ngs-sdk →
2.11.2-2 →
armhf → 2022-02-08 06:46:48
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| ngs-sdk 2.11.2-2 (armhf) Tue, 08 Feb 2022 06:24:16 +0000 |
+==============================================================================+
Package: ngs-sdk
Version: 2.11.2-2
Source Version: 2.11.2-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-141cc8e4-1813-4869-8108-b5137d16197b' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 28s (947 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ngs-sdk' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ngs-sdk.git
Please use:
git clone https://salsa.debian.org/med-team/ngs-sdk.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1115 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main ngs-sdk 2.11.2-2 (dsc) [2299 B]
Get:2 http://172.17.4.1/private bookworm-staging/main ngs-sdk 2.11.2-2 (tar) [1101 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main ngs-sdk 2.11.2-2 (diff) [12.0 kB]
Fetched 1115 kB in 0s (5031 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ngs-sdk-LShz9q/ngs-sdk-2.11.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ngs-sdk-LShz9q' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-77VchR/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-77VchR/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-77VchR/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2875 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 95 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (7666 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, markdown, python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, markdown, python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk
dpkg-deb: building package 'sbuild-build-depends-ngs-sdk-dummy' in '/<<BUILDDIR>>/resolver-77VchR/apt_archive/sbuild-build-depends-ngs-sdk-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ngs-sdk-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Sources [563 B]
Get:5 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ Packages [636 B]
Fetched 2532 B in 1s (3188 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ngs-sdk build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
ca-certificates-java d-shlibs dctrl-tools debhelper default-jdk
default-jdk-headless default-jre default-jre-headless devscripts
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
java-common javahelper libarchive-zip-perl libasound2 libasound2-data
libavahi-client3 libavahi-common-data libavahi-common3
libb-hooks-op-check-perl libbrotli1 libbsd0 libclass-method-modifiers-perl
libclass-xsaccessor-perl libcups2 libdbus-1-3 libdebhelper-perl
libdevel-callchecker-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1
libencode-locale-perl libexpat1 libfile-dirlist-perl libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl
libfile-which-perl libfontconfig1 libfreetype6 libgif7 libgl1
libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0
libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu67 libimport-into-perl
libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libjpeg62-turbo liblcms2-2 libllvm12 liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmd0
libmodule-runtime-perl libmoo-perl libmpdec3 libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librole-tiny-perl libsensors-config libsensors5
libsigsegv2 libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libvulkan1
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0
libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6
libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 m4 man-db
markdown maven-repo-helper media-types openjdk-11-jdk
openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-all
python3-distutils python3-lib2to3 python3-minimal python3.9
python3.9-minimal sensible-utils ucf wdiff x11-common
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make adequate at
autopkgtest bls-standalone bsd-mailx | mailx check-all-the-things
cvs-buildpackage diffoscope disorderfs dose-extra duck elpa-devscripts
faketime gnuplot how-can-i-help libauthen-sasl-perl libdbd-pg-perl
libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl
libyaml-syck-perl mmdebstrap mozilla-devscripts mutt piuparts
postgresql-client pristine-lfs quilt ratt reprotest ssh-client
svn-buildpackage w3m flit python3-build python3-tomli python3-installer
gettext-doc libasprintf-dev libgettextpo-dev groff libasound2-plugins
alsa-utils cups-common libdata-dump-perl liblcms2-utils libcrypt-ssleay-perl
libscalar-number-perl pcscd lm-sensors libtool-doc gfortran
| fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl
libauthen-ntlm-perl m4-doc apparmor less www-browser maven-debian-helper
openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra
fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei
| fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk
python3-venv python3.9-venv python3.9-doc binfmt-support wdiff-doc
Recommended packages:
dput | dupload libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl
liblist-compare-perl libstring-shellquote-perl licensecheck lintian
python3-apt python3-debian python3-magic python3-requests python3-unidiff
python3-xdg strace unzip wget | curl debian-keyring equivs libsoap-lite-perl
pristine-tar curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
libhtml-format-perl libclone-perl libnamespace-clean-perl libltdl-dev
mesa-vulkan-drivers | vulkan-icd libdata-dump-perl libhtml-form-perl
libhttp-daemon-perl libmailtools-perl libxt-dev libatk-wrapper-java-jni
fonts-dejavu-extra libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
ca-certificates-java d-shlibs dctrl-tools debhelper default-jdk
default-jdk-headless default-jre default-jre-headless devscripts
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core gettext gettext-base groff-base intltool-debian
java-common javahelper libarchive-zip-perl libasound2 libasound2-data
libavahi-client3 libavahi-common-data libavahi-common3
libb-hooks-op-check-perl libbrotli1 libbsd0 libclass-method-modifiers-perl
libclass-xsaccessor-perl libcups2 libdbus-1-3 libdebhelper-perl
libdevel-callchecker-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2
libdrm-radeon1 libdrm2 libdynaloader-functions-perl libedit2 libelf1
libencode-locale-perl libexpat1 libfile-dirlist-perl libfile-homedir-perl
libfile-listing-perl libfile-stripnondeterminism-perl libfile-touch-perl
libfile-which-perl libfontconfig1 libfreetype6 libgif7 libgl1
libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0
libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libicu67 libimport-into-perl
libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl
libjpeg62-turbo liblcms2-2 libllvm12 liblwp-mediatypes-perl
liblwp-protocol-https-perl libmagic-mgc libmagic1 libmd0
libmodule-runtime-perl libmoo-perl libmpdec3 libnet-http-perl
libnet-ssleay-perl libnspr4 libnss3 libparams-classify-perl libpcsclite1
libpipeline1 libpng16-16 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librole-tiny-perl libsensors-config libsensors5
libsigsegv2 libsub-override-perl libsub-quote-perl libtimedate-perl
libtinfo5 libtool libtry-tiny-perl libuchardet0 liburi-perl libvulkan1
libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6
libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-shm0
libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxi6
libxml2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 libz3-4 m4 man-db
markdown maven-repo-helper media-types openjdk-11-jdk
openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless openssl
patchutils perl-openssl-defaults po-debconf python3 python3-all
python3-distutils python3-lib2to3 python3-minimal python3.9
python3.9-minimal sbuild-build-depends-ngs-sdk-dummy sensible-utils ucf
wdiff x11-common
0 upgraded, 168 newly installed, 0 to remove and 95 not upgraded.
Need to get 283 MB of archives.
After this operation, 592 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-77VchR/apt_archive ./ sbuild-build-depends-ngs-sdk-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-1+rpi1 [794 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.4-1 [82.4 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-1+rpi1 [1595 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.7-1+b4 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 5.0.0 [32.5 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-1+rpi1 [1611 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.10-1+rpi1 [488 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.7-1+b4 [21.8 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.7-1+b4 [38.3 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1m-1 [815 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf java-common all 0.72 [14.5 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.12.20-3 [195 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libcups2 armhf 2.3.3op2-7+b1 [311 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libnspr4 armhf 2:4.32-3 [90.8 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libnss3 armhf 2:3.73.1-1 [1093 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libasound2-data all 1.2.6.1-1 [38.7 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libasound2 armhf 1.2.6.1-1 [318 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.3-1 [1209 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libpcsclite1 armhf 1.9.5-1 [57.6 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jre-headless armhf 11.0.13+8-1 [32.8 MB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf default-jre-headless armhf 2:1.11-72+b4 [11.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates-java all 20190909 [15.7 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get:67 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libglvnd0 armhf 1.4.0-1 [55.1 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libdrm-common all 2.4.109-2+rpi1 [15.5 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libdrm2 armhf 2.4.109-2+rpi1 [40.7 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libglapi-mesa armhf 21.2.6-1+rpi1 [83.6 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libx11-xcb1 armhf 2:1.7.2-2 [203 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxcb-glx0 armhf 1.14-3 [117 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxcb-present0 armhf 1.14-3 [101 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libxcb-sync1 armhf 1.14-3 [104 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libxfixes3 armhf 1:6.0.0-1 [21.0 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libxshmfence1 armhf 1.3-1 [8636 B]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.1 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libdrm-amdgpu1 armhf 2.4.109-2+rpi1 [28.0 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libdrm-nouveau2 armhf 2.4.109-2+rpi1 [25.6 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libdrm-radeon1 armhf 2.4.109-2+rpi1 [29.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libllvm12 armhf 1:12.0.1-17+rpi1 [17.2 MB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libvulkan1 armhf 1.2.198.1-2 [83.5 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libgl1-mesa-dri armhf 21.2.6-1+rpi1 [6394 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libglx-mesa0 armhf 21.2.6-1+rpi1 [169 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libglx0 armhf 1.4.0-1 [26.3 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libgl1 armhf 1.4.0-1 [105 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libgif7 armhf 5.1.9-2 [42.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jre armhf 11.0.13+8-1 [150 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf default-jre armhf 2:1.11-72+b4 [1044 B]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jdk-headless armhf 11.0.13+8-1 [174 MB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf default-jdk-headless armhf 2:1.11-72+b4 [1100 B]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf openjdk-11-jdk armhf 11.0.13+8-1 [7186 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf default-jdk armhf 2:1.11-72+b4 [1056 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libfile-dirlist-perl all 0.05-2 [7444 B]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libfile-touch-perl all 0.12-1 [10.5 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libio-pty-perl armhf 1:1.15-2 [36.1 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libipc-run-perl all 20200505.0-1 [102 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libclass-xsaccessor-perl armhf 1.19-3+b17 [37.6 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libimport-into-perl all 1.002005-1 [11.6 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libmoo-perl all 2.005004-3 [60.5 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libfile-listing-perl all 6.14-1 [12.4 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libhtml-parser-perl armhf 3.76-1 [102 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libhtml-tree-perl all 5.07-2 [213 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.36-1 [80.6 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf perl-openssl-defaults armhf 5 [7360 B]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libnet-ssleay-perl armhf 1.92-1 [317 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libio-socket-ssl-perl all 2.074-2 [220 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libnet-http-perl all 6.22-1 [25.3 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libwww-perl all 6.61-1 [193 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf patchutils armhf 0.4.2-1 [68.7 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libtinfo5 armhf 6.3-2 [332 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf wdiff armhf 1.2.2-2 [120 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf devscripts armhf 2.22.1 [1174 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220119 [110 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf javahelper all 0.78 [97.2 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf markdown all 1.0.1-10.1 [17.5 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf maven-repo-helper all 1.10 [142 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.9.7-1+b4 [1060 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 283 MB in 28s (10.2 MB/s)
Selecting previously unselected package libpython3.9-minimal:armhf.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../libpython3.9-minimal_3.9.10-1+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.10-1+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.4.4-1_armhf.deb ...
Unpacking libexpat1:armhf (2.4.4-1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../python3.9-minimal_3.9.10-1+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.10-1+rpi1) ...
Setting up libpython3.9-minimal:armhf (3.9.10-1+rpi1) ...
Setting up libexpat1:armhf (2.4.4-1) ...
Setting up python3.9-minimal (3.9.10-1+rpi1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 12794 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.7-1+b4_armhf.deb ...
Unpacking python3-minimal (3.9.7-1+b4) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_5.0.0_all.deb ...
Unpacking media-types (5.0.0) ...
Selecting previously unselected package libmpdec3:armhf.
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Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../3-libpython3.9-stdlib_3.9.10-1+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.10-1+rpi1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../4-python3.9_3.9.10-1+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.10-1+rpi1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../5-libpython3-stdlib_3.9.7-1+b4_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.7-1+b4) ...
Setting up python3-minimal (3.9.7-1+b4) ...
Selecting previously unselected package python3.
(Reading database ... 13194 files and directories currently installed.)
Preparing to unpack .../000-python3_3.9.7-1+b4_armhf.deb ...
Unpacking python3 (3.9.7-1+b4) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-8_armhf.deb ...
Unpacking groff-base (1.22.4-8) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../003-bsdextrautils_2.37.3-1_armhf.deb ...
Unpacking bsdextrautils (2.37.3-1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../004-libpipeline1_1.5.5-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.5-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.9.4-4_armhf.deb ...
Unpacking man-db (2.9.4-4) ...
Selecting previously unselected package sensible-utils.
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Unpacking sensible-utils (0.0.17) ...
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Unpacking libmagic-mgc (1:5.41-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../008-libmagic1_1%3a5.41-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.41-2) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.41-2_armhf.deb ...
Unpacking file (1:5.41-2) ...
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Preparing to unpack .../010-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package ucf.
Preparing to unpack .../011-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../012-libsigsegv2_2.14-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.14-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../013-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
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Unpacking autoconf (2.71-2) ...
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Unpacking autotools-dev (20180224.1+nmu1) ...
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Unpacking automake (1:1.16.5-1.1) ...
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Unpacking autopoint (0.21-4) ...
Selecting previously unselected package openssl.
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Unpacking openssl (1.1.1m-1) ...
Selecting previously unselected package ca-certificates.
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Unpacking ca-certificates (20210119) ...
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Unpacking java-common (0.72) ...
Selecting previously unselected package libavahi-common-data:armhf.
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Unpacking libavahi-common-data:armhf (0.8-5) ...
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Unpacking libavahi-common3:armhf (0.8-5) ...
Selecting previously unselected package libdbus-1-3:armhf.
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Unpacking libdbus-1-3:armhf (1.12.20-3) ...
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Unpacking libavahi-client3:armhf (0.8-5) ...
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Unpacking libcups2:armhf (2.3.3op2-7+b1) ...
Selecting previously unselected package liblcms2-2:armhf.
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Unpacking liblcms2-2:armhf (2.12~rc1-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
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Unpacking libjpeg62-turbo:armhf (1:2.1.2-1) ...
Selecting previously unselected package libbrotli1:armhf.
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Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
Selecting previously unselected package libpng16-16:armhf.
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Unpacking libpng16-16:armhf (1.6.37-3) ...
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Unpacking fontconfig-config (2.13.1-4.4) ...
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Unpacking libasound2-data (1.2.6.1-1) ...
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Selecting previously unselected package libglib2.0-0:armhf.
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Unpacking libgraphite2-3:armhf (1.3.14-1) ...
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Unpacking libharfbuzz0b:armhf (2.7.4-1) ...
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Unpacking libpcsclite1:armhf (1.9.5-1) ...
Selecting previously unselected package openjdk-11-jre-headless:armhf.
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Setting up libglvnd0:armhf (1.4.0-1) ...
Setting up libhtml-tagset-perl (3.20-4) ...
Setting up libdebhelper-perl (13.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-1) ...
Setting up libsensors-config (1:3.6.0-7) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up perl-openssl-defaults:armhf (5) ...
Setting up gettext-base (0.21-4) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.41-2) ...
Setting up libasound2-data (1.2.6.1-1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libz3-4:armhf (4.8.12-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up libnspr4:armhf (2:4.32-3) ...
Setting up libavahi-common-data:armhf (0.8-5) ...
Setting up libdbus-1-3:armhf (1.12.20-3) ...
Setting up libsigsegv2:armhf (2.14-1) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up autopoint (0.21-4) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up d-shlibs (0.104) ...
Setting up libipc-run-perl (20200505.0-1) ...
Setting up libpcsclite1:armhf (1.9.5-1) ...
Setting up libsensors5:armhf (1:3.6.0-7) ...
Setting up libglapi-mesa:armhf (21.2.6-1+rpi1) ...
Setting up libvulkan1:armhf (1.2.198.1-2) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libgif7:armhf (5.1.9-2) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up sensible-utils (0.0.17) ...
Setting up libxshmfence1:armhf (1.3-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libasound2:armhf (1.2.6.1-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libsub-quote-perl (2.006006-1) ...
Setting up libclass-xsaccessor-perl (1.19-3+b17) ...
Setting up libfile-dirlist-perl (0.05-2) ...
Setting up libfile-homedir-perl (1.006-1) ...
Setting up openssl (1.1.1m-1) ...
Setting up libbsd0:armhf (0.11.5-1) ...
Setting up libtinfo5:armhf (6.3-2) ...
Setting up libdrm-common (2.4.109-2+rpi1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up liburi-perl (5.10-1) ...
Setting up libfile-touch-perl (0.12-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up markdown (1.0.1-10.1) ...
Setting up libpython3.9-stdlib:armhf (3.9.10-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.7-1+b4) ...
Setting up libnet-ssleay-perl:armhf (1.92-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up wdiff (1.2.2-2) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libxcb-xfixes0:armhf (1.14-3) ...
Setting up libfile-listing-perl (6.14-1) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-glx0:armhf (1.14-3) ...
Setting up libedit2:armhf (3.1-20210910-1) ...
Setting up libavahi-common3:armhf (0.8-5) ...
Setting up libnet-http-perl (6.22-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libnss3:armhf (2:3.73.1-1) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxcb-present0:armhf (1.14-3) ...
Setting up patchutils (0.4.2-1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.11.1+dfsg-1) ...
Setting up libxcb-sync1:armhf (1.14-3) ...
Setting up libllvm12:armhf (1:12.0.1-17+rpi1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.71-2) ...
Setting up libxcb-dri2-0:armhf (1.14-3) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libdrm2:armhf (2.4.109-2+rpi1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libhtml-parser-perl:armhf (3.76-1) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libavahi-client3:armhf (0.8-5) ...
Setting up libio-socket-ssl-perl (2.074-2) ...
Setting up python3.9 (3.9.10-1+rpi1) ...
Setting up libhttp-message-perl (6.36-1) ...
Setting up libdrm-amdgpu1:armhf (2.4.109-2+rpi1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libxcb-dri3-0:armhf (1.14-3) ...
Setting up libx11-xcb1:armhf (2:1.7.2-2) ...
Setting up libhttp-negotiate-perl (6.01-1) ...
Setting up libdrm-nouveau2:armhf (2.4.109-2+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libhttp-cookies-perl (6.10-1) ...
Setting up libdrm-radeon1:armhf (2.4.109-2+rpi1) ...
Setting up fontconfig-config (2.13.1-4.4) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-2) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libgl1-mesa-dri:armhf (21.2.6-1+rpi1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up python3 (3.9.7-1+b4) ...
Setting up man-db (2.9.4-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ...
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libxfixes3:armhf (1:6.0.0-1) ...
Setting up libcups2:armhf (2.3.3op2-7+b1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up python3-lib2to3 (3.9.10-1) ...
Setting up python3-distutils (3.9.10-1) ...
Setting up dh-python (5.20220119) ...
Setting up libglx-mesa0:armhf (21.2.6-1+rpi1) ...
Setting up libxi6:armhf (2:1.8-1) ...
Setting up libglx0:armhf (1.4.0-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libxtst6:armhf (2:1.2.3-1) ...
Setting up libmoo-perl (2.005004-3) ...
Setting up python3-all (3.9.7-1+b4) ...
Setting up debhelper (13.6) ...
Setting up libgl1:armhf (1.4.0-1) ...
Setting up ca-certificates-java (20190909) ...
head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Certigna.pem
Adding debian:Certigna_Root_CA.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:EC-ACC.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
Adding debian:GTS_Root_R1.pem
Adding debian:GTS_Root_R2.pem
Adding debian:GTS_Root_R3.pem
Adding debian:GTS_Root_R4.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R6.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Hongkong_Post_Root_CA_3.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Izenpe.com.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
Adding debian:NAVER_Global_Root_Certification_Authority.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:TrustCor_ECA-1.pem
Adding debian:TrustCor_RootCert_CA-1.pem
Adding debian:TrustCor_RootCert_CA-2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:Trustwave_Global_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
Adding debian:UCA_Extended_Validation_Root.pem
Adding debian:UCA_Global_G2_Root.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:certSIGN_Root_CA_G2.pem
Adding debian:e-Szigno_Root_CA_2017.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:emSign_ECC_Root_CA_-_C3.pem
Adding debian:emSign_ECC_Root_CA_-_G3.pem
Adding debian:emSign_Root_CA_-_C1.pem
Adding debian:emSign_Root_CA_-_G1.pem
done.
Setting up liblwp-protocol-https-perl (6.10-1) ...
Setting up default-jre-headless (2:1.11-72+b4) ...
Setting up libwww-perl (6.61-1) ...
Setting up maven-repo-helper (1.10) ...
Setting up devscripts (2.22.1) ...
Setting up javahelper (0.78) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
Setting up openjdk-11-jre-headless:armhf (11.0.13+8-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jre:armhf (11.0.13+8-1) ...
Setting up openjdk-11-jdk-headless:armhf (11.0.13+8-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode
Setting up default-jre (2:1.11-72+b4) ...
Setting up default-jdk-headless (2:1.11-72+b4) ...
Setting up openjdk-11-jdk:armhf (11.0.13+8-1) ...
update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
Setting up default-jdk (2:1.11-72+b4) ...
Setting up sbuild-build-depends-ngs-sdk-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 ca-certificates-java_20190909 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-1 dctrl-tools_2.24-3 debconf_1.5.78 debhelper_13.6 debianutils_4.11.2 default-jdk_2:1.11-72+b4 default-jdk-headless_2:1.11-72+b4 default-jre_2:1.11-72+b4 default-jre-headless_2:1.11-72+b4 devscripts_2.22.1 dh-autoreconf_20 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 java-common_0.72 javahelper_0.78 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libasound2_1.2.6.1-1 libasound2-data_1.2.6.1-1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libclass-method-modifiers-perl_2.13-1 libclass-xsaccessor-perl_1.19-3+b17 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcups2_2.3.3op2-7+b1 libdb5.3_5.3.28+dfsg1-0.8 libdbus-1-3_1.12.20-3 libdebconfclient0_0.260 libdebhelper-perl_13.6 libdevel-callchecker-perl_0.008-1+b2 libdpkg-perl_1.20.9+rpi1 libdrm-amdgpu1_2.4.109-2+rpi1 libdrm-common_2.4.109-2+rpi1 libdrm-nouveau2_2.4.109-2+rpi1 libdrm-radeon1_2.4.109-2+rpi1 libdrm2_2.4.109-2+rpi1 libdynaloader-functions-perl_0.003-1.1 libedit2_3.1-20210910-1 libelf1_0.186-1 libencode-locale-perl_1.05-1.1 libexpat1_2.4.4-1 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-dirlist-perl_0.05-2 libfile-homedir-perl_1.006-1 libfile-listing-perl_6.14-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-touch-perl_0.12-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.4 libfreetype6_2.11.1+dfsg-1 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgif7_5.1.9-2 libgl1_1.4.0-1 libgl1-mesa-dri_21.2.6-1+rpi1 libglapi-mesa_21.2.6-1+rpi1 libglib2.0-0_2.70.3-1 libglvnd0_1.4.0-1 libglx-mesa0_21.2.6-1+rpi1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhtml-parser-perl_3.76-1 libhtml-tagset-perl_3.20-4 libhtml-tree-perl_5.07-2 libhttp-cookies-perl_6.10-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.36-1 libhttp-negotiate-perl_6.01-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimport-into-perl_1.002005-1 libio-html-perl_1.004-2 libio-pty-perl_1:1.15-2 libio-socket-ssl-perl_2.074-2 libipc-run-perl_20200505.0-1 libisl23_0.24-2 libjpeg62-turbo_1:2.1.2-1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 libllvm12_1:12.0.1-17+rpi1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblwp-protocol-https-perl_6.10-1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmodule-runtime-perl_0.016-1 libmoo-perl_2.005004-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnet-http-perl_6.22-1 libnet-ssleay-perl_1.92-1 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.32-3 libnss3_2:3.73.1-1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libparams-classify-perl_0.015-1+b3 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libpcsclite1_1.9.5-1 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpng16-16_1.6.37-3 libpython3-stdlib_3.9.7-1+b4 libpython3.9-minimal_3.9.10-1+rpi1 libpython3.9-stdlib_3.9.10-1+rpi1 libreadline8_8.1-2 librole-tiny-perl_2.002004-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol1_3.1-1 libsigsegv2_2.14-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsub-quote-perl_2.006006-1 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtimedate-perl_2.3300-2 libtinfo5_6.3-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtry-tiny-perl_0.31-1 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.10-1 libuuid1_2.37.2-4 libvulkan1_1.2.198.1-2 libwww-perl_6.61-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libx11-xcb1_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-dri2-0_1.14-3 libxcb-dri3-0_1.14-3 libxcb-glx0_1.14-3 libxcb-present0_1.14-3 libxcb-shm0_1.14-3 libxcb-sync1_1.14-3 libxcb-xfixes0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxfixes3_1:6.0.0-1 libxi6_2:1.8-1 libxml2_2.9.12+dfsg-5 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxtst6_2:1.2.3-1 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.8.0-2+rpi1 libz3-4_4.8.12-1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 markdown_1.0.1-10.1 maven-repo-helper_1.10 mawk_1.3.4.20200120-2 media-types_5.0.0 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openjdk-11-jdk_11.0.13+8-1 openjdk-11-jdk-headless_11.0.13+8-1 openjdk-11-jre_11.0.13+8-1 openjdk-11-jre-headless_11.0.13+8-1 openssl_1.1.1m-1 passwd_1:4.8.1-1 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 perl-openssl-defaults_5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.7-1+b4 python3-all_3.9.7-1+b4 python3-distutils_3.9.10-1 python3-lib2to3_3.9.10-1 python3-minimal_3.9.7-1+b4 python3.9_3.9.10-1+rpi1 python3.9-minimal_3.9.10-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ngs-sdk-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-4 wdiff_1.2.2-2 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.pn6C3GZv/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 3 13:14:50 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ngs-sdk_2.11.2-2.dsc
dpkg-source: info: extracting ngs-sdk in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ngs-sdk_2.11.2.orig.tar.gz
dpkg-source: info: unpacking ngs-sdk_2.11.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_jni.patch
dpkg-source: info: applying do_not_exclude_certain_architectures_explicitly.patch
dpkg-source: info: applying fallback-on-generic-atomic32.patch
dpkg-source: info: applying enable-ppc64el.patch
dpkg-source: info: applying more_archs
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-141cc8e4-1813-4869-8108-b5137d16197b
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ngs-sdk
dpkg-buildpackage: info: source version 2.11.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,javahelper,jh_maven_repo_helper
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -e ngs-sdk/Makefile.config.linux.arm ] ; then \
# dh_auto_clean --sourcedirectory=ngs-sdk ; \
dh_auto_clean ; \
fi
rm -rf ngs-java/arm-linux-gnueabihf
rm -rf ngs-bam/arm-linux-gnueabihf
rm -f ngs-bam/Makefile.config
rm -f ngs-bam/Makefile.config.install.linux.x86_64.prl
rm -f ngs-bam/Makefile.config.linux.x86_64
rm -f ngs-bam/reconfigure
rm -rf ngs-sdk/ngs/unix/generic
rm -rf ngs-sdk/arm-linux-gnueabihf
rm -rf ngs-python/build
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_clean
mh_clean
dh_clean
debian/rules binary-arch
dh binary-arch --with python3,javahelper,jh_maven_repo_helper
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir ngs-sdk/ngs/unix/generic && cp debian/atomic32.h ngs-sdk/ngs/unix/generic/
# # that's no standard configure script lacking support of default options \
./configure --build=arm-linux-gnueabihf --prefix=/usr -- --source=1.7
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... Linux
checking OS distributor...
checking machine architecture... armv7l
configure: warning: possibly unsupported architecture armv7l on 'Linux'
checking for supported architecture... armv7l (32
bits) is supported
checking for supported OS... Linux (linux) is supported
checking for supported tool chain... gcc tool chain is supported
checking for gcc... gcc (Raspbian 10.3.0-11+rpi1) 10.3.0
checking for g++... yes
checking for Python 3... /usr/bin/python3
checking whether gcc accepts -Wno-array-bounds... yes
checking whether g++ accepts -static-libstdc++... no
configure: creating 'ld.linux.exe_cmd.sh'
configure: creating 'Makefile.config.linux.armv7l'
configure: creating 'Makefile.config'
configure: creating 'reconfigure'
build type: release
build prefix: /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk
build output path: /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel
includedir: /usr/include
bindir: /usr/bin
libdir: /usr/lib
sharedir: /usr/share
CC = gcc -c
CPP = g++
configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'"
CONFIGURING ngs-java
Configuring NGS-JAVA package
checking system type... Linux
checking OS distributor...
checking machine architecture... armv7l
configure: warning: possibly unsupported architecture armv7l on 'Linux'
checking for supported architecture... armv7l (32
bits) is supported
checking for supported OS... Linux (linux) is supported
checking for supported tool chain... jdk tool chain is supported
checking for javac... yes
checking for Python 3... /usr/bin/python3
configure: creating 'Makefile.config.linux.armv7l'
configure: creating 'Makefile.config'
configure: creating 'reconfigure'
build type: release
build prefix: /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java
build output path: /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java
includedir: /usr/include
bindir: /usr/bin
libdir: /usr/lib
sharedir: /usr/share
javadir: /usr/jar
configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'"
CONFIGURING ngs-python
Configuring NGS-PYTHON package
checking system type... Linux
checking OS distributor...
checking machine architecture... armv7l
configure: warning: possibly unsupported architecture armv7l on 'Linux'
checking for supported architecture... armv7l (32
bits) is supported
checking for supported OS... Linux (linux) is supported
checking for supported tool chain... gcc tool chain is supported
checking for gcc... gcc (Raspbian 10.3.0-11+rpi1) 10.3.0
checking for g++... yes
checking for Python 3... /usr/bin/python3
checking whether gcc accepts -Wno-array-bounds... yes
checking whether g++ accepts -static-libstdc++... no
checking for ngs-sdk package...
configure: optional ngs-sdk package not found: skipped.
checking for ncbi-vdb package...
configure: optional ncbi-vdb package not found: skipped.
configure: creating 'ld.linux.exe_cmd.sh'
configure: creating 'Makefile.config.linux.armv7l'
configure: creating 'Makefile.config'
configure: creating 'reconfigure'
build type: release
build prefix: /<<PKGBUILDDIR>>/ngs-python/arm-linux-gnueabihf/ngs-python
build output path: /<<PKGBUILDDIR>>/ngs-python/arm-linux-gnueabihf/ngs-python/linux/gcc/armv7l/rel
includedir: /usr/include
bindir: /usr/bin
libdir: /usr/lib
sharedir: /usr/share
pythondir: /usr
CC = gcc -c
CPP = g++
configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'"
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_linkjars -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
#dh_auto_build --sourcedirectory=ngs-sdk
echo "DEBPKGNAME: EBPKGNAME"
DEBPKGNAME: EBPKGNAME
dh_auto_build --sourcedirectory=ngs-sdk
cd ngs-sdk && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/dispatch'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/adapter'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/language'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/language/c++'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/language/java'
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/adapter -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2.11.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadCollectionItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/PileupEventItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReferenceSequenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/AlignmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadGroupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ReadItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/FragmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StatisticsItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/StringItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/Refcount.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrorMsg.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/adapter/ErrBlock.pic.o
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2
ln -s libngs-adapt-c++.a.2.11.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a.2
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a
ln -s libngs-adapt-c++.a.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++.a
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++-static.a
ln -s libngs-adapt-c++.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-adapt-c++-static.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/adapter'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/language/python'
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/c++ -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/dispatch -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadCollection.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceSequence.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReferenceIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Reference.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Pileup.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEventIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/PileupEvent.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/AlignmentIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Alignment.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroupIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadGroup.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/ReadIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Read.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/FragmentIterator.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Fragment.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/Statistics.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/c++/StringRef.pic.o
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/language/c++'
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-disp.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadCollectionItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReferenceSequenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PileupEventItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/AlignmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadGroupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ReadItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/FragmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StatisticsItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/PackageItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/StringItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/Refcount.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/VTable.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ErrBlock.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/dispatch/ErrorMsg.pic.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/dispatch'
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/java -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadCollectionItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_PileupEventItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_AlignmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadGroupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ReadItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_FragmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_StatisticsItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Package.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_String.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_Refcount.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/java/jni_ErrorMsg.pic.o
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/language/java'
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/language/python -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_FragmentIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PackageItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_PileupIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadCollectionItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReadIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StatisticsItf.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_Refcount.pic.o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/language/python/py_StringItf.pic.o
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/language/python'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/language'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk'
rm -rf /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++
rm -rf /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp
( cd /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++; ar x /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a; ar t /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-LShz9q\/ngs-sdk-2.11.2\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-c++\/\1/' > /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++/manifest )
( cd /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp; ar x /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-disp.a; ar t /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-LShz9q\/ngs-sdk-2.11.2\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-disp\/\1/' > /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp/manifest )
rm -rf /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java
rm -rf /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python
( cd /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java; ar x /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a; ar t /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-LShz9q\/ngs-sdk-2.11.2\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-java\/\1/' > /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java/manifest )
( cd /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python; ar x /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a; ar t /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-LShz9q\/ngs-sdk-2.11.2\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/armv7l\/rel\/obj\/ngs-bind-python\/\1/' > /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python/manifest )
( ar rc /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2.11.2 `cat /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-c++/manifest /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-disp/manifest` )
g++ -DNDEBUG -O3 -shared -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2.11.2 -Wl,-soname=libngs-sdk.so.2 `cat /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-java/manifest /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/ngs-bind-python/manifest` -L/<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -lngs-disp
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2
ln -s libngs-c++.a.2.11.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a.2
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a
ln -s libngs-c++.a.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++.a
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++-static.a
ln -s libngs-c++.a /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-c++-static.a
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2
ln -s libngs-sdk.so.2.11.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2
rm -f /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so
ln -s libngs-sdk.so.2 /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk'
# Remove ngs-bam generation, expects ngs-sdk and cannot find a way
# to specify it
#cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=arm-linux-gnueabihf --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk
#dh_auto_build --sourcedirectory=ngs-bam
dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7"
cd ngs-java && make -j4 "JAVAC=javac -source 1.7 -target 1.7"
make[2]: Entering directory '/<<PKGBUILDDIR>>/ngs-java'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-java'
mkdir -p /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar
mkdir -p /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls
javac -source 1.7 -target 1.7 /<<PKGBUILDDIR>>/ngs-java//ngs/ErrorMsg.java /<<PKGBUILDDIR>>/ngs-java//ngs/Statistics.java /<<PKGBUILDDIR>>/ngs-java//ngs/Fragment.java /<<PKGBUILDDIR>>/ngs-java//ngs/FragmentIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/Read.java /<<PKGBUILDDIR>>/ngs-java//ngs/ReadIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/ReadGroup.java /<<PKGBUILDDIR>>/ngs-java//ngs/ReadGroupIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/Alignment.java /<<PKGBUILDDIR>>/ngs-java//ngs/AlignmentIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/PileupEvent.java /<<PKGBUILDDIR>>/ngs-java//ngs/PileupEventIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/Pileup.java /<<PKGBUILDDIR>>/ngs-java//ngs/PileupIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/Reference.java /<<PKGBUILDDIR>>/ngs-java//ngs/ReferenceIterator.java /<<PKGBUILDDIR>>/ngs-java//ngs/ReadCollection.java /<<PKGBUILDDIR>>/ngs-java//ngs/Package.java -d /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /<<PKGBUILDDIR>>/ngs-java/:/<<PKGBUILDDIR>>/ngs-java//itf:/<<PKGBUILDDIR>>/ngs-java/gov/nih/nlm/ncbi/ngs && touch /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-api
( cd /<<PKGBUILDDIR>>/ngs-java/; jar cf /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar `find gov ngs -name "*.java"`; chmod -x,o-w,g+w /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar ) || ( rm -f /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar && false )
Generating javadocs...
javac -source 1.7 -target 1.7 /<<PKGBUILDDIR>>/ngs-java/examples/examples/AlignTest.java /<<PKGBUILDDIR>>/ngs-java/examples/examples/AlignSliceTest.java /<<PKGBUILDDIR>>/ngs-java/examples/examples/FragTest.java /<<PKGBUILDDIR>>/ngs-java/examples/examples/PileupTest.java /<<PKGBUILDDIR>>/ngs-java/examples/examples/RefTest.java /<<PKGBUILDDIR>>/ngs-java/examples/examples/ReadGroupTest.java -d /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /<<PKGBUILDDIR>>/ngs-java/:/<<PKGBUILDDIR>>/ngs-java//itf:/<<PKGBUILDDIR>>/ngs-java/gov/nih/nlm/ncbi/ngs && touch /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-examples
warning: [options] bootstrap class path not set in conjunction with -source 7
warning: [options] bootstrap class path not set in conjunction with -source 7
1 warning
javac -source 1.7 -target 1.7 /<<PKGBUILDDIR>>/ngs-java//ngs/itf/Refcount.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/StatisticsItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/FragmentItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/FragmentIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReadItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReadIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReadGroupItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReadGroupIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/AlignmentItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/AlignmentIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/PileupEventItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/PileupEventIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/PileupItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/PileupIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReferenceItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReferenceIteratorItf.java /<<PKGBUILDDIR>>/ngs-java//ngs/itf/ReadCollectionItf.java -d /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /<<PKGBUILDDIR>>/ngs-java/:/<<PKGBUILDDIR>>/ngs-java//itf:/<<PKGBUILDDIR>>/ngs-java/gov/nih/nlm/ncbi/ngs && touch /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-itf
warning: [options] bootstrap class path not set in conjunction with -source 7
Creating destination directory: "/<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/javadoc/"
Note: /<<PKGBUILDDIR>>/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
javac -source 1.7 -target 1.7 /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/DownloadManager.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/FileCreator.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/HttpManager.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/LibDependencies.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/LibManager.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/LibPathIterator.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/LibVersionChecker.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/LMProperties.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/Logger.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/Manager.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/NGS.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/Version.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java /<<PKGBUILDDIR>>/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -d /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /<<PKGBUILDDIR>>/ngs-java/:/<<PKGBUILDDIR>>/ngs-java//itf:/<<PKGBUILDDIR>>/ngs-java/gov/nih/nlm/ncbi/ngs && touch /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-ncbi
Note: /<<PKGBUILDDIR>>/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
1 warning
( cd /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls; jar cf /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar `find examples -name "*.class"`; chmod -x,o-w,g+w /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar ) || ( rm -f /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar && false )
warning: [options] bootstrap class path not set in conjunction with -source 7
( cd /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/javadoc ; jar cf /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar ) || ( rm -f /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar && false )
1 warning
( cd /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/cls; jar cf /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar `find . -name "*.class"`; chmod -x,o-w,g+w /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar ) || ( rm -f /<<PKGBUILDDIR>>/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar && false )
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-java'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ngs-java'
markdown README.md > README.html
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make -C ngs-sdk/test
make[2]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/test'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/test/test_engine'
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/test/test_engine -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -DNDEBUG -O3 --shared -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libtest_engine.so /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/test_engine/test_engine.pic.o -L/<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib -L/<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/test/test_engine'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ngs-sdk/test/ngs-test'
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/bin
mkdir -p /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test
g++ -c -std=c++11 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/<<PKGBUILDDIR>>/ngs-sdk/test/ngs-test -I/<<PKGBUILDDIR>>/ngs-sdk -I/<<PKGBUILDDIR>>/ngs-sdk/ngs/unix/generic -MD
g++ -DNDEBUG -O3 -o /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/bin/test-ngs /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/obj/test/ngs-test/main.o -L/<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib -L/<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/test/ngs-test'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ngs-sdk/test'
# Tests of Java binding disabled because need external lib ncbi-vdb,
# not available in Debian at this time
#CLASSPATH=../arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples
#CLASSPATH=../arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=../../ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples run_all
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-a \
--exclude-la \
--movedev "ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/*.a*" usr/lib/arm-linux-gnueabihf \
--movedev "ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/ilib/*.a" usr/lib/arm-linux-gnueabihf \
--movedev ngs-sdk/ngs usr/include \
ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/libngs-sdk.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf
mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/armv7l/rel/lib/libngs-sdk.so.2.11.2 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf
PKGDEV=libngs-sdk-dev
PKGSHL=libngs-sdk2
install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/*.a* debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/ilib/*.a debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libngs-sdk-dev/usr/include
mv ngs-sdk/ngs debian/libngs-sdk-dev/usr/include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install -ppython3-ngs
set -e && for i in 3.9; do \
cd ngs-python ; \
python$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs; \
cd .. ; \
done
/usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data'
warnings.warn(msg)
running install
running build
running build_py
creating build
creating build/lib
creating build/lib/ngs
copying ngs/Alignment.py -> build/lib/ngs
copying ngs/AlignmentIterator.py -> build/lib/ngs
copying ngs/ErrorMsg.py -> build/lib/ngs
copying ngs/Fragment.py -> build/lib/ngs
copying ngs/FragmentIterator.py -> build/lib/ngs
copying ngs/LibChecker.py -> build/lib/ngs
copying ngs/LibManager.py -> build/lib/ngs
copying ngs/Package.py -> build/lib/ngs
copying ngs/Pileup.py -> build/lib/ngs
copying ngs/PileupEvent.py -> build/lib/ngs
copying ngs/PileupEventIterator.py -> build/lib/ngs
copying ngs/PileupIterator.py -> build/lib/ngs
copying ngs/Read.py -> build/lib/ngs
copying ngs/ReadCollection.py -> build/lib/ngs
copying ngs/ReadGroup.py -> build/lib/ngs
copying ngs/ReadGroupIterator.py -> build/lib/ngs
copying ngs/ReadIterator.py -> build/lib/ngs
copying ngs/Refcount.py -> build/lib/ngs
copying ngs/Reference.py -> build/lib/ngs
copying ngs/ReferenceIterator.py -> build/lib/ngs
copying ngs/ReferenceSequence.py -> build/lib/ngs
copying ngs/Statistics.py -> build/lib/ngs
copying ngs/String.py -> build/lib/ngs
copying ngs/__init__.py -> build/lib/ngs
running install_lib
creating ../debian/python3-ngs
creating ../debian/python3-ngs/usr
creating ../debian/python3-ngs/usr/lib
creating ../debian/python3-ngs/usr/lib/python3
creating ../debian/python3-ngs/usr/lib/python3/dist-packages
creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc
byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc
running install_egg_info
Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info
find debian -name "*.pyc" -delete
find debian -type d -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_installjavadoc -a
dh_installdocs -a
dh_installchangelogs -a
dh_python3 -a
dh_perl -a
dh_link -a
jh_installlibs -a
jh_classpath -a
jh_manifest -a
jh_depends -a
mh_installpoms -a
mh_linkjars --skip-clean-poms -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dwz: debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2.11.2: .debug_info section not present
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2.11.2 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.11.2-2_armhf.deb'.
dpkg-deb: building package 'libngs-sdk-dev' in '../libngs-sdk-dev_2.11.2-2_armhf.deb'.
dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.11.2-2_armhf.deb'.
dpkg-deb: building package 'libngs-sdk2-dbgsym' in '../libngs-sdk2-dbgsym_2.11.2-2_armhf.deb'.
dpkg-deb: building package 'libngs-java' in '../libngs-java_2.11.2-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../ngs-sdk_2.11.2-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-08T06:46:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ngs-sdk_2.11.2-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 03 Feb 2022 14:11:43 +0100
Source: ngs-sdk
Binary: libngs-java libngs-sdk-dev libngs-sdk2 libngs-sdk2-dbgsym python3-ngs
Architecture: armhf
Version: 2.11.2-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libngs-java - Next Generation Sequencing language Bindings (Java bindings)
libngs-sdk-dev - Next Generation Sequencing language Bindings (development)
libngs-sdk2 - Next Generation Sequencing language Bindings
python3-ngs - Next Generation Sequencing language Bindings (Python3 bindings)
Changes:
ngs-sdk (2.11.2-2) unstable; urgency=medium
.
* Really fix watch file
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Files:
05c517e93ae6797dcf0796000ebc85bf 80680 java optional libngs-java_2.11.2-2_armhf.deb
aa3045cc4f18e5d98d7be6208d8c4cbd 91320 libdevel optional libngs-sdk-dev_2.11.2-2_armhf.deb
647163b2cd6f9998bc1582e93bdff908 10660 debug optional libngs-sdk2-dbgsym_2.11.2-2_armhf.deb
4a5639a23f84ec6a66d89007cbe41174 45480 libs optional libngs-sdk2_2.11.2-2_armhf.deb
a05e6f197885154dd8e9af3046c7c837 10958 science optional ngs-sdk_2.11.2-2_armhf.buildinfo
d5bcf088b68f7bc8f2136ab077f9a893 20204 python optional python3-ngs_2.11.2-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libngs-java_2.11.2-2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 80680 bytes: control archive=1100 bytes.
1034 bytes, 25 lines control
506 bytes, 6 lines md5sums
Package: libngs-java
Source: ngs-sdk
Version: 2.11.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 110
Depends: libngs-sdk-dev (= 2.11.2-2)
Section: java
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ncbi/ngs
Description: Next Generation Sequencing language Bindings (Java bindings)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
.
Java bindings.
drwxr-xr-x root/root 0 2022-02-03 13:11 ./
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/libngs-java/
-rw-r--r-- root/root 1952 2022-02-03 13:11 ./usr/share/doc/libngs-java/changelog.Debian.gz
-rw-r--r-- root/root 2366 2021-10-07 19:54 ./usr/share/doc/libngs-java/changelog.gz
-rw-r--r-- root/root 3377 2022-02-03 13:11 ./usr/share/doc/libngs-java/copyright
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/java/
-rw-r--r-- root/root 82180 2022-02-03 13:11 ./usr/share/java/ngs-java-2.11.2.jar
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/share/java/ngs-java.jar -> ngs-java-2.11.2.jar
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/ngs-java-1.2.4.jar -> ../../../../../../../java/ngs-java.jar
-rw-r--r-- root/root 683 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/1.2.4/ngs-java-1.2.4.pom
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ngs-java-debian.jar -> ../../../../../../../java/ngs-java.jar
-rw-r--r-- root/root 684 2022-02-03 13:11 ./usr/share/maven-repo/gov/nih/nlm/ncbi/ngs-java/debian/ngs-java-debian.pom
libngs-sdk-dev_2.11.2-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 91320 bytes: control archive=3372 bytes.
1055 bytes, 25 lines control
7065 bytes, 100 lines md5sums
Package: libngs-sdk-dev
Source: ngs-sdk
Version: 2.11.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1171
Depends: libngs-sdk2 (= 2.11.2-2)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ncbi/ngs
Description: Next Generation Sequencing language Bindings (development)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
.
This is the development package.
drwxr-xr-x root/root 0 2022-02-03 13:11 ./
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/include/
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/
-rw-r--r-- root/root 9154 2021-10-07 19:54 ./usr/include/ngs/Alignment.hpp
-rw-r--r-- root/root 2746 2021-10-07 19:54 ./usr/include/ngs/AlignmentIterator.hpp
-rw-r--r-- root/root 1398 2021-10-07 19:54 ./usr/include/ngs/ErrorMsg.hpp
-rw-r--r-- root/root 3945 2021-10-07 19:54 ./usr/include/ngs/Fragment.hpp
-rw-r--r-- root/root 2645 2021-10-07 19:54 ./usr/include/ngs/FragmentIterator.hpp
-rw-r--r-- root/root 2149 2021-10-07 19:54 ./usr/include/ngs/Package.hpp
-rw-r--r-- root/root 3181 2021-10-07 19:54 ./usr/include/ngs/Pileup.hpp
-rw-r--r-- root/root 8631 2021-10-07 19:54 ./usr/include/ngs/PileupEvent.hpp
-rw-r--r-- root/root 3028 2021-10-07 19:54 ./usr/include/ngs/PileupEventIterator.hpp
-rw-r--r-- root/root 2697 2021-10-07 19:54 ./usr/include/ngs/PileupIterator.hpp
-rw-r--r-- root/root 4363 2021-10-07 19:54 ./usr/include/ngs/Read.hpp
-rw-r--r-- root/root 7394 2021-10-07 19:54 ./usr/include/ngs/ReadCollection.hpp
-rw-r--r-- root/root 2742 2021-10-07 19:54 ./usr/include/ngs/ReadGroup.hpp
-rw-r--r-- root/root 2751 2021-10-07 19:54 ./usr/include/ngs/ReadGroupIterator.hpp
-rw-r--r-- root/root 2606 2021-10-07 19:54 ./usr/include/ngs/ReadIterator.hpp
-rw-r--r-- root/root 8877 2021-10-07 19:54 ./usr/include/ngs/Reference.hpp
-rw-r--r-- root/root 2735 2021-10-07 19:54 ./usr/include/ngs/ReferenceIterator.hpp
-rw-r--r-- root/root 3896 2021-10-07 19:54 ./usr/include/ngs/ReferenceSequence.hpp
-rw-r--r-- root/root 3743 2021-10-07 19:54 ./usr/include/ngs/Statistics.hpp
-rw-r--r-- root/root 3624 2021-10-07 19:54 ./usr/include/ngs/StringRef.hpp
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/adapter/
-rw-r--r-- root/root 6854 2021-10-07 19:54 ./usr/include/ngs/adapter/AlignmentItf.hpp
-rw-r--r-- root/root 2743 2021-10-07 19:54 ./usr/include/ngs/adapter/ErrorMsg.hpp
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-rw-r--r-- root/root 4228 2021-10-07 19:54 ./usr/include/ngs/adapter/PileupEventItf.hpp
-rw-r--r-- root/root 3325 2021-10-07 19:54 ./usr/include/ngs/adapter/PileupItf.hpp
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-rw-r--r-- root/root 2452 2021-10-07 19:54 ./usr/include/ngs/adapter/ReadGroupItf.hpp
-rw-r--r-- root/root 3833 2021-10-07 19:54 ./usr/include/ngs/adapter/ReadItf.hpp
-rw-r--r-- root/root 3943 2021-10-07 19:54 ./usr/include/ngs/adapter/Refcount.hpp
-rw-r--r-- root/root 5973 2021-10-07 19:54 ./usr/include/ngs/adapter/ReferenceItf.hpp
-rw-r--r-- root/root 3044 2021-10-07 19:54 ./usr/include/ngs/adapter/ReferenceSequenceItf.hpp
-rw-r--r-- root/root 3100 2021-10-07 19:54 ./usr/include/ngs/adapter/StatisticsItf.hpp
-rw-r--r-- root/root 2814 2021-10-07 19:54 ./usr/include/ngs/adapter/StringItf.hpp
-rw-r--r-- root/root 1829 2021-10-07 19:54 ./usr/include/ngs/adapter/defs.h
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/inl/
-rw-r--r-- root/root 5619 2021-10-07 19:54 ./usr/include/ngs/inl/Alignment.hpp
-rw-r--r-- root/root 1977 2021-10-07 19:54 ./usr/include/ngs/inl/AlignmentIterator.hpp
-rw-r--r-- root/root 3090 2021-10-07 19:54 ./usr/include/ngs/inl/Fragment.hpp
-rw-r--r-- root/root 1785 2021-10-07 19:54 ./usr/include/ngs/inl/FragmentIterator.hpp
-rw-r--r-- root/root 1732 2021-10-07 19:54 ./usr/include/ngs/inl/Package.hpp
-rw-r--r-- root/root 2327 2021-10-07 19:54 ./usr/include/ngs/inl/Pileup.hpp
-rw-r--r-- root/root 3535 2021-10-07 19:54 ./usr/include/ngs/inl/PileupEvent.hpp
-rw-r--r-- root/root 1961 2021-10-07 19:54 ./usr/include/ngs/inl/PileupEventIterator.hpp
-rw-r--r-- root/root 1923 2021-10-07 19:54 ./usr/include/ngs/inl/PileupIterator.hpp
-rw-r--r-- root/root 3701 2021-10-07 19:54 ./usr/include/ngs/inl/Read.hpp
-rw-r--r-- root/root 5495 2021-10-07 19:54 ./usr/include/ngs/inl/ReadCollection.hpp
-rw-r--r-- root/root 1910 2021-10-07 19:54 ./usr/include/ngs/inl/ReadGroup.hpp
-rw-r--r-- root/root 1787 2021-10-07 19:54 ./usr/include/ngs/inl/ReadGroupIterator.hpp
-rw-r--r-- root/root 1825 2021-10-07 19:54 ./usr/include/ngs/inl/ReadIterator.hpp
-rw-r--r-- root/root 6401 2021-10-07 19:54 ./usr/include/ngs/inl/Reference.hpp
-rw-r--r-- root/root 1795 2021-10-07 19:54 ./usr/include/ngs/inl/ReferenceIterator.hpp
-rw-r--r-- root/root 2950 2021-10-07 19:54 ./usr/include/ngs/inl/ReferenceSequence.hpp
-rw-r--r-- root/root 2690 2021-10-07 19:54 ./usr/include/ngs/inl/Statistics.hpp
-rw-r--r-- root/root 2179 2021-10-07 19:54 ./usr/include/ngs/inl/StringRef.hpp
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/itf/
-rw-r--r-- root/root 4369 2021-10-07 19:54 ./usr/include/ngs/itf/AlignmentItf.h
-rw-r--r-- root/root 3915 2021-10-07 19:54 ./usr/include/ngs/itf/AlignmentItf.hpp
-rw-r--r-- root/root 1735 2021-10-07 19:54 ./usr/include/ngs/itf/ErrBlock.h
-rw-r--r-- root/root 2052 2021-10-07 19:54 ./usr/include/ngs/itf/ErrBlock.hpp
-rw-r--r-- root/root 2703 2021-10-07 19:54 ./usr/include/ngs/itf/ErrorMsg.hpp
-rw-r--r-- root/root 2404 2021-10-07 19:54 ./usr/include/ngs/itf/FragmentItf.h
-rw-r--r-- root/root 2702 2021-10-07 19:54 ./usr/include/ngs/itf/FragmentItf.hpp
-rw-r--r-- root/root 1806 2021-10-07 19:54 ./usr/include/ngs/itf/PackageItf.hpp
-rw-r--r-- root/root 3234 2021-10-07 19:54 ./usr/include/ngs/itf/PileupEventItf.h
-rw-r--r-- root/root 2959 2021-10-07 19:54 ./usr/include/ngs/itf/PileupEventItf.hpp
-rw-r--r-- root/root 2387 2021-10-07 19:54 ./usr/include/ngs/itf/PileupItf.h
-rw-r--r-- root/root 2175 2021-10-07 19:54 ./usr/include/ngs/itf/PileupItf.hpp
-rw-r--r-- root/root 4159 2021-10-07 19:54 ./usr/include/ngs/itf/ReadCollectionItf.h
-rw-r--r-- root/root 3531 2021-10-07 19:54 ./usr/include/ngs/itf/ReadCollectionItf.hpp
-rw-r--r-- root/root 2190 2021-10-07 19:54 ./usr/include/ngs/itf/ReadGroupItf.h
-rw-r--r-- root/root 2292 2021-10-07 19:54 ./usr/include/ngs/itf/ReadGroupItf.hpp
-rw-r--r-- root/root 2634 2021-10-07 19:54 ./usr/include/ngs/itf/ReadItf.h
-rw-r--r-- root/root 2910 2021-10-07 19:54 ./usr/include/ngs/itf/ReadItf.hpp
-rw-r--r-- root/root 1930 2021-10-07 19:54 ./usr/include/ngs/itf/Refcount.h
-rw-r--r-- root/root 3440 2021-10-07 19:54 ./usr/include/ngs/itf/Refcount.hpp
-rw-r--r-- root/root 4991 2021-10-07 19:54 ./usr/include/ngs/itf/ReferenceItf.h
-rw-r--r-- root/root 4259 2021-10-07 19:54 ./usr/include/ngs/itf/ReferenceItf.hpp
-rw-r--r-- root/root 2584 2021-10-07 19:54 ./usr/include/ngs/itf/ReferenceSequenceItf.h
-rw-r--r-- root/root 2549 2021-10-07 19:54 ./usr/include/ngs/itf/ReferenceSequenceItf.hpp
-rw-r--r-- root/root 2458 2021-10-07 19:54 ./usr/include/ngs/itf/StatisticsItf.h
-rw-r--r-- root/root 2372 2021-10-07 19:54 ./usr/include/ngs/itf/StatisticsItf.hpp
-rw-r--r-- root/root 2012 2021-10-07 19:54 ./usr/include/ngs/itf/StringItf.h
-rw-r--r-- root/root 2047 2021-10-07 19:54 ./usr/include/ngs/itf/StringItf.hpp
-rw-r--r-- root/root 2614 2021-10-07 19:54 ./usr/include/ngs/itf/VTable.h
-rw-r--r-- root/root 3595 2021-10-07 19:54 ./usr/include/ngs/itf/VTable.hpp
-rw-r--r-- root/root 2387 2021-10-07 19:54 ./usr/include/ngs/itf/defs.h
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/include/ngs/unix/
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/unix/arm64/
-rw-r--r-- root/root 2779 2021-10-07 19:54 ./usr/include/ngs/unix/arm64/atomic32.h
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/unix/fat86/
-rw-r--r-- root/root 1457 2021-10-07 19:54 ./usr/include/ngs/unix/fat86/atomic32.h
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/include/ngs/unix/generic/
-rw-r--r-- root/root 2603 2022-02-03 13:11 ./usr/include/ngs/unix/generic/atomic32.h
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/unix/i386/
-rw-r--r-- root/root 8379 2021-10-07 19:54 ./usr/include/ngs/unix/i386/atomic32.h
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/unix/x86_64/
-rw-r--r-- root/root 8378 2021-10-07 19:54 ./usr/include/ngs/unix/x86_64/atomic32.h
drwxr-xr-x root/root 0 2021-10-07 19:54 ./usr/include/ngs/win/
-rw-r--r-- root/root 2623 2021-10-07 19:54 ./usr/include/ngs/win/atomic32.h
-rw-r--r-- root/root 1508 2021-10-07 19:54 ./usr/include/ngs/win/stdbool.h
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-adapt-c++-static.a -> libngs-adapt-c++.a
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-adapt-c++.a -> libngs-adapt-c++.a.2
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-adapt-c++.a.2 -> libngs-adapt-c++.a.2.11.2
-rw-r--r-- root/root 109716 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-adapt-c++.a.2.11.2
-rw-r--r-- root/root 52364 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-bind-c++.a
-rw-r--r-- root/root 156376 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-bind-java.a
-rw-r--r-- root/root 140780 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-bind-python.a
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-c++-static.a -> libngs-c++.a
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-c++.a -> libngs-c++.a.2
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-c++.a.2 -> libngs-c++.a.2.11.2
-rw-r--r-- root/root 206774 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-c++.a.2.11.2
-rw-r--r-- root/root 145840 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-disp.a
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-sdk.so -> libngs-sdk.so.2
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/libngs-sdk-dev/
-rw-r--r-- root/root 1952 2022-02-03 13:11 ./usr/share/doc/libngs-sdk-dev/changelog.Debian.gz
-rw-r--r-- root/root 2366 2021-10-07 19:54 ./usr/share/doc/libngs-sdk-dev/changelog.gz
-rw-r--r-- root/root 3377 2022-02-03 13:11 ./usr/share/doc/libngs-sdk-dev/copyright
libngs-sdk2-dbgsym_2.11.2-2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 10660 bytes: control archive=552 bytes.
400 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libngs-sdk2-dbgsym
Source: ngs-sdk
Version: 2.11.2-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 58
Depends: libngs-sdk2 (= 2.11.2-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libngs-sdk2
Build-Ids: 92815bbbd0de3e652b351f39e96e194e3410ddf1
drwxr-xr-x root/root 0 2022-02-03 13:11 ./
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root 48156 2022-02-03 13:11 ./usr/lib/debug/.build-id/92/815bbbd0de3e652b351f39e96e194e3410ddf1.debug
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/share/doc/libngs-sdk2-dbgsym -> libngs-sdk2
libngs-sdk2_2.11.2-2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 45480 bytes: control archive=1176 bytes.
1027 bytes, 23 lines control
378 bytes, 5 lines md5sums
37 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libngs-sdk2
Source: ngs-sdk
Version: 2.11.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 241
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/ncbi/ngs
Description: Next Generation Sequencing language Bindings
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
drwxr-xr-x root/root 0 2022-02-03 13:11 ./
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2 -> libngs-sdk.so.2.11.2
-rw-r--r-- root/root 223340 2022-02-03 13:11 ./usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2.11.2
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/libngs-sdk2/
-rw-r--r-- root/root 1072 2022-02-03 13:11 ./usr/share/doc/libngs-sdk2/README.html
-rw-r--r-- root/root 1952 2022-02-03 13:11 ./usr/share/doc/libngs-sdk2/changelog.Debian.gz
-rw-r--r-- root/root 2366 2021-10-07 19:54 ./usr/share/doc/libngs-sdk2/changelog.gz
-rw-r--r-- root/root 3377 2022-02-03 13:11 ./usr/share/doc/libngs-sdk2/copyright
python3-ngs_2.11.2-2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 20204 bytes: control archive=1980 bytes.
1038 bytes, 24 lines control
2298 bytes, 28 lines md5sums
259 bytes, 12 lines * postinst #!/bin/sh
408 bytes, 12 lines * prerm #!/bin/sh
Package: python3-ngs
Source: ngs-sdk
Version: 2.11.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 139
Depends: python3:any, libngs-sdk-dev (= 2.11.2-2)
Section: python
Priority: optional
Homepage: https://github.com/ncbi/ngs
Description: Next Generation Sequencing language Bindings (Python3 bindings)
NGS is a new, domain-specific API for accessing reads, alignments and
pileups produced from Next Generation Sequencing. The API itself is
independent from any particular back-end implementation, and supports
use of multiple back-ends simultaneously. It also provides a library for
building new back-end "engines". The engine for accessing SRA data is
contained within the sister repository ncbi-vdb.
.
The API is currently expressed in C++, Java and Python languages. The
design makes it possible to maintain a high degree of similarity between
the code in one language and code in another - especially between C++
and Java.
.
Python3 bindings.
drwxr-xr-x root/root 0 2022-02-03 13:11 ./
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root 196 2022-02-03 13:11 ./usr/lib/python3/dist-packages/ngs-1.0.egg-info
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/lib/python3/dist-packages/ngs/
-rw-r--r-- root/root 7924 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Alignment.py
-rw-r--r-- root/root 1787 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/AlignmentIterator.py
-rw-r--r-- root/root 2271 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ErrorMsg.py
-rw-r--r-- root/root 3089 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Fragment.py
-rw-r--r-- root/root 1705 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/FragmentIterator.py
-rw-r--r-- root/root 2995 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/LibChecker.py
-rw-r--r-- root/root 22852 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/LibManager.py
-rw-r--r-- root/root 1906 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Package.py
-rw-r--r-- root/root 2437 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Pileup.py
-rw-r--r-- root/root 5949 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/PileupEvent.py
-rw-r--r-- root/root 2266 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/PileupEventIterator.py
-rw-r--r-- root/root 1783 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/PileupIterator.py
-rw-r--r-- root/root 4235 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Read.py
-rw-r--r-- root/root 10709 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReadCollection.py
-rw-r--r-- root/root 1922 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReadGroup.py
-rw-r--r-- root/root 1826 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py
-rw-r--r-- root/root 1784 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReadIterator.py
-rw-r--r-- root/root 1942 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Refcount.py
-rw-r--r-- root/root 8964 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Reference.py
-rw-r--r-- root/root 1778 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReferenceIterator.py
-rw-r--r-- root/root 4230 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/ReferenceSequence.py
-rw-r--r-- root/root 4653 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/Statistics.py
-rw-r--r-- root/root 5731 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/String.py
-rw-r--r-- root/root 4143 2021-10-07 19:54 ./usr/lib/python3/dist-packages/ngs/__init__.py
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-03 13:11 ./usr/share/doc/python3-ngs/
-rw-r--r-- root/root 1952 2022-02-03 13:11 ./usr/share/doc/python3-ngs/changelog.Debian.gz
-rw-r--r-- root/root 2366 2021-10-07 19:54 ./usr/share/doc/python3-ngs/changelog.gz
-rw-r--r-- root/root 3377 2022-02-03 13:11 ./usr/share/doc/python3-ngs/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 16456
Build-Time: 308
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 977
Job: ngs-sdk_2.11.2-2
Machine Architecture: armhf
Package: ngs-sdk
Package-Time: 1342
Source-Version: 2.11.2-2
Space: 16456
Status: successful
Version: 2.11.2-2
--------------------------------------------------------------------------------
Finished at 2022-02-08T06:46:38Z
Build needed 00:22:22, 16456k disc space