passed 0.54 sec
Start 133: test_atom_1
130/192 Test #133: test_atom_1 ...................... Passed 0.05 sec
Start 134: test_atom_2
131/192 Test #134: test_atom_2 ...................... Passed 0.05 sec
Start 135: test_atom_3
132/192 Test #135: test_atom_3 ...................... Passed 0.05 sec
Start 136: test_atom_4
133/192 Test #136: test_atom_4 ...................... Passed 0.05 sec
Start 137: test_bond_1
134/192 Test #137: test_bond_1 ...................... Passed 0.05 sec
Start 138: test_cansmi_1
135/192 Test #138: test_cansmi_1 .................... Passed 4.68 sec
Start 139: test_charge_mmff94_1
136/192 Test #139: test_charge_mmff94_1 ............. Passed 1.92 sec
Start 140: test_charge_gasteiger_1
137/192 Test #140: test_charge_gasteiger_1 .......... Passed 1.21 sec
Start 141: test_datatest_1
138/192 Test #141: test_datatest_1 .................. Passed 0.05 sec
Start 142: test_ffgaff_1
139/192 Test #142: test_ffgaff_1 .................... Passed 10.95 sec
Start 143: test_ffghemical_1
140/192 Test #143: test_ffghemical_1 ................ Passed 11.57 sec
Start 144: test_ffmmff94_1
141/192 Test #16: test_builder_1 ................... Passed 364.81 sec
Start 145: test_ffmmff94_2
142/192 Test #145: test_ffmmff94_2 .................. Passed 18.29 sec
Start 146: test_ffmmff94_3
143/192 Test #76: test_regressions_221 .............Child aborted***Exception: 341.01 sec
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Start 147: test_ffmmff94_4
144/192 Test #75: test_regressions_1 ...............Child aborted***Exception: 342.62 sec
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Start 148: test_ffmmff94_5
145/192 Test #144: test_ffmmff94_1 .................. Passed 128.11 sec
Start 149: test_ffmmff94_6
146/192 Test #146: test_ffmmff94_3 .................. Passed 65.14 sec
Start 150: test_ffuff_1
147/192 Test #149: test_ffmmff94_6 .................. Passed 0.19 sec
Start 151: test_formalcharge_1
148/192 Test #151: test_formalcharge_1 .............. Passed 0.84 sec
Start 152: test_format_1
149/192 Test #152: test_format_1 .................... Passed 0.57 sec
Start 153: test_formula_1
150/192 Test #153: test_formula_1 ................... Passed 1.18 sec
Start 154: test_internalcoord_1
151/192 Test #154: test_internalcoord_1 ............. Passed 0.10 sec
Start 155: test_invalidsmarts_1
152/192 Test #155: test_invalidsmarts_1 ............. Passed 0.23 sec
Start 156: test_invalidsmiles_1
153/192 Test #156: test_invalidsmiles_1 ............. Passed 0.11 sec
Start 157: test_iterators_1
154/192 Test #157: test_iterators_1 ................. Passed 0.75 sec
Start 158: test_logp_psa_1
155/192 Test #158: test_logp_psa_1 .................. Passed 0.62 sec
Start 159: test_math_1
156/192 Test #159: test_math_1 ...................... Passed 0.59 sec
Start 160: test_math_2
157/192 Test #160: test_math_2 ...................... Passed 0.27 sec
Start 161: test_math_3
158/192 Test #161: test_math_3 ...................... Passed 0.06 sec
Start 162: test_math_4
159/192 Test #162: test_math_4 ...................... Passed 0.27 sec
Start 163: test_mol_1
160/192 Test #163: test_mol_1 ....................... Passed 0.62 sec
Start 164: test_pdbreadfile_1
161/192 Test #164: test_pdbreadfile_1 ............... Passed 0.56 sec
Start 165: test_pdbreadfile_2
162/192 Test #165: test_pdbreadfile_2 ............... Passed 0.60 sec
Start 166: test_pdbreadfile_3
163/192 Test #150: test_ffuff_1 ..................... Passed 8.02 sec
Start 167: test_pdbreadfile_4
164/192 Test #166: test_pdbreadfile_3 ............... Passed 0.65 sec
Start 168: test_phmodel_1
165/192 Test #167: test_pdbreadfile_4 ............... Passed 0.69 sec
Start 169: test_residue_1
166/192 Test #168: test_phmodel_1 ................... Passed 0.62 sec
Start 170: test_ringtest_1
167/192 Test #169: test_residue_1 ................... Passed 0.64 sec
Start 171: test_smartstest_1
168/192 Test #170: test_ringtest_1 .................. Passed 0.94 sec
Start 172: test_smartsparse_1
169/192 Test #172: test_smartsparse_1 ............... Passed 0.13 sec
Start 173: test_smilesmatch_1
170/192 Test #171: test_smartstest_1 ................ Passed 1.54 sec
Start 174: test_unitcell_1
171/192 Test #174: test_unitcell_1 .................. Passed 0.06 sec
Start 175: test_cmlreadfile_1
172/192 Test #175: test_cmlreadfile_1 ............... Passed 0.70 sec
Start 176: inchiSamples.sdf_Test
173/192 Test #176: inchiSamples.sdf_Test ............ Passed 1.69 sec
Start 177: inchiSamplesTechMan.sdf_Test
174/192 Test #173: test_smilesmatch_1 ............... Passed 3.61 sec
Start 178: inchiSteffen_PubChem.smi_Test
175/192 Test #177: inchiSamplesTechMan.sdf_Test ..... Passed 1.00 sec
Start 179: pytest_babel
176/192 Test #147: test_ffmmff94_4 .................. Passed 33.25 sec
Start 180: pytest_sym
177/192 Test #179: pytest_babel ..................... Passed 59.53 sec
Start 181: pytest_smartssym
178/192 Test #181: pytest_smartssym ................. Passed 30.61 sec
Start 182: pytest_fastsearch
179/192 Test #182: pytest_fastsearch ................ Passed 2.58 sec
Start 183: pytest_unique
180/192 Test #183: pytest_unique .................... Passed 6.68 sec
Start 184: pytest_kekule
181/192 Test #184: pytest_kekule .................... Passed 13.90 sec
Start 185: pytest_pdbformat
182/192 Test #185: pytest_pdbformat ................. Passed 1.39 sec
Start 186: pytest_roundtrip
183/192 Test #148: test_ffmmff94_5 .................. Passed 191.68 sec
Start 187: pytest_RInChI
184/192 Test #187: pytest_RInChI .................... Passed 23.45 sec
Start 188: pybindtest_bindings
185/192 Test #188: pybindtest_bindings ..............***Failed 290.31 sec
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python:/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib
...==============================
*** Open Babel Warning in WriteMolecule
No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
....==============================
*** Open Babel Warning in ParseSmiles
Too many greater-than signs in SMILES string
==============================
*** Open Babel Warning in ParseSmiles
Too many greater-than signs in SMILES string
==============================
*** Open Babel Warning in ParseSmiles
Too many greater-than signs in SMILES string
==============================
*** Open Babel Warning in ParseSmiles
Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
==============================
*** Open Babel Warning in ParseSmiles
Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
==============================
*** Open Babel Warning in ParseSmiles
Invalid reaction SMILES string: only a single '>' sign found (two required to be valid).
..==============================
*** Open Babel Warning in IsValid
The molecule is not marked as a reaction. Use SetIsReaction().
==============================
*** Open Babel Warning in IsValid
Reaction roles should be in the range 0 to 3 inclusive.
==============================
*** Open Babel Warning in IsValid
Reaction component Ids should all be non-zero positive integers.
==============================
*** Open Babel Warning in IsValid
The molecule contains an atom that is missing a reaction component Id. Use SetComponentId().
==============================
*** Open Babel Warning in IsValid
A reaction component Id has been stored using a data type that is not an OBPairInteger.
==============================
*** Open Babel Warning in IsValid
The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value.
==============================
*** Open Babel Warning in IsValid
The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role.
...........==============================
*** Open Babel Warning in ReadMolecule
WARNING: Problem interpreting the valence field of an atom
The valence field specifies a valence 0 that is
less than the observed explicit valence 1.
.==============================
*** Open Babel Warning in WriteMolecule
No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D.
.........==============================
*** Open Babel Error in ParseComplex
SMILES string contains a character '#' which is invalid
==============================
*** Open Babel Error in ParseComplex
Element number must be <= 255)
==============================
*** Open Babel Error in ParseComplex
SMILES string contains a character '#' which is invalid
..==============================
*** Open Babel Warning in ParseRingBond
Warning: Tetrahedral stereo specified for atom with more than 4 connections.
==============================
*** Open Babel Warning in ParseSmiles
Failed to kekulize aromatic SMILES
..terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
CMake Error at pybindtest_bindings.cmake:20 (MESSAGE):
Child aborted
Start 189: pybindtest__pybel
186/192 Test #189: pybindtest__pybel ................ Passed 24.85 sec
Start 190: pybindtest_example
187/192 Test #190: pybindtest_example ............... Passed 1.65 sec
Start 191: pybindtest_cdjsonformat
188/192 Test #191: pybindtest_cdjsonformat .......... Passed 1.98 sec
Start 192: pybindtest_pcjsonformat
189/192 Test #192: pybindtest_pcjsonformat .......... Passed 3.25 sec
190/192 Test #178: inchiSteffen_PubChem.smi_Test ....***Timeout 1500.17 sec
==============================
*** Open Babel Warning in InChI code
#6 :Accepted unusual valence(s): C(3);
==============================
*** Open Babel Warning in InChI code
#8 :Salt was disconnected;
==============================
*** Open Babel Warning in InChI code
#30 :Salt was disconnected;
191/192 Test #180: pytest_sym .......................***Timeout 1500.10 sec
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python:/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib
192/192 Test #186: pytest_roundtrip .................***Timeout 1500.15 sec
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/scripts/python:/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/lib
97% tests passed, 6 tests failed out of 192
Total Test time (real) = 2084.23 sec
The following tests FAILED:
75 - test_regressions_1 (Child aborted)
76 - test_regressions_221 (Child aborted)
178 - inchiSteffen_PubChem.smi_Test (Timeout)
180 - pytest_sym (Timeout)
186 - pytest_roundtrip (Timeout)
188 - pybindtest_bindings (Failed)
Errors while running CTest
make[2]: *** [Makefile:109: test] Error 8
make[2]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
dh_auto_test: error: cd builddir && make -j4 test ARGS\+=-j4 returned exit code 2
make[1]: [debian/rules:60: override_dh_auto_test] Error 25 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_prep -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_auto_install -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
cd builddir && make -j4 install DESTDIR=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
/usr/bin/cmake -S/<<BUILDDIR>>/openbabel-3.0.0+dfsg -B/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/CMakeFiles /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats/libinchi /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/libinchi/CMakeFiles/inchi.dir/build'.
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[ 7%] Built target inchi
[ 21%] Built target openbabel
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --color=
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[ 24%] Built target plugin_forcefields
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make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
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[ 26%] Built target cacaoformat
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend
[ 26%] Built target thermoformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
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[ 31%] Built target plugin_ops
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cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
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[ 31%] Built target balstformat
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build
[ 32%] Built target chem3dformat
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend
[ 32%] Built target lpmdformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mdffformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/APIInterface.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build
[ 32%] Built target mdffformat
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pointcloudformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/orcaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target APIInterface
make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/depend
[ 32%] Built target pointcloudformat
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
[ 32%] Built target orcaformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/maeformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/bgfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/abinitformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 32%] Built target bgfformat
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xsfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/maeformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 33%] Built target abinitformat
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
[ 33%] Built target xsfformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color=
[ 34%] Built target maeformat
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/vaspformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
[ 34%] Built target vaspformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/boxformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/CSRformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/copyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 35%] Built target boxformat
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build
[ 35%] Built target CSRformat
[ 35%] Built target copyformat
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/siestaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build
[ 36%] Built target siestaformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/dlpolyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pwscfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nwchemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 36%] Built target dlpolyformat
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
[ 37%] Built target nwchemformat
[ 37%] Built target pwscfformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mopacformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/zindoformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
[ 37%] Built target mopacformat
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/carformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/reportformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 38%] Built target zindoformat
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
[ 38%] Built target carformat
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
[ 38%] Built target reportformat
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/hinformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/smileyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gulpformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 39%] Built target hinformat
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color=
[ 39%] Built target smileyformat
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build
[ 39%] Built target gulpformat
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pngformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/inchiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fchkformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 40%] Built target pngformat
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mpqcformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 42%] Built target inchiformat
[ 42%] Built target fchkformat
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color=
[ 43%] Built target mpqcformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/outformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/crkformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/molreport.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 44%] Built target crkformat
[ 44%] Built target outformat
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color=
[ 45%] Built target molreport
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/tinkerformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build
[ 46%] Built target tinkerformat
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/shelxformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/MCDLformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/featformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 47%] Built target shelxformat
[ 47%] Built target MCDLformat
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/alchemyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 47%] Built target featformat
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
[ 47%] Built target alchemyformat
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/acrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gaussformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 48%] Built target acrformat
[ 48%] Built target gaussformat
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/povrayformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 48%] Built target pdbformat
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/qchemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 48%] Built target povrayformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/freefracformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gausscubeformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 48%] Built target qchemformat
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color=
[ 48%] Built target freefracformat
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
[ 48%] Built target gausscubeformat
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mol2format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/adfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/painterformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/asciiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 49%] Built target mol2format
make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color=
[ 50%] Built target adfformat
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
[ 50%] Built target painterformat
make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake --color=
[ 51%] Built target asciiformat
make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/daltonformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nulformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pubchemjsonformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/MNAformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 52%] Built target daltonformat
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
[ 53%] Built target nulformat
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
[ 53%] Built target pubchemjsonformat
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 53%] Built target MNAformat
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemkinformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/smilesformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/svgformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 53%] Built target chemkinformat
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
[ 53%] Built target smilesformat
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
[ 53%] Built target svgformat
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color=
[ 53%] Built target gamessformat
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rxnformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fhiaimsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/textformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/jaguarformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 54%] Built target rxnformat
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
[ 54%] Built target fhiaimsformat
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color=
[ 54%] Built target textformat
make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake --color=
[ 55%] Built target jaguarformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemdoodlejsonformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/titleformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cccformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/confabreport.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 55%] Built target chemdoodlejsonformat
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
[ 55%] Built target titleformat
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
[ 56%] Built target cccformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend
[ 57%] Built target confabreport
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessukformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/turbomoleformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/crystal09format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gausszmatformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 58%] Built target gamessukformat
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color=
[ 59%] Built target turbomoleformat
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
[ 60%] Built target gausszmatformat
[ 60%] Built target crystal09format
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend
make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemtoolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build
make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mdlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/amberformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cofformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 60%] Built target chemtoolformat
make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color=
[ 60%] Built target mdlformat
make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
[ 60%] Built target cofformat
[ 61%] Built target amberformat
make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cacheformat.dir/build'.
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make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cifformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 62%] Built target cacheformat
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
[ 63%] Built target chemdrawct
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend
[ 64%] Built target cssrformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color=
[ 64%] Built target cifformat
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/viewmolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/exyzformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fastaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbqtformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 65%] Built target viewmolformat
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
[ 66%] Built target exyzformat
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
[ 66%] Built target pdbqtformat
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend
[ 66%] Built target fastaformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fhformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fastsearchformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fingerprintformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
[ 67%] Built target fhformat
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend
[ 67%] Built target fastsearchformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/dmolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend
[ 67%] Built target fingerprintformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
[ 67%] Built target dmolformat
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fpsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/ghemicalformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mmodformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build
[ 68%] Built target fpsformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/msmsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
[ 68%] Built target ghemicalformat
[ 68%] Built target mmodformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
[ 68%] Built target msmsformat
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gromos96format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/lmpdatformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/acesformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build
[ 68%] Built target gromos96format
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend
[ 68%] Built target acesformat
[ 68%] Built target lmpdatformat
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/castepformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 68%] Built target castepformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mmcifformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/moldenformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xyzformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 69%] Built target moldenformat
[ 69%] Built target mmcifformat
[ 70%] Built target xyzformat
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mpdformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/opendxformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 70%] Built target cmlformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cdxmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
[ 70%] Built target mpdformat
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend
[ 70%] Built target opendxformat
[ 70%] Built target cdxmlformat
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pcmodelformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build
make[3]: Nothing to be done for 'src/formats/CMakeFiles/molproformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Built target pcmodelformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/groformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/posformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 71%] Built target molproformat
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend
[ 72%] Built target groformat
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pqrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Built target posformat
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build
[ 73%] Built target pqrformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemdrawcdx.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/stlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/unichemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 73%] Built target chemdrawcdx
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
[ 74%] Built target stlformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xedformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target unichemformat
make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
[ 74%] Built target xedformat
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/yasaraformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/msiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rinchiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 74%] Built target yasaraformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend
[ 74%] Built target msiformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rsmiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Built target rinchiformat
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build
[ 75%] Built target rsmiformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/PQSformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/aoforceformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pubchem.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 75%] Built target PQSformat
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build
[ 75%] Built target aoforceformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xtcformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
[ 76%] Built target pubchem
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color=
[ 76%] Built target xtcformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build
make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obrms.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/png2format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build
[ 76%] Built target png2format
make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obrms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cmlreactformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 77%] Built target xmlformat
make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build
[ 78%] Built target obrms
make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obspectrophore.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --color=
[ 79%] Built target cmlreactformat
make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obgrep.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 79%] Built target obspectrophore
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obtautomer.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 79%] Built target obgrep
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build
[ 80%] Built target obtautomer
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obabel.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[3]: Nothing to be done for 'tools/CMakeFiles/obthermo.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build
[ 81%] Built target obthermo
[ 81%] Built target obabel
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obconformer.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend
make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obsym.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obfit.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Nothing to be done for 'tools/CMakeFiles/obenergy.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
[ 81%] Built target obconformer
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build
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make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build
[ 82%] Built target obenergy
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
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make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-3.0.0+dfsg /<<BUILDDIR>>/openbabel-3.0.0+dfsg/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir/tools/CMakeFiles/obfitall.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build
[ 82%] Built target obfit
[ 82%] Built target obsym
make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend
make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend
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Install the project...
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-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/vaspformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/xsfformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/zindoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/maeformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/gamessukformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/orcaformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/APIInterface.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/CSRformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/PQSformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/MCDLformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/alchemyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/acrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/amberformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/balstformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/bgfformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/boxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cacaoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cacheformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/carformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cccformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chem3dformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chemdrawct.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chemtoolformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cifformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cofformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/crkformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cssrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/dlpolyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/exyzformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/fastsearchformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/fastaformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/featformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/fhformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/fingerprintformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/fpsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/freefracformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/ghemicalformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/gromos96format.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/groformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/lmpdatformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/lpmdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/mdffformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/mmcifformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/mmodformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/moldenformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/mpdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/mpqcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/msiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/msmsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/opendxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/outformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pcmodelformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pdbqtformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pointcloudformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/posformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pqrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/shelxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/smileyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/stlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/thermoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/tinkerformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/unichemformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/viewmolformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/xedformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/xyzformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/yasaraformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/rxnformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chemdrawcdx.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chemkinformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/rinchiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/rsmiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/xtcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/png2format.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cdxmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pubchem.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/xmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/cmlreactformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/chemdoodlejsonformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/openbabel/3.0.0/pubchemjsonformat.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/libinchi.a
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obabel
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obconformer
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obenergy
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obfit
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obfitall
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obgen
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obminimize
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obmm
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obprobe
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obprop
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obrotamer
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obrotate
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obsym
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obtautomer
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obthermo
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obdistgen
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obgrep
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obspectrophore
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obrms
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/obgui
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/bin/roundtrip
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/openbabel/_openbabel.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/openbabel/__init__.py
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/openbabel/openbabel.py
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/openbabel/pybel.py
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so
-- Installing: /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp/usr/lib/Chemistry/OpenBabel.pm
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg/builddir'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_install -Nlibchemistry-openbabel-perl
dh_missing --list-missing -Nlibchemistry-openbabel-perl
dh_missing: warning: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/Chemistry/OpenBabel.pm exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (0), libopenbabel-dev (3), libopenbabel-doc (0), libopenbabel6 (130), openbabel (39), openbabel-gui (2), python3-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
mkdir -p /<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.30
mv debian/tmp/usr/lib/auto debian/tmp/usr/lib/Chemistry \
/<<BUILDDIR>>/openbabel-3.0.0+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.30
dh_install -plibchemistry-openbabel-perl -Xperllocal.pod --autodest /usr/lib/arm-linux-gnueabihf/perl5/5.30
dh_missing --list-missing -plibchemistry-openbabel-perl -Xperllocal.pod
dh_missing: warning: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (1), libopenbabel-dev (4), libopenbabel-doc (0), libopenbabel6 (131), openbabel (39), openbabel-gui (2), python3-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_installdocs -X.js
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_installchangelogs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_installexamples -X.pyc
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_installman -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_python3 -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
I: dh_python3 fs:343: renaming _openbabel.so to _openbabel.cpython-38-arm-linux-gnueabihf.so
dh_installinit -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_installsystemduser -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_perl -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_link -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_strip_nondeterminism -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_compress -Xusr/share/doc/libopenbabel-doc/html/ \
-Xusr/share/doc/python3-openbabel/examples
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_fixperms -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_missing -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_missing: warning: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/lib/cmake/openbabel3/OpenBabel3ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: warning: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (1), libopenbabel-dev (4), libopenbabel-doc (0), libopenbabel6 (131), openbabel (39), openbabel-gui (2), python3-openbabel (1)
* dh_installdocs: libchemistry-openbabel-perl (0), libopenbabel-dev (0), libopenbabel-doc (1), libopenbabel6 (0), openbabel (3), openbabel-gui (0), python3-openbabel (2)
* dh_installexamples: libchemistry-openbabel-perl (0), libopenbabel-dev (0), libopenbabel-doc (0), libopenbabel6 (0), openbabel (1), openbabel-gui (0), python3-openbabel (10)
* dh_installman: libchemistry-openbabel-perl (0), libopenbabel-dev (0), libopenbabel-doc (0), libopenbabel6 (0), openbabel (0), openbabel-gui (0), python3-openbabel (0)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
dh_dwz -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
debian/rules override_dh_strip
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_strip --dbgsym-migration='openbabel-dbg (<< 3.0.0+dfsg)'
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-3.0.0+dfsg'
dh_makeshlibs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_shlibdeps -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obenergy contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obminimize contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obsym contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obconformer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obabel contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obtautomer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotamer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprobe contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obmm contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotate contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obdistgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrms contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgrep contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obspectrophore contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obthermo contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprop contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obfit contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obfitall contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libopenbabel6/usr/lib/arm-linux-gnueabihf/libopenbabel.so.6.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/openbabel-gui/usr/bin/obgui contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dh_installdeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_gencontrol -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dpkg-gencontrol: warning: package python3-openbabel: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-openbabel: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dh_builddeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-3.0.0\+dfsg/builddir
dpkg-deb: building package 'openbabel' in '../openbabel_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libopenbabel6-dbgsym' in '../libopenbabel6-dbgsym_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'openbabel-gui-dbgsym' in '../openbabel-gui-dbgsym_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libchemistry-openbabel-perl' in '../libchemistry-openbabel-perl_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'openbabel-dbgsym' in '../openbabel-dbgsym_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libopenbabel-dev' in '../libopenbabel-dev_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'openbabel-gui' in '../openbabel-gui_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libopenbabel6' in '../libopenbabel6_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libchemistry-openbabel-perl-dbgsym' in '../libchemistry-openbabel-perl-dbgsym_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'python3-openbabel' in '../python3-openbabel_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'python3-openbabel-dbgsym' in '../python3-openbabel-dbgsym_3.0.0+dfsg-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../openbabel_3.0.0+dfsg-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-29T03:30:49Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
openbabel_3.0.0+dfsg-3+b1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Tue, 28 Jan 2020 07:35:16 -0500
Source: openbabel (3.0.0+dfsg-3)
Binary: libchemistry-openbabel-perl libchemistry-openbabel-perl-dbgsym libopenbabel-dev libopenbabel6 libopenbabel6-dbgsym openbabel openbabel-dbgsym openbabel-gui openbabel-gui-dbgsym python3-openbabel python3-openbabel-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.0.0+dfsg-3+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
libchemistry-openbabel-perl - Chemical toolbox library (perl bindings)
libopenbabel-dev - Chemical toolbox library (development files)
libopenbabel6 - Chemical toolbox library
openbabel - Chemical toolbox utilities (cli)
openbabel-gui - Chemical toolbox utilities (graphical user interface)
python3-openbabel - Chemical toolbox library (Python bindings)
Changes:
openbabel (3.0.0+dfsg-3+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libchemistry-openbabel-perl-dbgsym_3.0.0+dfsg-3+b1_armhf.deb
------------------------------------------------------------
new Debian package, version 2.0.
size 5310604 bytes: control archive=584 bytes.
524 bytes, 14 lines control
106 bytes, 1 lines md5sums
Package: libchemistry-openbabel-perl-dbgsym
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 5584
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Breaks: openbabel-dbg (<< 3.0.0+dfsg)
Replaces: openbabel-dbg (<< 3.0.0+dfsg)
Section: debug
Priority: optional
Description: debug symbols for libchemistry-openbabel-perl
Build-Ids: 4e2870966fffd9d77477e4aed00b81d6bd55e0c8
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lrwxrwxrwx root/root 0 2020-01-28 12:35 ./usr/share/doc/libchemistry-openbabel-perl-dbgsym -> libchemistry-openbabel-perl
libchemistry-openbabel-perl_3.0.0+dfsg-3+b1_armhf.deb
-----------------------------------------------------
new Debian package, version 2.0.
size 609240 bytes: control archive=1208 bytes.
1290 bytes, 27 lines control
491 bytes, 5 lines md5sums
Package: libchemistry-openbabel-perl
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 3751
Depends: perl (>= 5.30.0-9), perlapi-5.30.0, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libopenbabel6 (>= 3.0.0+dfsg), libperl5.30 (>= 5.30.0), libstdc++6 (>= 5.2)
Section: perl
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (perl bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains Chemistry::Openbabel, the Perl binding for Open Babel.
drwxr-xr-x root/root 0 2020-01-28 12:35 ./
drwxr-xr-x root/root 0 2020-01-28 12:35 ./usr/
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libopenbabel-dev_3.0.0+dfsg-3+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 182896 bytes: control archive=3344 bytes.
1185 bytes, 28 lines control
7097 bytes, 89 lines md5sums
Package: libopenbabel-dev
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 922
Depends: libopenbabel6 (= 3.0.0+dfsg-3+b1)
Suggests: libopenbabel-doc
Section: libdevel
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (development files)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2020-01-28 12:35 ./
drwxr-xr-x root/root 0 2020-01-28 12:35 ./usr/
drwxr-xr-x root/root 0 2020-01-28 12:35 ./usr/include/
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libopenbabel6-dbgsym_3.0.0+dfsg-3+b1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 37021612 bytes: control archive=6196 bytes.
5690 bytes, 14 lines control
13661 bytes, 129 lines md5sums
Package: libopenbabel6-dbgsym
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 38916
Depends: libopenbabel6 (= 3.0.0+dfsg-3+b1)
Breaks: openbabel-dbg (<< 3.0.0+dfsg)
Replaces: openbabel-dbg (<< 3.0.0+dfsg)
Section: debug
Priority: optional
Description: debug symbols for libopenbabel6
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libopenbabel6_3.0.0+dfsg-3+b1_armhf.deb
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Package: libopenbabel6
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 13879
Depends: libc6 (>= 2.29), libcairo2 (>= 1.2.4), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libschroedinger-maeparser1, libstdc++6 (>= 9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
Conflicts: libopenbabel4
Replaces: libopenbabel4
Section: libs
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the shared library.
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openbabel-dbgsym_3.0.0+dfsg-3+b1_armhf.deb
------------------------------------------
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openbabel-gui-dbgsym_3.0.0+dfsg-3+b1_armhf.deb
----------------------------------------------
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openbabel-gui_3.0.0+dfsg-3+b1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
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1289 bytes, 27 lines control
354 bytes, 5 lines md5sums
Package: openbabel-gui
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
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Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 279
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Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (graphical user interface)
Open Babel is a chemical toolbox designed to speak the many languages of
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.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
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openbabel_3.0.0+dfsg-3+b1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
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2836 bytes, 46 lines md5sums
Package: openbabel
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Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (cli)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
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.
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* obrotamer: Generate conformer/rotamer coordinates
* obconformer: Generate low-energy conformers
* obchiral: Print molecular chirality information
* obrotate: Rotate dihedral angle of molecules in batch mode
* obprobe: Create electrostatic probe grid
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python3-openbabel-dbgsym_3.0.0+dfsg-3+b1_armhf.deb
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Package: python3-openbabel-dbgsym
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 5706
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Breaks: openbabel-dbg (<< 3.0.0+dfsg)
Replaces: openbabel-dbg (<< 3.0.0+dfsg)
Section: debug
Priority: optional
Description: debug symbols for python3-openbabel
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python3-openbabel_3.0.0+dfsg-3+b1_armhf.deb
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259 bytes, 12 lines * postinst #!/bin/sh
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Package: python3-openbabel
Source: openbabel (3.0.0+dfsg-3)
Version: 3.0.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 3029
Depends: python3 (<< 3.9), python3 (>= 3.8~), python3:any, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libopenbabel6 (>= 3.0.0+dfsg), libpython3.8 (>= 3.8.2), libstdc++6 (>= 5.2)
Provides: python3.8-openbabel
Section: python
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (Python bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the Python binding.
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| Summary |
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Build Architecture: armhf
Build-Space: 1299008
Build-Time: 6157
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 3347
Job: openbabel_3.0.0+dfsg-3
Machine Architecture: armhf
Package: openbabel
Package-Time: 9604
Source-Version: 3.0.0+dfsg-3
Space: 1299008
Status: successful
Version: 3.0.0+dfsg-3+b1
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Finished at 2020-03-29T03:30:49Z
Build needed 02:40:04, 1299008k disc space