openbabel →
2.4.1+dfsg-3 →
armhf → 2018-11-17 12:44:56
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| openbabel 2.4.1+dfsg-3 (armhf) Sat, 17 Nov 2018 10:31:12 +0000 |
+==============================================================================+
Package: openbabel
Version: 2.4.1+dfsg-3
Source Version: 2.4.1+dfsg-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-23791f8d-c0d1-4aef-8202-1264105168f2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 27s (881 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'openbabel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/openbabel.git
Please use:
git clone https://salsa.debian.org/debichem-team/openbabel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5785 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main openbabel 2.4.1+dfsg-3 (dsc) [2642 B]
Get:2 http://172.17.0.1/private buster-staging/main openbabel 2.4.1+dfsg-3 (tar) [5760 kB]
Get:3 http://172.17.0.1/private buster-staging/main openbabel 2.4.1+dfsg-3 (diff) [22.3 kB]
Fetched 5785 kB in 1s (8687 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/openbabel-RbJRbk/openbabel-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/openbabel-RbJRbk' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-z79FCO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-z79FCO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-z79FCO/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Packages [435 B]
Fetched 2111 B in 1s (3036 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 65 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (37.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17652 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper (>= 11), dh-python, doxygen, libcairo2-dev, libeigen3-dev, libperl-dev, libwxgtk3.0-dev (>= 3.0.2+dfsg-1ubuntu1), libxml2-dev, pkg-config, python-all-dev (>> 2.6.6-3~), python-setuptools, zlib1g-dev
Filtered Build-Depends: cmake, debhelper (>= 11), dh-python, doxygen, libcairo2-dev, libeigen3-dev, libperl-dev, libwxgtk3.0-dev (>= 3.0.2+dfsg-1ubuntu1), libxml2-dev, pkg-config, python-all-dev (>> 2.6.6-3~), python-setuptools, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-openbabel-dummy' in '/<<BUILDDIR>>/resolver-z79FCO/apt_archive/sbuild-build-depends-openbabel-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-openbabel-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Sources [598 B]
Get:5 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ Packages [687 B]
Fetched 2618 B in 1s (3421 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install openbabel build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext
gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base
gtk-update-icon-cache hicolor-icon-theme icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libatk1.0-0 libatk1.0-data libavahi-client3
libavahi-common-data libavahi-common3 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libclang1-6.0 libcroco3
libcups2 libcurl4 libdatrie1 libdrm-amdgpu1 libdrm-common libdrm-dev
libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2
libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2 libegl-mesa0
libegl1 libeigen3-dev libelf1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi0
libgbm1 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgirepository-1.0-1
libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2
libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev
libglib2.0-dev-bin libglu1-mesa libglu1-mesa-dev libglvnd-core-dev
libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev
libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev
libicu-le-hb-dev libicu-le-hb0 libicu60 libicu63 libiculx63 libjbig0
libjpeg62-turbo libjsoncpp1 libllvm6.0 liblzo2-2 libmagic-mgc libmagic1
libmpdec2 libnghttp2-14 libnotify4 libopengl0 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libperl-dev libpipeline1 libpixman-1-0 libpixman-1-dev
libpng-dev libpsl5 libpthread-stubs0-dev libpython-all-dev libpython-dev
libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib librhash0 librsvg2-2
librsvg2-common librtmp1 libsensors4 libsigsegv2 libsm-dev libsm6 libssh2-1
libthai-data libthai0 libtiff5 libtool libuv1 libwayland-client0
libwayland-server0 libwebp6 libwxbase3.0-0v5 libwxbase3.0-dev
libwxgtk3.0-0v5 libwxgtk3.0-dev libx11-6 libx11-data libx11-dev
libx11-xcb-dev libx11-xcb1 libxapian30 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev
libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev
libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev
libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1 libxcb-xfixes0
libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1 libxcursor1
libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes-dev libxfixes3 libxi6 libxinerama1 libxml2 libxml2-dev libxrandr2
libxrender-dev libxrender1 libxshmfence-dev libxshmfence1 libxxf86vm-dev
libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf
python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.6 python3.6-minimal shared-mime-info
ucf uuid-dev wx-common wx3.0-headers x11-common x11proto-core-dev
x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev
x11proto-gl-dev x11proto-xext-dev x11proto-xf86vidmode-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui
graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libcairo2-doc cups-common libeigen3-doc libmpfrc++-dev libglib2.0-doc
libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils
gvfs libice-doc icu-doc librsvg2-bin lm-sensors libsm-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk wx3.0-doc libx11-doc xapian-tools
libxcb-doc libxext-doc m4-doc apparmor less www-browser libmail-box-perl
python-doc python-tk python-setuptools-doc python2-doc python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3.6-venv
python3.6-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libgdk-pixbuf2.0-bin xdg-user-dirs
libgail-common libgtk2.0-bin notification-daemon libpng-tools publicsuffix
libltdl-dev libmail-sendmail-perl zip
The following NEW packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext
gettext-base gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base
gtk-update-icon-cache hicolor-icon-theme icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libatk1.0-0 libatk1.0-data libavahi-client3
libavahi-common-data libavahi-common3 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libclang1-6.0 libcroco3
libcups2 libcurl4 libdatrie1 libdrm-amdgpu1 libdrm-dev libdrm-etnaviv1
libdrm-exynos1 libdrm-freedreno1 libdrm-nouveau2 libdrm-omap1 libdrm-radeon1
libdrm-tegra0 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1
libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi0 libgbm1
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgirepository-1.0-1 libgl1
libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglib2.0-0
libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin
libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0
libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgtk2.0-0
libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
libharfbuzz0b libice-dev libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0
libicu60 libicu63 libiculx63 libjbig0 libjpeg62-turbo libjsoncpp1 libllvm6.0
liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libnotify4
libopengl0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1
libpixman-1-0 libpixman-1-dev libpng-dev libpsl5 libpthread-stubs0-dev
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib librhash0 librsvg2-2 librsvg2-common librtmp1
libsensors4 libsigsegv2 libsm-dev libsm6 libssh2-1 libthai-data libthai0
libtiff5 libtool libuv1 libwayland-client0 libwayland-server0 libwebp6
libwxbase3.0-0v5 libwxbase3.0-dev libwxgtk3.0-0v5 libwxgtk3.0-dev libx11-6
libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxapian30 libxau-dev
libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev
libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0
libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0
libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1
libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxfixes-dev libxfixes3 libxi6 libxinerama1 libxml2 libxml2-dev
libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1
libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config
po-debconf python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.6 python3.6-minimal
sbuild-build-depends-openbabel-dummy shared-mime-info ucf uuid-dev wx-common
wx3.0-headers x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev
x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
The following packages will be upgraded:
libdrm-common libdrm2
2 upgraded, 255 newly installed, 0 to remove and 63 not upgraded.
Need to get 160 MB/163 MB of archives.
After this operation, 679 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-z79FCO/apt_archive ./ sbuild-build-depends-openbabel-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-4 [394 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-4 [1088 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-4 [1843 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-4 [299 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.1.1-1 [1014 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-4 [7974 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git180724-3 [12.9 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf shared-mime-info armhf 1.10-1 [762 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-common all 2.38.0+dfsg-6+rpi1 [315 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.38.0+dfsg-6+rpi1 [158 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf gtk-update-icon-cache armhf 3.24.1-2+rvt [80.1 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf librsvg2-2 armhf 2.40.20-3 [92.4 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf librsvg2-common armhf 2.40.20-3 [17.2 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf adwaita-icon-theme all 3.30.0-1 [11.7 MB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.12.3-3 [1437 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-5 [266 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.6-3 [97.1 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.23.2-1 [94.3 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.12.3-3 [2526 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0.1-9.2+rpi1 [12.5 MB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libclang1-6.0 armhf 1:6.0.1-9.2+rpi1 [5685 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.9-1 [955 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 2.1.1-1 [749 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 2.1.1-1 [757 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-4 [166 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libatk1.0-data all 2.30.0-1 [145 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libatk1.0-0 armhf 2.30.0-1 [42.4 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-4+b1 [54.0 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libcairo-gobject2 armhf 1.16.0-1 [123 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-1 [150 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libfreetype6-dev armhf 2.8.1-2 [2594 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf uuid-dev armhf 2.32.1-0.1 [91.9 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf libxcb1-dev armhf 1.13.1-1 [169 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libx11-dev armhf 2:1.6.7-1 [760 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:127 http://172.17.0.1/private buster-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libsm-dev armhf 2:1.2.2-1+b3 [33.4 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libpixman-1-dev armhf 0.34.0-2 [469 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libxcb-render0-dev armhf 1.13.1-1 [111 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0-dev armhf 1.13.1-1 [100 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libcairo2-dev armhf 1.16.0-1 [620 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.8-5+b3 [285 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libdrm-common all 2.4.95-1+rpi1 [13.9 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libdrm2 armhf 2.4.95-1+rpi1 [35.4 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libdrm-amdgpu1 armhf 2.4.95-1+rpi1 [25.8 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libdrm-radeon1 armhf 2.4.95-1+rpi1 [28.5 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libdrm-nouveau2 armhf 2.4.95-1+rpi1 [24.4 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libdrm-omap1 armhf 2.4.95-1+rpi1 [16.1 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libdrm-freedreno1 armhf 2.4.95-1+rpi1 [25.8 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libdrm-exynos1 armhf 2.4.95-1+rpi1 [19.1 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libdrm-tegra0 armhf 2.4.95-1+rpi1 [15.5 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libdrm-etnaviv1 armhf 2.4.95-1+rpi1 [20.0 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libdrm-dev armhf 2.4.95-1+rpi1 [139 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf libwayland-server0 armhf 1.16.0-1 [26.0 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libgbm1 armhf 18.1.9-1 [60.3 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf libglapi-mesa armhf 18.1.9-1 [70.1 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf libwayland-client0 armhf 1.16.0-1 [21.2 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libx11-xcb1 armhf 2:1.6.7-1 [190 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0 armhf 1.13.1-1 [100 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-0 armhf 1.13.1-1 [100 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libxcb-present0 armhf 1.13.1-1 [99.1 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libxcb-sync1 armhf 1.13.1-1 [102 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0 armhf 1.13.1-1 [103 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:165 http://172.17.0.1/private buster-staging/main armhf libegl-mesa0 armhf 18.1.9-1 [110 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libglvnd0 armhf 1.1.0-1 [54.5 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libegl1 armhf 1.1.0-1 [27.6 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libeigen3-dev all 3.3.5-2 [848 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0 armhf 1.13.1-1 [114 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libsensors4 armhf 1:3.4.0-4+b2 [50.4 kB]
Get:171 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dri armhf 18.1.9-1 [4486 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libglx-mesa0 armhf 18.1.9-1 [159 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libglx0 armhf 1.1.0-1 [24.6 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libgl1 armhf 1.1.0-1 [107 kB]
Get:175 http://172.17.0.1/private buster-staging/main armhf mesa-common-dev armhf 18.1.9-1 [587 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf libgles1 armhf 1.1.0-1 [13.8 kB]
Get:178 http://172.17.0.1/private buster-staging/main armhf libgles2 armhf 1.1.0-1 [20.6 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libopengl0 armhf 1.1.0-1 [40.3 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B]
Get:181 http://172.17.0.1/private buster-staging/main armhf libx11-xcb-dev armhf 2:1.6.7-1 [192 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf libxcb-dri3-dev armhf 1.13.1-1 [101 kB]
Get:183 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0 armhf 1.13.1-1 [109 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libxcb-randr0-dev armhf 1.13.1-1 [113 kB]
Get:185 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0 armhf 1.13.1-1 [99.4 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libxcb-shape0-dev armhf 1.13.1-1 [101 kB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libxcb-xfixes0-dev armhf 1.13.1-1 [105 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libxcb-sync-dev armhf 1.13.1-1 [104 kB]
Get:189 http://172.17.0.1/private buster-staging/main armhf libxcb-present-dev armhf 1.13.1-1 [101 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libxshmfence-dev armhf 1.3-1 [8224 B]
Get:191 http://172.17.0.1/private buster-staging/main armhf libxcb-dri2-0-dev armhf 1.13.1-1 [102 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libxcb-glx0-dev armhf 1.13.1-1 [120 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf x11proto-fixes-dev all 1:2018.4-4 [3140 B]
Get:194 http://172.17.0.1/private buster-staging/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf x11proto-damage-dev all 1:2018.4-4 [3140 B]
Get:196 http://172.17.0.1/private buster-staging/main armhf libxdamage-dev armhf 1:1.1.4-3 [13.9 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [3140 B]
Get:198 http://172.17.0.1/private buster-staging/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [24.9 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf x11proto-dri2-dev all 2018.4-4 [3132 B]
Get:200 http://172.17.0.1/private buster-staging/main armhf x11proto-gl-dev all 2018.4-4 [3124 B]
Get:201 http://172.17.0.1/private buster-staging/main armhf libgl1-mesa-dev armhf 18.1.9-1 [44.4 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libglu1-mesa-dev armhf 9.0.0-2.1 [169 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-common all 2.24.32-3 [2698 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libxcursor1 armhf 1:1.1.15-2 [33.5 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf libxinerama1 armhf 2:1.1.4-1 [16.2 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf libgtk2.0-0 armhf 2.24.32-3 [1501 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 2.1.1-1 [741 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf libiculx63 armhf 63.1-4 [26.3 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git180724-3 [28.5 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-4 [8865 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 2.1.1-1 [1099 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf libnotify4 armhf 0.7.7-3 [20.1 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf libperl-dev armhf 5.28.0-3 [3150 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-4 [871 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-4 [30.8 MB]
Get:217 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:218 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:220 http://172.17.0.1/private buster-staging/main armhf libwxbase3.0-0v5 armhf 3.0.4+dfsg-4 [889 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf wx3.0-headers all 3.0.4+dfsg-4 [1128 kB]
Get:222 http://172.17.0.1/private buster-staging/main armhf libwxbase3.0-dev armhf 3.0.4+dfsg-4 [138 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf libwxgtk3.0-0v5 armhf 3.0.4+dfsg-4 [3566 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf wx-common armhf 3.0.4+dfsg-4 [169 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf libwxgtk3.0-dev armhf 3.0.4+dfsg-4 [138 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7 [672 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:228 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-4 [283 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:230 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:231 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:232 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 40.5.0-1 [180 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 40.5.0-1 [376 kB]
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Running in chroot, ignoring request.
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Not building database; man-db/auto-update is not 'true'.
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Regenerating fonts cache... done.
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Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up python-setuptools (40.5.0-1) ...
Setting up libxinerama1:armhf (2:1.1.4-1) ...
Setting up libxcb-randr0-dev:armhf (1.13.1-1) ...
Setting up libxdamage1:armhf (1:1.1.4-3) ...
Setting up mesa-common-dev:armhf (18.1.9-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-1) ...
Setting up libarchive13:armhf (3.2.2-5) ...
Setting up libxcb-xfixes0-dev:armhf (1.13.1-1) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.38.0+dfsg-6+rpi1) ...
Setting up libcairo-gobject2:armhf (1.16.0-1) ...
Setting up libxdamage-dev:armhf (1:1.1.4-3) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up gtk-update-icon-cache (3.24.1-2+rvt) ...
Setting up python-all-dev (2.7.15-3) ...
Setting up libxcb-present-dev:armhf (1.13.1-1) ...
Setting up cmake (3.12.3-3) ...
Setting up libglx-mesa0:armhf (18.1.9-1) ...
Setting up libnotify4:armhf (0.7.7-3) ...
Setting up po-debconf (1.0.20) ...
Setting up libcairo2-dev:armhf (1.16.0-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up libglx0:armhf (1.1.0-1) ...
Setting up librsvg2-2:armhf (2.40.20-3) ...
Setting up librsvg2-common:armhf (2.40.20-3) ...
Setting up libgl1:armhf (1.1.0-1) ...
Setting up libglu1-mesa:armhf (9.0.0-2.1) ...
Setting up adwaita-icon-theme (3.30.0-1) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libgtk2.0-0:armhf (2.24.32-3) ...
Setting up libwxgtk3.0-0v5:armhf (3.0.4+dfsg-4) ...
Setting up libglvnd-dev:armhf (1.1.0-1) ...
Setting up libgl1-mesa-dev:armhf (18.1.9-1) ...
Setting up libglu1-mesa-dev:armhf (9.0.0-2.1) ...
Setting up libwxgtk3.0-dev (3.0.4+dfsg-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/gtk2-unicode-3.0 to provide /usr/bin/wx-config (wx-config) in auto mode
Setting up libharfbuzz-dev:armhf (2.1.1-1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git180724-3) ...
Setting up libicu-dev (63.1-4) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up debhelper (11.5.3) ...
Setting up sbuild-build-depends-openbabel-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.38.0+dfsg-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-6+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-7+rpi1 gcc-8_8.2.0-7+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 adwaita-icon-theme_3.30.0-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-6+rpi1 binutils-arm-linux-gnueabihf_2.31.1-6+rpi1 binutils-common_2.31.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 cmake_3.12.3-3 cmake-data_3.12.3-3 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-7+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-7+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-7+rpi1 gcc-8-base_8.2.0-7+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_2.1.1-1 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gtk-update-icon-cache_3.24.1-2+rvt gzip_1.9-2.1 hicolor-icon-theme_0.17-2 hostname_3.21 icu-devtools_63.1-4 inetutils-ping_2:1.9.4-5 init-system-helpers_1.54 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libarchive13_3.2.2-5 libargon2-1_0~20171227-0.1 libasan5_8.2.0-7+rpi1 libassuan0_2.5.1-2 libatk1.0-0_2.30.0-1 libatk1.0-data_2.30.0-1 libatomic1_8.2.0-7+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libavahi-client3_0.7-4+b1 libavahi-common-data_0.7-4+b1 libavahi-common3_0.7-4+b1 libbinutils_2.31.1-6+rpi1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcairo-gobject2_1.16.0-1 libcairo-script-interpreter2_1.16.0-1 libcairo2_1.16.0-1 libcairo2-dev_1.16.0-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-7+rpi1 libclang1-6.0_1:6.0.1-9.2+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.5-1 libcryptsetup4_2:1.7.5-1 libcups2_2.2.8-5+b3 libcurl4_7.61.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-amdgpu1_2.4.95-1+rpi1 libdrm-common_2.4.95-1+rpi1 libdrm-dev_2.4.95-1+rpi1 libdrm-etnaviv1_2.4.95-1+rpi1 libdrm-exynos1_2.4.95-1+rpi1 libdrm-freedreno1_2.4.95-1+rpi1 libdrm-nouveau2_2.4.95-1+rpi1 libdrm-omap1_2.4.95-1+rpi1 libdrm-radeon1_2.4.95-1+rpi1 libdrm-tegra0_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libedit2_3.1-20180525-1 libegl-mesa0_18.1.9-1 libegl1_1.1.0-1 libeigen3-dev_3.3.5-2 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.45.0-1 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfreetype6_2.8.1-2 libfreetype6-dev_2.8.1-2 libfribidi0_1.0.5-3 libgbm1_18.1.9-1 libgcc-8-dev_8.2.0-7+rpi1 libgcc1_1:8.2.0-7+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18-2 libgdbm3_1.8.3-14 libgdbm6_1.18-2 libgdk-pixbuf2.0-0_2.38.0+dfsg-6+rpi1 libgdk-pixbuf2.0-common_2.38.0+dfsg-6+rpi1 libgirepository-1.0-1_1.58.0-1 libgl1_1.1.0-1 libgl1-mesa-dev_18.1.9-1 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libjpeg62-turbo_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libllvm6.0_1:6.0.1-9.2+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses5_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnotify4_0.7.7-3 libnpth0_1.6-1 libnss-systemd_239-10+rpi1 libopengl0_1.1.0-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl-dev_5.28.0-3 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libpixman-1-dev_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpthread-stubs0-dev_0.3-4 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-4 libpython2.7-dev_2.7.15-4 libpython2.7-minimal_2.7.15-4 libpython2.7-stdlib_2.7.15-4 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline7_7.0-5 librhash0_1.3.6-3 librsvg2-2_2.40.20-3 librsvg2-common_2.40.20-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsensors4_1:3.4.0-4+b2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-6 libubsan1_8.2.0-7+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libuv1_1.23.2-1 libwayland-client0_1.16.0-1 libwayland-server0_1.16.0-1 libwebp6_0.6.1-2 libwxbase3.0-0v5_3.0.4+dfsg-4 libwxbase3.0-dev_3.0.4+dfsg-4 libwxgtk3.0-0v5_3.0.4+dfsg-4 libwxgtk3.0-dev_3.0.4+dfsg-4 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxapian30_1.4.9-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-1 libxcb-dri2-0-dev_1.13.1-1 libxcb-dri3-0_1.13.1-1 libxcb-dri3-dev_1.13.1-1 libxcb-glx0_1.13.1-1 libxcb-glx0-dev_1.13.1-1 libxcb-present-dev_1.13.1-1 libxcb-present0_1.13.1-1 libxcb-randr0_1.13.1-1 libxcb-randr0-dev_1.13.1-1 libxcb-render0_1.13.1-1 libxcb-render0-dev_1.13.1-1 libxcb-shape0_1.13.1-1 libxcb-shape0-dev_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb-shm0-dev_1.13.1-1 libxcb-sync-dev_1.13.1-1 libxcb-sync1_1.13.1-1 libxcb-xfixes0_1.13.1-1 libxcb-xfixes0-dev_1.13.1-1 libxcb1_1.13.1-1 libxcb1-dev_1.13.1-1 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.1.15-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.4-1 libxml2_2.9.4+dfsg1-7 libxml2-dev_2.9.4+dfsg1-7 libxrandr2_2:1.5.1-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mesa-common-dev_18.1.9-1 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_40.5.0-1 python-setuptools_40.5.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-4 python2.7-dev_2.7.15-4 python2.7-minimal_2.7.15-4 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-openbabel-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_239-10+rpi1 util-linux_2.32.1-0.1 uuid-dev_2.32.1-0.1 wx-common_3.0.4+dfsg-4 wx3.0-headers_3.0.4+dfsg-4 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-dri2-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-gl-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 12 12:48:37 2018 UTC
gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./openbabel_2.4.1+dfsg-3.dsc
dpkg-source: info: extracting openbabel in /<<BUILDDIR>>/openbabel-2.4.1+dfsg
dpkg-source: info: unpacking openbabel_2.4.1+dfsg.orig.tar.xz
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Check disc space
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User Environment
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APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
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PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
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SHELL=/bin/sh
TERM=linux
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dpkg-buildpackage
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dpkg-buildpackage: info: source package openbabel
dpkg-buildpackage: info: source version 2.4.1+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build openbabel-2.4.1+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
dh_auto_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
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dh build-arch --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
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make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON
cd builddir && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON ..
-- The C compiler identification is GNU 8.2.0
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-- Detecting CXX compiler ABI info
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CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy):
The OLD behavior for policy CMP0005 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Using included inchi library.
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.4")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found wxWidgets: -L/usr/lib/arm-linux-gnueabihf;-pthread;;;-lwx_baseu-3.0;-lwx_gtk2u_core-3.0;-lwx_gtk2u_adv-3.0 (found version "3.0.4")
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-- Use std::tr1::shared_ptr in tr1/memory
-- Found OpenMP_C: -fopenmp (found version "4.5")
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-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29")
-- Checking for module 'cairo'
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-- Cairo found. PNG output will be supported.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen missing components: dot
-- Looking for getopt
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-- Found PythonInterp: /usr/bin/python (found version "2.7.15")
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.15+")
-- Python bindings will be compiled
-- Found Perl: /usr/bin/perl (found version "5.28.0")
-- Found PerlLibs: /usr/lib/arm-linux-gnueabihf/libperl.so.5.28 (found version "5.28.0")
-- Perl bindings will be compiled
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CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
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CMAKE_INSTALL_RUNSTATEDIR
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimap1.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimap1.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimap4.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimap4.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichinorm.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichinorm.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiprt2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiprt2.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiprt3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiprt3.c
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/builder.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/builder.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBBuilder::LoadFragments()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiqueu.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiqueu.c
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector<int>, std::vector<OpenBabel::vector3>, std::vector<int>)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiread.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiread.c
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiring.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiring.c
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chains.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chains.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chains.cpp
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr1.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr1.c
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chargemodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr2.c
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chiral.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/data.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp:23:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp:23:
/usr/include/c++/8/bits/stl_vector.h: In function 'void OpenBabel::construct_g_matrix(OpenBabel::OBMol&, std::vector<std::vector<double> >&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void OpenBabel::construct_c_matrix(OpenBabel::OBMol&, std::vector<std::vector<double> >&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr3.c
/usr/include/c++/8/bits/stl_vector.h: In function 'void OpenBabel::GraphPotentials(OpenBabel::OBMol&, std::vector<double>&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'double OpenBabel::CalcSignedVolume(OpenBabel::OBMol&, OpenBabel::OBAtom*, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data_utilities.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<unsigned int, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >'} changed in GCC 7.1
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/descriptor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptor.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator<OpenBabel::OBAtomHOF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAtomHOF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAtomHOF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp:27:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp:27:
/usr/include/c++/8/bits/stl_vector.h: In function 'bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector<double>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr4.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr4.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr4.c
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBIsotopeTable::ParseLine(const char*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<double> OpenBabel::OBElementTable::GetRGB(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/fingerprint.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprint.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/generic.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/graphsym.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/graphsym.cpp
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichitaut.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichitaut.c
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBUnitCell::GetCellVectors() const':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/list:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/transform3d.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/spacegroup.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/generic.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:51,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator<OpenBabel::vector3>; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
list<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBAngle; _Alloc = std::allocator<OpenBabel::OBAngle>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAngle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAngle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBAngleData::SetData(OpenBabel::OBAngle&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ikey_base26.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ikey_base26.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ikey_dll.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ikey_dll.c
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>; _Alloc = std::allocator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::quad<OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In constructor 'OpenBabel::OBTorsion::OBTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator<OpenBabel::OBFFConstraint>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFConstraint>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll.c
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddIgnore(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 10%] Building CXX object src/CMakeFiles/openbabel.dir/grid.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/grid.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomConstraint(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_a.c
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/list:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/transform3d.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/spacegroup.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/generic.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:51,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/8/bits/list.tcc: In member function 'void OpenBabel::OBUnitCell::FillUnitCell(OpenBabel::OBMol*)':
/usr/include/c++/8/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
_M_assign_dispatch(__x.begin(), __x.end(), __false_type());
^~~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_a2.c
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In function 'std::istream& OpenBabel::operator>>(std::istream&, OpenBabel::OBFloatGrid&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFloatGrid::SetNumberOfPoints(int, int, int)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_main.c
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/griddata.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/griddata.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/runichi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/runichi.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/isomorphism.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/isomorphism.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/kekulize.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/locale.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/locale.cpp
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/matrix.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/matrix.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/matrix.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In function 'bool OpenBabel::mult_matrix(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'bool OpenBabel::convert_matrix_f(double*, std::vector<std::vector<double> >&, int, int)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'bool OpenBabel::convert_matrix_ff(double**, std::vector<std::vector<double> >&, int, int)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4463:43: warning: '%3d' directive writing between 3 and 4 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
sprintf( entry, " %3d %3d", i+1, (int)at[i].charge );
^~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4463:37: note: directive argument in the range [-128, 127]
sprintf( entry, " %3d %3d", i+1, (int)at[i].charge );
^~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:40:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 15 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4484:47: warning: '%3d' directive writing 3 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
sprintf( entry, " %3d %3d", i+1, radical );
^~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4484:41: note: directive argument in the range [1, 3]
sprintf( entry, " %3d %3d", i+1, radical );
^~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:40:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:10: note: '__builtin___sprintf_chk' output between 9 and 14 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 13%] Linking C static library libinchi.a
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -P CMakeFiles/inchi.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mcdlutil.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp
/usr/bin/ar qc libinchi.a CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o
/usr/bin/ranlib libinchi.a
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 13%] Built target inchi
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/molchrg.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/molchrg.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/mol.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mol.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obconversion.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obconversion.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/oberror.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/oberror.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obiter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obiter.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obutil.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<OpenBabel::OBMol> OpenBabel::OBMol::Separate(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/op.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/op.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/op.cpp
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::ConnectTheDots()':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/parsmart.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/parsmart.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::PerceiveBondOrders()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/patty.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/patty.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/phmodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBPhModel::ParseLine(const char*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/plugin.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/plugin.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/pointgroup.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/pointgroup.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/query.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/query.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rand.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rand.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/residue.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/residue.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/ring.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ring.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In function 'void OpenBabel::generateDiagram(std::vector<int>, std::vector<int>, std::vector<double>&, std::vector<double>&, int, int)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotamer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/spectrophore.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tautomer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/tautomer.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/rotamer.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/rotamer.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBRotamerList::Setup(OpenBabel::OBMol&, OpenBabel::OBRotorList&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBRotor::RemoveSymTorsionValues(int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBRotor::Precalc(std::vector<double*>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBRotorRules::ParseLine(const char*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tokenst.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/tokenst.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/transform.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/transform.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/transform.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/typer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/typer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/typer.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obmolecformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/spectrophore.h:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/spectrophore.h:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<double> OpenBabel::OBSpectrophore::GetSpectrophore(OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/conformersearch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/confsearch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/distgeom.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/distgeom.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator<OpenBabel::ConformerScore>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::ConformerScore>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function '_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<std::binder2nd<std::less<double> > >]':
/usr/include/c++/8/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__remove_if(_ForwardIterator __first, _ForwardIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In function 'std::vector<OpenBabel::vector3> OpenBabel::GetHeavyAtomCoords(const OpenBabel::OBMol*, const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'int OpenBabel::OBConformerSearch::share_fitness()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/dlhandler_unix.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)':
/usr/include/c++/8/bits/stl_algo.h:939:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return std::__remove_if(__first, __last,
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
__gnu_cxx::__ops::__pred_iter(__pred));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Alloc = std::allocator<std::pair<std::vector<OpenBabel::vector3>, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<std::vector<OpenBabel::vector3>, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::_Alloc_node; _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector<OpenBabel::vector3>, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual double OpenBabel::OBMinimizingEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual double OpenBabel::OBEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBDiversePoses::AddPose(double*, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Distance = int; _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/depict.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__make_heap(__first, __middle, __comp);
~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void OpenBabel::UpdateConformersFromTree(OpenBabel::OBMol*, std::vector<double>&, OpenBabel::OBDiversePoses*, bool)':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'int OpenBabel::OBConformerSearch::score_population()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/svgpainter.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/matrix3x3.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/spacegroup.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/spacegroup.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/transform3d.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/transform3d.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/vector3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/vector3.cpp
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/align.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/stereo.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/stereo.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/tetranonplanar.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetraplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/tetraplanar.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/squareplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/squareplanar.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/cistrans.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/cistrans.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.o
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[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/perception.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp
[ 22%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/facade.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/facade.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetRefMol(const OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetTargetMol(const OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBAlign::GetAlignment()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBTetrahedralStereo*> OpenBabel::TetrahedralFrom3D(OpenBabel::OBMol*, const OBStereoUnitSet&, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBCisTransStereo*> OpenBabel::CisTransFrom3D(OpenBabel::OBMol*, const OBStereoUnitSet&, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBCisTransStereo*> OpenBabel::CisTransFrom2D(OpenBabel::OBMol*, const OBStereoUnitSet&, const std::map<OpenBabel::OBBond*, OpenBabel::OBStereo::BondDirection>*, bool)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addfilename.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addfilename.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addinindex.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addinindex.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/cmpdfilter.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addpolarh.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprints/finger3.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addnonpolarh.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBSmartsPattern*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBSmartsPattern*, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBGroupContrib::ParseFile()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGaff>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/canonical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/canonical.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/filters.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprints/fingerecfp.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/changecell.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/inchidescriptor.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::OpChangeCell::vc_val; _Alloc = std::allocator<OpenBabel::OpChangeCell::vc_val>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OpChangeCell::vc_val>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OpChangeCell::vc_val*, std::vector<OpenBabel::OpChangeCell::vc_val> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OpChangeCell::vc_val*, std::vector<OpenBabel::OpChangeCell::vc_val> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 25%] Linking CXX shared module ../lib/plugin_fingerprints.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 25%] Built target plugin_fingerprints
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color=
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/delpolarh.cpp
Scanning dependencies of target plugin_charges
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eem.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/smartsdescriptors.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/delnonpolarh.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator<OpenBabel::EEMParameter>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::EEMParameter>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::EEMCharges::_loadParameters()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 26%] Linking CXX shared module ../lib/plugin_descriptors.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
[ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/gasteiger.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/gasteiger.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 26%] Built target plugin_descriptors
[ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/none.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/none.cpp
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen2D.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/gen2D.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGhemical>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >'} changed in GCC 7.1
[ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/mmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 26%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xmlformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGhemical>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGhemical>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/fromfile.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/fromfile.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpFillUC::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/forcefield.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/fromfile.cpp:21:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 29%] Linking CXX shared module ../../lib/xmlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 29%] Built target xmlformat
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eqeq.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/gen3d.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/largest.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationUFF>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationUFF>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationUFF>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/loader.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFStrBndCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFStrBndCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationMMFF94>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opsplit.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opsplit.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 29%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/optransform.cpp
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::__cxx11::string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 31%] Linking CXX shared module ../lib/plugin_forcefields.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target plugin_forcefields
[ 31%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qeq.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/partialcharges.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/partialcharges.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/readconformers.cpp
[ 31%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp
[ 31%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp
[ 31%] Linking CXX shared module ../../lib/cmlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.o CMakeFiles/cmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBBase*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBBase*, double> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBBase*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target cmlformat
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cdxmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cdxmlformat.cpp
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBBase*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
__heap_select(_RandomAccessIterator __first,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1668:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1933:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
std::__heap_select(__first, __middle, __last, __comp);
~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpSort::ProcessVec(std::vector<OpenBabel::OBBase*>&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
[ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opisomorph.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/ophighlight.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/ophighlight.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlreactformat.cpp
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/conformer.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::QEqCharges::ParseParamFile()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlreactformat.cpp:15:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opalign.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opconfab.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opconfab.cpp
[ 34%] Linking CXX shared module ../../lib/cmlreactformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::QTPIECharges::ParseParamFile()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Built target cmlreactformat
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xtcformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Building CXX object src/formats/CMakeFiles/xtcformat.dir/xtcformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxtcformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xtcformat.dir/xtcformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xtcformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 35%] Linking CXX shared module ../lib/plugin_ops.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.o CMakeFiles/plugin_ops.dir/ops/addinindex.o CMakeFiles/plugin_ops.dir/ops/addpolarh.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o CMakeFiles/plugin_ops.dir/ops/canonical.o CMakeFiles/plugin_ops.dir/ops/changecell.o CMakeFiles/plugin_ops.dir/ops/delpolarh.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o CMakeFiles/plugin_ops.dir/ops/gen2D.o CMakeFiles/plugin_ops.dir/ops/fillUC.o CMakeFiles/plugin_ops.dir/ops/forcefield.o CMakeFiles/plugin_ops.dir/ops/gen3d.o CMakeFiles/plugin_ops.dir/ops/largest.o CMakeFiles/plugin_ops.dir/ops/loader.o CMakeFiles/plugin_ops.dir/ops/opsplit.o CMakeFiles/plugin_ops.dir/ops/optransform.o CMakeFiles/plugin_ops.dir/ops/partialcharges.o CMakeFiles/plugin_ops.dir/ops/readconformers.o CMakeFiles/plugin_ops.dir/ops/sort.o CMakeFiles/plugin_ops.dir/ops/opisomorph.o CMakeFiles/plugin_ops.dir/ops/ophighlight.o CMakeFiles/plugin_ops.dir/ops/xout.o CMakeFiles/plugin_ops.dir/ops/conformer.o CMakeFiles/plugin_ops.dir/ops/opalign.o CMakeFiles/plugin_ops.dir/ops/opconfab.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Built target plugin_ops
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color=
Scanning dependencies of target chemdrawcdx
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemdrawcdx.cpp
[ 35%] Linking CXX shared module ../../lib/xtcformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xtcformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xtcformat.so CMakeFiles/xtcformat.dir/xtcformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Built target xtcformat
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rxnformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/rxnformat.dir/rxnformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/rxnformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 35%] Linking CXX shared module ../../lib/chemdrawcdx.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Built target chemdrawcdx
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color=
Scanning dependencies of target yasaraformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp
[ 35%] Linking CXX shared module ../../lib/rxnformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Built target rxnformat
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
Scanning dependencies of target unichemformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/unichemformat.dir/unichemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/unichemformat.cpp
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target thermoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/thermoformat.dir/thermoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/thermoformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp:562:32: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
snprintf(&buffer[12], 4, "%4d",res->GetNum()); }
^~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp:34:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/yasaraformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Built target yasaraformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pqrformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pqrformat.dir/pqrformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/unichemformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Built target unichemformat
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pointcloudformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pointcloudformat.dir/pointcloudformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:501:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
snprintf(type_name, sizeof(type_name), " %-3s", tmp);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:518:64: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
^~~~~~~ ~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 36%] Linking CXX shared module ../../lib/thermoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Built target thermoformat
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pdbqtformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/8/bits/stl_vector.h: In function 'bool OpenBabel::conditional_add(std::vector<OpenBabel::vector3>&, OpenBabel::vector3, double)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 37%] Linking CXX shared module ../../lib/pointcloudformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Built target pointcloudformat
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pcmodelformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pcmodelformat.dir/pcmodelformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pcmodelformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PQRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 37%] Linking CXX shared module ../../lib/pqrformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Built target pqrformat
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color=
Scanning dependencies of target outformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/outformat.dir/outformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/outformat.cpp
[ 37%] Linking CXX shared module ../lib/plugin_charges.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.o CMakeFiles/plugin_charges.dir/charges/gasteiger.o CMakeFiles/plugin_charges.dir/charges/none.o CMakeFiles/plugin_charges.dir/charges/mmff94.o CMakeFiles/plugin_charges.dir/charges/fromfile.o CMakeFiles/plugin_charges.dir/charges/eqeq.o CMakeFiles/plugin_charges.dir/charges/qeq.o CMakeFiles/plugin_charges.dir/charges/qtpie.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:334:46: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
snprintf(type_name, sizeof(type_name), " %-3s", tmp);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:351:54: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Linking CXX shared module ../../lib/pcmodelformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Built target pcmodelformat
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target msmsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/msmsformat.dir/msmsformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/msmsformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target plugin_charges
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
Scanning dependencies of target moldenformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp
[ 38%] Linking CXX shared module ../../lib/outformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target outformat
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mmcifformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmcifformat.cpp
[ 38%] Linking CXX shared module ../../lib/msmsformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target msmsformat
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target msiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/msiformat.dir/msiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/msiformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
[ 38%] Linking CXX shared module ../../lib/msiformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target msiformat
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
Scanning dependencies of target lmpdatformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmcifformat.cpp:19:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX shared module ../../lib/moldenformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target moldenformat
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mmodformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmodformat.cpp
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 38%] Linking CXX shared module ../../lib/pdbqtformat.so
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target pdbqtformat
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color=
Scanning dependencies of target groformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/groformat.dir/groformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/groformat.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 39%] Linking CXX shared module ../../lib/mmcifformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target mmcifformat
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:528:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
"%-4d %4d %4d %4d %4d %4d # %11s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:535:10:
DihedralString);
~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:510:10: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
"%-4d %4d %4d %4d %4d %4d # %11s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:517:10:
DihedralString);
~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:468:9: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
"%-4d %4d %4d %4d %4d # %8s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:474:9:
AngleString);
~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:452:9: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
"%-4d %4d %4d %4d %4d # %8s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:458:9:
AngleString);
~~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:415:9: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
"%-4d %4d %4d %4d # %5s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:420:9:
BondString);
~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:401:9: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
"%-4d %4d %4d %4d # %5s\n",
^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:406:9:
BondString);
~~~~~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Scanning dependencies of target molproformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 39%] Linking CXX shared module ../../lib/mmodformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target mmodformat
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target stlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/stlformat.dir/stlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp
[ 39%] Linking CXX shared module ../../lib/lmpdatformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target lmpdatformat
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color=
Scanning dependencies of target jaguarformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/jaguarformat.dir/jaguarformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/jaguarformat.cpp
[ 39%] Linking CXX shared module ../../lib/groformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target groformat
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target alchemyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/alchemyformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MolproOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp:28:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::Triangle; _Alloc = std::allocator<OpenBabel::Triangle>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::Triangle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp:28:
/usr/include/c++/8/bits/stl_vector.h: In function 'void OpenBabel::map_sphere(std::vector<OpenBabel::Triangle>&, OpenBabel::vector3, double, uint16_t)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../../lib/molproformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target molproformat
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gausszmatformat
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[ 39%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausszmatformat.cpp
[ 39%] Linking CXX shared module ../../lib/stlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
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[ 39%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessformat.dir/gamessformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp
[ 39%] Linking CXX shared module ../../lib/alchemyformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build
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make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
[ 39%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/daltonformat.dir/daltonformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/daltonformat.cpp
Scanning dependencies of target hinformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 40%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/hinformat.dir/hinformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/hinformat.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausszmatformat.cpp:16:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual bool OpenBabel::GaussianZMatrixInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/hinformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
Scanning dependencies of target balstformat
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target adfformat
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[ 40%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/adfformat.dir/adfformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/adfformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/chemtoolformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 40%] Built target chemtoolformat
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/opendxformat.cpp:24:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
Scanning dependencies of target pngformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 40%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pngformat.dir/pngformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pngformat.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/opendxformat.cpp:24:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBOpenDXCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/opendxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 40%] Built target opendxformat
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fhiaimsformat
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make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
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[ 41%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/adfformat.cpp:30:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator<OpenBabel::OBT41Format::AtomData>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBT41Format::AtomData>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp:15:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp:15:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::FHIaimsFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 42%] Linking CXX shared module ../../lib/pngformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pngformat.so CMakeFiles/pngformat.dir/pngformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 42%] Built target pngformat
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
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make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
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[ 42%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/boxformat.dir/boxformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/boxformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
Scanning dependencies of target viewmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 42%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/viewmolformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/adfformat.cpp:30:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 42%] Linking CXX shared module ../../lib/adfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 42%] Built target adfformat
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
Scanning dependencies of target abinitformat
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make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/abinitformat.dir/abinitformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp
[ 43%] Linking CXX shared module ../../lib/boxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 43%] Linking CXX shared module ../../lib/cssrformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessukformat.dir/gamessukformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp
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[ 44%] Built target cssrformat
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color=
Scanning dependencies of target posformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/posformat.dir/posformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/posformat.cpp
[ 45%] Linking CXX shared module ../../lib/viewmolformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 45%] Built target viewmolformat
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
Scanning dependencies of target lpmdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lpmdformat.dir/lpmdformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/abinitformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Linking CXX shared module ../../lib/posformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1
[ 46%] Built target abinitformat
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/posformat.so CMakeFiles/posformat.dir/posformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/aoforceformat.dir/aoforceformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target posformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
Scanning dependencies of target confabreport
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/confabreport.dir/confabreport.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp:15:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp:15:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesHessian(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesForce(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::AoforceFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)':
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::ConfabReport::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::__cxx11::string)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 46%] Linking CXX shared module ../../lib/aoforceformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target aoforceformat
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
/usr/include/c++/8/bits/stl_tree.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadLineCartesian(OpenBabel::OBAtom*, std::vector<std::__cxx11::basic_string<char> >&, double)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
Scanning dependencies of target dmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dmolformat.dir/dmolformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dmolformat.cpp
[ 46%] Linking CXX shared module ../../lib/confabreport.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/confabreport.so CMakeFiles/confabreport.dir/confabreport.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 46%] Built target confabreport
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pdbformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbformat.dir/pdbformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp
[ 46%] Linking CXX shared module ../../lib/gamessukformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target gamessukformat
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acesformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/acesformat.dir/acesformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp
[ 46%] Linking CXX shared module ../../lib/lpmdformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target lpmdformat
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
Scanning dependencies of target mol2format
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp
[ 46%] Linking CXX shared module ../../lib/dmolformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target dmolformat
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
Scanning dependencies of target nulformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nulformat.dir/nulformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nulformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:623:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
snprintf(type_name, sizeof(type_name), " %-3s", tmp);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:641:64: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
^~~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:678:34: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
snprintf(scharge, 3, "%+d", charge);
^~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767]
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/nulformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target nulformat
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mdlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::AcesOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:677:35: warning: '%-6s' directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=]
snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f",
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
atom->GetIdx(),label,
~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output 77 or more bytes (assuming 98361) into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:702:36: warning: '%2s' directive output may be truncated writing between 2 and 32767 bytes into a region of size between 32730 and 32747 [-Wformat-truncation=]
snprintf(buffer, BUFF_SIZE,"%6d %5d %5d %2s",
^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:704:18:
label);
~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 24 and 32806 bytes into a destination of size 32768
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Linking CXX shared module ../../lib/acesformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target acesformat
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target dlpolyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp
[ 47%] Linking CXX shared module ../../lib/pdbformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Built target pdbformat
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/titleformat.dir/titleformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/titleformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color=
Scanning dependencies of target textformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 48%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/textformat.dir/textformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/textformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp:14:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 48%] Linking CXX shared module ../../lib/titleformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/titleformat.so CMakeFiles/titleformat.dir/titleformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 48%] Built target titleformat
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cacaoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 48%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cacaoformat.cpp
[ 48%] Linking CXX shared module ../../lib/textformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/textformat.so CMakeFiles/textformat.dir/textformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp: In member function 'std::__cxx11::string OpenBabel::MDLFormat::GetTimeDate()':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:1652:22: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
^~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:1652:22: note: directive argument in the range [-2147483648, 2147483547]
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:30:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 48%] Built target textformat
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target copyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/copyformat.dir/copyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/copyformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp:14:
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 49%] Linking CXX shared module ../../lib/copyformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target copyformat
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gausscubeformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp
[ 49%] Linking CXX shared module ../../lib/cacaoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target cacaoformat
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mpqcformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpqcformat.dir/mpqcformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mpqcformat.cpp
[ 49%] Linking CXX shared module ../../lib/dlpolyformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target dlpolyformat
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mdffformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdffformat.dir/mdffformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp:28:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 49%] Linking CXX shared module ../../lib/mpqcformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target mpqcformat
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
Scanning dependencies of target freefracformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/freefracformat.dir/freefracformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/freefracformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp:28:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::atm_t_prop; _Alloc = std::allocator<OpenBabel::atm_t_prop>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<OpenBabel::atm_t_prop>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::atm_t_prop*, std::vector<OpenBabel::atm_t_prop> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::atm_t_prop*, std::vector<OpenBabel::atm_t_prop> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/mdlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 50%] Built target mdlformat
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
Scanning dependencies of target smileyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 50%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smileyformat.dir/smileyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smileyformat.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX shared module ../../lib/freefracformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/8/bits/stl_tree.h: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/MNAformat.dir/MNAformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MNAformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/commandpainter.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xyzformat.dir/xyzformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xyzformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color=
Scanning dependencies of target crystal09format
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[ 52%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/crystal09format.dir/crystal09format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crystal09format.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
Scanning dependencies of target PQSformat
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[ 53%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/PQSformat.dir/PQSformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/PQSformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 53%] Linking CXX shared module ../../lib/xyzformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 53%] Built target xyzformat
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::Crystal09Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
Scanning dependencies of target mpdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 53%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpdformat.dir/mpdformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mpdformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
Scanning dependencies of target svgformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/svgformat.dir/svgformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/svgformat.cpp
[ 54%] Linking CXX shared module ../../lib/PQSformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
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[ 55%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/povrayformat.dir/povrayformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/povrayformat.cpp
[ 56%] Linking CXX shared module ../../lib/crystal09format.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/inchiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/inchiformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/reportformat.dir/reportformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/reportformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/svgformat.so CMakeFiles/svgformat.dir/svgformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 58%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/getinchi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/getinchi.cpp
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
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[ 58%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mopacformat.dir/mopacformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp
[ 58%] Linking CXX shared module ../../lib/reportformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/reportformat.so CMakeFiles/reportformat.dir/reportformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 58%] Built target reportformat
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
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[ 58%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gromos96format.cpp
[ 58%] Linking CXX shared module ../../lib/povrayformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target povrayformat
[ 58%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/__/ops/unique.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/unique.cpp
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color=
[ 58%] Linking CXX shared module ../../lib/gromos96format.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
Scanning dependencies of target MCDLformat
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make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/MCDLformat.dir/MCDLformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target gromos96format
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
Scanning dependencies of target nwchemformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 59%] Linking CXX shared module ../../lib/inchiformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 59%] Built target inchiformat
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
Scanning dependencies of target pubchem
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 59%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp: In member function 'std::__cxx11::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp:209:30: warning: '%s' directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=]
sprintf(line,"%s%d",semis,icons[j]);
^~~~~~ ~~~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 111 bytes into a destination of size 82
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PubChemFormat::DoElement(const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PubChemFormat::EndElement(const string&)':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
[ 59%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
[ 59%] Linking CXX shared module ../../lib/mopacformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target shelxformat
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[ 59%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/shelxformat.dir/shelxformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/shelxformat.cpp
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadTDDFTCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 60%] Linking CXX shared module ../../lib/pubchem.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 60%] Linking CXX shared module ../../lib/shelxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadGeometryOptimizationCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
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^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
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make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/qchemformat.dir/qchemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp
[ 61%] Linking CXX shared module ../../lib/cccformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 61%] Built target cccformat
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target siestaformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/siestaformat.dir/siestaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/siestaformat.cpp
[ 62%] Linking CXX shared module ../../lib/pwscfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fchkformat
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make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fchkformat.dir/fchkformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fchkformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 62%] Linking CXX shared module ../../lib/qchemformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fchkformat.cpp:21:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Built target qchemformat
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xsfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xsfformat.dir/xsfformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fchkformat.cpp:21:
/usr/include/c++/8/bits/stl_vector.h: In static member function 'static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/MCDLformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
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[ 63%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/carformat.dir/carformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/carformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/tinkerformat.dir/tinkerformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/tinkerformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/xsfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Built target xsfformat
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target asciiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/asciiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/asciiformat.cpp
[ 63%] Linking CXX shared module ../../lib/carformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 64%] Linking CXX shared module ../../lib/fchkformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1
[ 64%] Built target carformat
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
Scanning dependencies of target turbomoleformat
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make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 64%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o
[ 65%] Linking CXX shared module ../../lib/tinkerformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/turbomoleformat.dir/turbomoleformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/turbomoleformat.cpp
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 65%] Built target fchkformat
[ 66%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/asciipainter.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target tinkerformat
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acrformat
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make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/acrformat.dir/acrformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acrformat.cpp
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rsmiformat
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make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/rsmiformat.dir/rsmiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/rsmiformat.cpp
[ 66%] Linking CXX shared module ../../lib/asciiformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target asciiformat
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gaussformat
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make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gaussformat.dir/gaussformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp
[ 66%] Linking CXX shared module ../../lib/turbomoleformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target turbomoleformat
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
Scanning dependencies of target vaspformat
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make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/vaspformat.dir/vaspformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp
[ 67%] Linking CXX shared module ../../lib/acrformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acrformat.so CMakeFiles/acrformat.dir/acrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target zindoformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/zindoformat.dir/zindoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/zindoformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 68%] Linking CXX shared module ../../lib/zindoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 68%] Built target zindoformat
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target orcaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 68%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/orcaformat.dir/orcaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator<OpenBabel::matrix3x3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator<OpenBabel::matrix3x3>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/rsmiformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Built target rsmiformat
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
Scanning dependencies of target chemkinformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemkinformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/stl_vector.h:867:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
^~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemkinformat.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX shared module ../../lib/vaspformat.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/8/bits/stl_tree.h: In member function 'bool OpenBabel::ChemKinFormat::ReadReactionQualifierLines(std::istream&, OpenBabel::OBReaction*)':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 72%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fhformat.dir/fhformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhformat.cpp
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gulpformat.cpp
[ 72%] Linking CXX shared module ../../lib/chemkinformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/CSRformat.dir/CSRformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/amberformat.dir/amberformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/amberformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
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[ 73%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chem3dformat.dir/chem3dformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp
[ 73%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/castepformat.dir/castepformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/castepformat.cpp
[ 73%] Linking CXX shared module ../../lib/amberformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemdrawct.cpp
In file included from /usr/include/c++/8/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cifformat.cpp:20:
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:2207:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:298:51: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=]
snprintf(type_name, sizeof(type_num), "%d",type_num);
^~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461]
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:64:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 4
return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_tree.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
/usr/include/c++/8/bits/stl_tree.h: In member function 'void OpenBabel::CIFData::ExtractCharges()':
/usr/include/c++/8/bits/stl_tree.h:1088:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
return _M_insert_unique_(__pos, __x, __an);
^
[ 75%] Linking CXX shared module ../../lib/castepformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/ghemicalformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fingerprintformat.dir/fingerprintformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fingerprintformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cacheformat.dir/cacheformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cacheformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/exyzformat.dir/exyzformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/exyzformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xedformat.dir/xedformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xedformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
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[ 77%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smilesformat.dir/smilesformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fastaformat
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make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 77%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastaformat.dir/fastaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastaformat.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX shared module ../../lib/exyzformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Built target exyzformat
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/featformat.dir/featformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/featformat.cpp
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/8/bits/stl_vector.h: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector<OpenBabel::OBMol>&, OpenBabel::OBMol, int)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'bool OpenBabel::FastSearchFormat::ObtainTarget(OpenBabel::OBConversion*, std::vector<OpenBabel::OBMol>&, const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function 'virtual bool OpenBabel::FastSearchFormat::ReadChemObject(OpenBabel::OBConversion*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 78%] Linking CXX shared module ../../lib/fastaformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Built target fastaformat
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fpsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fpsformat.dir/fpsformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fpsformat.cpp
[ 78%] Linking CXX shared module ../../lib/featformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Built target featformat
make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color=
Scanning dependencies of target obspectrophore
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obspectrophore.dir/obspectrophore.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obspectrophore.cpp
[ 78%] Linking CXX shared module ../../lib/fastsearchformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Built target fastsearchformat
make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrms.dir/DependInfo.cmake --color=
Scanning dependencies of target obrms
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 78%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrms.dir/obrms.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrms.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:2989:19: warning: '%d' directive writing between 1 and 5 bytes into a region of size 4 [-Wformat-overflow=]
sprintf(iso,"%d",atom->GetIsotope());
^~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:2989:19: note: directive argument in the range [1, 65535]
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 4
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:3037:26: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(tcount,"%d", hcount);
^~~~
In file included from /usr/include/stdio.h:862,
from /usr/include/c++/8/cstdio:42,
from /usr/include/c++/8/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:33:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__bos (__s), __fmt, __va_arg_pack ());
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX executable ../bin/obrms
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrms.dir/obrms.o -o ../bin/obrms ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
[ 79%] Linking CXX shared module ../../lib/fpsformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 79%] Built target obrms
make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obfit.dir/DependInfo.cmake --color=
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[ 80%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obfit.dir/obfit.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obfit.cpp
[ 80%] Built target fpsformat
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
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[ 80%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obenergy.dir/obenergy.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obenergy.cpp
[ 80%] Linking CXX executable ../bin/obspectrophore
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 80%] Built target obspectrophore
make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color=
Scanning dependencies of target obgrep
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make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build
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[ 80%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgrep.dir/obgrep.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obgrep.cpp
[ 80%] Linking CXX executable ../bin/obenergy
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obenergy.dir/obenergy.o -o ../bin/obenergy ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color=
Scanning dependencies of target obrotamer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 80%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotamer.dir/obrotamer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrotamer.cpp
[ 80%] Linking CXX executable ../bin/obfit
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obfit.dir/obfit.o -o ../bin/obfit ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --color=
Scanning dependencies of target obchiral
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 80%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obchiral.dir/obchiral.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obchiral.cpp
[ 81%] Linking CXX executable ../bin/obgrep
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
Scanning dependencies of target obconformer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obconformer.dir/obconformer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obconformer.cpp
[ 82%] Linking CXX executable ../bin/obrotamer
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrotamer.dir/obrotamer.o -o ../bin/obrotamer ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Built target obrotamer
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
Scanning dependencies of target obprobe
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build
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[ 82%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obprobe.dir/obprobe.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obprobe.cpp
[ 82%] Linking CXX executable ../bin/obchiral
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obchiral.dir/obchiral.o -o ../bin/obchiral ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Built target obchiral
make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --color=
Scanning dependencies of target obtautomer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obtautomer.dir/obtautomer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obtautomer.cpp
[ 82%] Linking CXX executable ../bin/obconformer
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obconformer.dir/obconformer.o -o ../bin/obconformer ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Built target obconformer
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color=
Scanning dependencies of target obabel
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 82%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obabel.dir/obabel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:104:29: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
<< __DATE__ << " -- " << __TIME__ << endl;
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:104:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
<< __DATE__ << " -- " << __TIME__ << endl;
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:411:55: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- "
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:412:11: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
<< __TIME__ << endl;
^~~~~~~~
[ 82%] Linking CXX executable ../bin/obprobe
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
[ 82%] Linking CXX executable ../bin/obtautomer
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 82%] Built target obprobe
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
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[ 82%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obthermo.dir/obthermo.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obthermo.cpp
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color=
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[ 82%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgen.dir/obgen.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obgen.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/babel.dir/DependInfo.cmake --color=
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[ 82%] Building CXX object tools/CMakeFiles/babel.dir/babel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/babel.dir/babel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:107:29: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
<< __DATE__ << " -- " << __TIME__ << endl;
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:107:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
<< __DATE__ << " -- " << __TIME__ << endl;
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:422:55: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- "
^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:423:11: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
<< __TIME__ << endl;
^~~~~~~~
[ 82%] Linking CXX shared module ../../lib/smilesformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 83%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obminimize.dir/obminimize.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obminimize.cpp
[ 83%] Linking CXX executable ../bin/obthermo
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obthermo.dir/obthermo.o -o ../bin/obthermo ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color=
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[ 84%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotate.dir/obrotate.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrotate.cpp
[ 84%] Linking CXX executable ../bin/obgen
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgen.dir/obgen.o -o ../bin/obgen ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color=
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[ 84%] Linking CXX executable ../bin/babel
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[ 84%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obprop.dir/obprop.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obprop.cpp
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/babel.dir/babel.o -o ../bin/babel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 84%] Built target babel
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obsym.dir/obsym.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obsym.cpp
[ 84%] Linking CXX executable ../bin/obminimize
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obminimize.dir/obminimize.o -o ../bin/obminimize ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obdistgen.dir/obdistgen.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obdistgen.cpp
[ 84%] Linking CXX executable ../bin/obrotate
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color=
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obsym.dir/obsym.o -o ../bin/obsym ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color=
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[ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/inchiwrite.cpp
[ 87%] Linking CXX executable ../bin/obprop
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/OBGUI.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/OBGUI.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_runner.dir/DependInfo.cmake --color=
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[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/test_runner.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/test_runner.cpp
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/aligntest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp
[ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/getinchi.cpp
[ 87%] Linking CXX executable ../bin/obdistgen
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obdistgen.dir/obdistgen.o -o ../bin/obdistgen ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 87%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/roundtrip.dir/roundtrip.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/roundtrip.cpp
[ 87%] Linking CXX executable ../bin/test_inchiwrite
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o ../bin/test_inchiwrite ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Built target test_inchiwrite
[ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/stdwx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/stdwx.cpp
[ 87%] Linking CXX executable ../bin/roundtrip
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/roundtrip.dir/roundtrip.o -o ../bin/roundtrip ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Built target roundtrip
[ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/optswx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/optswx.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'void test_bug()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void test_simpleAlign()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void test_QCP()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/automorphismtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/automorphismtest.cpp
make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake --color=
Scanning dependencies of target bindings_perl
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make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_perl_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/python2.7 -I/usr/lib/arm-linux-gnueabihf/perl/5.28/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/buildertest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/buildertest.cpp
make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color=
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/canonconsistenttest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/canonconsistenttest.cpp
Scanning dependencies of target bindings_python
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[ 88%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_python_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/python2.7 -I/usr/lib/arm-linux-gnueabihf/perl/5.28/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp
[ 88%] Linking CXX executable ../../bin/obgui
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgui.dir/OBGUI.o CMakeFiles/obgui.dir/stdwx.o CMakeFiles/obgui.dir/optswx.o -o ../../bin/obgui ../../lib/libopenbabel.so.5.0.0 -L/usr/lib/arm-linux-gnueabihf -pthread -lwx_baseu-3.0 -lwx_gtk2u_core-3.0 -lwx_gtk2u_adv-3.0 -lm -ldl -lz
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/canonstabletest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/canonstabletest.cpp
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[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/carspacegrouptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/carspacegrouptest.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cifspacegrouptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cifspacegrouptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cistranstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cistranstest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/graphsymtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/graphsymtest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/gziptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/gziptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/implicitHtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/implicitHtest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/lssrtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/lssrtest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/isomorphismtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/isomorphismtest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/multicmltest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/multicmltest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/regressionstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/regressionstest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/rotortest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/shuffletest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/shuffletest.cpp
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp:1:
/usr/include/c++/8/bits/stl_vector.h: In function 'void testOBRotorGetSet()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void testOBRotorSetRotor()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smilestest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smilestest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/spectrophoretest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/spectrophoretest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/squareplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/squareplanartest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/stereotest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/stereotest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/stereoperceptiontest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/stereoperceptiontest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tautomertest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tautomertest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetrahedraltest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetrahedraltest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetranonplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetranonplanartest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetraplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetraplanartest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/uniqueidtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/uniqueidtest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/aromatest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aromatest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/atom.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/atom.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/atom.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/bond.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/bond.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/bond.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cansmi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cansmi.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/charge_mmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/charge_mmff94.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/charge_gasteiger.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/charge_gasteiger.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/conversion.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/conversion.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/datatest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/datatest.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffgaff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffgaff.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffghemical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffghemical.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffmmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffmmff94.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffuff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffuff.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/formalcharge.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/formalcharge.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/format.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formula.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/formula.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/formula.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/internalcoord.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/internalcoord.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/invalidsmarts.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/invalidsmarts.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/invalidsmiles.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/invalidsmiles.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/iterators.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/iterators.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/logp_psa.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/logp_psa.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/math.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/math.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/mol.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/mol.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/phmodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/phmodel.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/residue.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/residue.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ringtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ringtest.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smartstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smartstest.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smartsparse.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smartsparse.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smilesmatch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smilesmatch.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/unitcell.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/unitcell.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cmlreadfile.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cmlreadfile.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/obtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.cpp
[ 99%] Linking CXX executable ../bin/test_runner
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_runner.dir/test_runner.o CMakeFiles/test_runner.dir/aligntest.o CMakeFiles/test_runner.dir/automorphismtest.o CMakeFiles/test_runner.dir/buildertest.o CMakeFiles/test_runner.dir/canonconsistenttest.o CMakeFiles/test_runner.dir/canonstabletest.o CMakeFiles/test_runner.dir/carspacegrouptest.o CMakeFiles/test_runner.dir/cifspacegrouptest.o CMakeFiles/test_runner.dir/cistranstest.o CMakeFiles/test_runner.dir/graphsymtest.o CMakeFiles/test_runner.dir/gziptest.o CMakeFiles/test_runner.dir/implicitHtest.o CMakeFiles/test_runner.dir/lssrtest.o CMakeFiles/test_runner.dir/isomorphismtest.o CMakeFiles/test_runner.dir/multicmltest.o CMakeFiles/test_runner.dir/regressionstest.o CMakeFiles/test_runner.dir/rotortest.o CMakeFiles/test_runner.dir/shuffletest.o CMakeFiles/test_runner.dir/smilestest.o CMakeFiles/test_runner.dir/spectrophoretest.o CMakeFiles/test_runner.dir/squareplanartest.o CMakeFiles/test_runner.dir/stereotest.o CMakeFiles/test_runner.dir/stereoperceptiontest.o CMakeFiles/test_runner.dir/tautomertest.o CMakeFiles/test_runner.dir/tetrahedraltest.o CMakeFiles/test_runner.dir/tetranonplanartest.o CMakeFiles/test_runner.dir/tetraplanartest.o CMakeFiles/test_runner.dir/uniqueidtest.o CMakeFiles/test_runner.dir/aromatest.o CMakeFiles/test_runner.dir/atom.o CMakeFiles/test_runner.dir/bond.o CMakeFiles/test_runner.dir/cansmi.o CMakeFiles/test_runner.dir/charge_mmff94.o CMakeFiles/test_runner.dir/charge_gasteiger.o CMakeFiles/test_runner.dir/conversion.o CMakeFiles/test_runner.dir/datatest.o CMakeFiles/test_runner.dir/ffgaff.o CMakeFiles/test_runner.dir/ffghemical.o CMakeFiles/test_runner.dir/ffmmff94.o CMakeFiles/test_runner.dir/ffuff.o CMakeFiles/test_runner.dir/formalcharge.o CMakeFiles/test_runner.dir/format.o CMakeFiles/test_runner.dir/formula.o CMakeFiles/test_runner.dir/internalcoord.o CMakeFiles/test_runner.dir/invalidsmarts.o CMakeFiles/test_runner.dir/invalidsmiles.o CMakeFiles/test_runner.dir/iterators.o CMakeFiles/test_runner.dir/logp_psa.o CMakeFiles/test_runner.dir/math.o CMakeFiles/test_runner.dir/mol.o CMakeFiles/test_runner.dir/phmodel.o CMakeFiles/test_runner.dir/residue.o CMakeFiles/test_runner.dir/ringtest.o CMakeFiles/test_runner.dir/smartstest.o CMakeFiles/test_runner.dir/smartsparse.o CMakeFiles/test_runner.dir/smilesmatch.o CMakeFiles/test_runner.dir/unitcell.o CMakeFiles/test_runner.dir/cmlreadfile.o CMakeFiles/test_runner.dir/obtest.o -o ../bin/test_runner ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 99%] Built target test_runner
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:172:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_OBMol_Sg____setitem____SWIG_1(std::vector<OpenBabel::OBMol>*, PySliceObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_vector3_Sg____setitem____SWIG_1(std::vector<OpenBabel::vector3>*, PySliceObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'void std_vector_Sl_double_Sg____setitem____SWIG_1(std::vector<double>*, PySliceObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delslice__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delslice__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delslice__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___getitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___getitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1321:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__position); }
^
/usr/include/c++/8/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___getitem__(PyObject*, PyObject*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]':
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]':
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/8/bits/stl_vector.h:1352:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
{ return _M_erase(__first, __last); }
^
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
^~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/8/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<double>; T = double]':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBElectronicTransitionData_SetEDipole(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBElectronicTransitionData_SetRotatoryStrengthsVelocity(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBGridData_SetValues(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBElectronicTransitionData_SetRotatoryStrengthsLength(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBFFParameter__dpar_set(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBConformerData_SetEnergies(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBRotationData_SetData(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBElectronicTransitionData_SetData(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBDOSData_SetData(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_new_vectorDouble(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBOrbitalData_LoadAlphaOrbitals(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBOrbitalData_LoadBetaOrbitals(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBOrbitalData_LoadClosedShellOrbitals(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<OpenBabel::vector3>; T = OpenBabel::vector3]':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBAlign_SetRef(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBAlign_SetTarget(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'swig::SwigPySequence_Ref<T>::operator T() const [with T = std::vector<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'PyObject* _wrap_OBVibrationData_SetData(PyObject*, PyObject*)':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont<OpenBabel::OBMol>; Seq = std::vector<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:151:2: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
_M_realloc_insert(__position, __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBConformerData_SetEnergies(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_VectorDouble_size(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBRotationData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_new_VectorDouble__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBFFParameter__dpar_set(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBGridData_SetValues(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetEDipole(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetRotatoryStrengthsVelocity(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetRotatoryStrengthsLength(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBVibrationData_SetData__SWIG_0(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBDOSData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBVibrationData_SetData__SWIG_1(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_new_VectorVector3__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_VectorVector3_size(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/8/bits/vector.tcc:418:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_new_VectorOBMol__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_VectorOBMol_size(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadClosedShellOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadAlphaOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadBetaOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
[100%] Linking CXX shared module ../lib/_openbabel.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -lpython2.7 ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[100%] Built target bindings_python
[100%] Linking CXX shared module ../lib/OpenBabel.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_perl.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/OpenBabel.so CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o /usr/lib/arm-linux-gnueabihf/libperl.so.5.28 ../lib/libopenbabel.so.5.0.0 -ldl -lm -lpthread -lc -lcrypt -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles 0
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/doc /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/doc /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/doc/CMakeFiles/docs.dir/DependInfo.cmake --color=
Scanning dependencies of target docs
make[5]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f doc/CMakeFiles/docs.dir/build.make doc/CMakeFiles/docs.dir/build
make[5]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg && /usr/bin/doxygen /<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile
warning: Tag `SYMBOL_CACHE_SIZE' at line 336 of file `/<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `XML_SCHEMA' at line 1422 of file `/<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag `XML_DTD' at line 1428 of file `/<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetraplanar.h:38: warning: multiple use of section label 'Combinations' while adding section, (first occurrence: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h, line 41)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/bitvec.cpp:402: warning: documented symbol `OBBitVec & operator &=' was not declared or defined.
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:332: warning: documented symbol `int DiverseConfGen' was not declared or defined.
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp:957: warning: no matching file member found for
bool expand_kekulize_lssr(OpenBabel::OBMol *mol, std::vector< int > &atomState, std::vector< int > &bondState, std::vector< OpenBabel::OBRing * > &lssr, std::vector< bool > &lssrAssigned, std::vector< OBBond * > &bondsThisRing)
Possible candidates:
'bool expand_kekulize_lssr(OBMol *mol, std::vector< int > &atomState, std::vector< int > &bondState, std::vector< OBRing *> &lssr, std::vector< bool > &lssrAssigned, std::vector< OBBond *> &bondsThisRing)' at line 100 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp:439: warning: no matching file member found for
void InternalToCartesian(std::vector< OpenBabel::OBInternalCoord * > &vic, OBMol &mol)
Possible candidates:
'void InternalToCartesian(std::vector< OBInternalCoord *> &, OBMol &)' at line 742 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp:542: warning: no matching file member found for
void CartesianToInternal(std::vector< OpenBabel::OBInternalCoord * > &vic, OBMol &mol)
Possible candidates:
'void CartesianToInternal(std::vector< OBInternalCoord *> &, OBMol &)' at line 740 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:55: warning: The following parameters of OpenBabel::extract_thermochemistry(OpenBabel::OBMol &mol, bool bVerbose, int *Nsymm, int Nrotbonds, double dbdt, double *temperature, double *DeltaHf0, double *DeltaHfT, double *DeltaGfT, double *DeltaSfT, double *S0T, double *CVT, double *CPT, std::vector< double > &Scomponents) are not documented:
parameter 'Nrotbonds'
parameter 'dbdt'
parameter 'CPT'
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:314: warning: argument 'Unnamed' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::ParseLine(const char *line)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:317: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char *line) are not documented:
parameter 'line'
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:318: warning: argument 'dhof1' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:330: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T) are not documented:
parameter 'dhofT'
sh: 1: latex: not found
error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
sh: 1: dvips: not found
error: Problems running dvips. Check your installation!
make[5]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
Built target docs
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make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
BABEL_LIBDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib \
LD_LIBRARY_PATH=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib \
dh_auto_test
cd builddir && make V=1 -j4 test ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
Start 1: test_align_1
Start 2: test_align_2
Start 3: test_align_3
Start 4: test_align_4
1/160 Test #3: test_align_3 ..................... Passed 0.14 sec
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2/160 Test #1: test_align_1 ..................... Passed 0.29 sec
Start 6: test_automorphism_1
3/160 Test #2: test_align_2 ..................... Passed 0.22 sec
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4/160 Test #7: test_automorphism_2 .............. Passed 15.35 sec
Start 8: test_automorphism_3
5/160 Test #6: test_automorphism_1 .............. Passed 15.67 sec
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6/160 Test #4: test_align_4 ..................... Passed 16.09 sec
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7/160 Test #5: test_align_5 ..................... Passed 15.93 sec
Start 11: test_automorphism_6
8/160 Test #8: test_automorphism_3 .............. Passed 0.68 sec
Start 12: test_automorphism_7
9/160 Test #9: test_automorphism_4 .............. Passed 0.67 sec
Start 13: test_automorphism_8
10/160 Test #11: test_automorphism_6 .............. Passed 0.86 sec
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11/160 Test #10: test_automorphism_5 .............. Passed 0.88 sec
Start 15: test_automorphism_10
12/160 Test #12: test_automorphism_7 .............. Passed 0.86 sec
Start 16: test_builder_1
13/160 Test #13: test_automorphism_8 .............. Passed 0.93 sec
Start 17: test_builder_2
14/160 Test #14: test_automorphism_9 .............. Passed 0.64 sec
Start 18: test_builder_3
15/160 Test #15: test_automorphism_10 ............. Passed 0.82 sec
Start 19: test_builder_4
16/160 Test #19: test_builder_4 ................... Passed 2.10 sec
Start 20: test_builder_5
17/160 Test #18: test_builder_3 ................... Passed 2.37 sec
Start 21: test_canonconsistent_1
18/160 Test #20: test_builder_5 ................... Passed 2.09 sec
Start 22: test_canonconsistent_2
19/160 Test #22: test_canonconsistent_2 ........... Passed 0.60 sec
Start 23: test_canonconsistent_3
20/160 Test #21: test_canonconsistent_1 ........... Passed 3.77 sec
Start 24: test_canonstable_1
21/160 Test #23: test_canonconsistent_3 ........... Passed 1.23 sec
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22/160 Test #25: test_carspacegroup_1 ............. Passed 0.82 sec
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23/160 Test #26: test_carspacegroup_2 ............. Passed 5.54 sec
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24/160 Test #27: test_carspacegroup_3 ............. Passed 5.57 sec
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25/160 Test #28: test_carspacegroup_4 ............. Passed 5.07 sec
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26/160 Test #29: test_cifspacegroup_1 ............. Passed 4.65 sec
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27/160 Test #30: test_cifspacegroup_2 ............. Passed 4.83 sec
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28/160 Test #31: test_cifspacegroup_3 ............. Passed 0.13 sec
Start 32: test_cifspacegroup_4
29/160 Test #32: test_cifspacegroup_4 ............. Passed 5.62 sec
Start 33: test_cistrans_1
30/160 Test #33: test_cistrans_1 .................. Passed 0.06 sec
Start 34: test_cistrans_2
31/160 Test #34: test_cistrans_2 .................. Passed 0.08 sec
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32/160 Test #35: test_cistrans_3 .................. Passed 0.09 sec
Start 36: test_cistrans_4
33/160 Test #36: test_cistrans_4 .................. Passed 0.08 sec
Start 37: test_cistrans_5
34/160 Test #37: test_cistrans_5 .................. Passed 0.10 sec
Start 38: test_cistrans_6
35/160 Test #38: test_cistrans_6 .................. Passed 0.67 sec
Start 39: test_cistrans_7
36/160 Test #39: test_cistrans_7 .................. Passed 0.61 sec
Start 40: test_cistrans_8
37/160 Test #40: test_cistrans_8 .................. Passed 0.90 sec
Start 41: test_cistrans_9
38/160 Test #41: test_cistrans_9 .................. Passed 0.74 sec
Start 42: test_graphsym_1
39/160 Test #42: test_graphsym_1 .................. Passed 0.83 sec
Start 43: test_graphsym_2
40/160 Test #43: test_graphsym_2 .................. Passed 0.58 sec
Start 44: test_graphsym_3
41/160 Test #44: test_graphsym_3 .................. Passed 1.13 sec
Start 45: test_graphsym_4
42/160 Test #45: test_graphsym_4 .................. Passed 1.16 sec
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43/160 Test #46: test_graphsym_5 .................. Passed 1.11 sec
Start 47: test_gzip_1
44/160 Test #47: test_gzip_1 ...................... Passed 3.67 sec
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45/160 Test #48: test_implicitH_1 ................. Passed 1.03 sec
Start 49: test_lssr_1
46/160 Test #49: test_lssr_1 ...................... Passed 1.94 sec
Start 50: test_lssr_2
47/160 Test #17: test_builder_2 ................... Passed 63.11 sec
Start 51: test_lssr_3
48/160 Test #51: test_lssr_3 ...................... Passed 10.38 sec
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49/160 Test #52: test_lssr_4 ...................... Passed 9.03 sec
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50/160 Test #53: test_lssr_5 ...................... Passed 1.08 sec
Start 54: test_isomorphism_1
51/160 Test #54: test_isomorphism_1 ............... Passed 1.06 sec
Start 55: test_isomorphism_2
52/160 Test #50: test_lssr_2 ...................... Passed 31.49 sec
Start 56: test_isomorphism_3
53/160 Test #55: test_isomorphism_2 ............... Passed 0.70 sec
Start 57: test_isomorphism_4
54/160 Test #56: test_isomorphism_3 ............... Passed 0.67 sec
Start 58: test_isomorphism_5
55/160 Test #57: test_isomorphism_4 ............... Passed 0.64 sec
Start 59: test_isomorphism_6
56/160 Test #58: test_isomorphism_5 ............... Passed 0.93 sec
Start 60: test_isomorphism_7
57/160 Test #59: test_isomorphism_6 ............... Passed 1.01 sec
Start 61: test_isomorphism_8
58/160 Test #61: test_isomorphism_8 ............... Passed 0.61 sec
Start 62: test_multicml_1
59/160 Test #60: test_isomorphism_7 ............... Passed 1.48 sec
Start 63: test_regressions_1
60/160 Test #62: test_multicml_1 .................. Passed 0.62 sec
Start 64: test_regressions_221
61/160 Test #24: test_canonstable_1 ............... Passed 155.86 sec
Start 65: test_regressions_222
62/160 Test #65: test_regressions_222 ............. Passed 0.73 sec
Start 66: test_regressions_223
63/160 Test #66: test_regressions_223 ............. Passed 1.46 sec
Start 67: test_regressions_224
64/160 Test #67: test_regressions_224 ............. Passed 0.70 sec
Start 68: test_rotor_1
65/160 Test #68: test_rotor_1 ..................... Passed 0.06 sec
Start 69: test_rotor_2
66/160 Test #69: test_rotor_2 ..................... Passed 0.86 sec
Start 70: test_rotor_3
67/160 Test #70: test_rotor_3 ..................... Passed 0.78 sec
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68/160 Test #71: test_rotor_4 ..................... Passed 0.99 sec
Start 72: test_shuffle_1
69/160 Test #72: test_shuffle_1 ................... Passed 5.21 sec
Start 73: test_shuffle_2
70/160 Test #16: test_builder_1 ................... Passed 175.02 sec
Start 74: test_shuffle_3
71/160 Test #74: test_shuffle_3 ................... Passed 2.80 sec
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72/160 Test #75: test_shuffle_4 ................... Passed 1.04 sec
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73/160 Test #73: test_shuffle_2 ................... Passed 7.08 sec
Start 77: test_smiles_1
74/160 Test #77: test_smiles_1 .................... Passed 0.61 sec
Start 78: test_smiles_2
75/160 Test #76: test_shuffle_5 ................... Passed 2.69 sec
Start 79: test_smiles_3
76/160 Test #78: test_smiles_2 .................... Passed 0.59 sec
Start 80: test_spectrophore_1
77/160 Test #79: test_smiles_3 .................... Passed 0.74 sec
Start 81: test_spectrophore_2
78/160 Test #81: test_spectrophore_2 .............. Passed 0.45 sec
Start 82: test_spectrophore_3
79/160 Test #82: test_spectrophore_3 .............. Passed 0.40 sec
Start 83: test_spectrophore_4
80/160 Test #83: test_spectrophore_4 .............. Passed 0.44 sec
Start 84: test_spectrophore_5
81/160 Test #84: test_spectrophore_5 .............. Passed 0.32 sec
Start 85: test_squareplanar_1
82/160 Test #85: test_squareplanar_1 .............. Passed 0.07 sec
Start 86: test_squareplanar_2
83/160 Test #86: test_squareplanar_2 .............. Passed 0.06 sec
Start 87: test_squareplanar_3
84/160 Test #87: test_squareplanar_3 .............. Passed 0.06 sec
Start 88: test_squareplanar_4
85/160 Test #88: test_squareplanar_4 .............. Passed 0.07 sec
Start 89: test_squareplanar_5
86/160 Test #89: test_squareplanar_5 .............. Passed 0.05 sec
Start 90: test_stereo_1
87/160 Test #90: test_stereo_1 .................... Passed 0.05 sec
Start 91: test_stereo_2
88/160 Test #91: test_stereo_2 .................... Passed 0.07 sec
Start 92: test_stereo_3
89/160 Test #92: test_stereo_3 .................... Passed 0.06 sec
Start 93: test_stereo_4
90/160 Test #93: test_stereo_4 .................... Passed 0.06 sec
Start 94: test_stereo_5
91/160 Test #94: test_stereo_5 .................... Passed 0.06 sec
Start 95: test_stereo_6
92/160 Test #95: test_stereo_6 .................... Passed 3.07 sec
Start 96: test_stereoperception_1
93/160 Test #80: test_spectrophore_1 .............. Passed 6.16 sec
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94/160 Test #96: test_stereoperception_1 .......... Passed 0.52 sec
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95/160 Test #97: test_stereoperception_2 .......... Passed 0.82 sec
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96/160 Test #98: test_stereoperception_3 .......... Passed 0.64 sec
Start 100: test_tautomer_1
97/160 Test #99: test_stereoperception_4 .......... Passed 0.60 sec
Start 101: test_tautomer_2
98/160 Test #100: test_tautomer_1 .................. Passed 0.69 sec
Start 102: test_tetrahedral_1
99/160 Test #102: test_tetrahedral_1 ............... Passed 0.10 sec
Start 103: test_tetrahedral_2
100/160 Test #103: test_tetrahedral_2 ............... Passed 0.10 sec
Start 104: test_tetrahedral_3
101/160 Test #104: test_tetrahedral_3 ............... Passed 0.10 sec
Start 105: test_tetrahedral_4
102/160 Test #105: test_tetrahedral_4 ............... Passed 0.06 sec
Start 106: test_tetrahedral_5
103/160 Test #106: test_tetrahedral_5 ............... Passed 0.11 sec
Start 107: test_tetranonplanar_1
104/160 Test #101: test_tautomer_2 .................. Passed 0.80 sec
Start 108: test_tetraplanar_1
105/160 Test #107: test_tetranonplanar_1 ............ Passed 0.08 sec
Start 109: test_uniqueid_1
106/160 Test #108: test_tetraplanar_1 ............... Passed 0.07 sec
Start 110: test_uniqueid_2
107/160 Test #109: test_uniqueid_1 .................. Passed 0.07 sec
Start 111: test_aromatest_1
108/160 Test #110: test_uniqueid_2 .................. Passed 0.07 sec
Start 112: test_atom_1
109/160 Test #112: test_atom_1 ...................... Passed 0.06 sec
Start 113: test_atom_2
110/160 Test #113: test_atom_2 ...................... Passed 0.07 sec
Start 114: test_atom_3
111/160 Test #114: test_atom_3 ...................... Passed 0.09 sec
Start 115: test_atom_4
112/160 Test #115: test_atom_4 ...................... Passed 0.05 sec
Start 116: test_bond_1
113/160 Test #116: test_bond_1 ...................... Passed 0.05 sec
Start 117: test_cansmi_1
114/160 Test #111: test_aromatest_1 ................. Passed 0.68 sec
Start 118: test_charge_mmff94_1
115/160 Test #118: test_charge_mmff94_1 ............. Passed 2.69 sec
Start 119: test_charge_gasteiger_1
116/160 Test #119: test_charge_gasteiger_1 .......... Passed 0.84 sec
Start 120: test_conversion_1
117/160 Test #120: test_conversion_1 ................ Passed 0.51 sec
Start 121: test_datatest_1
118/160 Test #121: test_datatest_1 .................. Passed 0.05 sec
Start 122: test_ffgaff_1
119/160 Test #117: test_cansmi_1 .................... Passed 8.62 sec
Start 123: test_ffghemical_1
120/160 Test #122: test_ffgaff_1 .................... Passed 8.83 sec
Start 124: test_ffmmff94_1
121/160 Test #123: test_ffghemical_1 ................ Passed 7.41 sec
Start 125: test_ffmmff94_2
122/160 Test #125: test_ffmmff94_2 .................. Passed 12.65 sec
Start 126: test_ffuff_1
123/160 Test #126: test_ffuff_1 ..................... Passed 7.54 sec
Start 127: test_formalcharge_1
124/160 Test #127: test_formalcharge_1 .............. Passed 2.30 sec
Start 128: test_format_1
125/160 Test #128: test_format_1 .................... Passed 0.57 sec
Start 129: test_formula_1
126/160 Test #129: test_formula_1 ................... Passed 1.53 sec
Start 130: test_internalcoord_1
127/160 Test #130: test_internalcoord_1 ............. Passed 0.05 sec
Start 131: test_invalidsmarts_1
128/160 Test #131: test_invalidsmarts_1 ............. Passed 0.11 sec
Start 132: test_invalidsmiles_1
129/160 Test #132: test_invalidsmiles_1 ............. Passed 0.06 sec
Start 133: test_iterators_1
130/160 Test #133: test_iterators_1 ................. Passed 1.43 sec
Start 134: test_logp_psa_1
131/160 Test #134: test_logp_psa_1 .................. Passed 0.61 sec
Start 135: test_math_1
132/160 Test #135: test_math_1 ...................... Passed 0.38 sec
Start 136: test_math_2
133/160 Test #136: test_math_2 ...................... Passed 0.23 sec
Start 137: test_math_3
134/160 Test #137: test_math_3 ...................... Passed 0.06 sec
Start 138: test_math_4
135/160 Test #138: test_math_4 ...................... Passed 0.19 sec
Start 139: test_mol_1
136/160 Test #139: test_mol_1 ....................... Passed 0.52 sec
Start 140: test_phmodel_1
137/160 Test #140: test_phmodel_1 ................... Passed 0.63 sec
Start 141: test_residue_1
138/160 Test #141: test_residue_1 ................... Passed 0.55 sec
Start 142: test_ringtest_1
139/160 Test #142: test_ringtest_1 .................. Passed 1.92 sec
Start 143: test_smartstest_1
140/160 Test #143: test_smartstest_1 ................ Passed 3.49 sec
Start 144: test_smartsparse_1
141/160 Test #144: test_smartsparse_1 ............... Passed 0.16 sec
Start 145: test_smilesmatch_1
142/160 Test #145: test_smilesmatch_1 ............... Passed 10.46 sec
Start 146: test_unitcell_1
143/160 Test #146: test_unitcell_1 .................. Passed 0.05 sec
Start 147: test_cmlreadfile_1
144/160 Test #147: test_cmlreadfile_1 ............... Passed 0.86 sec
Start 148: inchiSamples.sdf_Test
145/160 Test #148: inchiSamples.sdf_Test ............ Passed 1.40 sec
Start 149: inchiSamplesTechMan.sdf_Test
146/160 Test #149: inchiSamplesTechMan.sdf_Test ..... Passed 1.90 sec
Start 150: inchiSteffen_PubChem.smi_Test
147/160 Test #64: test_regressions_221 .............***Exception: Child aborted365.23 sec
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Start 151: pytest_babel
148/160 Test #63: test_regressions_1 ...............***Exception: Child aborted368.87 sec
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Start 152: pytest_sym
149/160 Test #151: pytest_babel ..................... Passed 8.20 sec
Start 153: pytest_smartssym
150/160 Test #124: test_ffmmff94_1 .................. Passed 277.74 sec
Start 154: pytest_fastsearch
151/160 Test #154: pytest_fastsearch ................ Passed 2.02 sec
Start 155: pytest_unique
152/160 Test #155: pytest_unique .................... Passed 5.92 sec
Start 156: pytest_kekule
153/160 Test #153: pytest_smartssym ................. Passed 27.22 sec
Start 157: pytest_pdbformat
154/160 Test #157: pytest_pdbformat ................. Passed 0.97 sec
Start 158: pybindtest_bindings
155/160 Test #158: pybindtest_bindings .............. Passed 3.79 sec
Start 159: pybindtest__pybel
156/160 Test #156: pytest_kekule .................... Passed 15.82 sec
Start 160: pybindtest_example
157/160 Test #160: pybindtest_example ............... Passed 1.34 sec
158/160 Test #159: pybindtest__pybel ................ Passed 138.24 sec
159/160 Test #150: inchiSteffen_PubChem.smi_Test ....***Timeout 1500.51 sec
==============================
*** Open Babel Warning in InChI code
#8 :Salt was disconnected;
==============================
*** Open Babel Warning in InChI code
#30 :Salt was disconnected;
160/160 Test #152: pytest_sym .......................***Timeout 1500.33 sec
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python:/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib
98% tests passed, 4 tests failed out of 160
Total Test time (real) = 1974.95 sec
The following tests FAILED:
63 - test_regressions_1 (Child aborted)
64 - test_regressions_221 (Child aborted)
150 - inchiSteffen_PubChem.smi_Test (Timeout)
152 - pytest_sym (Timeout)
Errors while running CTest
make[2]: *** [Makefile:89: test] Error 8
make[2]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
dh_auto_test: cd builddir && make V=1 -j4 test ARGS\+=-j4 returned exit code 2
make[1]: [debian/rules:57: override_dh_auto_test] Error 2 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
dh_testroot -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_prep -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installdirs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_auto_install -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
cd builddir && make V=1 -j4 install DESTDIR=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/cmake -H/<<BUILDDIR>>/openbabel-2.4.1+dfsg -B/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/libinchi/CMakeFiles/inchi.dir/build'.
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make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build
[ 8%] Built target inchi
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[ 22%] Built target openbabel
make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build
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make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build
[ 24%] Built target plugin_descriptors
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend
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make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
[ 26%] Built target plugin_forcefields
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xmlformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target plugin_ops
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target cmlformat
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color=
[ 32%] Built target plugin_charges
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
[ 33%] Built target xmlformat
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cdxmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/png2format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build
[ 34%] Built target cdxmlformat
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xtcformat.dir/build'.
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cmlreactformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Built target png2format
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
[ 35%] Built target xtcformat
[ 35%] Built target cmlreactformat
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemdrawcdx.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rxnformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build
[ 35%] Built target chemdrawcdx
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/yasaraformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/unichemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
[ 35%] Built target rxnformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
[ 36%] Built target yasaraformat
[ 36%] Built target unichemformat
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/thermoformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pqrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pointcloudformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Built target thermoformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbqtformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
[ 36%] Built target pqrformat
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color=
[ 36%] Built target pointcloudformat
[ 37%] Built target pdbqtformat
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pcmodelformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/outformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/msmsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/moldenformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Built target outformat
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
[ 37%] Built target pcmodelformat
[ 38%] Built target msmsformat
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
[ 38%] Built target moldenformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mmcifformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build
make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/msiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/lmpdatformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mmodformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target mmcifformat
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color=
[ 38%] Built target msiformat
[ 38%] Built target mmodformat
[ 38%] Built target lmpdatformat
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/molproformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/stlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/jaguarformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target groformat
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
[ 39%] Built target molproformat
[ 39%] Built target jaguarformat
[ 39%] Built target stlformat
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build
make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/daltonformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target alchemyformat
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
[ 39%] Built target gamessformat
[ 39%] Built target daltonformat
make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend
[ 39%] Built target gausszmatformat
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/balstformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemtoolformat.dir/build'.
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/opendxformat.dir/build'.
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[ 40%] Built target hinformat
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color=
[ 40%] Built target balstformat
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend
[ 40%] Built target chemtoolformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color=
[ 40%] Built target opendxformat
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/boxformat.dir/build'.
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/adfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Built target boxformat
[ 41%] Built target fhiaimsformat
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend
[ 42%] Built target pngformat
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
[ 42%] Built target adfformat
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cssrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/abinitformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/viewmolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessukformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 42%] Built target cssrformat
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend
[ 43%] Built target abinitformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
[ 44%] Built target viewmolformat
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
[ 45%] Built target gamessukformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/posformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/lpmdformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/aoforceformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 45%] Built target posformat
[ 46%] Built target lpmdformat
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
[ 46%] Built target aoforceformat
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/dmolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/acesformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
[ 46%] Built target pdbformat
[ 46%] Built target dmolformat
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/confabreport.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target acesformat
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build
[ 46%] Built target confabreport
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mol2format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nulformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mdlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Built target mol2format
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/dlpolyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 48%] Built target mdlformat
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color=
[ 48%] Built target nulformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
[ 49%] Built target dlpolyformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/titleformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/textformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
[ 49%] Built target titleformat
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cacaoformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/copyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target textformat
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
[ 49%] Built target cacaoformat
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
[ 50%] Built target copyformat
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gausscubeformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mpqcformat.dir/build'.
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make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mdffformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/freefracformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 50%] Built target mpqcformat
make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
[ 50%] Built target mdffformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend
[ 50%] Built target freefracformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build
[ 51%] Built target smileyformat
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/painterformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 51%] Built target MNAformat
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 52%] Built target painterformat
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend
[ 53%] Built target molreport
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build
[ 54%] Built target xyzformat
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 55%] Built target PQSformat
[ 55%] Built target crystal09format
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
[ 56%] Built target mpdformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
[ 56%] Built target svgformat
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/povrayformat.dir/build'.
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make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/reportformat.dir/build'.
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/mopacformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 57%] Built target povrayformat
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
[ 58%] Built target reportformat
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color=
[ 58%] Built target mopacformat
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gromos96format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/MCDLformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nwchemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target gromos96format
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
[ 59%] Built target MCDLformat
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend
[ 60%] Built target nwchemformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/inchiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/shelxformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pubchem.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pwscfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 61%] Built target inchiformat
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend
[ 61%] Built target shelxformat
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color=
[ 62%] Built target pubchem
[ 62%] Built target pwscfformat
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/qchemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fchkformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/siestaformat.dir/build'.
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[ 62%] Built target qchemformat
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
[ 63%] Built target cccformat
[ 63%] Built target siestaformat
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color=
[ 64%] Built target fchkformat
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/tinkerformat.dir/build'.
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[ 64%] Built target xsfformat
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
[ 65%] Built target tinkerformat
[ 65%] Built target carformat
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/asciiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/turbomoleformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
[ 66%] Built target asciiformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/acrformat.dir/build'.
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/rsmiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target turbomoleformat
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
[ 67%] Built target acrformat
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build
[ 68%] Built target rsmiformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Built target gaussformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/zindoformat.dir/build'.
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/orcaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Built target vaspformat
make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 72%] Built target cifformat
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
[ 72%] Built target fhformat
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color=
[ 72%] Built target gulpformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 72%] Built target chem3dformat
[ 72%] Built target CSRformat
make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
[ 73%] Built target amberformat
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color=
[ 74%] Built target castepformat
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 75%] Built target ghemicalformat
[ 75%] Built target chemdrawct
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend
make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color=
[ 75%] Built target fingerprintformat
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color=
[ 76%] Built target bgfformat
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 77%] Built target cacheformat
[ 77%] Built target crkformat
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend
[ 78%] Built target exyzformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
[ 78%] Built target xedformat
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 78%] Built target smilesformat
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
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[ 78%] Built target fastsearchformat
make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color=
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[ 78%] Built target obspectrophore
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color=
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[ 80%] Built target obfit
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --color=
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[ 80%] Built target obenergy
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
[ 80%] Built target obrotamer
[ 81%] Built target obgrep
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color=
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[ 82%] Built target obconformer
make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
[ 82%] Built target obtautomer
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color=
[ 82%] Built target obprobe
make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/babel.dir/DependInfo.cmake --color=
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[ 82%] Built target obabel
make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color=
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[ 82%] Built target obthermo
make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color=
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[ 82%] Built target obgen
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make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color=
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Install the project...
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-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/include/openbabel-2.0/openbabel/stereo/tetraplanar.h
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/include/openbabel-2.0/openbabel/json/customwriter.h
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/include/openbabel-2.0/openbabel/json/json-forwards.h
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/include/openbabel-2.0/openbabel/json/json.h
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/aromatic.txt
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/atomization-energies.txt
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-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/babel_povray3.inc
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/bondtyp.txt
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/element.txt
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/eem.txt
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-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/openbabel/2.4.1/UFF.prm
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/man/man1/babel.1
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/share/man/man1/obabel.1
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-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fpsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/freefracformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/ghemicalformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/gromos96format.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/groformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/lmpdatformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/lpmdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mdffformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mmcifformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mmodformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/moldenformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mpdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mpqcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/msiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/msmsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/opendxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/outformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pcmodelformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pdbqtformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pointcloudformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/posformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pqrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/shelxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/smileyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/stlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/thermoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/tinkerformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/unichemformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/viewmolformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xedformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xyzformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/yasaraformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/rxnformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemdrawcdx.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemkinformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/rsmiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xtcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/png2format.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cdxmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pubchem.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cmlreactformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/libinchi.a
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/babel
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obabel
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obchiral
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obconformer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obenergy
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obfit
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgen
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obminimize
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obprobe
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obprop
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrotamer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrotate
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obsym
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obtautomer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obthermo
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obdistgen
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrms
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obspectrophore
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgrep
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgui
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/roundtrip
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/_openbabel.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/openbabel.py
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/pybel.py
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/Chemistry/OpenBabel.pm
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_install -Nlibchemistry-openbabel-perl
dh_missing --list-missing -Nlibchemistry-openbabel-perl
dh_missing: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/Chemistry/OpenBabel.pm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (0), libopenbabel-dev (3), libopenbabel-doc (0), libopenbabel5 (125), openbabel (39), openbabel-dbg (0), openbabel-gui (2), python-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
mkdir -p /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.28
mv debian/tmp/usr/lib/auto debian/tmp/usr/lib/Chemistry \
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.28
dh_install -plibchemistry-openbabel-perl -Xperllocal.pod --autodest /usr/lib/arm-linux-gnueabihf/perl5/5.28
dh_missing --list-missing -plibchemistry-openbabel-perl -Xperllocal.pod
dh_missing: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (1), libopenbabel-dev (3), libopenbabel-doc (0), libopenbabel5 (125), openbabel (39), openbabel-dbg (0), openbabel-gui (2), python-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installdocs -X.js
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installchangelogs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installexamples -X.pyc
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installman -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installcatalogs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installcron -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installdebconf -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installemacsen -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installifupdown -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installinfo -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_python2 -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
I: dh_python2 fs:329: renaming _openbabel.so to _openbabel.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: _openbabel.arm-linux-gnueabihf.so
dh_installinit -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installsystemd -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installmenu -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installmime -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installmodules -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installlogcheck -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installlogrotate -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installpam -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installppp -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installudev -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installgsettings -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_bugfiles -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_ucf -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_lintian -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_gconf -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_perl -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_usrlocal -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_link -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installwm -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_installxfonts -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_strip_nondeterminism -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_compress -Xusr/share/doc/libopenbabel-doc/html/ \
-Xusr/share/doc/python-openbabel/examples
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_fixperms -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_missing -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_strip
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_strip --dbg-package=openbabel-dbg
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_makeshlibs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_shlibdeps -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotamer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obchiral contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obconformer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotate contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obabel contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprobe contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgrep contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obthermo contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/babel contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obenergy contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obfit contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obspectrophore contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obminimize contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-openbabel/usr/lib/python2.7/dist-packages/_openbabel.arm-linux-gnueabihf.so was not linked against libgomp.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-openbabel/usr/lib/python2.7/dist-packages/_openbabel.arm-linux-gnueabihf.so was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-openbabel/usr/lib/python2.7/dist-packages/_openbabel.arm-linux-gnueabihf.so was not linked against libdl.so.2 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprop contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrms contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obdistgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obtautomer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obsym contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obgen were not linked against libpthread.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obgen were not linked against libz.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obgen were not linked against libdl.so.2 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obgen were not linked against libgomp.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/babel debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obgen were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libchemistry-openbabel-perl/usr/lib/arm-linux-gnueabihf/perl5/5.28/auto/Chemistry/OpenBabel/OpenBabel.so was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libchemistry-openbabel-perl/usr/lib/arm-linux-gnueabihf/perl5/5.28/auto/Chemistry/OpenBabel/OpenBabel.so was not linked against libdl.so.2 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libchemistry-openbabel-perl/usr/lib/arm-linux-gnueabihf/perl5/5.28/auto/Chemistry/OpenBabel/OpenBabel.so was not linked against libcrypt.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libchemistry-openbabel-perl/usr/lib/arm-linux-gnueabihf/perl5/5.28/auto/Chemistry/OpenBabel/OpenBabel.so was not linked against libgomp.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libopenbabel5/usr/lib/libopenbabel.so.5.0.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/openbabel-gui/usr/bin/obgui contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against libgomp.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against libdl.so.2 (it uses none of the library's symbols)
dh_installdeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_gencontrol -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-gencontrol: warning: package python-openbabel: unused substitution variable ${python:Versions}
dh_md5sums -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_builddeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-deb: building package 'libopenbabel-dev' in '../libopenbabel-dev_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'openbabel' in '../openbabel_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'python-openbabel' in '../python-openbabel_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'openbabel-dbg' in '../openbabel-dbg_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'openbabel-gui' in '../openbabel-gui_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libopenbabel5' in '../libopenbabel5_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libchemistry-openbabel-perl' in '../libchemistry-openbabel-perl_2.4.1+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../openbabel_2.4.1+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build openbabel-2.4.1+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-17T12:44:12Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
openbabel_2.4.1+dfsg-3_armhf.changes:
-------------------------------------
Format: 1.8
Date: Mon, 12 Nov 2018 13:24:14 +0100
Source: openbabel
Binary: openbabel openbabel-gui libopenbabel-dev libopenbabel5 libopenbabel-doc python-openbabel libchemistry-openbabel-perl openbabel-dbg
Architecture: armhf
Version: 2.4.1+dfsg-3
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael Banck <mbanck@debian.org>
Description:
libchemistry-openbabel-perl - Chemical toolbox library (perl bindings)
libopenbabel-dev - Chemical toolbox library (development files)
libopenbabel-doc - Chemical toolbox library (documentation)
libopenbabel5 - Chemical toolbox library
openbabel - Chemical toolbox utilities (cli)
openbabel-dbg - Chemical toolbox library (debugging symbols)
openbabel-gui - Chemical toolbox utilities (graphical user interface)
python-openbabel - Chemical toolbox library (python bindings)
Changes:
openbabel (2.4.1+dfsg-3) unstable; urgency=medium
.
[ Michael Banck ]
* debian/patches/pybel_indexerror.patch: New patch, avoids an IndexError for
plugins with empty names, taken from upstream master commit 4c3fe03b.
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ce52723440646965406fccd18238f440 557212 python optional python-openbabel_2.4.1+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libchemistry-openbabel-perl_2.4.1+dfsg-3_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 622084 bytes: control archive=1192 bytes.
1298 bytes, 27 lines control
389 bytes, 4 lines md5sums
Package: libchemistry-openbabel-perl
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 3839
Depends: perl (>= 5.28.0-3), perlapi-5.28.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.2.1), libopenbabel5, libperl5.28 (>= 5.28.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: perl
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (perl bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains Chemistry::Openbabel, the Perl binding for Open Babel.
drwxr-xr-x root/root 0 2018-11-12 12:24 ./
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/arm-linux-gnueabihf/perl5/5.28/
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-rw-r--r-- root/root 3598508 2018-11-12 12:24 ./usr/lib/arm-linux-gnueabihf/perl5/5.28/auto/Chemistry/OpenBabel/OpenBabel.so
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/share/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/share/doc/libchemistry-openbabel-perl/
-rw-r--r-- root/root 8471 2018-11-12 12:24 ./usr/share/doc/libchemistry-openbabel-perl/changelog.Debian.gz
-rw-r--r-- root/root 29241 2018-07-03 08:02 ./usr/share/doc/libchemistry-openbabel-perl/copyright
libopenbabel-dev_2.4.1+dfsg-3_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 189304 bytes: control archive=3196 bytes.
1164 bytes, 28 lines control
6813 bytes, 83 lines md5sums
Package: libopenbabel-dev
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 973
Depends: libopenbabel5 (= 2.4.1+dfsg-3)
Suggests: libopenbabel-doc
Section: libdevel
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (development files)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2018-11-12 12:24 ./
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/include/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/include/openbabel-2.0/
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libopenbabel5_2.4.1+dfsg-3_armhf.deb
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new Debian package, version 2.0.
size 2552996 bytes: control archive=5532 bytes.
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29 bytes, 1 lines shlibs
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Package: libopenbabel5
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 11023
Depends: libc6 (>= 2.4), libcairo2 (>= 1.2.4), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
Conflicts: libopenbabel4
Replaces: libopenbabel4
Section: libs
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the shared library.
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openbabel-dbg_2.4.1+dfsg-3_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 62396104 bytes: control archive=7396 bytes.
7216 bytes, 28 lines control
15524 bytes, 147 lines md5sums
Package: openbabel-dbg
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 64943
Depends: openbabel (= 2.4.1+dfsg-3) | openbabel-gui (= 2.4.1+dfsg-3) | libopenbabel5 (= 2.4.1+dfsg-3) | python-openbabel (= 2.4.1+dfsg-3) | libchemistry-openbabel-perl (= 2.4.1+dfsg-3)
Section: debug
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (debugging symbols)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the debugging symbols.
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openbabel-gui_2.4.1+dfsg-3_armhf.deb
------------------------------------
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size 85796 bytes: control archive=1168 bytes.
1288 bytes, 27 lines control
266 bytes, 4 lines md5sums
Package: openbabel-gui
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 273
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.2.1), libopenbabel5, libstdc++6 (>= 5.2), libwxbase3.0-0v5 (>= 3.0.4+dfsg), libwxgtk3.0-0v5 (>= 3.0.4+dfsg), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (graphical user interface)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the openbabel GUI based on wxWidgets.
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openbabel_2.4.1+dfsg-3_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 118376 bytes: control archive=2380 bytes.
1820 bytes, 38 lines control
2753 bytes, 45 lines md5sums
Package: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 457
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Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (cli)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package includes the following utilities:
* babel: Convert between various chemical file formats
* obenergy: Calculate the energy for a molecule
* obminimize: Optimize the geometry, minimize the energy for a molecule
* obgrep: Molecular search program using SMARTS pattern
* obgen: Generate 3D coordinates for a molecule
* obprop: Print standard molecular properties
* obfit: Superimpose two molecules based on a pattern
* obrotamer: Generate conformer/rotamer coordinates
* obconformer: Generate low-energy conformers
* obchiral: Print molecular chirality information
* obrotate: Rotate dihedral angle of molecules in batch mode
* obprobe: Create electrostatic probe grid
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python-openbabel_2.4.1+dfsg-3_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 557212 bytes: control archive=1804 bytes.
1326 bytes, 28 lines control
1512 bytes, 18 lines md5sums
166 bytes, 9 lines * postinst #!/bin/sh
271 bytes, 14 lines * prerm #!/bin/sh
Package: python-openbabel
Source: openbabel
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 3708
Depends: python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.2.1), libopenbabel5, libpython2.7 (>= 2.7), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Provides: python2.7-openbabel
Section: python
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (python bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the Python binding.
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+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
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Build Architecture: armhf
Build-Space: 1115764
Build-Time: 5982
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1940
Job: openbabel_2.4.1+dfsg-3
Machine Architecture: armhf
Package: openbabel
Package-Time: 7980
Source-Version: 2.4.1+dfsg-3
Space: 1115764
Status: successful
Version: 2.4.1+dfsg-3
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Finished at 2018-11-17T12:44:12Z
Build needed 02:13:00, 1115764k disc space