openbabel →
2.4.1+dfsg-3+b1 →
armhf → 2019-10-14 13:19:04
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| openbabel 2.4.1+dfsg-3+b1 (armhf) Mon, 14 Oct 2019 12:16:38 +0000 |
+==============================================================================+
Package: openbabel
Version: 2.4.1+dfsg-3+b1
Source Version: 2.4.1+dfsg-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-00ebbed4-4d7c-41d5-99e0-10da418dfaf0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.4 MB in 10s (2332 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'openbabel' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/openbabel.git
Please use:
git clone https://salsa.debian.org/debichem-team/openbabel.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5785 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main openbabel 2.4.1+dfsg-3 (dsc) [2642 B]
Get:2 http://172.17.0.1/private bullseye-staging/main openbabel 2.4.1+dfsg-3 (tar) [5760 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main openbabel 2.4.1+dfsg-3 (diff) [22.3 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/openbabel-SBjxwo/openbabel-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/openbabel-SBjxwo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-qMoYwP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-qMoYwP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-qMoYwP/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Packages [435 B]
Fetched 2111 B in 0s (9519 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.28 netbase perl-modules-5.28
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14039 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: cmake, debhelper (>= 11), dh-python, doxygen, libcairo2-dev, libeigen3-dev, libperl-dev, libwxgtk3.0-dev (>= 3.0.2+dfsg-1ubuntu1), libxml2-dev, pkg-config, python-all-dev (>> 2.6.6-3~), python-setuptools, zlib1g-dev
Filtered Build-Depends: cmake, debhelper (>= 11), dh-python, doxygen, libcairo2-dev, libeigen3-dev, libperl-dev, libwxgtk3.0-dev (>= 3.0.2+dfsg-1ubuntu1), libxml2-dev, pkg-config, python-all-dev (>> 2.6.6-3~), python-setuptools, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-openbabel-dummy' in '/<<BUILDDIR>>/resolver-qMoYwP/apt_archive/sbuild-build-depends-openbabel-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-openbabel-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Sources [598 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ Packages [686 B]
Fetched 2617 B in 0s (11.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install openbabel build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.28 netbase perl-modules-5.28
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme
icu-devtools intltool-debian libarchive-zip-perl libarchive13 libatk1.0-0
libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3
libblkid-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libclang1-6.0 libcroco3
libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdrm-amdgpu1
libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1
libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2
libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev
libffi-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi0 libgbm1
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa
libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0
libglx0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common
libharfbuzz0b libice-dev libice6 libicu-dev libicu63 libjbig0
libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm6.0 libllvm8 liblzo2-2 libmagic-mgc libmagic1
libmount-dev libmpdec2 libncurses6 libnghttp2-14 libnotify4 libopengl0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpixman-1-0
libpixman-1-dev libpng-dev libpng16-16 libprocps7 libpsl5
libpthread-stubs0-dev libpython-all-dev libpython-dev libpython-stdlib
libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib librhash0 librsvg2-2
librsvg2-common librtmp1 libselinux1-dev libsensors-config libsensors5
libsepol1-dev libsigsegv2 libsm-dev libsm6 libssh2-1 libssl1.1
libsub-override-perl libthai-data libthai0 libtiff5 libtinfo5 libtool
libuchardet0 libuv1 libwayland-client0 libwayland-server0 libwebp6
libwxbase3.0-0v5 libwxbase3.0-dev libwxgtk3.0-0v5 libwxgtk3.0-dev libx11-6
libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxapian30 libxau-dev
libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev
libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0
libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0
libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1
libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxfixes-dev libxfixes3 libxi6 libxinerama1 libxml2 libxml2-dev
libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1
libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config
po-debconf procps python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal sensible-utils
shared-mime-info ucf uuid-dev wx-common wx3.0-headers x11-common
x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev
x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui
graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libcairo2-doc cups-common libeigen3-doc libmpfrc++-dev freetype2-doc
libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils krb5-doc krb5-user gvfs libice-doc
icu-doc librsvg2-bin lm-sensors libsm-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk wx3.0-doc libx11-doc xapian-tools libxcb-doc
libxext-doc m4-doc apparmor less www-browser libmail-box-perl python-doc
python-tk python-setuptools-doc python2-doc python2.7-doc binfmt-support
python3-doc python3-tk python3-venv python3.7-venv python3.7-doc
Recommended packages:
curl | wget | lynx ca-certificates dbus libarchive-cpio-perl
libgdk-pixbuf2.0-bin xdg-user-dirs libgail-common libgtk2.0-bin krb5-locales
libgpm2 notification-daemon libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl psmisc zip
The following NEW packages will be installed:
adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme
icu-devtools intltool-debian libarchive-zip-perl libarchive13 libatk1.0-0
libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3
libblkid-dev libbrotli1 libbsd0 libcairo-gobject2
libcairo-script-interpreter2 libcairo2 libcairo2-dev libclang1-6.0 libcroco3
libcups2 libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdrm-amdgpu1
libdrm-common libdrm-dev libdrm-etnaviv1 libdrm-exynos1 libdrm-freedreno1
libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm-tegra0 libdrm2 libedit2
libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev
libffi-dev libfile-stripnondeterminism-perl libfontconfig1
libfontconfig1-dev libfreetype6 libfreetype6-dev libfribidi0 libgbm1
libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglu1-mesa
libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0
libglx0 libgraphite2-3 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common
libharfbuzz0b libice-dev libice6 libicu-dev libicu63 libjbig0
libjpeg62-turbo libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm6.0 libllvm8 liblzo2-2 libmagic-mgc libmagic1
libmount-dev libmpdec2 libncurses6 libnghttp2-14 libnotify4 libopengl0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpixman-1-0
libpixman-1-dev libpng-dev libpng16-16 libprocps7 libpsl5
libpthread-stubs0-dev libpython-all-dev libpython-dev libpython-stdlib
libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
libpython3.7-minimal libpython3.7-stdlib librhash0 librsvg2-2
librsvg2-common librtmp1 libselinux1-dev libsensors-config libsensors5
libsepol1-dev libsigsegv2 libsm-dev libsm6 libssh2-1 libssl1.1
libsub-override-perl libthai-data libthai0 libtiff5 libtinfo5 libtool
libuchardet0 libuv1 libwayland-client0 libwayland-server0 libwebp6
libwxbase3.0-0v5 libwxbase3.0-dev libwxgtk3.0-0v5 libwxgtk3.0-dev libx11-6
libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxapian30 libxau-dev
libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev
libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0
libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0
libxcb-shape0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync-dev libxcb-sync1
libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxcomposite1
libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
libxext6 libxfixes-dev libxfixes3 libxi6 libxinerama1 libxml2 libxml2-dev
libxrandr2 libxrender-dev libxrender1 libxshmfence-dev libxshmfence1
libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config
po-debconf procps python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal
sbuild-build-depends-openbabel-dummy sensible-utils shared-mime-info ucf
uuid-dev wx-common wx3.0-headers x11-common x11proto-core-dev
x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 273 newly installed, 0 to remove and 4 not upgraded.
Need to get 163 MB of archives.
After this operation, 937 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qMoYwP/apt_archive ./ sbuild-build-depends-openbabel-dummy 0.invalid.0 [968 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.7-3 [1254 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.17~rc1-1 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.17~rc1-1 [1093 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-1 [1269 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.17~rc1-1 [1821 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.17~rc1-1 [309 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.5~rc1-2 [584 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.5~rc1-2 [1524 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-1 [36.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.5~rc1-2 [1667 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.5~rc1-2 [347 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-1 [20.1 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-1 [61.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.1-1 [1134 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.0.10+git191003-1 [241 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf shared-mime-info armhf 1.10-1 [762 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-common all 2.40.0+dfsg-1 [317 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libgdk-pixbuf2.0-0 armhf 2.40.0+dfsg-1 [158 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf gtk-update-icon-cache armhf 3.24.12-1 [82.7 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.9.1-4 [317 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1 [62.6 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-8 [70.5 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.2-1 [1286 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf librsvg2-2 armhf 2.44.14-1 [924 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf librsvg2-common armhf 2.44.14-1 [23.2 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf adwaita-icon-theme all 3.34.0-2 [11.0 MB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.0-1 [292 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-3 [260 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.66.0-1 [296 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.30.1-1 [102 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.0-1 [14.3 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.6.1 [172 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.6.1 [993 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.5~rc1-1 [78.2 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.5~rc1-1 [145 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20190324-1 [78.9 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libllvm6.0 armhf 1:6.0.1-11+rpi1 [12.6 MB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libclang1-6.0 armhf 1:6.0.1-11+rpi1 [5730 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libxapian30 armhf 1.4.12-1 [956 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.13-11 [3394 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-data all 2.34.1-1 [146 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libatk1.0-0 armhf 2.34.1-1 [43.6 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common-data armhf 0.7-4+b2 [122 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libavahi-common3 armhf 0.7-4+b2 [51.0 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libdbus-1-3 armhf 1.12.16-2 [189 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libavahi-client3 armhf 0.7-4+b2 [54.1 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf uuid-dev armhf 2.34-0.1 [92.5 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libblkid-dev armhf 2.34-0.1 [212 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libcairo-gobject2 armhf 1.16.0-4 [123 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf liblzo2-2 armhf 2.10-0.1 [48.4 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libcairo-script-interpreter2 armhf 1.16.0-4 [150 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-1 [275 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6-dev armhf 2.9.1-4 [479 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1-dev armhf 2.13.1-2 [943 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf x11proto-dev all 2018.4-4 [251 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf x11proto-core-dev all 2018.4-4 [3128 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.4 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.9 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf xtrans-dev all 1.3.5-1 [100 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libxcb1-dev armhf 1.13.1-2 [169 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libx11-dev armhf 2:1.6.8-1 [760 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libxrender-dev armhf 1:0.9.10-1 [37.7 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xext-dev all 2018.4-4 [3128 B]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libxext-dev armhf 2:1.3.3-1+b2 [102 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libice-dev armhf 2:1.0.9-2 [58.8 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libsm-dev armhf 2:1.2.3-1 [35.4 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-dev armhf 0.36.0-1 [477 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0-dev armhf 1.13.1-2 [111 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0-dev armhf 1.13.1-2 [100 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libffi-dev armhf 3.2.1-9 [159 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-data all 2.62.1-1 [1120 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-bin armhf 2.62.1-1 [123 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev-bin armhf 2.62.1-1 [161 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libmount-dev armhf 2.34-0.1 [212 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libsepol1-dev armhf 2.9-2 [308 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.32-5 [175 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.32-5 [168 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix0 armhf 10.32-5 [38.3 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.32-5 [572 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libselinux1-dev armhf 2.9-2 [157 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-dev armhf 2.62.1-1 [1429 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libcairo2-dev armhf 1.16.0-4 [619 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf libcups2 armhf 2.3.0-5+rpi1 [304 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libdrm-common all 2.4.99-1+rpi1 [14.1 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libdrm2 armhf 2.4.99-1+rpi1 [36.3 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf libdrm-amdgpu1 armhf 2.4.99-1+rpi1 [26.5 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf libdrm-radeon1 armhf 2.4.99-1+rpi1 [28.7 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf libdrm-nouveau2 armhf 2.4.99-1+rpi1 [24.5 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf libdrm-omap1 armhf 2.4.99-1+rpi1 [16.2 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf libdrm-freedreno1 armhf 2.4.99-1+rpi1 [26.0 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf libdrm-exynos1 armhf 2.4.99-1+rpi1 [19.2 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf libdrm-tegra0 armhf 2.4.99-1+rpi1 [15.6 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf libdrm-etnaviv1 armhf 2.4.99-1+rpi1 [20.0 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf libdrm-dev armhf 2.4.99-1+rpi1 [143 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf libwayland-server0 armhf 1.17.0-1 [26.2 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf libgbm1 armhf 19.1.6-1+b11 [65.8 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf libglapi-mesa armhf 19.1.6-1+b11 [75.6 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf libwayland-client0 armhf 1.17.0-1 [21.3 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb1 armhf 2:1.6.8-1 [190 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present0 armhf 1.13.1-2 [99.1 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0 armhf 1.13.1-2 [103 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf libegl-mesa0 armhf 19.1.6-1+b11 [117 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf libglvnd0 armhf 1.1.0-1 [54.5 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf libegl1 armhf 1.1.0-1 [27.6 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf libeigen3-dev all 3.3.7-1 [850 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf libxdamage1 armhf 1:1.1.5-1 [15.1 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf libllvm8 armhf 1:8.0.1~+rc4-1+rpi1 [12.1 MB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf libsensors-config all 1:3.5.0-3 [31.6 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf libsensors5 armhf 1:3.5.0-3 [49.5 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dri armhf 19.1.6-1+b11 [4772 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf libglx-mesa0 armhf 19.1.6-1+b11 [168 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf libglx0 armhf 1.1.0-1 [24.6 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf libgl1 armhf 1.1.0-1 [107 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf mesa-common-dev armhf 19.1.6-1+b11 [694 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-core-dev armhf 1.1.0-1 [13.2 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf libgles1 armhf 1.1.0-1 [13.8 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf libgles2 armhf 1.1.0-1 [20.6 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf libopengl0 armhf 1.1.0-1 [40.3 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf libglvnd-dev armhf 1.1.0-1 [5132 B]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf libx11-xcb-dev armhf 2:1.6.8-1 [192 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri3-dev armhf 1.13.1-2 [101 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf libxcb-randr0 armhf 1.13.1-2 [109 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf libxcb-randr0-dev armhf 1.13.1-2 [113 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shape0 armhf 1.13.1-2 [99.5 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shape0-dev armhf 1.13.1-2 [101 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf libxcb-xfixes0-dev armhf 1.13.1-2 [105 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf libxcb-sync-dev armhf 1.13.1-2 [104 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf libxcb-present-dev armhf 1.13.1-2 [101 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf libxshmfence-dev armhf 1.3-1 [8224 B]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf libxcb-dri2-0-dev armhf 1.13.1-2 [102 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf libxcb-glx0-dev armhf 1.13.1-2 [120 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf x11proto-fixes-dev all 1:2018.4-4 [3140 B]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf libxfixes-dev armhf 1:5.0.3-1 [22.7 kB]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf x11proto-damage-dev all 1:2018.4-4 [3140 B]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf libxdamage-dev armhf 1:1.1.5-1 [15.0 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf x11proto-xf86vidmode-dev all 2018.4-4 [3140 B]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf libxxf86vm-dev armhf 1:1.1.4-1+b2 [24.9 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf libgl1-mesa-dev armhf 19.1.6-1+b11 [48.9 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa armhf 9.0.0-2.1 [130 kB]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf libglu1-mesa-dev armhf 9.0.0-2.1 [169 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf libgtk2.0-common all 2.24.32-4 [2701 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf libxcomposite1 armhf 1:0.4.4-2 [16.1 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf libxcursor1 armhf 1:1.2.0-2 [34.2 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf libxrandr2 armhf 2:1.5.1-1 [34.5 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf libgtk2.0-0 armhf 2.24.32-4 [1501 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf libnotify4 armhf 0.7.8-1 [27.5 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf libperl-dev armhf 5.30.0-6 [898 kB]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.17~rc1-1 [881 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.17~rc1-1 [26.5 MB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf libwxbase3.0-0v5 armhf 3.0.4+dfsg-14 [918 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf wx3.0-headers all 3.0.4+dfsg-14 [1129 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf libwxbase3.0-dev armhf 3.0.4+dfsg-14 [140 kB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf libwxgtk3.0-0v5 armhf 3.0.4+dfsg-14 [3664 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf wx-common armhf 3.0.4+dfsg-14 [174 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf libwxgtk3.0-dev armhf 3.0.4+dfsg-14 [140 kB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf libxml2-dev armhf 2.9.4+dfsg1-7+b2 [641 kB]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf python-all armhf 2.7.16-1 [1044 B]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.17~rc1-1 [282 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get:271 http://172.17.0.1/private bullseye-staging/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get:272 http://172.17.0.1/private bullseye-staging/main armhf python-pkg-resources all 41.2.0-1 [183 kB]
Get:273 http://172.17.0.1/private bullseye-staging/main armhf python-setuptools all 41.2.0-1 [384 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
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Setting up libxshmfence1:armhf (1.3-1) ...
Setting up librhash0:armhf (1.3.8-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up procps (2:3.3.15-2) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up libwxbase3.0-0v5:armhf (3.0.4+dfsg-14) ...
Setting up libgtk2.0-common (2.24.32-4) ...
Setting up cmake-data (3.13.4-1) ...
Setting up libatk1.0-0:armhf (2.34.1-1) ...
Setting up libkrb5-3:armhf (1.17-6+b1) ...
Setting up libtiff5:armhf (4.0.10+git191003-1) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20190803-1) ...
Setting up libdrm-common (2.4.99-1+rpi1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (63.2-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b2) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libwayland-client0:armhf (1.17.0-1) ...
Setting up x11proto-dev (2018.4-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.0-1) ...
Setting up wx-common (3.0.4+dfsg-14) ...
Setting up libblkid-dev:armhf (2.34-0.1) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libpython3.7-stdlib:armhf (3.7.5~rc1-2) ...
Setting up libpython2.7:armhf (2.7.17~rc1-1) ...
Setting up libpython2.7-dev:armhf (2.7.17~rc1-1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libxcb-xfixes0:armhf (1.13.1-2) ...
Setting up libxau-dev:armhf (1:1.0.8-1+b2) ...
Setting up libpcre2-dev:armhf (10.32-5) ...
Setting up python2.7 (2.7.17~rc1-1) ...
Setting up libice-dev:armhf (2:1.0.9-2) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython2-stdlib:armhf (2.7.16-1) ...
Setting up libarchive13:armhf (3.4.0-1) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up libxshmfence-dev:armhf (1.3-1) ...
Setting up libselinux1-dev:armhf (2.9-2) ...
Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up libxcb-glx0:armhf (1.13.1-2) ...
Setting up libedit2:armhf (3.1-20190324-1) ...
Setting up libpng-dev:armhf (1.6.37-1) ...
Setting up libxcb-shape0:armhf (1.13.1-2) ...
Setting up libavahi-common3:armhf (0.7-4+b2) ...
Setting up libglib2.0-bin (2.62.1-1) ...
Setting up m4 (1.4.18-2) ...
Setting up libwxbase3.0-dev:armhf (3.0.4+dfsg-14) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/base-unicode-3.0 to provide /usr/bin/wx-config (wx-config) in auto mode
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libllvm6.0:armhf (1:6.0.1-11+rpi1) ...
Setting up python2 (2.7.16-1) ...
Setting up libclang1-6.0 (1:6.0.1-11+rpi1) ...
Setting up libxcb-present0:armhf (1.13.1-2) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up libpython-stdlib:armhf (2.7.16-1) ...
Setting up libxdmcp-dev:armhf (1:1.1.2-3) ...
Setting up libxml2-dev:armhf (2.9.4+dfsg1-7+b2) ...
Setting up doxygen (1.8.13-11) ...
Setting up x11proto-damage-dev (1:2018.4-4) ...
Setting up libfreetype6:armhf (2.9.1-4) ...
Setting up libxcb-sync1:armhf (1.13.1-2) ...
Setting up x11proto-core-dev (2018.4-4) ...
Setting up shared-mime-info (1.10-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libeigen3-dev (3.3.7-1) ...
Setting up libgssapi-krb5-2:armhf (1.17-6+b1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0038+nmu1) ...
Setting up autoconf (2.69-11) ...
Setting up libxcb-dri2-0:armhf (1.13.1-2) ...
Setting up x11proto-xf86vidmode-dev (2018.4-4) ...
Setting up x11proto-xext-dev (2018.4-4) ...
Setting up libdrm2:armhf (2.4.99-1+rpi1) ...
Setting up dwz (0.13-1) ...
Setting up groff-base (1.22.4-3) ...
Setting up libxcb-randr0:armhf (1.13.1-2) ...
Setting up libcurl4:armhf (7.66.0-1) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libharfbuzz0b:armhf (2.6.2-1) ...
Setting up libpython2-dev:armhf (2.7.16-1) ...
Setting up libdrm-omap1:armhf (2.4.99-1+rpi1) ...
Setting up x11proto-fixes-dev (1:2018.4-4) ...
Setting up libxcomposite1:armhf (1:0.4.4-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up python (2.7.16-1) ...
Setting up libavahi-client3:armhf (0.7-4+b2) ...
Setting up libmount-dev:armhf (2.34-0.1) ...
Setting up libdrm-exynos1:armhf (2.4.99-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.7.5-1) ...
Setting up libdrm-amdgpu1:armhf (2.4.99-1+rpi1) ...
Setting up python2.7-dev (2.7.17~rc1-1) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libllvm8:armhf (1:8.0.1~+rc4-1+rpi1) ...
Setting up libxcb-dri3-0:armhf (1.13.1-2) ...
Setting up python3.7 (3.7.5~rc1-2) ...
Setting up libdrm-nouveau2:armhf (2.4.99-1+rpi1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libdrm-etnaviv1:armhf (2.4.99-1+rpi1) ...
Setting up libxcb1-dev:armhf (1.13.1-2) ...
Setting up python2-dev (2.7.16-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libgbm1:armhf (19.1.6-1+b11) ...
Setting up libsm-dev:armhf (2:1.2.3-1) ...
Setting up libdrm-radeon1:armhf (2.4.99-1+rpi1) ...
Setting up python-pkg-resources (41.2.0-1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libgl1-mesa-dri:armhf (19.1.6-1+b11) ...
Setting up libx11-dev:armhf (2:1.6.8-1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxcb-dri3-dev:armhf (1.13.1-2) ...
Setting up python3 (3.7.5-1) ...
Setting up python-all (2.7.16-1) ...
Setting up man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libfreetype6-dev:armhf (2.9.1-4) ...
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython-dev:armhf (2.7.16-1) ...
Setting up libxcb-shm0-dev:armhf (1.13.1-2) ...
Setting up libegl-mesa0:armhf (19.1.6-1+b11) ...
Setting up libxcb-dri2-0-dev:armhf (1.13.1-2) ...
Setting up libxfixes3:armhf (1:5.0.3-1) ...
Setting up libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-1) ...
Setting up libxinerama1:armhf (2:1.1.4-2) ...
Setting up libxrandr2:armhf (2:1.5.1-1) ...
Setting up libdrm-freedreno1:armhf (2.4.99-1+rpi1) ...
Setting up python-setuptools (41.2.0-1) ...
Setting up libxcb-render0-dev:armhf (1.13.1-2) ...
Setting up libxcb-glx0-dev:armhf (1.13.1-2) ...
Setting up libdrm-tegra0:armhf (2.4.99-1+rpi1) ...
Setting up libxcb-shape0-dev:armhf (1.13.1-2) ...
Setting up libxext-dev:armhf (2:1.3.3-1+b2) ...
Setting up libcups2:armhf (2.3.0-5+rpi1) ...
Setting up libegl1:armhf (1.1.0-1) ...
Setting up cmake (3.13.4-1) ...
Setting up libxcb-sync-dev:armhf (1.13.1-2) ...
Setting up libxcb-xfixes0-dev:armhf (1.13.1-2) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up python3-lib2to3 (3.7.5~rc1-1) ...
Setting up libxrender-dev:armhf (1:0.9.10-1) ...
Setting up python-dev (2.7.16-1) ...
Setting up python3-distutils (3.7.5~rc1-1) ...
Setting up dh-python (4.20190722) ...
Setting up libglib2.0-dev-bin (2.62.1-1) ...
Setting up gtk-update-icon-cache (3.24.12-1) ...
Setting up libx11-xcb-dev:armhf (2:1.6.8-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libdrm-dev:armhf (2.4.99-1+rpi1) ...
Setting up libfontconfig1-dev:armhf (2.13.1-2) ...
Setting up libxdamage1:armhf (1:1.1.5-1) ...
Setting up libxi6:armhf (2:1.7.9-1) ...
Setting up libpython-all-dev:armhf (2.7.16-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libxxf86vm-dev:armhf (1:1.1.4-1+b2) ...
Setting up libxcursor1:armhf (1:1.2.0-2) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libxfixes-dev:armhf (1:5.0.3-1) ...
Setting up libglib2.0-dev:armhf (2.62.1-1) ...
Setting up libxcb-randr0-dev:armhf (1.13.1-2) ...
Setting up libnotify4:armhf (0.7.8-1) ...
Setting up libxcb-present-dev:armhf (1.13.1-2) ...
Setting up mesa-common-dev:armhf (19.1.6-1+b11) ...
Setting up libcairo-gobject2:armhf (1.16.0-4) ...
Setting up python-all-dev (2.7.16-1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libxdamage-dev:armhf (1:1.1.5-1) ...
Setting up libcairo-script-interpreter2:armhf (1.16.0-4) ...
Setting up libglx-mesa0:armhf (19.1.6-1+b11) ...
Setting up libglx0:armhf (1.1.0-1) ...
Setting up librsvg2-2:armhf (2.44.14-1) ...
Setting up libgl1:armhf (1.1.0-1) ...
Setting up librsvg2-common:armhf (2.44.14-1) ...
Setting up libcairo2-dev:armhf (1.16.0-4) ...
Setting up libglu1-mesa:armhf (9.0.0-2.1) ...
Setting up libglvnd-dev:armhf (1.1.0-1) ...
Setting up adwaita-icon-theme (3.34.0-2) ...
update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
Setting up libgl1-mesa-dev:armhf (19.1.6-1+b11) ...
Setting up libgtk2.0-0:armhf (2.24.32-4) ...
Setting up libwxgtk3.0-0v5:armhf (3.0.4+dfsg-14) ...
Setting up libglu1-mesa-dev:armhf (9.0.0-2.1) ...
Setting up libwxgtk3.0-dev:armhf (3.0.4+dfsg-14) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/wx/config/gtk2-unicode-3.0 to provide /usr/bin/wx-config (wx-config) in auto mode
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.6.0-1) ...
Setting up debhelper (12.6.1) ...
Setting up sbuild-build-depends-openbabel-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-2+rpi1) ...
Processing triggers for libgdk-pixbuf2.0-0:armhf (2.40.0+dfsg-1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.32.51.20190909-1+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-8+rpi1 gcc-9_9.2.1-8+rpi1 libc6-dev_2.29-2+rpi1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1
Package versions: adduser_3.118 adwaita-icon-theme_3.34.0-2 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1+rpi1 binutils-arm-linux-gnueabihf_2.32.51.20190909-1+rpi1 binutils-common_2.32.51.20190909-1+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:9.2.1-3+rpi1 cpp-9_9.2.1-8+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debianutils_4.9 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 doxygen_1.8.13-11 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3+rpi1 g++-9_9.2.1-8+rpi1 gcc_4:9.2.1-3+rpi1 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b3 gcc-7-base_7.4.0-14 gcc-9_9.2.1-8+rpi1 gcc-9-base_9.2.1-8+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-3 gtk-update-icon-cache_3.24.12-1 gzip_1.9-3 hicolor-icon-theme_0.17-2 hostname_3.22 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.65-1 libarchive13_3.4.0-1 libasan5_9.2.1-8+rpi1 libassuan0_2.5.3-7 libatk1.0-0_2.34.1-1 libatk1.0-data_2.34.1-1 libatomic1_9.2.1-8+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libavahi-client3_0.7-4+b2 libavahi-common-data_0.7-4+b2 libavahi-common3_0.7-4+b2 libbinutils_2.32.51.20190909-1+rpi1 libblkid-dev_2.34-0.1 libblkid1_2.34-0.1 libbrotli1_1.0.7-3 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2+rpi1 libc-dev-bin_2.29-2+rpi1 libc6_2.29-2+rpi1 libc6-dev_2.29-2+rpi1 libcairo-gobject2_1.16.0-4 libcairo-script-interpreter2_1.16.0-4 libcairo2_1.16.0-4 libcairo2-dev_1.16.0-4 libcap-ng0_0.7.9-2 libcc1-0_9.2.1-8+rpi1 libclang1-6.0_1:6.0.1-11+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libcups2_2.3.0-5+rpi1 libcurl4_7.66.0-1 libdatrie1_0.2.12-3+b1 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.16-2 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdpkg-perl_1.19.7 libdrm-amdgpu1_2.4.99-1+rpi1 libdrm-common_2.4.99-1+rpi1 libdrm-dev_2.4.99-1+rpi1 libdrm-etnaviv1_2.4.99-1+rpi1 libdrm-exynos1_2.4.99-1+rpi1 libdrm-freedreno1_2.4.99-1+rpi1 libdrm-nouveau2_2.4.99-1+rpi1 libdrm-omap1_2.4.99-1+rpi1 libdrm-radeon1_2.4.99-1+rpi1 libdrm-tegra0_2.4.99-1+rpi1 libdrm2_2.4.99-1+rpi1 libedit2_3.1-20190324-1 libegl-mesa0_19.1.6-1+b11 libegl1_1.1.0-1 libeigen3-dev_3.3.7-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi-dev_3.2.1-9 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.0-1 libfontconfig1_2.13.1-2 libfontconfig1-dev_2.13.1-2 libfreetype6_2.9.1-4 libfreetype6-dev_2.9.1-4 libfribidi0_1.0.7-1 libgbm1_19.1.6-1+b11 libgcc-9-dev_9.2.1-8+rpi1 libgcc1_1:9.2.1-8+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgdk-pixbuf2.0-0_2.40.0+dfsg-1 libgdk-pixbuf2.0-common_2.40.0+dfsg-1 libgl1_1.1.0-1 libgl1-mesa-dev_19.1.6-1+b11 libgl1-mesa-dri_19.1.6-1+b11 libglapi-mesa_19.1.6-1+b11 libgles1_1.1.0-1 libgles2_1.1.0-1 libglib2.0-0_2.62.1-1 libglib2.0-bin_2.62.1-1 libglib2.0-data_2.62.1-1 libglib2.0-dev_2.62.1-1 libglib2.0-dev-bin_2.62.1-1 libglu1-mesa_9.0.0-2.1 libglu1-mesa-dev_9.0.0-2.1 libglvnd-core-dev_1.1.0-1 libglvnd-dev_1.1.0-1 libglvnd0_1.1.0-1 libglx-mesa0_19.1.6-1+b11 libglx0_1.1.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8+rpi1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-8 libgssapi-krb5-2_1.17-6+b1 libgtk2.0-0_2.24.32-4 libgtk2.0-common_2.24.32-4 libharfbuzz0b_2.6.2-1 libhogweed4_3.4.1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl19_0.20-2 libisl21_0.21-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1 libldap-common_2.4.48+dfsg-1 libllvm6.0_1:6.0.1-11+rpi1 libllvm8_1:8.0.1~+rc4-1+rpi1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount-dev_2.34-0.1 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnotify4_0.7.8-1 libnpth0_1.6-1 libopengl0_1.1.0-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-7+b1 libpangocairo-1.0-0_1.42.4-7+b1 libpangoft2-1.0-0_1.42.4-7+b1 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl-dev_5.30.0-6 libperl5.28_5.28.1-6 libperl5.30_5.30.0-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpixman-1-dev_0.36.0-1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpthread-stubs0-dev_0.4-1 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.17~rc1-1 libpython2.7-dev_2.7.17~rc1-1 libpython2.7-minimal_2.7.17~rc1-1 libpython2.7-stdlib_2.7.17~rc1-1 libpython3-stdlib_3.7.5-1 libpython3.7-minimal_3.7.5~rc1-2 libpython3.7-stdlib_3.7.5~rc1-2 libreadline7_7.0-5 libreadline8_8.0-3 librhash0_1.3.8-1 librsvg2-2_2.44.14-1 librsvg2-common_2.44.14-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.1-2+rpi1 libselinux1_2.9-2 libselinux1-dev_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsensors-config_1:3.5.0-3 libsensors5_1:3.5.0-3 libsepol1_2.9-2 libsepol1-dev_2.9-2 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libsqlite3-0_3.29.0-2 libss2_1.45.4-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-1 libstdc++-9-dev_9.2.1-8+rpi1 libstdc++6_9.2.1-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_242-7+rpi1 libtasn1-6_4.14-3 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.0.10+git191003-1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libubsan1_9.2.1-8+rpi1 libuchardet0_0.0.6-3 libudev1_242-7+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.30.1-1 libwayland-client0_1.17.0-1 libwayland-server0_1.17.0-1 libwebp6_0.6.1-2 libwxbase3.0-0v5_3.0.4+dfsg-14 libwxbase3.0-dev_3.0.4+dfsg-14 libwxgtk3.0-0v5_3.0.4+dfsg-14 libwxgtk3.0-dev_3.0.4+dfsg-14 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libx11-dev_2:1.6.8-1 libx11-xcb-dev_2:1.6.8-1 libx11-xcb1_2:1.6.8-1 libxapian30_1.4.12-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-shm0-dev_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxcomposite1_1:0.4.4-2 libxcursor1_1:1.2.0-2 libxdamage-dev_1:1.1.5-1 libxdamage1_1:1.1.5-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxinerama1_2:1.1.4-2 libxml2_2.9.4+dfsg1-7+b2 libxml2-dev_2.9.4+dfsg1-7+b2 libxrandr2_2:1.5.1-1 libxrender-dev_1:0.9.10-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libzstd1_1.4.3+dfsg-1+rpi1 linux-libc-dev_4.18.20-2+rpi1+b1 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.7-3 mawk_1.3.3-17 mesa-common-dev_19.1.6-1+b11 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 netbase_5.6 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-6 perl-base_5.30.0-6 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-6 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.16-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-dev_2.7.16-1 python-minimal_2.7.16-1 python-pkg-resources_41.2.0-1 python-setuptools_41.2.0-1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.17~rc1-1 python2.7-dev_2.7.17~rc1-1 python2.7-minimal_2.7.17~rc1-1 python3_3.7.5-1 python3-distutils_3.7.5~rc1-1 python3-lib2to3_3.7.5~rc1-1 python3-minimal_3.7.5-1 python3.7_3.7.5~rc1-2 python3.7-minimal_3.7.5~rc1-2 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-openbabel-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 shared-mime-info_1.10-1 sysvinit-utils_2.96~beta-3 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 uuid-dev_2.34-0.1 wx-common_3.0.4+dfsg-14 wx3.0-headers_3.0.4+dfsg-14 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 12 12:48:37 2018 UTC
gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./openbabel_2.4.1+dfsg-3.dsc
dpkg-source: info: extracting openbabel in /<<BUILDDIR>>/openbabel-2.4.1+dfsg
dpkg-source: info: unpacking openbabel_2.4.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking openbabel_2.4.1+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying libinchi_static.patch
dpkg-source: info: applying gcc-version.diff
dpkg-source: info: applying disable_json_formats.patch
dpkg-source: info: applying remove_link_top.diff
dpkg-source: info: applying manpages.diff
dpkg-source: info: applying pybel_indexerror.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.4.1+dfsg-3+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-00ebbed4-4d7c-41d5-99e0-10da418dfaf0
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package openbabel
dpkg-buildpackage: info: source version 2.4.1+dfsg-3+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
dh_auto_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_autoreconf_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_clean -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules build-arch
dh build-arch --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
dh_update_autotools_config -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_autoreconf -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON
cd builddir && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=None -DPYTHON_BINDINGS=ON -DPERL_BINDINGS=ON -DOBPERL_INSTALLDIRS=vendor -DCMAKE_SKIP_RPATH=ON -DBUILD_GUI=ON -DENABLE_OPENMP=ON -DBUILD_DOCS=ON ..
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy):
The OLD behavior for policy CMP0005 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
CMake Deprecation Warning at CMakeLists.txt:18 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Using included inchi library.
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.4")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found wxWidgets: -L/usr/lib/arm-linux-gnueabihf;-pthread;;;-lwx_baseu-3.0;-lwx_gtk2u_core-3.0;-lwx_gtk2u_adv-3.0 (found version "3.0.4")
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Checking available shared pointer...
-- Performing Test HAVE_STD_SHARED_PTR
-- Performing Test HAVE_STD_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR
-- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER
-- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success
-- Use std::tr1::shared_ptr in tr1/memory
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0")
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29")
-- Checking for module 'cairo'
-- Found cairo, version 1.16.0
-- Found Cairo: /usr/lib/arm-linux-gnueabihf/libcairo.so
-- Cairo found. PNG output will be supported.
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen missing components: dot
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
-- wxWidgets found => GUI will be built
-- Found PythonInterp: /usr/bin/python (found version "2.7.17")
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.17rc1")
-- Python bindings will be compiled
-- Found Perl: /usr/bin/perl (found version "5.30.0")
-- Found PerlLibs: /usr/lib/arm-linux-gnueabihf/libperl.so.5.30 (found version "5.30.0")
-- Perl bindings will be compiled
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
OBPERL_INSTALLDIRS
-- Build files have been written to: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
sed -i -e "s@##DEB_HOST_MULTIARCH##@arm-linux-gnueabihf@g" \
debian/libopenbabel-dev.install
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_auto_build
cd builddir && make -j4 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/cmake -S/<<BUILDDIR>>/openbabel-2.4.1+dfsg -B/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
Scanning dependencies of target inchi
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimak2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimak2.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimake.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimake.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/builder.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/builder.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/builder.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBBuilder::LoadFragments()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimap1.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimap1.c
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static void OpenBabel::OBBuilder::ConnectFrags(OpenBabel::OBMol&, OpenBabel::OBMol&, std::vector<int>, std::vector<OpenBabel::vector3>, std::vector<int>)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimap2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimap2.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichimap4.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichimap4.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichinorm.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichinorm.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichinorm.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiparm.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiparm.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiprt1.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiprt1.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiprt2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiprt2.c
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chargemodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp
[ 5%] Building CXX object src/CMakeFiles/openbabel.dir/chiral.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/chiral.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chargemodel.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBChargeModel::FillChargeVectors(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp:23:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiprt3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiprt3.c
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/chiral.cpp:23:
/usr/include/c++/9/bits/stl_vector.h: In function 'void OpenBabel::construct_g_matrix(OpenBabel::OBMol&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void OpenBabel::construct_c_matrix(OpenBabel::OBMol&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void OpenBabel::GraphPotentials(OpenBabel::OBMol&, std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'double OpenBabel::CalcSignedVolume(OpenBabel::OBMol&, OpenBabel::OBAtom*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 6%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/data_utilities.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp
[ 6%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiqueu.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiqueu.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<unsigned int, double>; _Alloc = std::allocator<std::pair<unsigned int, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<unsigned int, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBIsotopeTable::ParseLine(const char*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, double>*, std::vector<std::pair<unsigned int, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBAtomHOF; _Alloc = std::allocator<OpenBabel::OBAtomHOF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAtomHOF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiread.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiread.c
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAtomHOF*, std::vector<OpenBabel::OBAtomHOF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp:27:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/data_utilities.cpp:27:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::extract_thermochemistry(OpenBabel::OBMol&, bool, int*, int, double, double*, double*, double*, double*, double*, double*, double*, double*, std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichiring.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichiring.c
[ 7%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/descriptor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptor.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> OpenBabel::OBElementTable::GetRGB(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr1.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr1.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr1.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/fingerprint.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprint.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr3.c
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/forcefield.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr4.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr4.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr5.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr5.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr5.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr6.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr6.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr6.c
[ 9%] Building CXX object src/CMakeFiles/openbabel.dir/format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/format.cpp
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichirvr7.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichirvr7.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichirvr7.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichisort.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichisort.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichisort.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichister.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichister.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ichitaut.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ichitaut.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ikey_base26.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ikey_base26.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/ikey_dll.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/ikey_dll.c
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFConstraint; _Alloc = std::allocator<OpenBabel::OBFFConstraint>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFConstraint>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddTorsionConstraint(int, int, int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddIgnore(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomXConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 10%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_a.c
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomYConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddDistanceConstraint(int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_a2.c
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAtomZConstraint(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFFConstraints::AddAngleConstraint(int, int, int, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFConstraint*, std::vector<OpenBabel::OBFFConstraint> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefield.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::RandomRotorSearchNextConformer(unsigned int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::SystematicRotorSearchNextConformer(unsigned int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/inchi_dll_main.c
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/generic.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/generic.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/runichi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/runichi.c
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBForceField::WeightedRotorSearch(unsigned int, unsigned int, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/graphsym.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/graphsym.cpp
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/sha2.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/sha2.c
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceField::GetCoordinates(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/strutil.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBUnitCell::GetCellVectors() const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/list:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/transform3d.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/spacegroup.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/generic.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:51,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/list.tcc: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_assign_dispatch(_InputIterator, _InputIterator, std::__false_type) [with _InputIterator = std::_List_const_iterator<OpenBabel::vector3>; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
308 | list<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/list.tcc:308:7: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBAngle; _Alloc = std::allocator<OpenBabel::OBAngle>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAngle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBAngle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAngleData::SetData(OpenBabel::OBAngle&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBAngle*, std::vector<OpenBabel::OBAngle> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 11%] Building CXX object src/CMakeFiles/openbabel.dir/grid.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/grid.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>; _Alloc = std::allocator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::quad<OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In constructor 'OpenBabel::OBTorsion::OBTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBTorsion::AddTorsion(OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double>*, std::vector<OpenBabel::triple<OpenBabel::OBAtom*, OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 12%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cc -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -fPIC -o CMakeFiles/inchi.dir/util.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/util.c
In file included from /usr/include/c++/9/list:64,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/transform3d.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/spacegroup.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/generic.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:51,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/list.tcc: In member function 'void OpenBabel::OBUnitCell::FillUnitCell(OpenBabel::OBMol*)':
/usr/include/c++/9/bits/list.tcc:286:4: note: parameter passing for argument of type 'std::_List_const_iterator<OpenBabel::vector3>' changed in GCC 7.1
286 | _M_assign_dispatch(__x.begin(), __x.end(), __false_type());
| ^~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c: In function 'WriteOrigAtomDataToSDfile':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4463:43: warning: '%3d' directive writing between 3 and 4 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
4463 | sprintf( entry, " %3d %3d", i+1, (int)at[i].charge );
| ^~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4463:37: note: directive argument in the range [-128, 127]
4463 | sprintf( entry, " %3d %3d", i+1, (int)at[i].charge );
| ^~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:40:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 15 bytes into a destination of size 10
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4484:47: warning: '%3d' directive writing 3 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
4484 | sprintf( entry, " %3d %3d", i+1, radical );
| ^~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4484:41: note: directive argument in the range [1, 3]
4484 | sprintf( entry, " %3d %3d", i+1, radical );
| ^~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:40:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 14 bytes into a destination of size 10
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:4535:43: warning: '%3d' directive writing between 3 and 11 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
4535 | sprintf( entry, " %3d %3d", i+1, iso );
| ^~~
In file included from /usr/include/stdio.h:867,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi/strutil.c:40:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 22 bytes into a destination of size 10
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object src/CMakeFiles/openbabel.dir/griddata.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/griddata.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/griddata.cpp
[ 12%] Linking C static library libinchi.a
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -P CMakeFiles/inchi.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1
/usr/bin/ar qc libinchi.a CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o
/usr/bin/ranlib libinchi.a
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/generic.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadClosedShellOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 12%] Built target inchi
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/isomorphism.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/isomorphism.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadBetaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/grid.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::istream& OpenBabel::operator>>(std::istream&, OpenBabel::OBFloatGrid&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFloatGrid::SetNumberOfPoints(int, int, int)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBFloatGrid::Init(OpenBabel::OBMol&, double, double)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBOrbitalData::LoadAlphaOrbitals(std::vector<double>, std::vector<std::__cxx11::basic_string<char> >, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/kekulize.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/kekulize.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/locale.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/locale.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/locale.cpp
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/matrix.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mcdlutil.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/matrix.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/matrix.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/matrix.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::mult_matrix(std::vector<std::vector<double> >&, std::vector<std::vector<double> >&, std::vector<std::vector<double> >&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::convert_matrix_f(double*, std::vector<std::vector<double> >&, int, int)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::convert_matrix_ff(double**, std::vector<std::vector<double> >&, int, int)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/molchrg.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/molchrg.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/mol.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/mol.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obconversion.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obconversion.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/oberror.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/oberror.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obiter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obiter.cpp
[ 14%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obutil.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/op.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/op.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/op.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::OBMol> OpenBabel::OBMol::Separate(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/parsmart.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/parsmart.cpp
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::PerceiveBondOrders()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBMol::ConnectTheDots()':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mol.cpp:22:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/patty.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/patty.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/patty.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/phmodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp
[ 15%] Building CXX object src/CMakeFiles/openbabel.dir/plugin.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/plugin.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/plugin.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/pointgroup.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/pointgroup.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/phmodel.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBPhModel::ParseLine(const char*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/query.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/query.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/query.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/mcdlutil.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In function 'void OpenBabel::generateDiagram(std::vector<int>, std::vector<int>, std::vector<double>&, std::vector<double>&, int, int)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/rand.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rand.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rand.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/residue.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/residue.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/residue.cpp
[ 16%] Building CXX object src/CMakeFiles/openbabel.dir/ring.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/ring.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ring.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotamer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/rotor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/rotor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/rotamer.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/rotamer.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotamer.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBRotamerList::Setup(OpenBabel::OBMol&, OpenBabel::OBRotorList&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/spectrophore.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/spectrophore.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tautomer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/tautomer.cpp
[ 17%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/tokenst.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/tokenst.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/rotor.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBRotor::RemoveSymTorsionValues(int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBRotor::Precalc(std::vector<double*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBRotorRules::ParseLine(const char*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/transform.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/transform.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/transform.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/typer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/typer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/typer.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/spectrophore.h:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/spectrophore.h:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/spectrophore.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<double> OpenBabel::OBSpectrophore::GetSpectrophore(OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/obmolecformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/conformersearch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp
[ 18%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/confsearch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function '_ForwardIterator std::__remove_if(_ForwardIterator, _ForwardIterator, _Predicate) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_pred<std::binder2nd<std::less<double> > >]':
/usr/include/c++/9/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
860 | __remove_if(_ForwardIterator __first, _ForwardIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:860:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::vector3> OpenBabel::GetHeavyAtomCoords(const OpenBabel::OBMol*, const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBDiversePoses::GetHeavyAtomCoords(const std::vector<OpenBabel::vector3>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)':
/usr/include/c++/9/bits/stl_algo.h:939:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
939 | return std::__remove_if(__first, __last,
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
940 | __gnu_cxx::__ops::__pred_iter(__pred));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obmolecformat.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static bool OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*, OpenBabel::OBFormat*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Alloc = std::allocator<std::pair<std::vector<OpenBabel::vector3>, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<std::vector<OpenBabel::vector3>, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual double OpenBabel::OBMinimizingRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBDiversePoses::AddPose(std::vector<OpenBabel::vector3>, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual double OpenBabel::OBRMSDConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBDiversePoses::AddPose(double*, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Distance = int; _Tp = std::pair<std::vector<OpenBabel::vector3>, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::ConformerScore; _Alloc = std::allocator<OpenBabel::ConformerScore>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::ConformerScore>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<std::vector<OpenBabel::vector3>, double>&, const std::pair<std::vector<OpenBabel::vector3>, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/distgeom.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/distgeom.cpp
/usr/include/c++/9/bits/stl_algo.h: In function 'void OpenBabel::UpdateConformersFromTree(OpenBabel::OBMol*, std::vector<double>&, OpenBabel::OBDiversePoses*, bool)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/forcefield.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:22:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::vector<OpenBabel::vector3>, double>*, std::vector<std::pair<std::vector<OpenBabel::vector3>, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int OpenBabel::OBConformerSearch::share_fitness()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/dlhandler_unix.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/dlhandler_unix.cpp
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::_Alloc_node; _Key = std::vector<int>; _Val = std::pair<const std::vector<int>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::vector<int>, double> >; _Compare = std::less<std::vector<int> >; _Alloc = std::allocator<std::pair<const std::vector<int>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual double OpenBabel::OBMinimizingEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual double OpenBabel::OBEnergyConformerScore::Score(OpenBabel::OBMol&, unsigned int, const RotorKeys&, const std::vector<double*>&)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::vector<int>, std::pair<const std::vector<int>, double>, std::_Select1st<std::pair<const std::vector<int>, double> >, std::less<std::vector<int> >, std::allocator<std::pair<const std::vector<int>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::vector<int>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerHighScore>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Distance = int; _Tp = OpenBabel::ConformerScore; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::CompareConformerLowScore>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/depict.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double OpenBabel::OBConformerSearch::MakeSelection()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/depict/svgpainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/svgpainter.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int OpenBabel::OBConformerSearch::score_population()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::ConformerScore*, std::vector<OpenBabel::ConformerScore> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/conformersearch.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/conformersearch.cpp:19:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/matrix3x3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/matrix3x3.cpp
[ 19%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/spacegroup.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/spacegroup.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBAtom*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBAtom*, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBAtom*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBDepictPrivateBallAndStick::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void OpenBabel::OBDepictPrivate::DrawWedge(OpenBabel::OBAtom*, OpenBabel::OBAtom*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/transform3d.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/transform3d.cpp
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBAtom*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const std::pair<OpenBabel::OBAtom*, double>&, const std::pair<OpenBabel::OBAtom*, double>&)>]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/vector3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/vector3.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/depict.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBAtom*, double>*, std::vector<std::pair<OpenBabel::OBAtom*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/math/align.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/stereo.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/stereo.cpp
[ 20%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/tetranonplanar.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetraplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/tetraplanar.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/squareplanar.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/squareplanar.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/cistrans.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/cistrans.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/tetrahedral.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/tetrahedral.cpp
[ 21%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/perception.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp
[ 22%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/openbabel.dir/stereo/facade.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/facade.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/math/align.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetRefMol(const OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::OBAlign::SetTargetMol(const OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'std::vector<OpenBabel::vector3> OpenBabel::OBAlign::GetAlignment()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/stereo.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetrahedral.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/stereo/perception.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBCisTransStereo*> OpenBabel::CisTransFrom3D(OpenBabel::OBMol*, const OBStereoUnitSet&, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBTetrahedralStereo*> OpenBabel::TetrahedralFrom3D(OpenBabel::OBMol*, const OBStereoUnitSet&, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'std::vector<OpenBabel::OBCisTransStereo*> OpenBabel::CisTransFrom2D(OpenBabel::OBMol*, const OBStereoUnitSet&, const std::map<OpenBabel::OBBond*, OpenBabel::OBStereo::BondDirection>*, bool)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addpolarh.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprints/finger3.cpp
[ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/addnonpolarh.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBSmartsPattern*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBSmartsPattern*, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/groupcontrib.cpp:25:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBGroupContrib::ParseFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBSmartsPattern*, double>*, std::vector<std::pair<OpenBabel::OBSmartsPattern*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/canonical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/canonical.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/filters.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationGaff>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationGaff*, std::vector<OpenBabel::OBFFOOPCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGaff; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGaff>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGaff>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGaff::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGaff*, std::vector<OpenBabel::OBFFBondCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGaff*, std::vector<OpenBabel::OBFFAngleCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGaff*, std::vector<OpenBabel::OBFFTorsionCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGaff*, std::vector<OpenBabel::OBFFVDWCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGaff*, std::vector<OpenBabel::OBFFElectrostaticCalculationGaff> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 24%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/fingerprints/fingerecfp.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/changecell.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp
[ 24%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/inchidescriptor.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::OpChangeCell::vc_val; _Alloc = std::allocator<OpenBabel::OpChangeCell::vc_val>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OpChangeCell::vc_val>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OpChangeCell::vc_val*, std::vector<OpenBabel::OpChangeCell::vc_val> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldgaff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGaff::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/changecell.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpChangeCell::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OpChangeCell::vc_val*, std::vector<OpenBabel::OpChangeCell::vc_val> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/descriptors/smartsdescriptors.cpp
[ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/delpolarh.cpp
[ 26%] Linking CXX shared module ../lib/plugin_fingerprints.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color=
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[ 26%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eem.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp
[ 26%] Linking CXX shared module ../lib/plugin_descriptors.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
[ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/delnonpolarh.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cmlreactformat
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make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build
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[ 27%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlreactformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::EEMParameter; _Alloc = std::allocator<OpenBabel::EEMParameter>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::EEMParameter>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eem.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::EEMCharges::_loadParameters()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::EEMParameter*, std::vector<OpenBabel::EEMParameter> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen2D.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/gen2D.cpp
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/gasteiger.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/gasteiger.cpp
[ 27%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/fillUC.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/none.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/none.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/mmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/fillUC.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpFillUC::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/forcefield.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/forcefield.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFAngleCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationGhemical>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFTorsionCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationGhemical>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationGhemical; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationGhemical>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/mmff94.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MMFF94Charges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGhemical::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationGhemical*, std::vector<OpenBabel::OBFFBondCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationGhemical*, std::vector<OpenBabel::OBFFAngleCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationGhemical*, std::vector<OpenBabel::OBFFTorsionCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationGhemical*, std::vector<OpenBabel::OBFFVDWCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationGhemical*, std::vector<OpenBabel::OBFFElectrostaticCalculationGhemical> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/fromfile.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/fromfile.cpp
[ 29%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlreactformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldghemical.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldGhemical::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/gen3d.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/gen3d.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/fromfile.cpp:21:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual bool OpenBabel::FromFileCharges::ComputeCharges(OpenBabel::OBMol&, const char*)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 29%] Linking CXX shared module ../../lib/cmlreactformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.o CMakeFiles/cmlreactformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 29%] Built target cmlreactformat
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/largest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/largest.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/eqeq.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qeq.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/loader.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/loader.cpp
[ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opsplit.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opsplit.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/optransform.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/optransform.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFStrBndCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFStrBndCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFStrBndCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::OBFFOOPCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationMMFF94>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationMMFF94*, std::vector<OpenBabel::OBFFOOPCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationMMFF94; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationMMFF94>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obconversion.h:30,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefieldmmff94.cpp:31:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldMMFF94::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationMMFF94*, std::vector<OpenBabel::OBFFBondCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationMMFF94*, std::vector<OpenBabel::OBFFAngleCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFStrBndCalculationMMFF94*, std::vector<OpenBabel::OBFFStrBndCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationMMFF94*, std::vector<OpenBabel::OBFFTorsionCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationMMFF94*, std::vector<OpenBabel::OBFFVDWCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationMMFF94*, std::vector<OpenBabel::OBFFElectrostaticCalculationMMFF94> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/partialcharges.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/partialcharges.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamPbci(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamCharge(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamBndk(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamOOP(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamDfsb(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamBond(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/readconformers.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/readconformers.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/eqeq.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::EQEqCharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamAngle(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamStrBnd(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamVDW(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldMMFF94::ParseParamTorsion(std::string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::QEqCharges::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/sort.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = std::pair<OpenBabel::OBBase*, double>; _Alloc = std::allocator<std::pair<OpenBabel::OBBase*, double> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<std::pair<OpenBabel::OBBase*, double> >::iterator' {aka '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Distance = int; _Tp = std::pair<OpenBabel::OBBase*, double>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<OpenBabel::Order<double> >]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 30%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xmlformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpSort::ProcessVec(std::vector<OpenBabel::OBBase*>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/sort.cpp:20:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<OpenBabel::OBBase*, double>*, std::vector<std::pair<OpenBabel::OBBase*, double> > >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 30%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp
[ 30%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xmlformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
[ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opisomorph.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opisomorph.cpp
[ 31%] Linking CXX shared module ../../lib/xmlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.o CMakeFiles/xmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target xmlformat
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/ophighlight.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/ophighlight.cpp
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/xout.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/xout.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFBondCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFBondCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFBondCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFVDWCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFVDWCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFVDWCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >'} changed in GCC 7.1
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
Scanning dependencies of target pubchem
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 32%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/pubchem.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qeq.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QEqCharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFAngleCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFAngleCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFAngleCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFTorsionCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFTorsionCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFTorsionCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFOOPCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFOOPCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFOOPCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBFFElectrostaticCalculationUFF; _Alloc = std::allocator<OpenBabel::OBFFElectrostaticCalculationUFF>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBFFElectrostaticCalculationUFF>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBForceFieldUFF::SetupElectrostatics()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFElectrostaticCalculationUFF*, std::vector<OpenBabel::OBFFElectrostaticCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/conformer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/conformer.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/forcefields/forcefielduff.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldUFF::SetupCalculations()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFBondCalculationUFF*, std::vector<OpenBabel::OBFFBondCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFAngleCalculationUFF*, std::vector<OpenBabel::OBFFAngleCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFTorsionCalculationUFF*, std::vector<OpenBabel::OBFFTorsionCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFOOPCalculationUFF*, std::vector<OpenBabel::OBFFOOPCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBFFVDWCalculationUFF*, std::vector<OpenBabel::OBFFVDWCalculationUFF> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PubChemFormat::DoElement(const string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/xml.h:21,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/pubchem.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PubChemFormat::EndElement(const string&)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
[ 32%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pubchem.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBForceFieldUFF::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opalign.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp
[ 33%] Linking CXX shared module ../../lib/pubchem.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.o CMakeFiles/pubchem.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 33%] Built target pubchem
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 33%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cmlformat.dir/xml/cmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/op.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opalign.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OpAlign::Do(OpenBabel::OBBase*, const char*, OpenBabel::OBOp::OpMap*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 34%] Linking CXX shared module ../lib/plugin_forcefields.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Built target plugin_forcefields
[ 34%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_charges.dir/charges/qtpie.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp
[ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/plugin_ops.dir/ops/opconfab.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/opconfab.cpp
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cdxmlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cdxmlformat.cpp
[ 35%] Linking CXX shared module ../lib/plugin_ops.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.o CMakeFiles/plugin_ops.dir/ops/addinindex.o CMakeFiles/plugin_ops.dir/ops/addpolarh.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.o CMakeFiles/plugin_ops.dir/ops/canonical.o CMakeFiles/plugin_ops.dir/ops/changecell.o CMakeFiles/plugin_ops.dir/ops/delpolarh.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.o CMakeFiles/plugin_ops.dir/ops/gen2D.o CMakeFiles/plugin_ops.dir/ops/fillUC.o CMakeFiles/plugin_ops.dir/ops/forcefield.o CMakeFiles/plugin_ops.dir/ops/gen3d.o CMakeFiles/plugin_ops.dir/ops/largest.o CMakeFiles/plugin_ops.dir/ops/loader.o CMakeFiles/plugin_ops.dir/ops/opsplit.o CMakeFiles/plugin_ops.dir/ops/optransform.o CMakeFiles/plugin_ops.dir/ops/partialcharges.o CMakeFiles/plugin_ops.dir/ops/readconformers.o CMakeFiles/plugin_ops.dir/ops/sort.o CMakeFiles/plugin_ops.dir/ops/opisomorph.o CMakeFiles/plugin_ops.dir/ops/ophighlight.o CMakeFiles/plugin_ops.dir/ops/xout.o CMakeFiles/plugin_ops.dir/ops/conformer.o CMakeFiles/plugin_ops.dir/ops/opalign.o CMakeFiles/plugin_ops.dir/ops/opconfab.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/cmlformat.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Built target plugin_ops
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color=
Scanning dependencies of target png2format
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 35%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/png2format.dir/png2format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/png2format.cpp
[ 35%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cdxmlformat.dir/xml/xml.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xml/xml.cpp
[ 35%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/png2format.dir/__/depict/cairopainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/cairopainter.cpp
[ 36%] Linking CXX shared module ../../lib/cdxmlformat.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.o CMakeFiles/cdxmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/png2format.so CMakeFiles/png2format.dir/png2format.o CMakeFiles/png2format.dir/__/depict/cairopainter.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xtcformat.so CMakeFiles/xtcformat.dir/xtcformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 37%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemdrawcdx.cpp
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xyzformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xyzformat.dir/xyzformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xyzformat.cpp
[ 38%] Linking CXX shared module ../../lib/cmlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.o CMakeFiles/cmlformat.dir/xml/xml.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm -lxml2 ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target cmlformat
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xedformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xedformat.dir/xedformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xedformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = Eigen::Matrix<double, 3, 1>; _Alloc = std::allocator<Eigen::Matrix<double, 3, 1> >]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<Eigen::Matrix<double, 3, 1> >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::QTPIECharges::ParseParamFile()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Matrix<double, 3, 1>*, std::vector<Eigen::Matrix<double, 3, 1> > >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX shared module ../../lib/xyzformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 38%] Built target xyzformat
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
Scanning dependencies of target unichemformat
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[ 39%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/unichemformat.dir/unichemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/unichemformat.cpp
[ 39%] Linking CXX shared module ../../lib/xedformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xedformat.so CMakeFiles/xedformat.dir/xedformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmileyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smileyformat.dir/smileyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smileyformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausscubeformat.dir/gausscubeformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp
[ 39%] Linking CXX shared module ../../lib/chemdrawcdx.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 39%] Built target chemdrawcdx
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target cacaoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cacaoformat.dir/cacaoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cacaoformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 39%] Linking CXX shared module ../../lib/cacaoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Built target cacaoformat
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color=
Scanning dependencies of target tinkerformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 39%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/tinkerformat.dir/tinkerformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/tinkerformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausscubeformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBGaussianCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 40%] Linking CXX shared module ../../lib/smileyformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 40%] Built target smileyformat
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target thermoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 40%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/thermoformat.dir/thermoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/thermoformat.cpp
[ 41%] Linking CXX shared module ../../lib/tinkerformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Built target tinkerformat
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target orcaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/orcaformat.dir/orcaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp
[ 41%] Linking CXX shared module ../../lib/gausscubeformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Built target gausscubeformat
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
Scanning dependencies of target moldenformat
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/dlhandler.h:25,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/plugin.h:23,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/chargemodel.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.h:22,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/charges/qtpie.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QTPIECharges::ComputeCharges(OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/moldenformat.dir/moldenformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp
[ 41%] Linking CXX shared module ../../lib/thermoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Built target thermoformat
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
Scanning dependencies of target turbomoleformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/turbomoleformat.dir/turbomoleformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/turbomoleformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, std::vector<_Tp, _Alloc>::value_type) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/moldenformat.cpp:29:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBMoldenFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/orcaformat.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OrcaOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 41%] Linking CXX shared module ../../lib/turbomoleformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 42%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/groformat.dir/groformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/groformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp: In member function 'std::string OpenBabel::MCDLFormat::constring(int (*)[4], char*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp:209:31: warning: '%s' directive writing up to 99 bytes into a region of size 82 [-Wformat-overflow=]
209 | sprintf(line,"%s%d",semis,icons[j]);
| ^~ ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MCDLformat.cpp:21:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 111 bytes into a destination of size 82
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Linking CXX shared module ../../lib/orcaformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Built target orcaformat
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pwscfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pwscfformat.dir/pwscfformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pwscfformat.cpp
[ 43%] Linking CXX shared module ../../lib/groformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/groformat.so CMakeFiles/groformat.dir/groformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Linking CXX shared module ../lib/plugin_charges.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1
[ 43%] Built target groformat
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.o CMakeFiles/plugin_charges.dir/charges/gasteiger.o CMakeFiles/plugin_charges.dir/charges/none.o CMakeFiles/plugin_charges.dir/charges/mmff94.o CMakeFiles/plugin_charges.dir/charges/fromfile.o CMakeFiles/plugin_charges.dir/charges/eqeq.o CMakeFiles/plugin_charges.dir/charges/qeq.o CMakeFiles/plugin_charges.dir/charges/qtpie.o -lm -ldl -lz ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mopacformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mopacformat.dir/mopacformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp
[ 43%] Linking CXX shared module ../../lib/pwscfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 43%] Built target plugin_charges
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
Scanning dependencies of target carformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcarformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/carformat.dir/carformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/carformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 43%] Built target pwscfformat
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pdbqtformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbqtformat.dir/pdbqtformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 44%] Linking CXX shared module ../../lib/carformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/carformat.so CMakeFiles/carformat.dir/carformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mopacformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MOPACFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Built target carformat
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
Scanning dependencies of target aoforceformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/aoforceformat.dir/aoforceformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OpenBabel::OBAtom*, std::ostream&, unsigned int)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:334:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
334 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:351:60: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
351 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 44%] Linking CXX shared module ../../lib/mopacformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/aoforceformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::AoforceFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Built target mopacformat
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mpdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpdformat.dir/mpdformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mpdformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbqtformat.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 44%] Linking CXX shared module ../../lib/aoforceformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Built target aoforceformat
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gausszmatformat
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make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build
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[ 44%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gausszmatformat.dir/gausszmatformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausszmatformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target shelxformat
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[ 45%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dshelxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/shelxformat.dir/shelxformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/shelxformat.cpp
[ 46%] Linking CXX shared module ../../lib/mpdformat.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
Scanning dependencies of target nwchemformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nwchemformat.dir/nwchemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp
[ 46%] Linking CXX shared module ../../lib/pdbqtformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gausszmatformat.cpp:16:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target pdbqtformat
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target xsfformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual bool OpenBabel::GaussianZMatrixInputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 46%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/xsfformat.dir/xsfformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp
[ 46%] Linking CXX shared module ../../lib/shelxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 46%] Built target shelxformat
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target siestaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/siestaformat.dir/siestaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/siestaformat.cpp
[ 47%] Linking CXX shared module ../../lib/gausszmatformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadZTSCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Built target gausszmatformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
Scanning dependencies of target confabreport
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/confabreport.dir/confabreport.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadPartialCharges(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/xsfformat.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::XSFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBOrbital; _Alloc = std::allocator<OpenBabel::OBOrbital>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBOrbital>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nwchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadNEBCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Linking CXX shared module ../../lib/xsfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadOrbitals(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBOrbital*, std::vector<OpenBabel::OBOrbital> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Built target xsfformat
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
Scanning dependencies of target zindoformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/zindoformat.dir/zindoformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/zindoformat.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadTDDFTCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadFrequencyCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadMEPCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/ring.h:24,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:50,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function 'void OpenBabel::ConfabReport::WriteOutput(std::ostream&)':
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::NWChemOutputFormat::ReadGeometryOptimizationCalculation(std::istream*, OpenBabel::OBMol*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/confabreport.cpp:34:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::ConfabReport::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 47%] Linking CXX shared module ../../lib/siestaformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 48%] Linking CXX shared module ../../lib/zindoformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/copyformat.dir/copyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/copyformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/copyformat.so CMakeFiles/copyformat.dir/copyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color=
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[ 50%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/opendxformat.dir/opendxformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/opendxformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fchkformat.cpp:21:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fchkformat.cpp:21:
/usr/include/c++/9/bits/stl_vector.h: In static member function 'static bool OpenBabel::FCHKFormat::read_numbers(const char*, std::vector<_Tp>&, unsigned int) [with T = double]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crystal09format.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::Crystal09Format::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gaussformat.dir/gaussformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/opendxformat.cpp:24:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
[ 51%] Linking CXX shared module ../../lib/crystal09format.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/opendxformat.cpp:24:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::OBOpenDXCubeFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 51%] Built target crystal09format
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
Scanning dependencies of target nulformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 51%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/nulformat.dir/nulformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/nulformat.cpp
[ 51%] Linking CXX shared module ../../lib/opendxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
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[ 51%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/inchiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/inchiformat.cpp
[ 51%] Linking CXX shared module ../../lib/nulformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/nulformat.so CMakeFiles/nulformat.dir/nulformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 51%] Built target nulformat
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
[ 52%] Linking CXX shared module ../../lib/fchkformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1
Scanning dependencies of target asciiformat
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make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 52%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/asciiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/asciiformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 52%] Built target fchkformat
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color=
Scanning dependencies of target molreport
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 53%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/molreport.dir/molreport.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molreport.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 54%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/asciipainter.cpp
[ 54%] Linking CXX shared module ../../lib/molreport.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molreport.so CMakeFiles/molreport.dir/molreport.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 54%] Built target molreport
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
Scanning dependencies of target painterformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 54%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/painterformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/painterformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gaussformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 54%] Linking CXX shared module ../../lib/asciiformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 54%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/depict/commandpainter.cpp
[ 54%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/getinchi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/getinchi.cpp
[ 55%] Linking CXX shared module ../../lib/painterformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/painterformat.so CMakeFiles/painterformat.dir/painterformat.o CMakeFiles/painterformat.dir/__/depict/commandpainter.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
Scanning dependencies of target MNAformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 55%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/MNAformat.dir/MNAformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/MNAformat.cpp
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
Scanning dependencies of target mol2format
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make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 55%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mol2format.dir/mol2format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp
[ 55%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/inchiformat.dir/__/ops/unique.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/ops/unique.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp: In member function 'virtual bool OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:677:40: warning: '%-6s' directive output may be truncated writing between 6 and 32767 bytes into a region of size between 32756 and 32760 [-Wformat-truncation=]
677 | snprintf(buffer,BUFF_SIZE,"%7d %-6s %9.4f %9.4f %9.4f %-5s %3s %-8s %9.4f",
| ^~~~
678 | atom->GetIdx(),label,
| ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output 77 or more bytes (assuming 98361) into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:702:51: warning: '%2s' directive output may be truncated writing between 2 and 32767 bytes into a region of size between 32730 and 32747 [-Wformat-truncation=]
702 | snprintf(buffer, BUFF_SIZE,"%6d %5d %5d %2s",
| ^~~
703 | bond->GetIdx()+1,bond->GetBeginAtomIdx(),bond->GetEndAtomIdx(),
704 | label);
| ~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mol2format.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 24 and 32806 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX shared module ../../lib/gaussformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 56%] Linking CXX shared module ../../lib/MNAformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 56%] Built target gaussformat
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
[ 57%] Linking CXX shared module ../../lib/inchiformat.so
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Scanning dependencies of target stlformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.o CMakeFiles/inchiformat.dir/getinchi.o CMakeFiles/inchiformat.dir/__/ops/unique.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 57%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/stlformat.dir/stlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp
[ 57%] Built target MNAformat
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 57%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/qchemformat.dir/qchemformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 57%] Built target inchiformat
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
Scanning dependencies of target dmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 57%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dmolformat.dir/dmolformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dmolformat.cpp
[ 58%] Linking CXX shared module ../../lib/mol2format.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mol2format.so CMakeFiles/mol2format.dir/mol2format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target mol2format
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
Scanning dependencies of target boxformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/boxformat.dir/boxformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/boxformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::Triangle; _Alloc = std::allocator<OpenBabel::Triangle>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::Triangle>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/stlformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In function 'void OpenBabel::map_sphere(std::vector<OpenBabel::Triangle>&, OpenBabel::vector3, double, uint16_t)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::Triangle*, std::vector<OpenBabel::Triangle> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
[ 58%] Linking CXX shared module ../../lib/stlformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/stlformat.so CMakeFiles/stlformat.dir/stlformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target stlformat
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color=
Scanning dependencies of target featformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/featformat.dir/featformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/featformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/qchemformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::QChemOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../lib/dmolformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target dmolformat
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
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[ 58%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pdbformat.dir/pdbformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp
[ 58%] Linking CXX shared module ../../lib/boxformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/boxformat.so CMakeFiles/boxformat.dir/boxformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
Scanning dependencies of target rxnformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/rxnformat.dir/rxnformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/rxnformat.cpp
[ 58%] Linking CXX shared module ../../lib/qchemformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target qchemformat
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
Scanning dependencies of target pcmodelformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pcmodelformat.dir/pcmodelformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pcmodelformat.cpp
[ 58%] Linking CXX shared module ../../lib/featformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/featformat.so CMakeFiles/featformat.dir/featformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target featformat
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
Scanning dependencies of target castepformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/castepformat.dir/castepformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/castepformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:623:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
623 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:641:70: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
641 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:678:35: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=]
678 | snprintf(scharge, 3, "%+d", charge);
| ^~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:678:34: note: directive argument in the range [-32768, 32767]
678 | snprintf(scharge, 3, "%+d", charge);
| ^~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pdbformat.cpp:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 58%] Linking CXX shared module ../../lib/pcmodelformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target pcmodelformat
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
Scanning dependencies of target titleformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/titleformat.dir/titleformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/titleformat.cpp
[ 58%] Linking CXX shared module ../../lib/rxnformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 59%] Linking CXX shared module ../../lib/castepformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/castepformat.so CMakeFiles/castepformat.dir/castepformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 59%] Built target rxnformat
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acrformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 59%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/acrformat.dir/acrformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acrformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 59%] Built target castepformat
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
Scanning dependencies of target povrayformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 60%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/povrayformat.dir/povrayformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/povrayformat.cpp
[ 60%] Linking CXX shared module ../../lib/pdbformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
Scanning dependencies of target chemdrawct
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make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 61%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemdrawct.dir/chemdrawct.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemdrawct.cpp
[ 61%] Linking CXX shared module ../../lib/titleformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/titleformat.so CMakeFiles/titleformat.dir/titleformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mmcifformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 61%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmcifformat.dir/mmcifformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmcifformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acrformat.so CMakeFiles/acrformat.dir/acrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gulpformat
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gulpformat.dir/gulpformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gulpformat.cpp
[ 62%] Linking CXX shared module ../../lib/chemdrawct.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color=
Scanning dependencies of target APIInterface
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/APIInterface.dir/APIInterface.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/APIInterface.cpp
[ 62%] Linking CXX shared module ../../lib/APIInterface.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 62%] Built target APIInterface
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
Scanning dependencies of target gamessformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gamessformat.dir/gamessformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp
[ 62%] Linking CXX shared module ../../lib/povrayformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Built target povrayformat
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fastsearchformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastsearchformat.dir/fastsearchformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmcifformat.cpp:19:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Linking CXX shared module ../../lib/gulpformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Built target gulpformat
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual bool OpenBabel::mmCIFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
Scanning dependencies of target fhiaimsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp:15:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastsearchformat.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void OpenBabel::FastSearchFormat::AddPattern(std::vector<OpenBabel::OBMol>&, OpenBabel::OBMol, int)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhiaimsformat.cpp:15:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::FHIaimsFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::FastSearchFormat::ObtainTarget(OpenBabel::OBConversion*, std::vector<OpenBabel::OBMol>&, const string&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::FastSearchFormat::ReadChemObject(OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 63%] Linking CXX shared module ../../lib/fhiaimsformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1
[ 63%] Linking CXX shared module ../../lib/mmcifformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Built target fhiaimsformat
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
[ 63%] Built target mmcifformat
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
Scanning dependencies of target svgformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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Scanning dependencies of target reportformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build
[ 63%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/svgformat.dir/svgformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/svgformat.cpp
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 64%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/reportformat.dir/reportformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/reportformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessformat.cpp:19:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/vaspformat.dir/vaspformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/outformat.so CMakeFiles/outformat.dir/outformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color=
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[ 66%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cacheformat.dir/cacheformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cacheformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
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[ 66%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemkinformat.dir/chemkinformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemkinformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/adfformat.cpp:30:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBT41Format::AtomData; _Alloc = std::allocator<OpenBabel::OBT41Format::AtomData>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBT41Format::AtomData>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 66%] Linking CXX shared module ../../lib/cacheformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/adfformat.cpp:30:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::OBT41Format::ReadASCII(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBT41Format::AtomData*, std::vector<OpenBabel::OBT41Format::AtomData> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator<OpenBabel::matrix3x3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
[ 66%] Built target cacheformat
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
Scanning dependencies of target acesformat
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/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::matrix3x3; _Alloc = std::allocator<OpenBabel::matrix3x3>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<OpenBabel::matrix3x3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/acesformat.dir/acesformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/vaspformat.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::matrix3x3*, std::vector<OpenBabel::matrix3x3> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 66%] Linking CXX shared module ../../lib/adfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/adfformat.so CMakeFiles/adfformat.dir/adfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/CSRformat.dir/CSRformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/acesformat.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::AcesOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:494,
from /usr/include/c++/9/cstring:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:26,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:45,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp:17:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'char* OpenBabel::CSRFormat::PadString(char*, int)' at /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp:188:12:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp: In member function 'char* OpenBabel::CSRFormat::PadString(char*, int)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/CSRformat.cpp:188:12: note: length computed here
188 | strncpy(output, input, strlen(input));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Linking CXX shared module ../../lib/acesformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/acesformat.so CMakeFiles/acesformat.dir/acesformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 66%] Linking CXX shared module ../../lib/CSRformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target acesformat
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color=
Scanning dependencies of target yasaraformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/yasaraformat.dir/yasaraformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp
[ 66%] Built target CSRformat
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mdffformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdffformat.dir/mdffformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp:562:36: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=]
562 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); }
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/yasaraformat.cpp:34:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Linking CXX shared module ../../lib/vaspformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target vaspformat
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
[ 66%] Linking CXX shared module ../../lib/yasaraformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1
Scanning dependencies of target PQSformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 66%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/PQSformat.dir/PQSformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/PQSformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target yasaraformat
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = OpenBabel::atm_t_prop; _Alloc = std::allocator<OpenBabel::atm_t_prop>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<OpenBabel::atm_t_prop>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::atm_t_prop*, std::vector<OpenBabel::atm_t_prop> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
Scanning dependencies of target alchemyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/alchemyformat.dir/alchemyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/alchemyformat.cpp
[ 66%] Linking CXX shared module ../../lib/chemkinformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MDFFFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:977:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::atm_t_prop*, std::vector<OpenBabel::atm_t_prop> >' changed in GCC 7.1
977 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target chemkinformat
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
Scanning dependencies of target amberformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 67%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/amberformat.dir/amberformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/amberformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdffformat.cpp:17:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'virtual bool OpenBabel::MDFFFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 67%] Linking CXX shared module ../../lib/alchemyformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mmodformat.dir/mmodformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mmodformat.cpp
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make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color=
Scanning dependencies of target bgfformat
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bgfformat.dir/bgfformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/bgfformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/amberformat.so CMakeFiles/amberformat.dir/amberformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
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[ 69%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcccformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cccformat.dir/cccformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cccformat.cpp
[ 69%] Linking CXX shared module ../../lib/bgfformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Linking CXX shared module ../../lib/mmodformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1
[ 69%] Built target bgfformat
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
Scanning dependencies of target viewmolformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/viewmolformat.dir/viewmolformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/viewmolformat.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Built target mmodformat
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
Scanning dependencies of target molproformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/molproformat.dir/molproformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp
[ 69%] Linking CXX shared module ../../lib/cccformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cccformat.so CMakeFiles/cccformat.dir/cccformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesForce(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Built target cccformat
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color=
Scanning dependencies of target chem3dformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 69%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchem3dformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chem3dformat.dir/chem3dformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::GAMESSUKOutputFormat::ReadNormalModesHessian(OpenBabel::OBMol&, std::istream&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp: In static member function 'static bool OpenBabel::CHEM3D1Format::WriteChem3d(std::ostream&, OpenBabel::OBMol&, const char*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:298:52: warning: '%d' directive output may be truncated writing between 1 and 10 bytes into a region of size 4 [-Wformat-truncation=]
298 | snprintf(type_name, sizeof(type_num), "%d",type_num);
| ^~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:298:51: note: directive argument in the range [-536870912, 536873461]
298 | snprintf(type_name, sizeof(type_num), "%d",type_num);
| ^~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chem3dformat.cpp:18:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 4
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX shared module ../../lib/viewmolformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gamessukformat.cpp:14:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Built target viewmolformat
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
Scanning dependencies of target hinformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/hinformat.dir/hinformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/hinformat.cpp
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/stl_tree.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadVariables(std::istream&, double, std::string)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/molproformat.cpp:20:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::MolproOutputFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadLineCartesian(OpenBabel::OBAtom*, std::vector<std::__cxx11::basic_string<char> >&, double)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 71%] Linking CXX shared module ../../lib/chem3dformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color=
Scanning dependencies of target chemtoolformat
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make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/chemtoolformat.dir/chemtoolformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/chemtoolformat.cpp
/usr/include/c++/9/bits/stl_tree.h: In member function 'bool OpenBabel::GAMESSUKFormat::ReadLineZmatrix(OpenBabel::OBMol&, OpenBabel::OBAtom*, std::vector<std::__cxx11::basic_string<char> >&, double, int*)':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 71%] Linking CXX shared module ../../lib/molproformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/molproformat.so CMakeFiles/molproformat.dir/molproformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 71%] Built target molproformat
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cssrformat.dir/cssrformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cssrformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/hinformat.so CMakeFiles/hinformat.dir/hinformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lmpdatformat.dir/lmpdatformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Built target chemtoolformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pqrformat.dir/pqrformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp
[ 71%] Linking CXX shared module ../../lib/gamessukformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Built target gamessukformat
[ 71%] Linking CXX shared module ../../lib/cssrformat.so
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
Scanning dependencies of target dlpolyformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/dlpolyformat.dir/dlpolyformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Built target cssrformat
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color=
Scanning dependencies of target exyzformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/exyzformat.dir/exyzformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/exyzformat.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:501:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
501 | snprintf(type_name, sizeof(type_name), " %-3s", tmp);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:518:66: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=]
518 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp);
| ^~~~ ~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = double; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp: In member function 'virtual bool OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:528:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
528 | "%-4d %4d %4d %4d %4d %4d # %11s\n",
| ^~~~
......
535 | DihedralString);
| ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:510:38: warning: '%11s' directive output may be truncated writing between 11 and 32767 bytes into a region of size between 32695 and 32736 [-Wformat-truncation=]
510 | "%-4d %4d %4d %4d %4d %4d # %11s\n",
| ^~~~
......
517 | DihedralString);
| ~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 45 and 32842 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:468:33: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
468 | "%-4d %4d %4d %4d %4d # %8s\n",
| ^~~
......
474 | AngleString);
| ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:452:33: warning: '%8s' directive output may be truncated writing between 8 and 32767 bytes into a region of size between 32707 and 32741 [-Wformat-truncation=]
452 | "%-4d %4d %4d %4d %4d # %8s\n",
| ^~~
......
458 | AngleString);
| ~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 37 and 32830 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:415:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
415 | "%-4d %4d %4d %4d # %5s\n",
| ^~~
......
420 | BondString);
| ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:401:29: warning: '%5s' directive output may be truncated writing between 5 and 32767 bytes into a region of size between 32719 and 32746 [-Wformat-truncation=]
401 | "%-4d %4d %4d %4d # %5s\n",
| ^~~
......
406 | BondString);
| ~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 29 and 32818 bytes into a destination of size 32768
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lmpdatformat.cpp:15:
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp:14:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pqrformat.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PQRFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 72%] Linking CXX shared module ../../lib/pqrformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Built target pqrformat
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fastaformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fastaformat.dir/fastaformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fastaformat.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/dlpolyformat.cpp:14:
/usr/include/c++/9/bits/stl_vector.h: In member function 'bool OpenBabel::DlpolyInputReader::ReadAtom(std::istream&, OpenBabel::OBMol&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 72%] Linking CXX shared module ../../lib/lmpdatformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Built target lmpdatformat
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
Scanning dependencies of target smilesformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/smilesformat.dir/smilesformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp
[ 73%] Linking CXX shared module ../../lib/exyzformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fhformat.dir/fhformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fhformat.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color=
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 73%] Built target fastaformat
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
Scanning dependencies of target abinitformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/abinitformat.dir/abinitformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp
[ 74%] Linking CXX shared module ../../lib/fhformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fhformat.so CMakeFiles/fhformat.dir/fhformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 74%] Built target fhformat
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
Scanning dependencies of target fpsformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 74%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/fpsformat.dir/fpsformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/fpsformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp:16:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/abinitformat.cpp:16:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::ABINITFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 74%] Linking CXX shared module ../../lib/fingerprintformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 74%] Built target fingerprintformat
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color=
Scanning dependencies of target crkformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector<OpenBabel::OBAtom*>&, std::vector<unsigned int>&, char*, bool)':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:2989:20: warning: '%d' directive writing between 1 and 5 bytes into a region of size 4 [-Wformat-overflow=]
2989 | sprintf(iso,"%d",atom->GetIsotope());
| ^~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:2989:19: note: directive argument in the range [1, 65535]
2989 | sprintf(iso,"%d",atom->GetIsotope());
| ^~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 6 bytes into a destination of size 4
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:3037:29: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=]
3037 | sprintf(tcount,"%d", hcount);
| ^
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/smilesformat.cpp:22:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/crkformat.dir/crkformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/crkformat.cpp
[ 74%] Linking CXX shared module ../../lib/abinitformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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[ 74%] Built target abinitformat
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
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[ 74%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/gromos96format.dir/gromos96format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/gromos96format.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
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[ 75%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/freefracformat.dir/freefracformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/freefracformat.cpp
[ 75%] Linking CXX shared module ../../lib/gromos96format.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
Scanning dependencies of target lpmdformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/lpmdformat.dir/lpmdformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp
[ 76%] Linking CXX shared module ../../lib/crkformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/crkformat.so CMakeFiles/crkformat.dir/crkformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Built target crkformat
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mdlformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mdlformat.dir/mdlformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp
[ 76%] Linking CXX shared module ../../lib/freefracformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Built target freefracformat
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
Scanning dependencies of target ghemicalformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/ghemicalformat.dir/ghemicalformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/ghemicalformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp:15:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/lpmdformat.cpp:15:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::LpmdFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../lib/ghemicalformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Built target ghemicalformat
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
Scanning dependencies of target mpqcformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/mpqcformat.dir/mpqcformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mpqcformat.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:1652:27: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=]
1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
| ^~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:1652:22: note: directive argument in the range [-2147483648, 2147483547]
1652 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday,
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:867,
from /usr/include/c++/9/cstdio:42,
from /usr/include/c++/9/fstream:41,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/tokenst.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/base.h:29,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/atom.h:33,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:42,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/mdlformat.cpp:30:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11
67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
68 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 76%] Linking CXX shared module ../../lib/mpqcformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Built target mpqcformat
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
Scanning dependencies of target msiformat
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 76%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/msiformat.dir/msiformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/msiformat.cpp
[ 76%] Linking CXX shared module ../../lib/lpmdformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/cifformat.dir/cifformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cifformat.cpp
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/msiformat.so CMakeFiles/msiformat.dir/msiformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color=
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[ 78%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.o
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/pointcloudformat.dir/pointcloudformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/c++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/cairo -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/inchi -I/usr/include/libxml2 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/balstformat.dir/balstformat.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/balstformat.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In function 'bool OpenBabel::conditional_add(std::vector<OpenBabel::vector3>&, OpenBabel::vector3, double)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/pointcloudformat.cpp:28:
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual bool OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 78%] Linking CXX shared module ../../lib/balstformat.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/balstformat.so CMakeFiles/balstformat.dir/balstformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotamer.dir/obrotamer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrotamer.cpp
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obprop.dir/obprop.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obprop.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obabel.dir/obabel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:104:29: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
104 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:104:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
104 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obabel.cpp:411:55: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
411 | cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- "
| ^~~~~~~~
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412 | << __TIME__ << endl;
| ^~~~~~~~
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obfit.dir/obfit.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obfit.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obabel.dir/obabel.o -o ../bin/obabel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprop.dir/obprop.o -o ../bin/obprop ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
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[ 81%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obprobe.dir/obprobe.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obprobe.cpp
[ 81%] Built target obprop
make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --color=
Scanning dependencies of target obtautomer
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 81%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obtautomer.dir/obtautomer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obtautomer.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:36,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/obmolecformat.h:37,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/cifformat.cpp:20:
/usr/include/c++/9/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique_(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const _Val&, _NodeGen&) [with _NodeGen = std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::_Alloc_node; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, double>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> >]':
/usr/include/c++/9/bits/stl_tree.h:2248:7: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
2248 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function 'void OpenBabel::CIFData::ExtractCharges()':
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
/usr/include/c++/9/bits/stl_tree.h:1157:43: note: parameter passing for argument of type 'std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, double>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, double> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, double> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, double> >'} changed in GCC 7.1
1157 | return _M_insert_unique_(__pos, __x, __an);
| ^
[ 81%] Linking CXX executable ../bin/obfit
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obfit.dir/obfit.o -o ../bin/obfit ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/babel.dir/DependInfo.cmake --color=
Scanning dependencies of target babel
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make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 81%] Building CXX object tools/CMakeFiles/babel.dir/babel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/babel.dir/babel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:107:29: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
107 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:107:51: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
107 | << __DATE__ << " -- " << __TIME__ << endl;
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:422:55: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
422 | cout << "Open Babel " << BABEL_VERSION << " -- " << __DATE__ << " -- "
| ^~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/babel.cpp:423:11: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
423 | << __TIME__ << endl;
| ^~~~~~~~
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obtautomer.dir/obtautomer.o -o ../bin/obtautomer ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obminimize.dir/obminimize.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obminimize.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obprobe.dir/obprobe.o -o ../bin/obprobe ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obenergy.dir/obenergy.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obenergy.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/babel.dir/babel.o -o ../bin/babel ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color=
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[ 83%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrotate.dir/obrotate.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrotate.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obminimize.dir/obminimize.o -o ../bin/obminimize ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obsym.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obsym.dir/obsym.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obsym.cpp
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obenergy.dir/obenergy.o -o ../bin/obenergy ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 83%] Building CXX object tools/CMakeFiles/obchiral.dir/obchiral.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obchiral.dir/obchiral.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obchiral.cpp
[ 83%] Linking CXX executable ../bin/obrotate
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrotate.dir/obrotate.o -o ../bin/obrotate ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
[ 84%] Linking CXX executable ../bin/obsym
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/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obsym.dir/obsym.o -o ../bin/obsym ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obdistgen.dir/obdistgen.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obdistgen.cpp
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrms.dir/DependInfo.cmake --color=
Scanning dependencies of target obrms
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make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 84%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obrms.dir/obrms.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obrms.cpp
[ 84%] Linking CXX executable ../bin/obchiral
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obchiral.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obchiral.dir/obchiral.o -o ../bin/obchiral ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 84%] Built target obchiral
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color=
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[ 84%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgen.dir/obgen.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obgen.cpp
[ 84%] Linking CXX shared module ../../lib/cifformat.so
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../../lib/cifformat.so CMakeFiles/cifformat.dir/cifformat.o -lm -ldl -lz -lcairo libinchi/libinchi.a -lm ../../lib/libopenbabel.so.5.0.0 -lcairo -lc -lm -ldl -lz
[ 84%] Linking CXX executable ../bin/obrms
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obrms.dir/obrms.o -o ../bin/obrms ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 84%] Built target cifformat
make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
[ 84%] Linking CXX executable ../bin/obdistgen
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obdistgen.dir/obdistgen.o -o ../bin/obdistgen ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 85%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obconformer.dir/obconformer.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obconformer.cpp
[ 85%] Built target obrms
make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color=
Scanning dependencies of target obspectrophore
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[ 85%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obspectrophore.dir/obspectrophore.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obspectrophore.cpp
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[ 85%] Built target obdistgen
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
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[ 85%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obthermo.dir/obthermo.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obthermo.cpp
[ 85%] Linking CXX executable ../bin/obgen
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgen.dir/obgen.o -o ../bin/obgen ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 85%] Built target obgen
make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color=
Scanning dependencies of target obgrep
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[ 85%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgrep.dir/obgrep.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools/obgrep.cpp
[ 85%] Linking CXX executable ../bin/obconformer
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obconformer.dir/obconformer.o -o ../bin/obconformer ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1
[ 85%] Built target obconformer
make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color=
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obthermo.dir/obthermo.o -o ../bin/obthermo ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
Scanning dependencies of target obgui
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/OBGUI.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/OBGUI.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 85%] Built target obthermo
make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color=
Scanning dependencies of target test_inchiwrite
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 86%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_inchiwrite.dir/inchiwrite.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/inchiwrite.cpp
[ 87%] Linking CXX executable ../bin/obgrep
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgrep.dir/obgrep.o -o ../bin/obgrep ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 87%] Built target obgrep
[ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/stdwx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/stdwx.cpp
[ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/getinchi.cpp
[ 87%] Linking CXX executable ../bin/obspectrophore
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.o -o ../bin/obspectrophore ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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[ 87%] Built target obspectrophore
[ 87%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/. -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/obgui.dir/optswx.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI/optswx.cpp
[ 87%] Linking CXX executable ../bin/test_inchiwrite
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.o -o ../bin/test_inchiwrite ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Built target test_inchiwrite
make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/roundtrip.dir/DependInfo.cmake --color=
Scanning dependencies of target roundtrip
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/roundtrip.dir/roundtrip.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/roundtrip.cpp
[ 87%] Linking CXX executable ../bin/roundtrip
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/roundtrip.dir/roundtrip.o -o ../bin/roundtrip ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_runner.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Built target roundtrip
make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake --color=
Scanning dependencies of target test_runner
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make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/test_runner.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/test_runner.cpp
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/aligntest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp
Scanning dependencies of target bindings_perl
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_perl_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/python2.7 -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aligntest.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void test_bug()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void test_simpleAlign()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void test_QCP()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 87%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/automorphismtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/automorphismtest.cpp
make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color=
Scanning dependencies of target bindings_python
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 87%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbindings_python_EXPORTS -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/usr/include/python2.7 -I/usr/lib/arm-linux-gnueabihf/perl/5.30/CORE -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -fPIC -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -o CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/buildertest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/buildertest.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/canonconsistenttest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/canonconsistenttest.cpp
[ 88%] Linking CXX executable ../../bin/obgui
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/obgui.dir/OBGUI.o CMakeFiles/obgui.dir/stdwx.o CMakeFiles/obgui.dir/optswx.o -o ../../bin/obgui ../../lib/libopenbabel.so.5.0.0 -L/usr/lib/arm-linux-gnueabihf -pthread -lwx_baseu-3.0 -lwx_gtk2u_core-3.0 -lwx_gtk2u_adv-3.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 88%] Built target obgui
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/canonstabletest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/canonstabletest.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/carspacegrouptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/carspacegrouptest.cpp
[ 88%] Building CXX object test/CMakeFiles/test_runner.dir/cifspacegrouptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cifspacegrouptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cifspacegrouptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cistranstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cistranstest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/graphsymtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/graphsymtest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/gziptest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/gziptest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/implicitHtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/implicitHtest.cpp
[ 89%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.o
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/lssrtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/lssrtest.cpp
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/isomorphismtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/isomorphismtest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/multicmltest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/multicmltest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/regressionstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/regressionstest.cpp
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/rotortest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 90%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/shuffletest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/shuffletest.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h:34,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.h:7,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/rotortest.cpp:1:
/usr/include/c++/9/bits/stl_vector.h: In function 'void testOBRotorGetSet()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void testOBRotorSetRotor()':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smilestest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smilestest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/spectrophoretest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/spectrophoretest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/squareplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/squareplanartest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/stereotest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/stereotest.cpp
[ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/stereoperceptiontest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/stereoperceptiontest.cpp
In file included from /usr/include/string.h:494,
from /usr/include/python2.7/Python.h:38,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:177:
In function 'char* strncpy(char*, const char*, size_t)',
inlined from 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))' at /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:61098:16:
/usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp: In function 'void SWIG_Python_addvarlink(PyObject*, char*, PyObject* (*)(), int (*)(PyObject*))':
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:61095:27: note: length computed here
61095 | size_t size = strlen(name)+1;
| ~~~~~~^~~~~~
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tautomertest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tautomertest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetrahedraltest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetrahedraltest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetranonplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetranonplanartest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/tetraplanartest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/tetraplanartest.cpp
[ 92%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/uniqueidtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/uniqueidtest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/aromatest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/aromatest.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/atom.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/atom.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/atom.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/bond.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/bond.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/bond.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cansmi.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cansmi.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/charge_mmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/charge_mmff94.cpp
[ 93%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/charge_gasteiger.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/charge_gasteiger.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/conversion.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/conversion.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/datatest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/datatest.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffgaff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffgaff.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffghemical.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffghemical.cpp
[ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffmmff94.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffmmff94.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ffuff.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ffuff.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/formalcharge.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/formalcharge.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/format.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/format.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/format.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formula.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/formula.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/formula.cpp
[ 95%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/internalcoord.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/internalcoord.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/invalidsmarts.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/invalidsmarts.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/invalidsmiles.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/invalidsmiles.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/iterators.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/iterators.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/logp_psa.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/logp_psa.cpp
[ 96%] Building CXX object test/CMakeFiles/test_runner.dir/math.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/math.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/math.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/mol.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/mol.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/phmodel.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/phmodel.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/residue.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/residue.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/residue.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/ringtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/ringtest.cpp
[ 97%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smartstest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smartstest.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smartsparse.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smartsparse.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/smilesmatch.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/smilesmatch.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/unitcell.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/unitcell.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/cmlreadfile.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/cmlreadfile.cpp
[ 98%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.o
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/c++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/include -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/data -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include -I/usr/include/eigen3 -I/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -isystem /usr/lib/arm-linux-gnueabihf/wx/include/gtk2-unicode-3.0 -isystem /usr/include/wx-3.0 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -DOB_MODULE_PATH="\"/usr/lib/openbabel/2.4.1\"" -DTESTDATADIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/files/\"" -DFORMATDIR="\"/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib//\"" -DTESTDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/test -o CMakeFiles/test_runner.dir/obtest.o -c /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test/obtest.cpp
[ 99%] Linking CXX executable ../bin/test_runner
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -rdynamic CMakeFiles/test_runner.dir/test_runner.o CMakeFiles/test_runner.dir/aligntest.o CMakeFiles/test_runner.dir/automorphismtest.o CMakeFiles/test_runner.dir/buildertest.o CMakeFiles/test_runner.dir/canonconsistenttest.o CMakeFiles/test_runner.dir/canonstabletest.o CMakeFiles/test_runner.dir/carspacegrouptest.o CMakeFiles/test_runner.dir/cifspacegrouptest.o CMakeFiles/test_runner.dir/cistranstest.o CMakeFiles/test_runner.dir/graphsymtest.o CMakeFiles/test_runner.dir/gziptest.o CMakeFiles/test_runner.dir/implicitHtest.o CMakeFiles/test_runner.dir/lssrtest.o CMakeFiles/test_runner.dir/isomorphismtest.o CMakeFiles/test_runner.dir/multicmltest.o CMakeFiles/test_runner.dir/regressionstest.o CMakeFiles/test_runner.dir/rotortest.o CMakeFiles/test_runner.dir/shuffletest.o CMakeFiles/test_runner.dir/smilestest.o CMakeFiles/test_runner.dir/spectrophoretest.o CMakeFiles/test_runner.dir/squareplanartest.o CMakeFiles/test_runner.dir/stereotest.o CMakeFiles/test_runner.dir/stereoperceptiontest.o CMakeFiles/test_runner.dir/tautomertest.o CMakeFiles/test_runner.dir/tetrahedraltest.o CMakeFiles/test_runner.dir/tetranonplanartest.o CMakeFiles/test_runner.dir/tetraplanartest.o CMakeFiles/test_runner.dir/uniqueidtest.o CMakeFiles/test_runner.dir/aromatest.o CMakeFiles/test_runner.dir/atom.o CMakeFiles/test_runner.dir/bond.o CMakeFiles/test_runner.dir/cansmi.o CMakeFiles/test_runner.dir/charge_mmff94.o CMakeFiles/test_runner.dir/charge_gasteiger.o CMakeFiles/test_runner.dir/conversion.o CMakeFiles/test_runner.dir/datatest.o CMakeFiles/test_runner.dir/ffgaff.o CMakeFiles/test_runner.dir/ffghemical.o CMakeFiles/test_runner.dir/ffmmff94.o CMakeFiles/test_runner.dir/ffuff.o CMakeFiles/test_runner.dir/formalcharge.o CMakeFiles/test_runner.dir/format.o CMakeFiles/test_runner.dir/formula.o CMakeFiles/test_runner.dir/internalcoord.o CMakeFiles/test_runner.dir/invalidsmarts.o CMakeFiles/test_runner.dir/invalidsmiles.o CMakeFiles/test_runner.dir/iterators.o CMakeFiles/test_runner.dir/logp_psa.o CMakeFiles/test_runner.dir/math.o CMakeFiles/test_runner.dir/mol.o CMakeFiles/test_runner.dir/phmodel.o CMakeFiles/test_runner.dir/residue.o CMakeFiles/test_runner.dir/ringtest.o CMakeFiles/test_runner.dir/smartstest.o CMakeFiles/test_runner.dir/smartsparse.o CMakeFiles/test_runner.dir/smilesmatch.o CMakeFiles/test_runner.dir/unitcell.o CMakeFiles/test_runner.dir/cmlreadfile.o CMakeFiles/test_runner.dir/obtest.o -o ../bin/test_runner ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
make[4]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 99%] Built target test_runner
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
184 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:184:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:171:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
171 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_OBMol_Sg____setitem____SWIG_1(std::vector<OpenBabel::OBMol>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_OpenBabel_vector3_Sg____setitem____SWIG_1(std::vector<OpenBabel::vector3>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'void std_vector_Sl_double_Sg____setitem____SWIG_1(std::vector<double>*, PySliceObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delslice__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorDouble___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorVector3___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___getitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'PyObject* _wrap_vectorOBMol___delitem__(PyObject*, PyObject*)':
/usr/include/c++/9/bits/stl_vector.h:1431:35: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1431 | { return _M_erase(__position); }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<double>; Difference = int; InputSeq = std::vector<double>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >; _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::vector3>; Difference = int; InputSeq = std::vector<OpenBabel::vector3>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >; _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/stl_vector.h: In function 'void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector<OpenBabel::OBMol>; Difference = int; InputSeq = std::vector<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1462:40: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1462 | { return _M_erase(__first, __last); }
| ^
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python/openbabel-python.cpp:3403:
/usr/include/c++/9/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<double>; T = double]':
/usr/include/c++/9/bits/vector.tcc:163:2: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
163 | _M_realloc_insert(__position, __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In static member function 'static int swig::traits_asptr_stdseq<Seq, T>::asptr(PyObject*, swig::traits_asptr_stdseq<Seq, T>::sequence**) [with Seq = std::vector<OpenBabel::vector3>; T = OpenBabel::vector3]':
/usr/include/c++/9/bits/vector.tcc:163:2: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
163 | _M_realloc_insert(__position, __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'void swig::assign(const SwigPySeq&, Seq*) [with SwigPySeq = swig::SwigPySequence_Cont<OpenBabel::OBMol>; Seq = std::vector<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:163:2: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
163 | _M_realloc_insert(__position, __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBConformerData_SetEnergies(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBRotationData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_VectorDouble_size(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_new_VectorDouble__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBGridData_SetValues(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetEDipole(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetRotatoryStrengthsVelocity(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetRotatoryStrengthsLength(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBFFParameter__dpar_set(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBElectronicTransitionData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBVibrationData_SetData__SWIG_0(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBDOSData_SetData(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBVibrationData_SetData__SWIG_1(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::vector3; _Alloc = std::allocator<OpenBabel::vector3>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::vector3>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_new_VectorVector3__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_VectorVector3_size(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::vector3*, std::vector<OpenBabel::vector3> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = OpenBabel::OBMol; _Alloc = std::allocator<OpenBabel::OBMol>]':
/usr/include/c++/9/bits/vector.tcc:431:5: note: parameter passing for argument of type 'std::vector<OpenBabel::OBMol>::iterator' {aka '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >'} changed in GCC 7.1
431 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/oberror.h:28,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/math/matrix3x3.h:27,
from /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/perl/openbabel-perl.cpp:1769:
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_new_VectorOBMol__SWIG_3(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_VectorOBMol_size(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<OpenBabel::OBMol*, std::vector<OpenBabel::OBMol> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadClosedShellOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadAlphaOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void _wrap_OBOrbitalData_LoadBetaOrbitals(PerlInterpreter*, CV*)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[100%] Linking CXX shared module ../lib/_openbabel.so
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_python.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/_openbabel.so CMakeFiles/bindings_python.dir/python/openbabel-python.cpp.o -lpython2.7 ../lib/libopenbabel.so.5.0.0 -lm -ldl -lz
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/openbabel-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -fopenmp -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -o ../lib/OpenBabel.so CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o /usr/lib/arm-linux-gnueabihf/libperl.so.5.30 ../lib/libopenbabel.so.5.0.0 -ldl -lm -lpthread -lc -lcrypt -lm -ldl -lz
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Scanning dependencies of target docs
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg && /usr/bin/doxygen /<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile
warning: Tag `SYMBOL_CACHE_SIZE' at line 336 of file `/<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
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warning: Tag `XML_DTD' at line 1428 of file `/<<BUILDDIR>>/openbabel-2.4.1+dfsg/Doxyfile' has become obsolete.
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/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetraplanar.h:38: warning: multiple use of section label 'Combinations' while adding section, (first occurrence: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/stereo/tetranonplanar.h, line 41)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/bitvec.cpp:402: warning: documented symbol `OBBitVec & operator &=' was not declared or defined.
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/confsearch.cpp:332: warning: documented symbol `int DiverseConfGen' was not declared or defined.
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp:957: warning: no matching file member found for
bool expand_kekulize_lssr(OpenBabel::OBMol *mol, std::vector< int > &atomState, std::vector< int > &bondState, std::vector< OpenBabel::OBRing * > &lssr, std::vector< bool > &lssrAssigned, std::vector< OBBond * > &bondsThisRing)
Possible candidates:
'bool expand_kekulize_lssr(OBMol *mol, std::vector< int > &atomState, std::vector< int > &bondState, std::vector< OBRing *> &lssr, std::vector< bool > &lssrAssigned, std::vector< OBBond *> &bondsThisRing)' at line 100 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/kekulize.cpp
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp:439: warning: no matching file member found for
void InternalToCartesian(std::vector< OpenBabel::OBInternalCoord * > &vic, OBMol &mol)
Possible candidates:
'void InternalToCartesian(std::vector< OBInternalCoord *> &, OBMol &)' at line 742 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/obutil.cpp:542: warning: no matching file member found for
void CartesianToInternal(std::vector< OpenBabel::OBInternalCoord * > &vic, OBMol &mol)
Possible candidates:
'void CartesianToInternal(std::vector< OBInternalCoord *> &, OBMol &)' at line 740 of file/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/mol.h
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data_utilities.h:55: warning: The following parameters of OpenBabel::extract_thermochemistry(OpenBabel::OBMol &mol, bool bVerbose, int *Nsymm, int Nrotbonds, double dbdt, double *temperature, double *DeltaHf0, double *DeltaHfT, double *DeltaGfT, double *DeltaSfT, double *S0T, double *CVT, double *CPT, std::vector< double > &Scomponents) are not documented:
parameter 'Nrotbonds'
parameter 'dbdt'
parameter 'CPT'
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:314: warning: argument 'Unnamed' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::ParseLine(const char *line)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:317: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::ParseLine(const char *line) are not documented:
parameter 'line'
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:318: warning: argument 'dhof1' of command @param is not found in the argument list of OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T)
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/include/openbabel/data.h:330: warning: The following parameters of OpenBabel::OBAtomicHeatOfFormationTable::GetHeatOfFormation(std::string elem, int charge, std::string method, double T, double *dhof0, double *dhofT, double *S0T) are not documented:
parameter 'dhofT'
sh: 1: latex: not found
error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
sh: 1: dvips: not found
error: Problems running dvips. Check your installation!
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debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
BABEL_LIBDIR=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib \
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Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
Start 1: test_align_1
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Start 46: test_graphsym_5
43/160 Test #46: test_graphsym_5 .................. Passed 0.13 sec
Start 47: test_gzip_1
44/160 Test #47: test_gzip_1 ...................... Passed 0.55 sec
Start 48: test_implicitH_1
45/160 Test #48: test_implicitH_1 ................. Passed 0.15 sec
Start 49: test_lssr_1
46/160 Test #49: test_lssr_1 ...................... Passed 0.38 sec
Start 50: test_lssr_2
47/160 Test #50: test_lssr_2 ...................... Passed 9.52 sec
Start 51: test_lssr_3
48/160 Test #51: test_lssr_3 ...................... Passed 3.05 sec
Start 52: test_lssr_4
49/160 Test #52: test_lssr_4 ...................... Passed 2.21 sec
Start 53: test_lssr_5
50/160 Test #53: test_lssr_5 ...................... Passed 0.20 sec
Start 54: test_isomorphism_1
51/160 Test #54: test_isomorphism_1 ............... Passed 0.13 sec
Start 55: test_isomorphism_2
52/160 Test #55: test_isomorphism_2 ............... Passed 0.12 sec
Start 56: test_isomorphism_3
53/160 Test #56: test_isomorphism_3 ............... Passed 0.12 sec
Start 57: test_isomorphism_4
54/160 Test #57: test_isomorphism_4 ............... Passed 0.20 sec
Start 58: test_isomorphism_5
55/160 Test #58: test_isomorphism_5 ............... Passed 0.20 sec
Start 59: test_isomorphism_6
56/160 Test #59: test_isomorphism_6 ............... Passed 0.22 sec
Start 60: test_isomorphism_7
57/160 Test #60: test_isomorphism_7 ............... Passed 0.17 sec
Start 61: test_isomorphism_8
58/160 Test #61: test_isomorphism_8 ............... Passed 0.12 sec
Start 62: test_multicml_1
59/160 Test #62: test_multicml_1 .................. Passed 0.13 sec
Start 63: test_regressions_1
60/160 Test #24: test_canonstable_1 ............... Passed 38.46 sec
Start 64: test_regressions_221
61/160 Test #17: test_builder_2 ................... Passed 178.17 sec
Start 65: test_regressions_222
62/160 Test #65: test_regressions_222 ............. Passed 0.12 sec
Start 66: test_regressions_223
63/160 Test #66: test_regressions_223 ............. Passed 0.12 sec
Start 67: test_regressions_224
64/160 Test #67: test_regressions_224 ............. Passed 0.13 sec
Start 68: test_rotor_1
65/160 Test #68: test_rotor_1 ..................... Passed 0.02 sec
Start 69: test_rotor_2
66/160 Test #69: test_rotor_2 ..................... Passed 0.12 sec
Start 70: test_rotor_3
67/160 Test #70: test_rotor_3 ..................... Passed 0.12 sec
Start 71: test_rotor_4
68/160 Test #71: test_rotor_4 ..................... Passed 0.13 sec
Start 72: test_shuffle_1
69/160 Test #72: test_shuffle_1 ................... Passed 1.55 sec
Start 73: test_shuffle_2
70/160 Test #73: test_shuffle_2 ................... Passed 2.20 sec
Start 74: test_shuffle_3
71/160 Test #74: test_shuffle_3 ................... Passed 0.79 sec
Start 75: test_shuffle_4
72/160 Test #75: test_shuffle_4 ................... Passed 0.29 sec
Start 76: test_shuffle_5
73/160 Test #76: test_shuffle_5 ................... Passed 0.75 sec
Start 77: test_smiles_1
74/160 Test #77: test_smiles_1 .................... Passed 0.13 sec
Start 78: test_smiles_2
75/160 Test #78: test_smiles_2 .................... Passed 0.13 sec
Start 79: test_smiles_3
76/160 Test #79: test_smiles_3 .................... Passed 0.18 sec
Start 80: test_spectrophore_1
77/160 Test #80: test_spectrophore_1 .............. Passed 1.71 sec
Start 81: test_spectrophore_2
78/160 Test #81: test_spectrophore_2 .............. Passed 0.10 sec
Start 82: test_spectrophore_3
79/160 Test #82: test_spectrophore_3 .............. Passed 0.10 sec
Start 83: test_spectrophore_4
80/160 Test #83: test_spectrophore_4 .............. Passed 0.12 sec
Start 84: test_spectrophore_5
81/160 Test #84: test_spectrophore_5 .............. Passed 0.10 sec
Start 85: test_squareplanar_1
82/160 Test #85: test_squareplanar_1 .............. Passed 0.02 sec
Start 86: test_squareplanar_2
83/160 Test #86: test_squareplanar_2 .............. Passed 0.02 sec
Start 87: test_squareplanar_3
84/160 Test #87: test_squareplanar_3 .............. Passed 0.02 sec
Start 88: test_squareplanar_4
85/160 Test #88: test_squareplanar_4 .............. Passed 0.02 sec
Start 89: test_squareplanar_5
86/160 Test #89: test_squareplanar_5 .............. Passed 0.02 sec
Start 90: test_stereo_1
87/160 Test #90: test_stereo_1 .................... Passed 0.02 sec
Start 91: test_stereo_2
88/160 Test #91: test_stereo_2 .................... Passed 0.02 sec
Start 92: test_stereo_3
89/160 Test #92: test_stereo_3 .................... Passed 0.02 sec
Start 93: test_stereo_4
90/160 Test #93: test_stereo_4 .................... Passed 0.02 sec
Start 94: test_stereo_5
91/160 Test #94: test_stereo_5 .................... Passed 0.02 sec
Start 95: test_stereo_6
92/160 Test #95: test_stereo_6 .................... Passed 0.59 sec
Start 96: test_stereoperception_1
93/160 Test #96: test_stereoperception_1 .......... Passed 0.13 sec
Start 97: test_stereoperception_2
94/160 Test #97: test_stereoperception_2 .......... Passed 0.13 sec
Start 98: test_stereoperception_3
95/160 Test #98: test_stereoperception_3 .......... Passed 0.14 sec
Start 99: test_stereoperception_4
96/160 Test #99: test_stereoperception_4 .......... Passed 0.12 sec
Start 100: test_tautomer_1
97/160 Test #100: test_tautomer_1 .................. Passed 0.12 sec
Start 101: test_tautomer_2
98/160 Test #101: test_tautomer_2 .................. Passed 0.18 sec
Start 102: test_tetrahedral_1
99/160 Test #102: test_tetrahedral_1 ............... Passed 0.02 sec
Start 103: test_tetrahedral_2
100/160 Test #103: test_tetrahedral_2 ............... Passed 0.02 sec
Start 104: test_tetrahedral_3
101/160 Test #104: test_tetrahedral_3 ............... Passed 0.02 sec
Start 105: test_tetrahedral_4
102/160 Test #105: test_tetrahedral_4 ............... Passed 0.02 sec
Start 106: test_tetrahedral_5
103/160 Test #106: test_tetrahedral_5 ............... Passed 0.02 sec
Start 107: test_tetranonplanar_1
104/160 Test #107: test_tetranonplanar_1 ............ Passed 0.02 sec
Start 108: test_tetraplanar_1
105/160 Test #108: test_tetraplanar_1 ............... Passed 0.02 sec
Start 109: test_uniqueid_1
106/160 Test #109: test_uniqueid_1 .................. Passed 0.02 sec
Start 110: test_uniqueid_2
107/160 Test #110: test_uniqueid_2 .................. Passed 0.02 sec
Start 111: test_aromatest_1
108/160 Test #111: test_aromatest_1 ................. Passed 0.16 sec
Start 112: test_atom_1
109/160 Test #112: test_atom_1 ...................... Passed 0.02 sec
Start 113: test_atom_2
110/160 Test #113: test_atom_2 ...................... Passed 0.02 sec
Start 114: test_atom_3
111/160 Test #114: test_atom_3 ...................... Passed 0.02 sec
Start 115: test_atom_4
112/160 Test #115: test_atom_4 ...................... Passed 0.02 sec
Start 116: test_bond_1
113/160 Test #116: test_bond_1 ...................... Passed 0.02 sec
Start 117: test_cansmi_1
114/160 Test #117: test_cansmi_1 .................... Passed 3.37 sec
Start 118: test_charge_mmff94_1
115/160 Test #118: test_charge_mmff94_1 ............. Passed 0.50 sec
Start 119: test_charge_gasteiger_1
116/160 Test #119: test_charge_gasteiger_1 .......... Passed 0.23 sec
Start 120: test_conversion_1
117/160 Test #120: test_conversion_1 ................ Passed 0.13 sec
Start 121: test_datatest_1
118/160 Test #121: test_datatest_1 .................. Passed 0.02 sec
Start 122: test_ffgaff_1
119/160 Test #122: test_ffgaff_1 .................... Passed 2.70 sec
Start 123: test_ffghemical_1
120/160 Test #123: test_ffghemical_1 ................ Passed 2.36 sec
Start 124: test_ffmmff94_1
121/160 Test #124: test_ffmmff94_1 .................. Passed 92.98 sec
Start 125: test_ffmmff94_2
122/160 Test #125: test_ffmmff94_2 .................. Passed 22.28 sec
Start 126: test_ffuff_1
123/160 Test #126: test_ffuff_1 ..................... Passed 2.12 sec
Start 127: test_formalcharge_1
124/160 Test #127: test_formalcharge_1 .............. Passed 0.44 sec
Start 128: test_format_1
125/160 Test #128: test_format_1 .................... Passed 0.12 sec
Start 129: test_formula_1
126/160 Test #129: test_formula_1 ................... Passed 0.49 sec
Start 130: test_internalcoord_1
127/160 Test #130: test_internalcoord_1 ............. Passed 0.02 sec
Start 131: test_invalidsmarts_1
128/160 Test #131: test_invalidsmarts_1 ............. Passed 0.02 sec
Start 132: test_invalidsmiles_1
129/160 Test #132: test_invalidsmiles_1 ............. Passed 0.02 sec
Start 133: test_iterators_1
130/160 Test #133: test_iterators_1 ................. Passed 0.46 sec
Start 134: test_logp_psa_1
131/160 Test #134: test_logp_psa_1 .................. Passed 0.13 sec
Start 135: test_math_1
132/160 Test #135: test_math_1 ...................... Passed 0.32 sec
Start 136: test_math_2
133/160 Test #136: test_math_2 ...................... Passed 0.17 sec
Start 137: test_math_3
134/160 Test #137: test_math_3 ...................... Passed 0.03 sec
Start 138: test_math_4
135/160 Test #138: test_math_4 ...................... Passed 0.13 sec
Start 139: test_mol_1
136/160 Test #139: test_mol_1 ....................... Passed 0.13 sec
Start 140: test_phmodel_1
137/160 Test #140: test_phmodel_1 ................... Passed 0.18 sec
Start 141: test_residue_1
138/160 Test #141: test_residue_1 ................... Passed 0.15 sec
Start 142: test_ringtest_1
139/160 Test #142: test_ringtest_1 .................. Passed 0.56 sec
Start 143: test_smartstest_1
140/160 Test #143: test_smartstest_1 ................ Passed 0.64 sec
Start 144: test_smartsparse_1
141/160 Test #144: test_smartsparse_1 ............... Passed 0.02 sec
Start 145: test_smilesmatch_1
142/160 Test #145: test_smilesmatch_1 ............... Passed 2.42 sec
Start 146: test_unitcell_1
143/160 Test #146: test_unitcell_1 .................. Passed 0.02 sec
Start 147: test_cmlreadfile_1
144/160 Test #147: test_cmlreadfile_1 ............... Passed 0.13 sec
Start 148: inchiSamples.sdf_Test
145/160 Test #148: inchiSamples.sdf_Test ............ Passed 0.38 sec
Start 149: inchiSamplesTechMan.sdf_Test
146/160 Test #149: inchiSamplesTechMan.sdf_Test ..... Passed 0.23 sec
Start 150: inchiSteffen_PubChem.smi_Test
147/160 Test #16: test_builder_1 ................... Passed 346.17 sec
Start 151: pytest_babel
148/160 Test #151: pytest_babel ..................... Passed 0.21 sec
Start 152: pytest_sym
149/160 Test #63: test_regressions_1 ...............Child aborted***Exception: 1001.35 sec
terminate called after throwing an instance of 'std::length_error'
what(): basic_string::_M_create
Start 153: pytest_smartssym
150/160 Test #153: pytest_smartssym ................. Passed 5.11 sec
Start 154: pytest_fastsearch
151/160 Test #154: pytest_fastsearch ................ Passed 0.46 sec
Start 155: pytest_unique
152/160 Test #155: pytest_unique .................... Passed 1.37 sec
Start 156: pytest_kekule
153/160 Test #156: pytest_kekule .................... Passed 2.78 sec
Start 157: pytest_pdbformat
154/160 Test #157: pytest_pdbformat ................. Passed 0.21 sec
Start 158: pybindtest_bindings
155/160 Test #158: pybindtest_bindings .............. Passed 0.60 sec
Start 159: pybindtest__pybel
156/160 Test #64: test_regressions_221 .............Child aborted***Exception: 1036.23 sec
terminate called after throwing an instance of 'std::length_error'
what(): basic_string::_M_create
Start 160: pybindtest_example
157/160 Test #160: pybindtest_example ............... Passed 0.31 sec
158/160 Test #159: pybindtest__pybel ................ Passed 119.14 sec
159/160 Test #150: inchiSteffen_PubChem.smi_Test ....***Timeout 1500.10 sec
==============================
*** Open Babel Warning in InChI code
#8 :Salt was disconnected;
==============================
*** Open Babel Warning in InChI code
#30 :Salt was disconnected;
160/160 Test #152: pytest_sym .......................***Timeout 1500.03 sec
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts/python:/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/lib
98% tests passed, 4 tests failed out of 160
Total Test time (real) = 1846.81 sec
The following tests FAILED:
63 - test_regressions_1 (Child aborted)
64 - test_regressions_221 (Child aborted)
150 - inchiSteffen_PubChem.smi_Test (Timeout)
152 - pytest_sym (Timeout)
Errors while running CTest
make[2]: *** [Makefile:121: test] Error 8
make[2]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
dh_auto_test: cd builddir && make -j4 test ARGS\+=-j4 returned exit code 2
make[1]: [debian/rules:57: override_dh_auto_test] Error 255 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with=python2 --builddirectory=/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir
dh_testroot -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_prep -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_auto_install -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
cd builddir && make -j4 install DESTDIR=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
/usr/bin/cmake -S/<<BUILDDIR>>/openbabel-2.4.1+dfsg -B/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/libinchi/CMakeFiles/inchi.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build
[ 8%] Built target inchi
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/CMakeFiles/openbabel.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 22%] Built target openbabel
make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake --color=
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make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build
[ 24%] Built target plugin_forcefields
[ 24%] Built target plugin_fingerprints
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend
[ 26%] Built target plugin_descriptors
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/CMakeFiles/plugin_ops.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 31%] Built target plugin_ops
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build
make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cmlreactformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xmlformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build
[ 33%] Built target xmlformat
[ 33%] Built target cmlreactformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/CMakeFiles/plugin_charges.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pubchem.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 34%] Built target plugin_charges
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake --color=
[ 35%] Built target pubchem
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build
make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xtcformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build
[ 35%] Built target cmlformat
[ 36%] Built target cdxmlformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xtcformat.dir/build.make src/formats/CMakeFiles/xtcformat.dir/build
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xtcformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 36%] Built target png2format
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build
[ 36%] Built target xtcformat
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rsmiformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemdrawcdx.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build
[ 37%] Built target rsmiformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xyzformat.dir/build'.
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[ 37%] Built target chemdrawcdx
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xedformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake --color=
[ 38%] Built target xyzformat
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build
[ 38%] Built target xedformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/unichemformat.dir/build'.
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make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/smileyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build
[ 39%] Built target unichemformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake --color=
[ 40%] Built target smileyformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gausscubeformat.dir/build'.
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make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake --color=
[ 40%] Built target gausscubeformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 40%] Built target cacaoformat
make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 41%] Built target tinkerformat
make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake --color=
[ 41%] Built target thermoformat
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/orcaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/moldenformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake --color=
[ 42%] Built target orcaformat
[ 42%] Built target moldenformat
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend
make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/turbomoleformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/MCDLformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build
make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build
[ 42%] Built target turbomoleformat
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend
[ 43%] Built target MCDLformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/groformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pwscfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake --color=
[ 44%] Built target groformat
[ 44%] Built target pwscfformat
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mopacformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/carformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build
make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build
[ 44%] Built target mopacformat
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbqtformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 44%] Built target carformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake --color=
make[3]: Nothing to be done for 'src/formats/CMakeFiles/aoforceformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake --color=
[ 44%] Built target aoforceformat
[ 45%] Built target pdbqtformat
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mpdformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gausszmatformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build
make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build
[ 46%] Built target mpdformat
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake --color=
[ 46%] Built target gausszmatformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nwchemformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/shelxformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake --color=
[ 47%] Built target nwchemformat
[ 47%] Built target shelxformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/xsfformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/siestaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 47%] Built target xsfformat
make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build
make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/zindoformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake --color=
[ 48%] Built target siestaformat
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/confabreport.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 49%] Built target zindoformat
make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fchkformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake --color=
[ 51%] Built target crystal09format
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake --color=
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[ 51%] Built target daltonformat
make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake --color=
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 52%] Built target opendxformat
make[3]: Nothing to be done for 'src/formats/CMakeFiles/nulformat.dir/build'.
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make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake --color=
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[ 53%] Built target gaussformat
make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 53%] Built target nulformat
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build
[ 54%] Built target inchiformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build
make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build
[ 55%] Built target asciiformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/painterformat.dir/build'.
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make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 56%] Built target molreport
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 57%] Built target painterformat
make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build
[ 57%] Built target MNAformat
make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/mol2format.dir/build'.
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make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build
[ 58%] Built target mol2format
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/qchemformat.dir/build'.
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make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build
[ 58%] Built target stlformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target qchemformat
make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target dmolformat
make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/featformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build
[ 58%] Built target boxformat
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend
[ 58%] Built target featformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pdbformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/rxnformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target pdbformat
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 58%] Built target rxnformat
make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pcmodelformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/castepformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build
[ 58%] Built target pcmodelformat
[ 59%] Built target castepformat
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend
make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake --color=
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/titleformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/acrformat.dir/build'.
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[ 59%] Built target titleformat
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake --color=
[ 60%] Built target acrformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build
[ 61%] Built target povrayformat
[ 62%] Built target chemdrawct
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build
[ 62%] Built target mmcifformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build
[ 62%] Built target gulpformat
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/APIInterface.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 62%] Built target APIInterface
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build
make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build
[ 62%] Built target gamessformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Nothing to be done for 'src/formats/CMakeFiles/fhiaimsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build
[ 63%] Built target fastsearchformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Built target fhiaimsformat
make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 63%] Built target svgformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend
[ 64%] Built target reportformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/textformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pngformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 64%] Built target textformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend
make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build
[ 65%] Built target pngformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/jaguarformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/outformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build
[ 65%] Built target jaguarformat
make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake --color=
[ 65%] Built target outformat
make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/adfformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 65%] Built target adfformat
make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 65%] Built target vaspformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build
[ 66%] Built target cacheformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend
[ 66%] Built target chemkinformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target acesformat
make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 66%] Built target CSRformat
make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake --color=
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build
[ 66%] Built target yasaraformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/PQSformat.dir/build'.
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[ 66%] Built target mdffformat
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/alchemyformat.dir/build'.
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make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake --color=
[ 66%] Built target PQSformat
[ 66%] Built target alchemyformat
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/amberformat.dir/build'.
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make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build
[ 67%] Built target amberformat
make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/bgfformat.dir/build'.
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gamessukformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 67%] Built target mmodformat
make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake --color=
[ 68%] Built target bgfformat
[ 69%] Built target gamessukformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend
make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cccformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build
make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build
[ 69%] Built target cccformat
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chem3dformat.dir/build'.
[ 70%] Built target viewmolformat
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake --color=
[ 70%] Built target molproformat
[ 70%] Built target chem3dformat
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/hinformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/chemtoolformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build
make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build
[ 71%] Built target hinformat
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/lmpdatformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/cssrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 71%] Built target chemtoolformat
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake --color=
[ 71%] Built target lmpdatformat
[ 71%] Built target cssrformat
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/pqrformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/dlpolyformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build
[ 71%] Built target pqrformat
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fastaformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/exyzformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 72%] Built target dlpolyformat
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake --color=
[ 73%] Built target exyzformat
[ 73%] Built target fastaformat
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/smilesformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fhformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build
[ 73%] Built target smilesformat
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/abinitformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fingerprintformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 73%] Built target fhformat
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake --color=
[ 74%] Built target abinitformat
[ 74%] Built target fingerprintformat
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/fpsformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/crkformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build
make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build
[ 75%] Built target fpsformat
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/freefracformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/gromos96format.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
[ 75%] Built target crkformat
make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake --color=
[ 75%] Built target freefracformat
[ 75%] Built target gromos96format
make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend
make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make[3]: Nothing to be done for 'src/formats/CMakeFiles/lpmdformat.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build
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make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build
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[ 76%] Built target lpmdformat
make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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[ 77%] Built target mdlformat
make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake --color=
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[ 77%] Built target msiformat
make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake --color=
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make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake --color=
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make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprop.dir/DependInfo.cmake --color=
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make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obabel.dir/DependInfo.cmake --color=
[ 79%] Built target posformat
make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend
[ 79%] Built target obrotamer
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obfit.dir/DependInfo.cmake --color=
[ 80%] Built target obprop
make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obprobe.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake --color=
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[ 80%] Built target obabel
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/babel.dir/DependInfo.cmake --color=
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[ 81%] Built target obtautomer
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make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend
make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
make -f tools/CMakeFiles/babel.dir/build.make tools/CMakeFiles/babel.dir/build
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obminimize.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obenergy.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrotate.dir/DependInfo.cmake --color=
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[ 81%] Built target babel
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obsym.dir/DependInfo.cmake --color=
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[ 81%] Built target obenergy
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make -f tools/CMakeFiles/obchiral.dir/build.make tools/CMakeFiles/obchiral.dir/depend
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[ 83%] Built target obrotate
make[3]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obchiral.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obrms.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgen.dir/DependInfo.cmake --color=
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make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obconformer.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obthermo.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/tools/CMakeFiles/obgrep.dir/DependInfo.cmake --color=
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make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/roundtrip.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/test/CMakeFiles/test_runner.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake --color=
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cd /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/openbabel-2.4.1+dfsg /<<BUILDDIR>>/openbabel-2.4.1+dfsg/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts /<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake --color=
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Install the project...
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-- Install configuration: "None"
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-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/turbomoleformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/vaspformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xsfformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/zindoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/gamessukformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/orcaformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/APIInterface.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/CSRformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/PQSformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/MCDLformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/alchemyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/acrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/amberformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/balstformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/bgfformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/boxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cacaoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cacheformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/carformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cccformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chem3dformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemdrawct.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemtoolformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cifformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/crkformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cssrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/dlpolyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/exyzformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fastsearchformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fastaformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/featformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fhformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fingerprintformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/fpsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/freefracformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/ghemicalformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/gromos96format.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/groformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/lmpdatformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/lpmdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mdffformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mmcifformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mmodformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/moldenformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mpdformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/mpqcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/msiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/msmsformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/opendxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/outformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pcmodelformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pdbqtformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pointcloudformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/posformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pqrformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/shelxformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/smileyformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/stlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/thermoformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/tinkerformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/unichemformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/viewmolformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xedformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xyzformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/yasaraformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/rxnformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemdrawcdx.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/chemkinformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/rsmiformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xtcformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/png2format.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cdxmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/pubchem.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/xmlformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/openbabel/2.4.1/cmlreactformat.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/libinchi.a
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/babel
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obabel
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obchiral
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obconformer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obenergy
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obfit
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgen
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obminimize
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obprobe
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obprop
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrotamer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrotate
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obsym
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obtautomer
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obthermo
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obdistgen
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obrms
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obspectrophore
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgrep
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/obgui
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/bin/roundtrip
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/_openbabel.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/openbabel.py
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/pybel.py
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so
-- Installing: /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp/usr/lib/Chemistry/OpenBabel.pm
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg/builddir'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_install -Nlibchemistry-openbabel-perl
dh_missing --list-missing -Nlibchemistry-openbabel-perl
dh_missing: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/auto/Chemistry/OpenBabel/OpenBabel.so exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/Chemistry/OpenBabel.pm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (0), libopenbabel-dev (3), libopenbabel-doc (0), libopenbabel5 (125), openbabel (39), openbabel-dbg (0), openbabel-gui (2), python-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
mkdir -p /<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.30
mv debian/tmp/usr/lib/auto debian/tmp/usr/lib/Chemistry \
/<<BUILDDIR>>/openbabel-2.4.1+dfsg/debian/tmp//usr/lib/arm-linux-gnueabihf/perl5/5.30
dh_install -plibchemistry-openbabel-perl -Xperllocal.pod --autodest /usr/lib/arm-linux-gnueabihf/perl5/5.30
dh_missing --list-missing -plibchemistry-openbabel-perl -Xperllocal.pod
dh_missing: usr/include/inchi/inchi_api.h exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/libinchi.a exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2_EXPORTS-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2Config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/cmake/openbabel2/OpenBabel2ConfigVersion.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/man/man1/roundtrip.1 exists in debian/tmp but is not installed to anywhere
dh_missing: usr/bin/roundtrip exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: libchemistry-openbabel-perl (1), libopenbabel-dev (3), libopenbabel-doc (0), libopenbabel5 (125), openbabel (39), openbabel-dbg (0), openbabel-gui (2), python-openbabel (1)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installdocs -X.js
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installchangelogs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installexamples -X.pyc
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_installman -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_python2 -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
I: dh_python2 fs:343: renaming _openbabel.so to _openbabel.arm-linux-gnueabihf.so
/usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
'libpython%s: %s', so_version, fn)
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: _openbabel.arm-linux-gnueabihf.so
dh_installinit -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_perl -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_link -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_strip_nondeterminism -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_compress -Xusr/share/doc/libopenbabel-doc/html/ \
-Xusr/share/doc/python-openbabel/examples
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_fixperms -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_missing -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
debian/rules override_dh_strip
make[1]: Entering directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_strip --dbg-package=openbabel-dbg
make[1]: Leaving directory '/<<BUILDDIR>>/openbabel-2.4.1+dfsg'
dh_makeshlibs -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_shlibdeps -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obsym contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprobe contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obenergy contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obconformer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obspectrophore contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obthermo contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obtautomer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrms contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obfit contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotamer contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obgrep contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obdistgen contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obchiral contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obprop contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obrotate contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obabel contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/obminimize contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/openbabel/usr/bin/babel contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel/usr/bin/obsym debian/openbabel/usr/bin/obprobe debian/openbabel/usr/bin/obenergy debian/openbabel/usr/bin/obconformer debian/openbabel/usr/bin/obspectrophore debian/openbabel/usr/bin/obthermo debian/openbabel/usr/bin/obtautomer debian/openbabel/usr/bin/obgen debian/openbabel/usr/bin/obrms debian/openbabel/usr/bin/obfit debian/openbabel/usr/bin/obrotamer debian/openbabel/usr/bin/obgrep debian/openbabel/usr/bin/obdistgen debian/openbabel/usr/bin/obchiral debian/openbabel/usr/bin/obprop debian/openbabel/usr/bin/obrotate debian/openbabel/usr/bin/obabel debian/openbabel/usr/bin/obminimize debian/openbabel/usr/bin/babel were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: debian/openbabel-gui/usr/bin/obgui contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/openbabel-gui/usr/bin/obgui was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libopenbabel5/usr/lib/libopenbabel.so.5.0.0 found in none of the libraries
dh_installdeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_gencontrol -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-gencontrol: warning: package python-openbabel: substitution variable ${python:Versions} unused, but is defined
dh_md5sums -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dh_builddeb -a -O--builddirectory=/<<BUILDDIR>>/openbabel-2.4.1\+dfsg/builddir
dpkg-deb: building package 'openbabel' in '../openbabel_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'python-openbabel' in '../python-openbabel_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'openbabel-dbg' in '../openbabel-dbg_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libopenbabel-dev' in '../libopenbabel-dev_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'openbabel-gui' in '../openbabel-gui_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libopenbabel5' in '../libopenbabel5_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libchemistry-openbabel-perl' in '../libchemistry-openbabel-perl_2.4.1+dfsg-3+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../openbabel_2.4.1+dfsg-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-10-14T13:18:51Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
openbabel_2.4.1+dfsg-3+b1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Mon, 12 Nov 2018 13:24:14 +0100
Source: openbabel (2.4.1+dfsg-3)
Binary: libchemistry-openbabel-perl libopenbabel-dev libopenbabel5 openbabel openbabel-dbg openbabel-gui python-openbabel
Binary-Only: yes
Architecture: armhf
Version: 2.4.1+dfsg-3+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
libchemistry-openbabel-perl - Chemical toolbox library (perl bindings)
libopenbabel-dev - Chemical toolbox library (development files)
libopenbabel5 - Chemical toolbox library
openbabel - Chemical toolbox utilities (cli)
openbabel-dbg - Chemical toolbox library (debugging symbols)
openbabel-gui - Chemical toolbox utilities (graphical user interface)
python-openbabel - Chemical toolbox library (python bindings)
Changes:
openbabel (2.4.1+dfsg-3+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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49043a04de6d59310ec70c892dbbac5e 640868 perl optional libchemistry-openbabel-perl_2.4.1+dfsg-3+b1_armhf.deb
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4938280f13659b64cb8a1f48bea4fd0f 559880 python optional python-openbabel_2.4.1+dfsg-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libchemistry-openbabel-perl_2.4.1+dfsg-3+b1_armhf.deb
-----------------------------------------------------
new Debian package, version 2.0.
size 640868 bytes: control archive=1204 bytes.
1274 bytes, 27 lines control
491 bytes, 5 lines md5sums
Package: libchemistry-openbabel-perl
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 4012
Depends: perl (>= 5.30.0-6), perlapi-5.30.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libopenbabel5, libperl5.30 (>= 5.30.0), libstdc++6 (>= 5.2)
Section: perl
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (perl bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains Chemistry::Openbabel, the Perl binding for Open Babel.
drwxr-xr-x root/root 0 2018-11-12 12:24 ./
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/
drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/
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drwxr-xr-x root/root 0 2018-11-12 12:24 ./usr/lib/arm-linux-gnueabihf/perl5/
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libopenbabel-dev_2.4.1+dfsg-3+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 189580 bytes: control archive=3224 bytes.
1185 bytes, 28 lines control
6904 bytes, 84 lines md5sums
Package: libopenbabel-dev
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 974
Depends: libopenbabel5 (= 2.4.1+dfsg-3+b1)
Suggests: libopenbabel-doc
Section: libdevel
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (development files)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the static library and the header files.
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libopenbabel5_2.4.1+dfsg-3+b1_armhf.deb
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new Debian package, version 2.0.
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Package: libopenbabel5
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 11099
Depends: libc6 (>= 2.29), libcairo2 (>= 1.2.4), libgcc1 (>= 1:4.0), libgomp1 (>= 4.9), libstdc++6 (>= 9), libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
Conflicts: libopenbabel4
Replaces: libopenbabel4
Section: libs
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the shared library.
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openbabel-dbg_2.4.1+dfsg-3+b1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 64052452 bytes: control archive=7428 bytes.
7249 bytes, 28 lines control
15612 bytes, 148 lines md5sums
Package: openbabel-dbg
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 66510
Depends: openbabel (= 2.4.1+dfsg-3+b1) | openbabel-gui (= 2.4.1+dfsg-3+b1) | libopenbabel5 (= 2.4.1+dfsg-3+b1) | python-openbabel (= 2.4.1+dfsg-3+b1) | libchemistry-openbabel-perl (= 2.4.1+dfsg-3+b1)
Section: debug
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (debugging symbols)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the debugging symbols.
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openbabel-gui_2.4.1+dfsg-3+b1_armhf.deb
---------------------------------------
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size 89192 bytes: control archive=1180 bytes.
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354 bytes, 5 lines md5sums
Package: openbabel-gui
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 286
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Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (graphical user interface)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the openbabel GUI based on wxWidgets.
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openbabel_2.4.1+dfsg-3+b1_armhf.deb
-----------------------------------
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size 118408 bytes: control archive=2396 bytes.
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Package: openbabel
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
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Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 458
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Section: science
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox utilities (cli)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package includes the following utilities:
* babel: Convert between various chemical file formats
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* obminimize: Optimize the geometry, minimize the energy for a molecule
* obgrep: Molecular search program using SMARTS pattern
* obgen: Generate 3D coordinates for a molecule
* obprop: Print standard molecular properties
* obfit: Superimpose two molecules based on a pattern
* obrotamer: Generate conformer/rotamer coordinates
* obconformer: Generate low-energy conformers
* obchiral: Print molecular chirality information
* obrotate: Rotate dihedral angle of molecules in batch mode
* obprobe: Create electrostatic probe grid
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python-openbabel_2.4.1+dfsg-3+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
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166 bytes, 9 lines * postinst #!/bin/sh
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Package: python-openbabel
Source: openbabel (2.4.1+dfsg-3)
Version: 2.4.1+dfsg-3+b1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 3749
Depends: python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~), libc6 (>= 2.4), libgcc1 (>= 1:3.5), libopenbabel5, libpython2.7 (>= 2.7), libstdc++6 (>= 5.2)
Provides: python2.7-openbabel
Section: python
Priority: optional
Homepage: http://openbabel.sourceforge.net
Description: Chemical toolbox library (python bindings)
Open Babel is a chemical toolbox designed to speak the many languages of
chemical data. It allows one to search, convert, analyze, or store data from
molecular modeling, chemistry, solid-state materials, biochemistry, or related
areas. Features include:
.
* Hydrogen addition and deletion
* Support for Molecular Mechanics
* Support for SMARTS molecular matching syntax
* Automatic feature perception (rings, bonds, hybridization, aromaticity)
* Flexible atom typer and perception of multiple bonds from atomic coordinates
* Gasteiger-Marsili partial charge calculation
.
File formats Open Babel supports include PDB, XYZ, CIF, CML, SMILES, MDL
Molfile, ChemDraw, Gaussian, GAMESS, MOPAC and MPQC.
.
This package contains the Python binding.
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| Summary |
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Build Architecture: armhf
Build-Space: 1142440
Build-Time: 2815
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 897
Job: openbabel_2.4.1+dfsg-3
Machine Architecture: armhf
Package: openbabel
Package-Time: 3733
Source-Version: 2.4.1+dfsg-3
Space: 1142440
Status: successful
Version: 2.4.1+dfsg-3+b1
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Finished at 2019-10-14T13:18:51Z
Build needed 01:02:13, 1142440k disk space