ncbi-tools6 →
6.1.20120620-7 →
armhf → 2013-10-13 04:40:53
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ ncbi-tools6 6.1.20120620-7 (armhf) 13 Oct 2013 02:37 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: ncbi-tools6
Version: 6.1.20120620-7
Source Version: 6.1.20120620-7
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-t2T5gL/ncbi-tools6-6.1.20120620' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-t2T5gL' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-0bee2289-264d-4692-8042-404296188526' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [6935 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8048 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.0 MB in 2min 46s (90.0 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/ncbi-tools6.git
Need to get 68.6 MB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-7 (dsc) [2637 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-7 (tar) [68.4 MB]
Get:3 http://172.17.0.1/private/ jessie-staging/main ncbi-tools6 6.1.20120620-7 (diff) [139 kB]
Fetched 68.6 MB in 3min 27s (331 kB/s)
Download complete and in download only mode
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-GGmY2F/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 24 not upgraded.
Need to get 0 B/704 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12118 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh | c-shell, debhelper (>= 9), libglu1-mesa-dev | libglu-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), csh, debhelper (>= 9), libglu1-mesa-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
dpkg-deb: building package `sbuild-build-depends-ncbi-tools6-dummy' in `/«BUILDDIR»/resolver-n64NrR/apt_archive/sbuild-build-depends-ncbi-tools6-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install ncbi-tools6 build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils csh debhelper file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libasprintf0c2 libbsd0 libcroco3
libdrm-dev libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm2 libexpat1
libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dev libgl1-mesa-glx
libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6
libjpeg8 libmagic1 libmotif-common libmotif-dev libmrm4 libpcre3-dev
libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev libpthread-stubs0-dev
libsm-dev libsm6 libuil4 libunistring0 libx11-6 libx11-data libx11-dev
libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri2-0-dev libxcb-glx0 libxcb-glx0-dev libxcb1 libxcb1-dev
libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes-dev libxfixes3 libxft2 libxm4 libxml2 libxmu-dev libxmu-headers
libxmu6 libxrender1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 man-db
mesa-common-dev po-debconf ttf-dejavu-core ucf uil x11-common
x11proto-core-dev x11proto-damage-dev x11proto-dri2-dev x11proto-fixes-dev
x11proto-gl-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev
x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff libice-doc
libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libgl1-mesa-dri libglib2.0-data shared-mime-info libx11-doc xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils csh debhelper file fontconfig-config fonts-dejavu-core gettext
gettext-base groff-base intltool-debian libasprintf0c2 libbsd0 libcroco3
libdrm-dev libdrm-nouveau2 libdrm-omap1 libdrm-radeon1 libdrm2 libexpat1
libffi6 libfontconfig1 libfreetype6 libgl1-mesa-dev libgl1-mesa-glx
libglapi-mesa libglib2.0-0 libglu1-mesa libglu1-mesa-dev libice-dev libice6
libjpeg8 libmagic1 libmotif-common libmotif-dev libmrm4 libpcre3-dev
libpcrecpp0 libpipeline1 libpng12-0 libpng12-dev libpthread-stubs0-dev
libsm-dev libsm6 libuil4 libunistring0 libx11-6 libx11-data libx11-dev
libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0
libxcb-dri2-0-dev libxcb-glx0 libxcb-glx0-dev libxcb1 libxcb1-dev
libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes-dev libxfixes3 libxft2 libxm4 libxml2 libxmu-dev libxmu-headers
libxmu6 libxrender1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 man-db
mesa-common-dev po-debconf sbuild-build-depends-ncbi-tools6-dummy
ttf-dejavu-core ucf uil x11-common x11proto-core-dev x11proto-damage-dev
x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-input-dev
x11proto-kb-dev x11proto-xext-dev x11proto-xf86vidmode-dev
xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 97 newly installed, 0 to remove and 24 not upgraded.
Need to get 25.7 MB/25.7 MB of archives.
After this operation, 61.7 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.4-1 [36.9 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-3 [666 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-2 [949 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-1 [29.4 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libbsd0 armhf 0.6.0-1 [66.6 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.46-3 [466 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libdrm-nouveau2 armhf 2.4.46-3 [460 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libdrm-omap1 armhf 2.4.46-3 [451 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libdrm-radeon1 armhf 2.4.46-3 [468 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.10.2-2 [251 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.10.2-2 [306 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 9.1.6-2 [61.6 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.9.1-3 [43.3 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.1-1 [125 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.1-1 [861 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.1-1 [157 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.9.1-3 [12.1 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.9.1-3 [27.6 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 9.1.6-2 [127 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libglu1-mesa armhf 9.0.0-2 [166 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+4 [282 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libmotif-common all 2.3.4-4 [29.2 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libxmu6 armhf 2:1.1.1-1 [59.1 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libxm4 armhf 2.3.4-4 [1060 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libmrm4 armhf 2.3.4-4 [83.0 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libuil4 armhf 2.3.4-4 [169 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-1 [136 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main csh armhf 20110502-2 [236 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-1 [1837 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20130921 [688 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libdrm-dev armhf 2.4.46-3 [577 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main x11proto-core-dev all 7.0.24-1 [779 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main libxau-dev armhf 1:1.0.8-1 [23.0 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main libxdmcp-dev armhf 1:1.1.1-1 [40.8 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main x11proto-input-dev all 2.3-1 [177 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main x11proto-kb-dev all 1.0.6-2 [269 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main xtrans-dev all 1.2.7-1 [112 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main libpthread-stubs0-dev armhf 0.3-4 [4042 B]
Get:69 http://172.17.0.1/private/ jessie-staging/main libxcb1-dev armhf 1.9.1-3 [98.5 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libx11-dev armhf 2:1.6.1-1 [982 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main mesa-common-dev armhf 9.1.6-2 [300 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libx11-xcb-dev armhf 2:1.6.1-1 [159 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0-dev armhf 1.9.1-3 [15.5 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0-dev armhf 1.9.1-3 [45.9 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main x11proto-xext-dev all 7.2.1-1 [273 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main x11proto-fixes-dev all 1:5.0-2 [19.2 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libxfixes-dev armhf 1:5.0.1-1 [24.1 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main x11proto-damage-dev all 1:1.2.1-2 [11.8 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libxdamage-dev armhf 1:1.1.4-1 [14.3 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libxext-dev armhf 2:1.3.2-1 [110 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main x11proto-xf86vidmode-dev all 2.3.1-2 [6114 B]
Get:82 http://172.17.0.1/private/ jessie-staging/main libxxf86vm-dev armhf 1:1.1.3-1 [25.5 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main x11proto-dri2-dev all 2.8-2 [18.2 kB]
Get:84 http://172.17.0.1/private/ jessie-staging/main x11proto-gl-dev all 1.4.16-2 [32.1 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-dev armhf 9.1.6-2 [34.7 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main libglu1-mesa-dev armhf 9.0.0-2 [238 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main libice-dev armhf 2:1.0.8-2 [65.9 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main uil armhf 2.3.4-4 [26.7 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main libmotif-dev armhf 2.3.4-4 [2766 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:91 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-4 [260 kB]
Get:93 http://172.17.0.1/private/ jessie-staging/main libsm-dev armhf 2:1.2.1-2 [35.6 kB]
Get:94 http://172.17.0.1/private/ jessie-staging/main libxt-dev armhf 1:1.1.4-1 [447 kB]
Get:95 http://172.17.0.1/private/ jessie-staging/main libxmu-headers all 2:1.1.1-1 [77.8 kB]
Get:96 http://172.17.0.1/private/ jessie-staging/main libxmu-dev armhf 2:1.1.1-1 [64.7 kB]
debconf: delaying package configuration, since apt-utils is not installed
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.23.52.20130828-1 dpkg-dev_1.16.10 g++-4.6_4.6.4-4+rpi1 g++-4.8_4.8.1-6+rpi1 gcc-4.6_4.6.4-4+rpi1 gcc-4.8_4.8.1-6+rpi1 libc6-dev_2.17-92+rpi1 libstdc++-4.8-dev_4.8.1-6+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-4+rpi1 linux-libc-dev_3.10.1-1+rpi1+b2
Package versions: apt_0.9.11.4+rpi1 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.23.52.20130828-1 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.1-3 cpp-4.6_4.6.4-4+rpi1 cpp-4.8_4.8.1-6+rpi1 csh_20110502-2 dash_0.5.7-3 debconf_1.5.51 debfoster_2.7-1.2 debhelper_9.20130921 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-6 fontconfig-config_2.10.2-2 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.8.1-3 g++-4.6_4.6.4-4+rpi1 g++-4.8_4.8.1-6+rpi1 gcc_4:4.8.1-3 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-4+rpi1 gcc-4.6-base_4.6.4-4+rpi1 gcc-4.7-base_4.7.3-4+rpi1 gcc-4.8_4.8.1-6+rpi1 gcc-4.8-base_4.8.1-6+rpi1 gettext_0.18.3.1-1 gettext-base_0.18.3.1-1 gnupg_1.4.14-1 gpgv_1.4.14-1 grep_2.14-3 groff-base_1.22.2-3 gzip_1.6-2 hostname_3.14 initramfs-tools_0.113 initscripts_2.88dsf-43 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.52-1 libapt-pkg4.12_0.9.11.4+rpi1 libarchive-extract-perl_0.68-1 libasan0_4.8.1-6+rpi1 libasprintf0c2_0.18.3.1-1 libatomic1_4.8.1-6+rpi1 libattr1_1:2.4.47-1 libblkid1_2.20.1-5.5 libbsd0_0.6.0-1 libbz2-1.0_1.0.6-5 libc-bin_2.17-92+rpi1 libc-dev-bin_2.17-92+rpi1 libc6_2.17-92+rpi1 libc6-dev_2.17-92+rpi1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.0-2 libcomerr2_1.42.8-1 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdbus-1-3_1.6.14-1 libdpkg-perl_1.16.10 libdrm-dev_2.4.46-3 libdrm-nouveau2_2.4.46-3 libdrm-omap1_2.4.46-3 libdrm-radeon1_2.4.46-3 libdrm2_2.4.46-3 libexpat1_2.1.0-4 libffi6_3.0.13-4 libfontconfig1_2.10.2-2 libfreetype6_2.4.9-1.1 libgc1c2_1:7.2d-5 libgcc-4.8-dev_4.8.1-6+rpi1 libgcc1_1:4.8.1-6+rpi1 libgdbm3_1.8.3-12 libgl1-mesa-dev_9.1.6-2 libgl1-mesa-glx_9.1.6-2 libglapi-mesa_9.1.6-2 libglib2.0-0_2.36.4-1 libglu1-mesa_9.0.0-2 libglu1-mesa-dev_9.0.0-2 libgmp10_2:5.1.2+dfsg-3 libgomp1_4.8.1-6+rpi1 libice-dev_2:1.0.8-2 libice6_2:1.0.8-2 libisl10_0.11.2-1 libjpeg8_8d-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_4.8-1 libmotif-common_2.3.4-4 libmotif-dev_2.3.4-4 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.1-2 libmrm4_2.3.4-4 libncurses5_5.9+20130608-1 libncursesw5_5.9+20130608-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.4-1 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libpthread-stubs0-dev_0.3-4 libreadline6_6.2+dfsg-0.1 libselinux1_2.1.13-2 libsemanage-common_2.1.10-2 libsemanage1_2.1.10-2 libsepol1_2.1.9-2 libslang2_2.2.4-15 libsm-dev_2:1.2.1-2 libsm6_2:1.2.1-2 libss2_1.42.8-1 libstdc++-4.8-dev_4.8.1-6+rpi1 libstdc++6_4.8.1-6+rpi1 libstdc++6-4.6-dev_4.6.4-4+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.36-1 libtimedate-perl_1.2000-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libudev1_204-5 libuil4_2.3.4-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.2 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libx11-6_2:1.6.1-1 libx11-data_2:1.6.1-1 libx11-dev_2:1.6.1-1 libx11-xcb-dev_2:1.6.1-1 libx11-xcb1_2:1.6.1-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.9.1-3 libxcb-dri2-0-dev_1.9.1-3 libxcb-glx0_1.9.1-3 libxcb-glx0-dev_1.9.1-3 libxcb1_1.9.1-3 libxcb1-dev_1.9.1-3 libxdamage-dev_1:1.1.4-1 libxdamage1_1:1.1.4-1 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext-dev_2:1.3.2-1 libxext6_2:1.3.2-1 libxfixes-dev_1:5.0.1-1 libxfixes3_1:5.0.1-1 libxft2_2.3.1-1 libxm4_2.3.4-4 libxml2_2.9.1+dfsg1-3 libxmu-dev_2:1.1.1-1 libxmu-headers_2:1.1.1-1 libxmu6_2:1.1.1-1 libxrender1_1:0.9.8-1 libxt-dev_1:1.1.4-1 libxt6_1:1.1.4-1 libxxf86vm-dev_1:1.1.3-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.10.1-1+rpi1+b2 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-93 man-db_2.6.5-2 mawk_1.3.3-17 mesa-common-dev_9.1.6-2 mount_2.20.1-5.5 multiarch-support_2.17-92+rpi1 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-3 perl_5.18.1-4 perl-base_5.18.1-4 perl-modules_5.18.1-4 plymouth_0.8.8-6+deb8u1 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-tools6-dummy_0.invalid.0 sed_4.2.2-2 sensible-utils_0.0.9 sysv-rc_2.88dsf-43 sysvinit_2.88dsf-43 sysvinit-utils_2.88dsf-43 tar_1.26+dfsg-8 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013d-1 ucf_3.0027+nmu1 udev_204-5 uil_2.3.4-4 util-linux_2.20.1-5.5 x11-common_1:7.7+4 x11proto-core-dev_7.0.24-1 x11proto-damage-dev_1:1.2.1-2 x11proto-dri2-dev_2.8-2 x11proto-fixes-dev_1:5.0-2 x11proto-gl-dev_1.4.16-2 x11proto-input-dev_2.3-1 x11proto-kb-dev_1.0.6-2 x11proto-xext-dev_7.2.1-1 x11proto-xf86vidmode-dev_2.3.1-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Oct 1 15:15:19 2013 UTC using RSA key ID F14A64A2
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20120620-7.dsc
dpkg-source: info: extracting ncbi-tools6 in ncbi-tools6-6.1.20120620
dpkg-source: info: unpacking ncbi-tools6_6.1.20120620.orig.tar.gz
dpkg-source: info: applying ncbi-tools6_6.1.20120620-7.diff.gz
dpkg-source: info: upstream files that have been modified:
ncbi-tools6-6.1.20120620/api/alignmgr2.c
ncbi-tools6-6.1.20120620/api/aliread.c
ncbi-tools6-6.1.20120620/api/pgppop.c
ncbi-tools6-6.1.20120620/api/txalign.c
ncbi-tools6-6.1.20120620/corelib/ncbienv.c
ncbi-tools6-6.1.20120620/corelib/ncbimain.c
ncbi-tools6-6.1.20120620/demo/makeset.c
ncbi-tools6-6.1.20120620/desktop/bspview.c
ncbi-tools6-6.1.20120620/desktop/ingenwin.c
ncbi-tools6-6.1.20120620/desktop/seqpanel.c
ncbi-tools6-6.1.20120620/doc/firewall.html
ncbi-tools6-6.1.20120620/doc/fwd_check.sh
ncbi-tools6-6.1.20120620/doc/man/Psequin.1
ncbi-tools6-6.1.20120620/doc/man/asn2all.1
ncbi-tools6-6.1.20120620/doc/man/asn2fsa.1
ncbi-tools6-6.1.20120620/doc/man/asn2gb.1
ncbi-tools6-6.1.20120620/doc/man/asndisc.1
ncbi-tools6-6.1.20120620/doc/man/asnmacro.1
ncbi-tools6-6.1.20120620/doc/man/asntool.1
ncbi-tools6-6.1.20120620/doc/man/asnval.1
ncbi-tools6-6.1.20120620/doc/man/blast.1
ncbi-tools6-6.1.20120620/doc/man/blast2.1
ncbi-tools6-6.1.20120620/doc/man/cleanasn.1
ncbi-tools6-6.1.20120620/doc/man/idfetch.1
ncbi-tools6-6.1.20120620/doc/man/nps2gps.1
ncbi-tools6-6.1.20120620/doc/man/tbl2asn.1
ncbi-tools6-6.1.20120620/make/makeall.unx
ncbi-tools6-6.1.20120620/make/makedemo.unx
ncbi-tools6-6.1.20120620/make/makenet.unx
ncbi-tools6-6.1.20120620/make/makeshlb.unx
ncbi-tools6-6.1.20120620/tools/readdb.c
ncbi-tools6-6.1.20120620/tools/spidey.c
ncbi-tools6-6.1.20120620/vibrant/netscape.c
ncbi-tools6-6.1.20120620/vibrant/shim3d.c
ncbi-tools6-6.1.20120620/vibrant/vibmain.c
ncbi-tools6-6.1.20120620/vibrant/vibwndws.c
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=root
LS_OPTIONS=--color=auto
MAIL=/var/mail/root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-0bee2289-264d-4692-8042-404296188526
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=192.168.1.2 45410 22
SSH_CONNECTION=192.168.1.2 45410 192.168.1.45 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=root
XDG_SESSION_COOKIE=106ef489ba27ee071ab233f6518d3bce-1380046912.711892-759150774
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package ncbi-tools6
dpkg-buildpackage: source version 6.1.20120620-7
dpkg-source --before-build ncbi-tools6-6.1.20120620
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
rm -rf build/* bin/* include/* lib/* shlib
mkdir -p build bin include lib
rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory `/«PKGBUILDDIR»'
cd build && ln -s ../make/*.unx .
ln -s ../make/ln-if-absent build
mv build/makeall.unx build/makefile
chmod +x debian/makemenu debian/installman
/usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall -fPIC -D_PNG" \
LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory `/«PKGBUILDDIR»/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c
ncbithr.c: In function 's_TlsDestroyAll':
ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable]
int err_code = 0;
^
cp -p ncbithr.o ../lib
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c
ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type]
main(int argc, char *argv[])
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c
ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default]
# define __USE_BSD
^
In file included from /usr/include/arm-linux-gnueabihf/sys/types.h:25:0,
from ../include/ncbilcl.h:150,
from ../include/ncbi.h:57,
from ncbimem.c:163:
/usr/include/features.h:309:0: note: this is the location of the previous definition
# define __USE_BSD 1
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
ncbimisc.c: In function 'MergeStringArray':
ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type]
if (rsult == NULL) return;
^
ncbimisc.c: In function 'Nlm_MD5Final':
ncbimisc.c:2242:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((Nlm_Uint4Ptr) ctx->in)[14] = ctx->bits[0];
^
ncbimisc.c:2243:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((Nlm_Uint4Ptr) ctx->in)[15] = ctx->bits[1];
^
ncbimisc.c:2250:26: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
^
ncbimisc.c: In function 'XmlPathSuffixIs':
ncbimisc.c:2947:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c
asngen.c: In function 'AsnFindNthPieceOfObject':
asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable]
AsnExpOptPtr aeop;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c
asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function]
static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c
asnprint.c: In function 'GetXMLModuleName':
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
for (currmod; currmod != NULL; currmod = currmod->next)
^
asnprint.c: In function 'AsnPrintCloseStruct':
asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable]
Int2 isa;
^
asnprint.c: In function 'AsnPrintModuleXMLInc':
asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
CharPtr ptr;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c
togif.c: In function 'gdImageCreateFromGif':
togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable]
int AspectRatio;
^
togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable]
int Background;
^
togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable]
int ColorResolution;
^
gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
ncbithrs.c: In function 's_TlsDestroyAll':
ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable]
int err_code = 0;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function 're_match_2':
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p + mcnt, d, -2);
^
regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable]
const char *sdummy;
^
regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable]
unsigned char *pdummy;
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (0, 0, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (0, 0, -2);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
ncbi_socket.c: In function 's_GetLocalPort':
ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_IsConnected':
ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign]
if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:220:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockopt (int __fd, int __level, int __optname,
^
ncbi_socket.c: In function 'TRIGGER_Create':
ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable]
unsigned int x_id = ++s_ID_Counter;
^
ncbi_socket.c: In function 's_CreateListening':
ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
x_error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_Accept':
ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign]
if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:244:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int accept (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_CreateOnTop':
ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign]
if (getpeername(fd, &peer.sa, &peerlen) != 0) {
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:142:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getpeername (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
if (getsockname(fd, &peer.sa, &peerlen) != 0)
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 'DSOCK_Bind':
ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
x_error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 'DSOCK_RecvMsg':
ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign]
(struct sockaddr*) &sin, &sinlen);
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:175:16: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c
objalign.c: In function 'CommonSeqAlignLabelFunc':
objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
CharPtr curr, typelabel, tmp;
^
objalign.c: In function 'SplicedSegAsnRead':
objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseSegAsnRead':
objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedExonAsnRead':
objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedSegModifierFree':
objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'ProductPosFree':
objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'SplicedExonChunkFree':
objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'SpliceSiteAsnRead':
objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'ProtPosAsnRead':
objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseAlignAsnRead':
objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseSegExtAsnRead':
objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedSegModifierAsnRead':
objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objalign.c: In function 'SplicedExonChunkAsnRead':
objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c
objfeat.c: In function 'ModelEvidenceSupportAsnRead':
objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ExperimentSupportAsnRead':
objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ProgramIdAsnRead':
objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'EvidenceBasisAsnRead':
objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'InferenceSupportAsnRead':
objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ModelEvidenceItemAsnRead':
objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SeqFeatSupportAsnRead':
objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAQualAsnRead':
objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAQualSetAsnRead':
objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAGenAsnRead':
objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'GeneNomenclatureAsnRead':
objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRPrimerAsnRead':
objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRPrimerSetAsnRead':
objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRReactionAsnRead':
objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRReactionSetAsnRead':
objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneRefAsnRead':
objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneSeqSetAsnRead':
objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneSeqAsnRead':
objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SomaticOriginAsnRead':
objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SomaticOriginConditionAsnRead':
objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'VariationRefAsnRead':
objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ConsequenceAsnWrite':
objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable]
DataVal av;
^
objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead':
objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_frameshiftAsnRead':
objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'VarRefDataFree':
objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'VarRefDataSetAsnRead':
objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_elementFree':
objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'VariationInstAsnRead':
objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: At top level:
objfeat.c:11275:1: warning: "/*" within comment [-Wcomment]
/**************************************************
^
objfeat.c: In function 'VariantPropertiesAsnRead':
objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PhenotypeAsnRead':
objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PopulationDataAsnRead':
objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ExtLocAsnRead':
objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Seq_seqFree':
objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'DeltaItemAsnRead':
objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_elementAsnRead':
objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objfeat.c: In function 'CodeBreakAsnWrite':
objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (! AsnWrite(aip, tmp, &av)) goto erret;
^
objfeat.c: In function 'VarRefDataAsnRead':
objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c
objpub.c: In function 'PubLabelUnique':
objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable]
Int4 muid = 0, pmid = 0;
^
objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable]
Int4 muid = 0, pmid = 0;
^
objpub.c: In function 'PubSetAsnRead':
objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wmaybe-uninitialized]
pnt = (* func)(aip, atp);
^
objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
cit->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c
objscoremat.c: In function 'PssmAsnRead':
objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmIntermediateDataAsnRead':
objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmFinalDataAsnRead':
objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmParametersAsnRead':
objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmWithParametersAsnRead':
objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'BlockPropertyAsnRead':
objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'CoreBlockAsnRead':
objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'LoopConstraintAsnRead':
objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'CoreDefAsnRead':
objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'FormatRpsDbParametersAsnRead':
objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c
objseq.c: In function 'LinkageEvidenceAsnRead':
objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objseq.c: In function 'SeqGapAsnRead':
objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objseq.c: In function 'SeqDescrAsnWriteExtra':
objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
^
objseq.c: In function 'SeqDescAsnRead':
objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->data.ptrvalue = (Pointer)tmp;
^
objseq.c: In function 'BioseqAsnRead':
objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wmaybe-uninitialized]
osp->found_it = TRUE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:45:51: warning: "/*" within comment [-Wcomment]
* environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c
objprt.c: In function 'PrintFormBooleanAsnRead':
objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormBooleanFree(ptr);
^
objprt.c: In function 'PrintFormEnumAsnRead':
objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormEnumFree(ptr);
^
objprt.c: In function 'PrintFormTextAsnRead':
objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormTextFree(ptr);
^
objprt.c: In function 'PrintFormAsnRead':
objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp = PrintFormFree(vnp);
^
objprt.c: In function 'PrintFormatAsnRead':
objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormatFree(ptr);
^
objprt.c: In function 'PrintTemplateAsnRead':
objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintTemplateFree(ptr);
^
objprt.c: In function 'PrintFormBlockAsnRead':
objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormBlockFree(ptr);
^
objprt.c: In function 'UserFormatAsnRead':
objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=UserFormatFree(ptr);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c
objalignloc.c: In function 'AlignLocSetAsnRead':
objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c: In function 'Loc_locFree':
objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalignloc.c: In function 'AlignLocAsnRead':
objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'Loc_locAsnRead':
objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignIdFree':
objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignBoxAsnRead':
objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignRowsAsnRead':
objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignColumnsAsnRead':
objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c
objtable.c: In function 'SeqTableColumnInfoAsnRead':
objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableColumnAsnRead':
objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableColumnAsnWrite':
objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'SeqTableAsnRead':
objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonStringTableAsnRead':
objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonStringTableAsnWrite':
objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'CommonBytesTableAsnRead':
objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonBytesTableAsnWrite':
objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'SeqTableSingleDataFree':
objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableMultiDataAsnRead':
objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtable.c: In function 'SeqTableSparseIndexAsnRead':
objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c
objpubme.c: In function 'PubmedEntryAsnRead':
objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objpubme.c: In function 'PubmedUrlAsnRead':
objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c
objmdrs.c: In function 'MedlarsEntryAsnRead':
objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmdrs.c: In function 'MedlarsRecordAsnRead':
objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c
objproj.c: In function 'ProjectAsnRead':
objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objproj.c: In function 'ProjectDescrAsnRead':
objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objproj.c: In function 'ProjdescFree':
objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objproj.c: In function 'ProjdescAsnRead':
objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objproj.c: In function 'ProjdescAsnRead':
objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c
objgbseq.c: In function 'GBSetAsnRead':
objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBSeqAsnRead':
objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBReferenceAsnRead':
objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentAsnRead':
objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBStrucCommentAsnRead':
objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBFeatureAsnRead':
objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBFeatureSetAsnRead':
objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBAltSeqDataAsnRead':
objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBXrefAsnRead':
objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentParagraphAsnRead':
objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentItemAsnRead':
objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBStrucCommentItemAsnRead':
objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBIntervalAsnRead':
objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBQualifierAsnRead':
objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBAltSeqItemAsnRead':
objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c
objtseq.c: In function 'TSeqAsnRead':
objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtseq.c: In function 'TSeqSetAsnRead':
objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtseq.c: In function 'BioseqToTSeq':
objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
Uint1 seqcode;
^
objtseq.c: In function 'BioseqToMiniTSeq':
objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
Uint1 seqcode;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
objinsdseq.c: In function 'INSDSetAsnRead':
objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDSeqAsnRead':
objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDReferenceAsnRead':
objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentAsnRead':
objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDStrucCommentAsnRead':
objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDFeatureAsnRead':
objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDFeatureSetAsnRead':
objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDAltSeqDataAsnRead':
objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDXrefAsnRead':
objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentParagraphAsnRead':
objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentItemAsnRead':
objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDStrucCommentItemAsnRead':
objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDIntervalAsnRead':
objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDQualifierAsnRead':
objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDAltSeqItemAsnRead':
objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c
objmacro.c: In function 'AECRActionAsnRead':
objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseActionAsnRead':
objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MacroActionListAsnRead':
objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MacroActionListAsnWrite':
objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SuspectRuleSetAsnRead':
objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SuspectRuleSetAsnWrite':
objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'WordSubstitutionAsnRead':
objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c: In function 'WordSubstitutionSetAsnRead':
objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'WordSubstitutionSetAsnWrite':
objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'StringConstraintAsnRead':
objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StringConstraintSetAsnRead':
objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'StringConstraintSetAsnWrite':
objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'LocationPosConstraintFree':
objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationConstraintAsnRead':
objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalValAsnRead':
objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalValChoiceFree':
objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FeatQualLegalValChoiceAsnRead':
objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalSetAsnRead':
objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FeatQualLegalSetAsnWrite':
objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FeatQualChoiceFree':
objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FeatQualChoiceAsnRead':
objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldAsnRead':
objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldLegalAsnRead':
objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldPairAsnRead':
objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaFeatTypeFree':
objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaQualAsnRead':
objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaQualPairAsnRead':
objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualPairAsnRead':
objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualChoiceFree':
objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualTextValAsnRead':
objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualValChoiceFree':
objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualValSetAsnRead':
objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SourceQualValSetAsnWrite':
objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'CDSGeneProtFieldPairAsnRead':
objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldFree':
objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoMoleculePairAsnRead':
objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoTechniquePairAsnRead':
objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoCompletednessPairAsnRead':
objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoMolClassPairAsnRead':
objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoTopologyPairAsnRead':
objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoStrandPairAsnRead':
objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldPairFree':
objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldListAsnRead':
objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MolinfoFieldListAsnWrite':
objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MolinfoFieldConstraintAsnRead':
objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldFree':
objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldPairAsnRead':
objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldPairAsnWrite':
objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'DBLinkFieldPairAsnRead':
objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldConstraintAsnRead':
objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeFree':
objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldSpecialConstraintAsnRead':
objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PublicationConstraintAsnRead':
objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceConstraintAsnRead':
objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead':
objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtConstraintFieldFree':
objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead':
objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead':
objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite':
objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FieldConstraintAsnRead':
objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldConstraintAsnWrite':
objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FieldTypeFree':
objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree':
objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'QuantityConstraintFree':
objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceConstraintAsnRead':
objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TranslationConstraintAsnRead':
objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConstraintChoiceFree':
objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConstraintChoiceSetAsnRead':
objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'ConstraintChoiceSetAsnWrite':
objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextMarkerFree':
objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TextPortionAsnRead':
objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldEditAsnRead':
objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldPairTypeFree':
objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyActionAsnRead':
objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditActionAsnRead':
objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditActionAsnWrite':
objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextTransformFree':
objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TextTransformAsnRead':
objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TextTransformSetAsnRead':
objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextTransformSetAsnWrite':
objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'ConvertActionAsnRead':
objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CopyActionAsnRead':
objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SwapActionAsnRead':
objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SwapActionAsnWrite':
objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'AECRParseActionAsnRead':
objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveActionAsnRead':
objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveActionAsnWrite':
objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveOutsideActionAsnRead':
objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ActionChoiceFree':
objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcOrgChoiceFree':
objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcOrgAsnRead':
objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcGeneralIdFree':
objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcFree':
objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseDstOrgAsnRead':
objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseDestFree':
objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationIntervalAsnRead':
objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationChoiceFree':
objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceListAsnRead':
objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SequenceListAsnWrite':
objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SequenceListChoiceFree':
objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SequenceListChoiceAsnRead':
objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyFeatureActionAsnRead':
objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveFeatureActionAsnRead':
objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFromCDSOptionsAsnRead':
objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureSrcOptionsFree':
objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead':
objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RegionTypeAsnRead':
objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureDstOptionsFree':
objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureActionAsnRead':
objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditLocationStrandAsnRead':
objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'Partial5SetActionAsnRead':
objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'Partial3SetActionAsnRead':
objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PartialBothSetActionAsnRead':
objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ExtendToFeatureAsnRead':
objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationEditTypeFree':
objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditFeatureLocationActionAsnRead':
objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoBlockAsnRead':
objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoBlockAsnWrite':
objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveDescriptorActionAsnRead':
objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AutodefActionAsnRead':
objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c: In function 'FixPubCapsActionAsnRead':
objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SortFieldsActionAsnRead':
objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixAuthorCapsAsnRead':
objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixCapsActionFree':
objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixFormatActionFree':
objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead':
objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'GeneXrefTypeAsnRead':
objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'XrefTypeFree':
objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'XrefTypeAsnRead':
objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveXrefsActionAsnRead':
objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveXrefsActionAsnWrite':
objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MakeGeneXrefActionAsnRead':
objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AuthorFixActionAsnRead':
objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'UpdateSequencesActionAsnRead':
objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CreateTSAIdsSrcFree':
objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'CreateTSAIdsSrcAsnRead':
objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CreateTSAIdsActionAsnRead':
objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AutofixActionAsnRead':
objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixSetsActionFree':
objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TableMatchTypeFree':
objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TableMatchAsnRead':
objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyTableExtraDataFree':
objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ApplyTableExtraDataAsnRead':
objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyTableActionAsnRead':
objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddFileActionAsnRead':
objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddDescriptorListActionAsnRead':
objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddDescriptorListActionAsnWrite':
objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveSequencesActionAsnRead':
objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveSequencesActionAsnWrite':
objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MacroActionChoiceFree':
objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SearchFuncFree':
objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SimpleReplaceAsnRead':
objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ReplaceFuncFree':
objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ReplaceFuncAsnRead':
objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ReplaceRuleAsnRead':
objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SuspectRuleAsnRead':
objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c
objent2.c: In function 'Entrez2IdListAsnRead':
objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanExpAsnRead':
objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2BooleanElementFree':
objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LimitsAsnRead':
objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanTermAsnRead':
objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2RequestAsnRead':
objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'E2RequestFree':
objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'E2RequestAsnRead':
objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2EvalBooleanAsnRead':
objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermQueryAsnRead':
objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermPosAsnRead':
objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2HierQueryAsnRead':
objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2GetLinksAsnRead':
objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2IdAsnRead':
objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DtFilterAsnRead':
objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2ReplyAsnRead':
objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'E2ReplyFree':
objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2InfoAsnRead':
objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2BooleanReplyAsnRead':
objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumListAsnRead':
objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2TermListAsnRead':
objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2HierNodeAsnRead':
objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2LinkSetAsnRead':
objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkCountListAsnRead':
objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2DbInfoAsnRead':
objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2FieldInfoAsnRead':
objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkInfoAsnRead':
objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead':
objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumAsnRead':
objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2DocsumDataAsnRead':
objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermAsnRead':
objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkCountAsnRead':
objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c
pmfapi.c: In function 'PubMedSynchronousQuery':
pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQueryEx':
pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQueryTI':
pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQuerySRA':
pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiRevHistSynchronousQuery':
pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiAccVerSynchronousQuery':
pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'AccnRevHistSynchronousQuery':
pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiSeqIdSetSynchronousQuery':
pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'AccnListSynchronousQuery':
pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c
objtax3.c: In function 'Taxon3RequestAsnRead':
objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3RequestFree':
objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'SequenceOfIntAsnRead':
objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'Taxon3ReplyAsnRead':
objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3ReplyFree':
objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'T3ErrorAsnRead':
objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3DataAsnRead':
objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'Value_valueFree':
objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3RefreshFlagsAsnRead':
objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objtax3.c: In function 'T3RequestAsnRead':
objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c: In function 'T3ReplyAsnRead':
objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c:1361:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c
tax3api.c: In function 'Tax3SynchronousQuery':
tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable]
time_t t1, t2, t3;
^
tax3api.c: In function 'CheckSuggestedFixes':
tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'TryNewSuggestedFixes':
tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'GetSuggestedNamesFromRank':
tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'BioSourceFromBioSample':
tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable]
time_t max = 0;
^
tax3api.c: At top level:
tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function]
static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
^
tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function]
static Boolean HasMisspellingFlag (T3DataPtr t)
^
tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK TaxFixItemOrigIsOk (ValNodePtr vnp)
^
tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function]
static Boolean EndsWithSp (CharPtr str)
^
tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function]
static Boolean StringIsExactMatchForOrgRef (CharPtr str, OrgRefPtr org)
^
tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function]
static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c
objentgene.c: In function 'EntrezgeneAsnRead':
objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'EntrezgeneSetAsnRead':
objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objentgene.c: In function 'EntrezgeneSetAsnWrite':
objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objentgene.c: In function 'GeneTrackAsnRead':
objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'GeneCommentaryAsnRead':
objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'Method_methodFree':
objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'Method_methodAsnRead':
objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'GeneSourceAsnRead':
objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'XtraTermsAsnRead':
objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'OtherSourceAsnRead':
objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objentgene.c:1166:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c
objmla2.c: In function 'Mla2RequestFree':
objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla2.c: In function 'TitleMsg2AsnRead':
objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla2.c: In function 'TitleMsgList2AsnRead':
objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmla2.c: In function 'Mla2BackAsnRead':
objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c
qblastapi.c: In function 'SecondQBlastCallback':
qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable]
Boolean waiting = FALSE;
^
qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx':
qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
EIO_Status status;
^
qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx':
qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
EIO_Status status;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c
objmim.c: In function 'MimSetAsnRead':
objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimDateAsnRead':
objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimEntryAsnRead':
objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimCitAsnRead':
objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimTextAsnRead':
objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimEditItemAsnRead':
objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimAllelicVariantAsnRead':
objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimIndexTermAsnRead':
objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimReferenceAsnRead':
objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimLinkAsnRead':
objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimAuthorAsnRead':
objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimPageAsnRead':
objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c
objvalid.c: In function 'FieldRuleAsnRead':
objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'FieldSetAsnRead':
objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'FieldSetAsnWrite':
objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'DependentFieldRuleAsnRead':
objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'DependentFieldSetAsnRead':
objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'DependentFieldSetAsnWrite':
objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'CommentRuleAsnRead':
objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'CommentSetAsnRead':
objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'CommentSetAsnWrite':
objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c
seqport.c: In function 'productLoc_to_locationLoc':
seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable]
Boolean is_cdregion = FALSE;
^
seqport.c: In function 'NaLocFromNaInterval':
seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable]
Int4 p_end_pos; /*the end of the product sequence in the current loc*/
^
seqport.c: In function 'dnaLoc_to_aaLoc':
seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable]
Int4 cds_left, cds_right;
^
seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable]
Int4 cds_left, cds_right;
^
seqport.c: In function 'DeltaRevComp':
seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
DeltaSeqPtr dsp, dspnext;
^
seqport.c: In function 'SeqSearchEnterNucWord':
seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
Int2 next, patLen, state;
^
seqport.c: In function 'ProtSearchEnterProtWord':
seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
Int2 next, patLen, state;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c
sequtil.c: In function 'GetPointsForLeftAndRightOffsets':
sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable]
Uint1 first_strand, last_strand;
^
sequtil.c: In function 'SeqPointWriteEx':
sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable]
Int4 fuzzlen, id_len;
^
sequtil.c: In function 'TaxNameFromCommon':
sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces]
"Chinese hamsters", "Cricetulus sp."
^
sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces]
sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr':
sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable]
Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
^
sequtil.c: In function 'SeqIdFromAccessionEx':
sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable]
SeqIdPtr sip2;
^
sequtil.c: In function 'GenericCompressDNAEx':
sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'BSCompressDNAOld':
sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'BSConvertSeq':
sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'SeqLocCoverage':
sequtil.c:6905:23: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (SeqIdComp (sip, id_list[j]) == SIC_YES) {
^
sequtil.c: In function 'GetThePointForOffsetEx':
sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (last_strand == Seq_strand_minus)
^
sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (first_strand == Seq_strand_minus)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c
prtutil.c: In function 'StdFormatPrint':
prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable]
CharPtr ptr = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from simple.c:69:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
#define RNA_QUAL &at[2231]
^
../include/all.h:5745:0: note: this is the location of the previous definition
#define RNA_QUAL &at[1023]
^
simple.c: In function 'SimpleSeqAsnRead':
simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
b <<= 4;
^
simple.c:170:17: note: 'b' was declared here
Uint1 base, b;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c
tofasta.c: In function 'DoSpecialDefline':
tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr gene = NULL;
^
tofasta.c: At top level:
tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function]
static Boolean get_descr_on_top (GatherContextPtr gcp)
^
tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function]
static Boolean get_descr (GatherContextPtr gcp)
^
tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function]
static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
^
tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function]
static SeqFeatPtr GetCDSProtUnindexed (
^
tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function]
static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
^
tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function]
static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
^
tofasta.c: In function 'FastaReadSequenceInternalEx':
tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wmaybe-uninitialized]
mask_sint->to = mask_to;
^
tofasta.c: In function 'FastaToSeqEntryInternalExEx':
tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
ungetc(ch, fd);
^
tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wmaybe-uninitialized]
const Char PNTR firstchar;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c
valid.c: In function 'Valid1GatherProc':
valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable]
EFieldValid sc_valid;
^
valid.c: In function 'ValidateSeqIdCase':
valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateGenProdSet':
valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'CountAdjacentProc':
valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateBioseqInst':
valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
Uint1 tech;
^
valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable]
SeqFeatPtr prot;
^
valid.c: In function 'ValidateBioSource':
valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable]
Int4 id;
^
valid.c: In function 'ValidateDblink':
valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateSeqDescrCommon':
valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
PubdescPtr pdp;
^
valid.c: In function 'ValidateBioseqContextIndexed':
valid.c:17742:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
^
valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr cdsgene, utr5gene, utr3gene;
^
valid.c: In function 'ValidateBarcodeIndexNumber':
valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable]
Int4 bin_len;
^
valid.c: In function 'ValidateBioseqContext':
valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable]
CharPtr taxname = NULL;
^
valid.c: In function 'ValidateRptUnit':
valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean badchars, found, just_nuc_letters, multi_rpt_unit;
^
valid.c: In function 'CheckForCommonCDSProduct':
valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable]
Boolean is_nw = FALSE;
^
valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable]
Boolean is_nc = FALSE;
^
valid.c: In function 'CheckForIllegalDbxref':
valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable]
Int4 id;
^
valid.c: In function 'ValidateAnticodon':
valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable]
ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
^
valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
^
valid.c: In function 'IsGeneXrefRedundant':
valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
valid.c: In function 'ValidateSeqFeat':
valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
PubdescPtr pdp;
^
valid.c: In function 'CdTransCheck':
valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'SpliceCheckEx':
valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
valid.c: In function 'CdsProductIdCheck':
valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'ValidateSeqLoc':
valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
^
valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqLocPtr tmp, prev;
^
valid.c: At top level:
valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function]
static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
^
valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function]
static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
^
valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function]
static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
^
valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function]
static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
^
valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function]
static Boolean ConsistentWithC (Char ch)
^
valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function]
static Boolean LatLonIsValid (CharPtr name)
^
valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function]
static Boolean LatLonInRange (
^
valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function]
static Boolean CountryIsClosestToLatLon (
^
valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function]
static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
^
valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function]
static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
^
valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function]
static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c
valapi.c: In function 'DoesStringMatchExpression':
valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable]
const char *errstr;
^
valapi.c: In function 'ReorderStructuredCommentFields':
valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable]
UserFieldPtr ufp, ufp_prev = NULL, new_list = NULL, new_prev = NULL, ufp_next, ufp_last = NULL;
^
valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable]
UserFieldPtr ufp, ufp_prev = NULL, new_list = NULL, new_prev = NULL, ufp_next, ufp_last = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c
alignmgr.c: In function 'AlnMgrIndexParentSA':
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
sap->saip = (Pointer)AMAlignIndexFree(amaip);
^
alignmgr.c: In function 'AlnMgrGetNthBlockRange':
alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
AMAlignIndexPtr amaip;
^
alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx':
alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable]
Boolean nogap;
^
alignmgr.c: In function 'AlnMgrMapBioseqToBioseq':
alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Uint1 gap;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function]
static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
^
alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function]
static Boolean am_merge_after_edit (SeqAlignPtr sap)
^
alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function]
static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
^
alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function]
static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
^
alignmgr.c: In function 'AlnMgrUnpackSeqAlign':
alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
^
alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList':
alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->next = sip_tmp2;
^
alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA':
alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
*stop = tmp_end;
^
alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = tmp_beg;
^
alignmgr.c: In function 'AlnMgrDeleteNthRow':
alignmgr.c:9809:31: warning: 'abp_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
abp_prev->next = abp;
^
alignmgr.c: In function 'AlnMgrGetSubAlign':
alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp = am_cleanupsalp(salp);
^
alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster':
alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp->master = SeqIdDup(sip);
^
alignmgr.c:5553:17: note: 'sip_tmp' was declared here
SeqIdPtr sip_tmp;
^
alignmgr.c:5885:21: warning: 'sip_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip_tmp = sip_tmp->next;
^
alignmgr.c:5846:18: note: 'sip_tmp' was declared here
SeqIdPtr sip_tmp;
^
alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (sip && !done)
^
alignmgr.c:5845:18: note: 'sip_head' was declared here
SeqIdPtr sip_head;
^
alignmgr.c: In function 'am_is_consistent':
alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c
aliparse.c: In function 's_IsInterleaved':
aliparse.c:929:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(s_configInfo.useMaybes == FALSE) &&
^
aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable]
Boolean isMaybe;
^
aliparse.c: In function 's_ProcessInterId':
aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_ProcessInterSeq':
aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr = NULL;
^
aliparse.c: In function 's_AnalyzeInterleaved':
aliparse.c:1193:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
^
aliparse.c: In function 's_ProcessContigId':
aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_ProcessContigSeq':
aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_AnalyzeContiguous':
aliparse.c:1603:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
^
aliparse.c: In function 's_CheckContext':
aliparse.c:2150:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) &&
^
aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 'PrintOutMultAlign':
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
for (d; d<spacer; d++)
^
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable]
SeqDescrPtr sdp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function]
static void s_FreeRowList (ValNodePtr rowList)
^
aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function]
static int s_SegCompare(const void *i,
^
aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function]
static void PrintOutMultAlign(SeqAlignPtr sap)
^
aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function]
static void PrintOutSegs(SeqAlignPtr sap)
^
aliparse.c: In function 's_GetRowIdString':
aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wmaybe-uninitialized]
CharPtr newIdStr;
^
aliparse.c: In function 's_ProcessMaybes':
aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wmaybe-uninitialized]
lastSeqPart->next = newSeqPart;
^
aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (StringCmp(existingId->id,currentIdStr) == 0)
^
aliparse.c: In function 'Ali_Read':
aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
^
aliparse.c:1154:20: note: 'previousLength' was declared here
Int4 previousLength;
^
aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wmaybe-uninitialized]
(seqLinePtr->maybe == FALSE))
^
aliparse.c:820:20: note: 'seqLinePtr' was declared here
SeqLineInfoPtr seqLinePtr;
^
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignAddInSeqEntry (sep_head, sanp);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from aliread.c:6:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c
alignval.c: In function 'ValidateSeqlengthInDenseSeg':
alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
^
alignval.c: In function 'PercentStringMatch':
alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, min_len, k, max_len;
^
alignval.c: In function 'CheckAlnSeqLens':
alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable]
Int4 aln_len, start, stop;
^
alignval.c: In function 'ValidateSeqAlign':
alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
MsgAnswer ans;
^
alignval.c: In function 'GetAlignmentColumnPercentIdentities':
alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
Int4 num_match;
^
alignval.c: In function 'WeightedAlignmentPercentIdentity':
alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
Int4 num_match;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function]
static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
^
alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function]
static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
^
alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function]
static void CheckAlnSeqLens (SeqAlignPtr salp)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
sqnutil1.c: In function 'GeneExtendFunc':
sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
sqnutil1.c: In function 'ParseAnticodon':
sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
sqnutil1.c: In function 'ParseCodeBreak':
sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
sqnutil1.c: In function 'CleanOrgModListEx':
sqnutil1.c:6276:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if (last->subtype == omp->subtype &&
^
sqnutil1.c: In function 'CleanUpPubdescAuthors':
sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
ValNodePtr PNTR prev;
^
sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs':
sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil1.c: In function 'LinkTwoFeatures':
sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
SeqFeatXrefPtr xref, prev_xref, next_xref;
^
sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback':
sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable]
Uint1 rcodon [4];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function]
static Boolean GeneExtendFunc (GatherContextPtr gcp)
^
sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function]
static void CleanupConsSplice (GBQualPtr gbq)
^
sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function]
static Boolean IsStringSingleToken (CharPtr str)
^
sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function]
static void SortGoTermsSfp (
^
sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function]
static CharPtr CleanUpSgml (
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
sqnutil2.c: In function 'FindResidueByName':
sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Uint1 last;
^
sqnutil2.c: In function 'ReadFeatureTableEx':
sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable]
Boolean isnote;
^
sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable]
Boolean endsinspace;
^
sqnutil2.c: In function 'SeqEntryCopyReplace':
sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable]
Uint1 type = 0;
^
sqnutil2.c: In function 'StreamingReadBioseq':
sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable]
Int2 level;
^
sqnutil2.c: In function 'StreamAsnForDescriptors':
sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
^
sqnutil2.c: In function 'StreamingReadWriteSeqSubmit':
sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label]
ret:
^
sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors':
sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
^
sqnutil2.c: In function 'ReadFeatureTableFile':
sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable]
Int4 begin;
^
sqnutil2.c: In function 'ReadFastaOnly':
sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
Char seqid [2048];
^
sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline':
sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
Char line [4096], seqid [2048];
^
sqnutil2.c: In function 'PrintQualityScoresToBuffer':
sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil2.c: In function 'GetScoresbySeqId':
sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil2.c: In function 'IsStringInSpanInList':
sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable]
Int4 str_val;
^
sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable]
Int4 prefix_len = 0, suffix_len;
^
sqnutil2.c: In function 'CreateStructuredCommentsFromFile':
sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable]
ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
^
sqnutil2.c: In function 'AlignmentIntervalToString':
sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable]
Uint1 target_strand;
^
sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
Int4 seq_len;
^
sqnutil2.c: In function 'AdjustForConsensusSpliceCallback':
sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable]
Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE;
^
sqnutil2.c: In function 'RemoveGIProc':
sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function]
static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
^
sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function]
static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
^
sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function]
static void RevCompFeatsOnBioseq (BioseqPtr bsp)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap':
sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil3.c: In function 'CautiousSeqEntryCleanup':
sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable]
Boolean taxserver;
^
sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences':
sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp, new_bsp = NULL;
^
sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sub_sep, prev_sep, next_sep;
^
sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx':
sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable]
Int4 index, curr_seg, num_sets;
^
sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp_list, salp_last;
^
sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp_list, salp_last;
^
sqnutil3.c: In function 'GetCDSformRNA':
sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil3.c: In function 'FindTextInFlatfileEx':
sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
Boolean okay;
^
sqnutil3.c: In function 'CheckForTitleAuthorConflicts':
sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable]
Boolean author_conflict = FALSE;
^
sqnutil3.c: In function 'SortVnpByBspProjectId':
sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress]
if (vnp1 != NULL &&& vnp2 != NULL) {
^
sqnutil3.c: In function 'GetDiscrepancyItemTextEx':
sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
Boolean special_flag = FALSE;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function]
static ValNodePtr FreePrefixCheckList (ValNodePtr prefix_list)
^
sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function]
static ClickableItemPtr InconsistentLocusTagPrefix (PrefixCheckPtr pcp)
^
sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function]
static void GeneLocusTagDiscrepancyCallback (ValNodePtr item_list, Pointer userdata)
^
sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function]
static void ExtractVnpByStringSearch (ValNodePtr PNTR list, CharPtr search)
^
sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function]
static Boolean ContainsBracketsOrParentheses (CharPtr pattern, CharPtr search)
^
sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function]
static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
^
sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function]
static int LIBCALLBACK SortVnpByHaplotypeThenSequenceAllowNDiff (VoidPtr ptr1, VoidPtr ptr2)
^
sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function]
static Boolean FeatureCountHasNumFeats (ValNodePtr vnp, Pointer data)
^
sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function]
static void FindSuspectrRNAProductsCallback (SeqFeatPtr sfp, Pointer data)
^
sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function]
static void FindBadGPS (BioseqPtr bsp, Pointer userdata)
^
sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function]
BarcodeTestForSeqEntry
^
sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function]
static void TestLatLonFormatting (FILE *fp)
^
sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback':
sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (diff < best_diff) {
^
sqnutil3.c: In function 'ValidateInferenceQualifier':
sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wmaybe-uninitialized]
ch = *rest;
^
sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (best == 12) {
^
sqnutil3.c: In function 'tRNASameStrandBioseqCallback':
sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (strand == Seq_strand_minus) {
^
sqnutil3.c: In function 'CheckForDivConflicts':
sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
else ValNodeAddPointer(&(grp_sdp[i]), OBJ_SEQDESC, sdp);
^
sqnutil3.c: In function 'FindMismatchedComments':
sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
^
sqnutil3.c: In function 'FixCountryColons':
sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (ssp = biop->subtype; ssp != NULL; ssp = ssp->next) {
^
sqnutil3.c: In function 'AddmRNAForCDS':
sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wmaybe-uninitialized]
return rna;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
sqnutil4.c: In function 'ListClauses':
sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable]
FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
^
sqnutil4.c: In function 'SmashOneTallClause':
sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable]
ValNodePtr subclause_featlist;
^
sqnutil4.c: In function 'GetFeatureClauseForSeg':
sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start, stop;
^
sqnutil4.c: In function 'IsAmplifiedMiscFeat':
sqnutil4.c:10701:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& (StringNICmp (sfp->comment, phrase1, StringLen (phrase1)) == 0)
^
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil4.c: In function 'ExtraCDSCreationActions':
sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr psep, nsep;
^
sqnutil4.c: In function 'TESTDisplayQualCombo':
sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Int4 val;
^
sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS':
sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable]
CdRegionPtr crp;
^
sqnutil4.c: In function 'AddNewUniqueAnnotations':
sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
^
sqnutil4.c: In function 'AssignBioseqToLineageGroup':
sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable]
ValNodePtr list, vnp, vnp_last = NULL;
^
sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile':
sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int4 count;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sqnutil4.c:63:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function]
static Int4 CountFeatures (
^
sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function]
static void RemoveFeats (
^
sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function]
static void SmashTallClauses (
^
sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function]
static ValNodePtr RemoveAllButLastCDS (
^
sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function]
static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
^
sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function]
static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
^
sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function]
static void TESTDisplayList (ValNodePtr new_list)
^
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wmaybe-uninitialized]
sfp->qual = topOfGbqList;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c
subutil.c: In function 'AddSeqLitToBioseq':
subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
subutil.c: In function 'AddReferenceToSegmentedEntry':
subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqEntryPtr tmp, prev;
^
subutil.c: In function 'GetDNAConv':
subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts]
dnaconv[*ptr] = *ptr;
^
subutil.c: In function 'GetProteinConv':
subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts]
protconv[*ptr] = *ptr;
^
subutil.c: In function 'AddBasesToByteStore':
subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts]
residue = dnaconv[ch];
^
subutil.c: In function 'AddAAsToByteStore':
subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts]
residue = aaconv[ch];
^
subutil.c: In function 'CitArtBuild':
subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, tmp;
^
subutil.c: At top level:
subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function]
static SeqEntryPtr TranslateCdRegionNew (
^
subutil.c: In function 'AddGapToSegmentedEntry':
subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->id = SeqIdDup(bsp->id);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c
edutil.c: In function 'SeqLocsToDeltaSeqs':
edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable]
SeqIdPtr sip;
^
edutil.c: In function 'SeqLocCopyPart':
edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable]
Boolean done, started, wasa_null, hada_null;
^
edutil.c: In function 'IndexedSeqFeatsCopy':
edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
ValNodePtr region;
^
edutil.c: In function 'SeqFeatsCopy':
edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
ValNodePtr region;
^
edutil.c: In function 'SeqLocInsert':
edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff, numpnt, i, tpos;
^
edutil.c: In function 'SeqEdRecreateDeletedFeats':
edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SeqFeatPtr sfp;
^
edutil.c: In function 'SeqEdSeqLocInsert':
edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff, numpnt, i, tpos;
^
edutil.c: In function 'SeqEdSeqLocDelete':
edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff;
^
edutil.c: In function 'SeqEdInsertAdjustFeat':
edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c: In function 'SeqEdDeleteFromBsp':
edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable]
Boolean merge_mode;
^
edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable]
Boolean feats_altered = FALSE;
^
edutil.c: In function 'BioseqCopyEx':
edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wmaybe-uninitialized]
newbsp->seq_ext = (Pointer)head;
^
edutil.c: In function 'BioseqInsert':
cc1: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow]
edutil.c: In function 'SeqEdInsert':
cc1: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
asn2ff1.c: In function 'asn2ff_print':
asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable]
DescrStructPtr dsp = NULL;
^
asn2ff1.c: In function 'Asn2ffJobCreate':
asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID = 0;
^
asn2ff1.c: In function 'SeqEntryToEntrez':
asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp = NULL;
^
asn2ff1.c: In function 'SeqLocToFlat':
asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID=0;
^
asn2ff1.c: In function 'asn2ff_setup':
asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp;
^
asn2ff1.c: In function 'PrintStatusLine':
asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable]
CharPtr u, ptr=NULL;
^
asn2ff1.c: In function 'asn2gb_setup':
asn2ff1.c:2403:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff1.c:45:
asn2ff1.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function]
static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
^
asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function]
static Boolean find_user_object(BioseqPtr bsp)
^
asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function]
static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff1.c: In function 'asn2embl_setup':
asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (max == index+1) {
^
asn2ff1.c: In function 'asn2gp_setup':
asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (index=0; index < feat_num; index++) {
^
asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq':
asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean rsult;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
asn2ff2.c: In function 'GetStrForBankit':
asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable]
Int2 i=0, ptrlen = 0;
^
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable]
CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
^
asn2ff2.c: In function 'GP_GetSeqDescrComms':
asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable]
Boolean got_comment=FALSE;
^
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type]
static ChoicePID(SeqIdPtr sid)
^
asn2ff2.c: In function 'GetGibbsqCommentLength':
asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable]
Int4 gibbsq=0, total;
^
asn2ff2.c: In function 'GatherDescrByChoice':
asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable]
Uint2 bspID;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff2.c:218:
asn2ff2.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable]
static Boolean has_comment;
^
asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function]
static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function]
static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_other == TRUE && mfp->completeness) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
asn2ff3.c: In function 'PutGeneFirst':
asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable]
GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
^
asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable]
Boolean still_looking=TRUE;
^
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable]
Int4 Locus_id = 0;
^
asn2ff3.c: In function 'Add_gene_id':
asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat=]
sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
^
asn2ff3.c: In function 'Add_trid':
asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable]
Int4 gi = -1;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff3.c:628:
asn2ff3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function]
static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
^
asn2ff3.c: In function 'GettRNAaa':
asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((table=SeqCodeTableFind (seq_code)) != NULL)
^
asn2ff3.c: In function 'Add_dbxref.isra.0':
asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (val[0] != '\0') {
^
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1832:10: warning: 'ne_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(temp, " %d %s ESTs", ne, ne_name);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
asn2ff4.c: In function 'FlatLocPoint':
asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable]
static Uint1 order[NUM_SEQID];
^
asn2ff4.c: In function 'do_FlatLoc':
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if ( ! FlatVirtLoc( bsp, slp))
^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type]
static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
^
asn2ff4.c: In function 'CreateImpFeatFromProt':
asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
asn2ff4.c: In function 'MatchNAGeneToFeat':
asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
NoteStructPtr nsp; /* UNUSED */
^
asn2ff4.c: In function 'MatchAAGeneToFeat':
asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
NoteStructPtr nsp; /* UNUSED */
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff4.c:273:
asn2ff4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff4.c: In function 'CheckNewSfpLoc.isra.0':
asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
asn2ff5.c: In function 'format_cit_sub':
asn2ff5.c:1023:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
format == EMBLPEPT_FMT && afp->choice == 1)
^
asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable]
Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
^
asn2ff5.c: In function 'format_thesis':
asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/embl_format = FALSE;
^
asn2ff5.c: In function 'format_book':
asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
Boolean embl_format = FALSE;
^
asn2ff5.c: In function 'format_jourarticle':
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (ip->pages != NULL)
^
asn2ff5.c: In function 'StripParanthesis':
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
temp++; *ptr_in++;
^
asn2ff5.c: In function 'PostARefErrMessage':
asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff5.c:177:
asn2ff5.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function]
static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
^
asn2ff5.c: In function 'FlatJournal':
asn2ff5.c:1051:11: warning: 'afp' may be used uninitialized in this function [-Wmaybe-uninitialized]
AffilPtr afp;
^
asn2ff5.c:2073:10: warning: 'temp' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp = StringMove (temp," ");
^
asn2ff5.c:1946:23: note: 'temp' was declared here
CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL;
^
asn2ff5.c: In function 'CheckPubs':
asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wmaybe-uninitialized]
PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
asn2ff6.c: In function 'AddGBQual':
asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable]
GBQualPtr curq, note = NULL;
^
asn2ff6.c: In function 'BioseqGetGBDivCodeEx':
asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int2 tech, /*UNUSED*/diff, retval = 0;
^
asn2ff6.c: In function 'GR_PrintPubs':
asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable]
CharPtr descr = NULL;
^
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable]
Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
^
asn2ff6.c: In function 'ValidateOtherAccession':
asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable]
Boolean FirstLetter=FALSE, FiveNum = FALSE;
^
asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable]
Boolean FirstLetter=FALSE, FiveNum = FALSE;
^
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/ncbi = FALSE;
^
In file included from ../include/asn2ff6.h:142:0,
from asn2ff6.c:347:
asn2ff6.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function]
static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
^
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:44: warning: 'exp' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
^
asn2ff6.c: In function 'MakeBaseLocusAwp':
asn2ff6.c:3070:49: warning: 'num_of_digits' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 index, length, base_locus_max, name_len, num_of_digits, num_seg;
^
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wmaybe-uninitialized]
si->to = bsp->length - 1;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
asn2gnb1.c: In function 'IsWholeWordSubstr':
asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable]
Boolean left, right;
^
asn2gnb1.c: In function 'DoOneSection':
asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable]
BlockMask bkmask;
^
asn2gnb1.c: In function 'Count2Seg':
asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable]
Int4 to;
^
asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable]
BioseqPtr parent;
^
asn2gnb1.c: At top level:
asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces]
{TRUE, TRUE, TRUE, TRUE, TRUE,
^
asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces]
asn2gnb1.c: In function 'SeqIdWriteForTable':
asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable]
pdb = NULL, general = NULL, gi = NULL;
^
asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable]
SeqIdPtr accn = NULL, local = NULL, patent = NULL,
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb1.c:43:
asn2gnb1.c: In function 'DoImmediateFormat':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb1.c:6704:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable]
Boolean is_www;
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb1.c:43:
asn2gnb1.c: In function 'asn2gnbk_format':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb1.c:6825:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb1.c: In function 'asn2gnbk_cleanup':
asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
asn2gnb1.c: In function 'SeqEntryToGnbk':
asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable]
Pointer userdata = NULL;
^
asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable]
GBSeqPtr gbseq = NULL;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
asn2gnb2.c: In function 's_LocusAddSuffix':
asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable]
Char ch;
^
asn2gnb2.c: In function 'AddLocusBlock':
asn2gnb2.c:1323:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
^
asn2gnb2.c: In function 'AddDblinkBlock':
asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable]
Int4 parentID;
^
asn2gnb2.c: In function 'GetRefsOnBioseq':
asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable]
Int4 right;
^
asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable]
Int4 left;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb2.c:57:
asn2gnb2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
asn2gnb3.c: In function 'GetStatusForRefTrack':
asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable]
UserFieldPtr ufp, urf = NULL;
^
asn2gnb3.c: In function 'GetSourcesOnBioseq':
asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start;
^
asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb3.c: In function 'GetFeatsOnCdsProduct':
asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
Boolean isRefSeq;
^
asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct':
asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable]
SeqFeatPtr lastsfp;
^
asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr lastsap;
^
asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable]
Int4 lastright;
^
asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable]
Int4 lastleft;
^
asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
Boolean isRefSeq;
^
asn2gnb3.c: In function 'GetFeatsOnBioseq':
asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start;
^
asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable]
IntCdsBlockPtr icp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
asn2gnb4.c: In function 'FormatFeatureBlockQuals':
asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment]
StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
^
asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable]
Boolean at_end = FALSE;
^
asn2gnb4.c: In function 'FF_asn2gb_www_featkey':
asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
CharPtr prefix = "?";
^
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb4.c:42:
asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb4.c:8448:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb4.c: In function 'FormatFeatureQuals':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb4.c:8521:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
oldscope = SeqEntrySetScope (sep);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
asn2gnb5.c: In function 'FormatCitBookArt':
asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
asn2gnb6.c: In function 'FlatLocElement':
asn2gnb6.c:2386:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (sintp->to > 0 &&
^
asn2gnb6.c: In function 'FormatContigBlock':
asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
DeltaSeqPtr dspnext;
^
asn2gnb6.c: In function 'FormatSequenceBlock':
asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function 'CkLabelType':
gbfeat.c:1529:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c
gbparint.c: In function 'Nlm_gbparselex':
gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (*current_col != '\0')
^
gbparint.c: In function 'Nlm_gbparselex_ver':
gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (*current_col != '\0')
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces]
"Ala", 'A',
^
utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c
utilpub.c: In function 'FindCit':
utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
ImpFeatPtr /*UNUSED*/ifp;
^
utilpub.c: In function 'ChangeCitQual':
utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
^
utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
ValNodePtr PNTR vnpp, /*UNUSED*/descr;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c
ffprint.c: In function 'FFBSPrint':
ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable]
ByteStorePtr byte_sp = NULL;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from ffprint.c:127:
ffprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function]
static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c
wprint.c: In function 'LocPrintGenome':
wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep = NULL;
^
wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable]
BioseqPtr bsp = NULL, b = NULL;
^
wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp = NULL, b = NULL;
^
wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable]
static Char buf[14], val[166], temp[166];
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from wprint.c:51:
wprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable]
static Char link_pir[MAX_WWWBUF];
^
wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable]
static Char link_gdb_map[MAX_WWWBUF];
^
wprint.c: In function 'www_xref':
wprint.c:1378:18: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized]
ll = StringLen(prefix);
^
wprint.c:1377:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
l = StringLen(link);
^
wprint.c: In function 'www_xref_button':
wprint.c:1421:18: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized]
ll = StringLen(prefix);
^
wprint.c:1420:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
l = StringLen(link);
^
wprint.c: In function 'PrintSPBlock':
wprint.c:1570:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddLink(s);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
Boolean check_gap;
^
satutil.c: At top level:
satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function]
static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
^
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_slp = map_one_location(c_slp, align, target_id, gap_choice, &r_start, &r_stop);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c
seqmgr.c: In function 'SeqEntrySetScope':
seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
seqmgr.c: In function 'ClearBioseqFindCache':
seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable]
SeqMgrPtr smp;
^
seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp':
seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
ObjMgrPtr omp;
^
seqmgr.c: In function 'CheckForTransSplice':
seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqLocPtr prev, tmp;
^
seqmgr.c: In function 'SeqEntryAsnOut':
seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL;
^
seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqmgr.c:65:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
seqmgr.c: In function 'SeqMgrGetNextDescriptor':
seqmgr.c:9580:71: warning: 'bssp' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (omdp->datatype == OBJ_BIOSEQSET && bssp != NULL && bssp->seqentry != NULL) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c
objmgr.c: In function 'ObjMgrSelectFunc2':
objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
objmgr.c: In function 'ObjMgrAlsoSelect':
objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqLocChangeIntervalle ((SeqLocPtr)ssp->region, (Int4)(SeqLocStart(region)), -1);
^
objmgr.c:4030:22: note: 'ssp' was declared here
SelStructPtr ssp, next;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c
gather.c: In function 'AttachDataProc':
gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable]
Boolean no_good = FALSE, into_seqentry = FALSE;
^
gather.c: In function 'GatherSeqFeat':
gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wmaybe-uninitialized]
tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
^
gather.c:1530:86: warning: 'max_interval' may be used uninitialized in this function [-Wmaybe-uninitialized]
lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
^
gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
^
gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemCopy(lrdp, trdp, (size_t)(max_interval * sizeof(GatherRange)));
^
gather.c: In function 'gather_align_data':
gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wmaybe-uninitialized]
c_start = SeqLocStart(master_loc);
^
gather.c:2278:11: warning: 'h_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/
^
gather.c:2278:12: warning: 'h_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/
^
gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wmaybe-uninitialized]
t_range.right = t_range.left+len * mag_val -1;
^
gather.c: In function 'GatherBioseqFunc':
gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlen -= seglen;
^
gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (trunc_r)
^
gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (trunc_l)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c
codon.c: In function 'make_cds_paragraph':
codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable]
Int4 space_len, i;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c
jzcoll.c: In function 'load_default_matrix':
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
^
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
^
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c: In function 'GetUseThisGi':
jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable]
Boolean retval=FALSE;
^
jzcoll.c: In function 'buffer_for_feature':
jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable]
Int2 i=0;
^
jzcoll.c: In function 'ProcessTextInsertion':
jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable]
Int4 last_ins;
^
jzcoll.c: In function 'satcollfunc':
jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable]
SeqLocPtr head;
^
jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable]
Int4 current_pos;
^
jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp = NULL;
^
jzcoll.c: In function 'collect_anpnode_with_option':
jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable]
ValNodePtr prev = NULL;
^
jzcoll.c: In function 'ck_seqfeat_extra':
jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable]
Boolean has_gb = FALSE, has_med = FALSE;
^
jzcoll.c: In function 'load_open_close_sts_mark':
jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable]
Boolean collected = FALSE;
^
jzcoll.c: In function 'FeatNodeCompProc':
jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable]
GatherRange gr1, gr2;
^
jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable]
GatherRange gr1, gr2;
^
jzcoll.c: At top level:
jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function]
static Boolean collect_sequence_label(Uint1 format)
^
jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function]
static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
^
jzcoll.c: In function 'load_text':
jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
stdaa_res = SeqMapTableConvert(smtp, m_res);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c
maputil.c: In function 'load_gene_list':
maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Uint1 val;
^
maputil.c: In function 'gmarkfunc':
maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable]
ValNodePtr syn = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c
macroapi.c: In function 'AdvancedStringCompare':
macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, init_target_match_len = 0, target_match_len = 0;
^
macroapi.c: In function 'RemoveGBQualMatch':
macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable]
Boolean rval = FALSE, does_match, do_remove;
^
macroapi.c: In function 'SetNameInPrimerList':
macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
PCRPrimerPtr pp, prev_pp = NULL;
^
macroapi.c: In function 'SetSeqInPrimerList':
macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
PCRPrimerPtr pp, prev_pp = NULL;
^
macroapi.c: In function 'GetCitListsForSeqEntry':
macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
Boolean okay;
^
macroapi.c: In function 'GetPubMLStatus':
macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
CitSubPtr csp;
^
macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat':
macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat':
macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat':
macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'FindPosBeforeFeat':
macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable]
SeqFeatPtr regulator = NULL, candidate;
^
macroapi.c: In function 'PerformAutofixInSeqEntry':
macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable]
Int4 num_created = 0;
^
macroapi.c: In function 'AddFileDescriptors':
macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (sdp = SeqDescAsnRead (aip, NULL)) {
^
macroapi.c: In function 'PreprocessAddDescriptorListMacro':
macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (sdp = SeqDescAsnRead (aip, NULL)) {
^
macroapi.c: In function 'SummarizeRemoveOutsideAction':
macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable]
CharPtr case_insensitive = " (case insensitive)";
^
macroapi.c: In function 'GetObjectTableForTabTable':
macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable]
ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
^
macroapi.c: In function 'CheckObjTableForExistingText':
macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
macroapi.c: In function 'FixSuspectProductNamesInEntrezGene':
macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
CharPtr prefix = NULL;
^
macroapi.c: At top level:
macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function]
static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
^
macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function]
static Int4 OriginFromOriginName (CharPtr origin_name)
^
macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function]
static void TestAdvancedStringMatch (void)
^
macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function]
static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
^
macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function]
static Boolean HasMultiplePrimerSets (CharPtr value)
^
macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function]
static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
^
macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function]
static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
^
macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function]
static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
^
macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function]
static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
^
macroapi.c: In function 'GetFeatureListForProteinBioseq':
macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (sfp != NULL)
^
macroapi.c: In function 'ConvertToBond':
macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsp = GetBioseqGivenSeqLoc (slp, sfp->idx.entityID);
^
macroapi.c: In function 'ConvertToSite':
macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsp = GetBioseqGivenSeqLoc (slp, sfp->idx.entityID);
^
macroapi.c: In function 'SetAuthorListFromString':
macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
name_list = FreeNameList (1, vnp);
^
macroapi.c: In function 'CaptureRefBlockSerialNumbers':
macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp->data.ptrvalue = ppr;
^
macroapi.c: In function 'SetFieldValueForObjectEx':
macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_ipp[i] = ipp[i];
^
macroapi.c:13352:21: note: 'ipp' was declared here
Int4Ptr ipp, new_ipp;
^
macroapi.c:13378:29: warning: 'cpp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_cpp[i] = cpp[i];
^
macroapi.c:13350:21: note: 'cpp' was declared here
CharPtr PNTR cpp;
^
macroapi.c: In function 'SetDBxrefForBioSource':
macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (dbtag->tag == NULL)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c
salpedit.c: In function 'SeqAlignInsert':
salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
StdSegPtr ssp;
^
salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
salpedit.c: At top level:
salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function]
static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
^
salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function]
static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
^
salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function]
static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
^
salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function]
static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
^
salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function]
static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
^
salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function]
static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
^
salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function]
static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
^
salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function]
static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
^
salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function]
static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
^
salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function]
static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
^
salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function]
static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
^
salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
static void SeqAnnotWrite(SeqAlignPtr align)
^
salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function]
static SeqAnnotPtr open_annot(CharPtr f_name)
^
salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function]
static Int4 get_align_list_len(SeqAlignPtr align)
^
salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function]
static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
^
salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function]
static void reverse_seqloc (SeqLocPtr s_loc)
^
salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function]
static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
^
salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function]
static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
^
salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function]
static Boolean second_seq_has_gap(BioseqPtr s_bsp)
^
salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function]
static SeqIdPtr get_best_id(BioseqPtr bsp)
^
salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function]
static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c
salpstat.c: In function 'DenseSegStats':
salpstat.c:310:10: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
^
salpstat.c: In function 'SeqAlignScoreFix':
salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wmaybe-uninitialized]
sp_last->next = (ScorePtr) MemNew(sizeof(Score));
^
salpstat.c: In function 'DenseSegStats':
salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqPortFree(spp_2);
^
salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqPortFree(spp_1);
^
salpstat.c: In function 'SeqAlignWindowScoreFN':
salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized]
residue_score[pos]=score;
^
salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
qgaps_score[last_pos]=-(g_open+len*g_ext);
^
salpstat.c: In function 'SeqAlignWindowScore':
salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
FloatHiPtr scoreptr;
^
salpstat.c: In function 'SeqAlignSameIdMerge':
salpstat.c:2291:33: warning: 'salp_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp_prev->next = SeqAlignNew();
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c
salpacc.c: In function 'SeqAlignStrand':
salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable]
Uint1Ptr this_strand=Seq_strand_unknown;
^
salpacc.c: In function 'SeqAlignStop':
salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(this_stop!=-1)
^
salpacc.c: In function 'SeqAlignMolType':
salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (bsp!=NULL) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c
salprop.c: In function 'CopySeqLocFromSeqAlign':
salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
Boolean check_gap;
^
salprop.c: In function 'FeatListToProp':
salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable]
Uint4 feat_itemID;
^
In file included from salprop.c:42:0:
salprop.c: At top level:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
static CharPtr GBFeat[number_GBFeat] = {
^
In file included from ../include/sqnutils.h:51:0,
from salprop.c:46:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salprop.c: In function 'ApplyNewSeqFeat':
salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
j = stop - SeqLocStop(sfp_location);
^
salprop.c:514:17: note: 'stop' was declared here
stop,
^
salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
crp = (CdRegionPtr) (sfp->data.value.ptrvalue);
^
salprop.c:674:17: note: 'sfp' was declared here
SeqFeatPtr sfp;
^
salprop.c:733:24: warning: 'ppp.p5' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!sfp_p5 && ppp.p5)
^
salprop.c:679:17: note: 'ppp.p5' was declared here
ParTials ppp;
^
salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wmaybe-uninitialized]
SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
^
salprop.c:679:17: note: 'ppp.p3' was declared here
ParTials ppp;
^
salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
^
salprop.c: In function 'MergeFunc':
salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wmaybe-uninitialized]
target_slp=SeqLocIntNew (from_overlapp, to_overlapp, Seq_strand_plus, target_id);
^
salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c
salsap.c: In function 'DenseDiagToDenseSegFunc':
salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable]
slpstop1 = 0, slpstop2 = 0;
^
salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable]
slpstop1 = 0, slpstop2 = 0;
^
salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable]
Int4 slpstart1 = 0, slpstart2 = 0,
^
salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable]
Int4 slpstart1 = 0, slpstart2 = 0,
^
salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start1 = 0, start2 = 0,
^
salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1 = 0, start2 = 0,
^
In file included from ../include/sqnutils.h:51:0,
from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function]
static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
^
salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function]
static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
^
salsap.c: In function 'SeqAlignEndExtend':
salsap.c:986:18: warning: 'n_strands' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr n_strands;
^
salsap.c: In function 'CleanStrandsSeqAlign':
salsap.c:1614:15: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 dim;
^
salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
^
salsap.c:1611:15: warning: 'startp' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr startp;
^
salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp=lenp[j];
^
salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wmaybe-uninitialized]
csp->strands = NULL;
^
salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->strands = NULL;
^
salsap.c: In function 'LocalAlignToSeqAnnotDimn':
salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wmaybe-uninitialized]
while ( j < lens )
^
salsap.c: In function 'multseqalign_from_pairseqalign':
salsap.c:4394:19: warning: 'strandp' may be used uninitialized in this function [-Wmaybe-uninitialized]
strandp++;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c
salstruc.c: In function 'data_collect_arrange':
salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable]
Int4 maxscroll;
^
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
Uint2 entityID, itemtype;
^
In file included from ../include/sqnutils.h:51:0,
from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from salstruc.c:41:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salstruc.c: In function 'prot_to_rputprot':
salstruc.c:739:6: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (k=0; k<j && *strp != '\0'; strp++, k++)
^
salstruc.c: In function 'data_collect_arrange':
salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID,
^
salstruc.c:872:19: note: 'entityID' was declared here
Uint2 entityID;
^
salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
seq_info->entityID=entityID;
^
salstruc.c:1005:17: note: 'entityID' was declared here
Uint2 entityID;
^
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqIdPtr bspsip;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c
salutil.c: In function 'ReadBufferFromSap':
salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable]
Int4 bufflen, buffstart;
^
salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable]
Int4 sumstart;
^
salutil.c: In function 'IS_protSeqLoc':
salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable]
CharPtr seq;
^
salutil.c: In function 'ReplaceSeqIdWithSeqId':
salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
SeqEntryPtr oldscope;
^
salutil.c: In function 'del_ssp_fromid':
salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable]
SelEdStructPtr ssp, pressp = NULL;
^
salutil.c: In function 'checkCDSselect_forprotein':
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (feat != NULL)
^
salutil.c: In function 'NoMoreSegGapForOneAlignment':
salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration]
AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
^
In file included from ../include/sqnutils.h:51:0,
from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salutil.c: In function 'sesp_to_slp':
salutil.c:1927:18: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 j,k;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c
udvseq.c: In function 'UDV_EncodeIdxFeat':
udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Int4Ptr) index_g);
^
udvseq.c: In function 'UDV_BigEncodeIdxFeat':
udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c
blocks.c: In function 'IndexBlocks':
blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
segp_align->to = segp_align->to = -1;
^
blocks.c: In function 'IndexNewBlocks':
blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
segp_align->to = segp_align->to = -1;
^
blocks.c: In function 'GetBlockOrientation':
blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wmaybe-uninitialized]
return orient;
^
blocks.c: In function 'SAMergeBlocks':
blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp2 = tmp2->next;
^
blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
merged->segp_head = tmp_head;
^
blocks.c:1470:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp1->prev = tmp_curr;
^
blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp1->prev = prev;
^
blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_sabp1->segp_head = tmp_head;
^
blocks.c: In function 'SASplitBlock':
blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
segp2->prev = segp2_prev;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 0xffffff - */
^
pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
pgppop.c: In function 'DDV_WWW_get_CDS_minus':
pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
numivals2=0;
^
pgppop.c: In function 'DDV_WWW_get_CDS_plus':
pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
pgppop.c: In function 'GetClrFromClrGlobal':
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
if (*((Uint4Ptr)rgb1 )== *((Uint4Ptr)rgb2)){
^
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c: In function 'DDV_DisplayTopScale':
pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable]
Char szBlank[TABLE_LEFT_MARGIN+5]={""};
^
pgppop.c: In function 'DDV_GetBLASTCompLine_1':
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
if (matrix[s][q]>0){
^
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c: In function 'DDV_DisplayDefaultAlign':
pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable]
SABlockPtr sabp=NULL;/*indexed SeqAlign*/
^
pgppop.c: In function 'DDV_ShowSeqAlign':
pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable]
Char szPopSetAuth[INFO_SIZE+1]={""};
^
pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable]
Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
^
pgppop.c: In function 'DDV_PrintPopSetSummary':
pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable]
Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
^
In file included from ../include/sqnutils.h:51:0,
from pgppop.c:298:
pgppop.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/asn2ff6.h:142:0,
from pgppop.c:300:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from pgppop.c:303:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function]
static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
^
pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function]
static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
^
pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function]
static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
^
pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function]
static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
^
pgppop.c: In function 'DDV_PopDisplay2':
pgppop.c:1246:40: warning: 'pgp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (pgp2 && ((pgp2->StopLetter-pgp2->StartLetter+1)>=AbsLengthAli)) {
^
pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp->next=NULL;
^
pgppop.c: In function 'DDV_Print_Sequence':
pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wmaybe-uninitialized]
StringCpy(szColor,DDV_PaletteRGB_NAV[idx]);
^
pgppop.c:1308:9: note: 'idx' was declared here
Uint4 i,idx;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c
samutil.c: In function 'DDE_FreeStack':
samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point]
Index = ++Index % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Add':
samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point]
pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
^
samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Prev':
samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Next':
samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_ShowRow':
samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable]
Int4 i, NumRows, HiRow, LowRow, tmp1, tmp2;
^
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr ptxtList, last_vnp, vnp;
^
samutil.c: In function 'DDE_RightAddNode':
samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, next_vnp, new_vnp;
^
samutil.c: In function 'DDE_LeftMergeAndAddNodeList':
samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
Boolean RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
^
samutil.c: In function 'DDE_RightMergeAndAddNodeList':
samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
Boolean RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
^
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable]
Int4 NumBlocks, i, NumRows, Index, BlockCount=0;
^
samutil.c: In function 'DDE_CreateArraysForDenseSeg':
samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable]
Int4 NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
^
samutil.c: In function 'DDE_GetLastVNP':
samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return(last_vnp);
^
samutil.c: In function 'DDE_GetNumResidues':
samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wmaybe-uninitialized]
return((to-from) + 1);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
ddvcolor.c: In function 'DDV_GetColor':
ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
In file included from ../include/samutil.h:234:0,
from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from viewmgr.c:168:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function]
static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 0xffffff - */
^
ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1':
ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
^
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2':
ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable]
Boolean more;
^
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2':
ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
^
ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Boolean last;
^
ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable]
Int4 PopulateTo;
^
ddvcreate.c: In function 'DDV_DisplayNewBLAST':
ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable]
Uint1 what;
^
ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4':
ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ddvcreate.c:249:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function]
static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
^
ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function]
static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
^
ddvcreate.c: In function 'UAMgrIntUAMsg':
ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
ubd->from=Start;
^
ddvcreate.c:1158:73: note: 'stop_middle' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
^
ddvcreate.c:1158:60: note: 'start_middle' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wmaybe-uninitialized]
UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
^
ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wmaybe-uninitialized]
ubd->from=Start;
^
ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c: In function 'DDV_PopulateDisplayForDisc':
ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp_list[n-1]=vnp_para;
^
ddvcreate.c: In function 'UABuildDescriptor2':
ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
^
ddvcreate.c: In function 'DDV_DumpSAPInAFile':
ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
^
ddvcreate.c: In function 'DDV_ReadSeqBin':
ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr btr;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c
needleman.c: In function 'NeedlemanWunschQuadraticByLoc':
needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable]
Int4 bestQueryPos, bestDbPos; /*position ending best score in
^
needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable]
Int4 bestQueryPos, bestDbPos; /*position ending best score in
^
needleman.c: In function 'FetchSequenceByLoc':
needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1 * query;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c
txalign.c: In function 'addLinkoutForDefline':
txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
Boolean hasLinkout=FALSE;
^
txalign.c: In function 'addLinkoutForBioseq':
txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
Boolean hasLinkout=FALSE;
^
txalign.c: In function 'load_align_sum_for_StdSeg':
txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
^
txalign.c: In function 'ShowAlignNodeText2Ex':
txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable]
Boolean is_end, strip_semicolon=TRUE;
^
txalign.c: In function 'Tx_PrintDefLine':
txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable]
Int4 seqid_length = 0, total_length = 0;
^
txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath':
txalign.c:5012:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
^
txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (bsp = BioseqLockById(bestid)) {
^
txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable]
Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
^
txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable]
SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
^
txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable]
Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
^
txalign.c: In function 'FormatScoreFromSeqAlignEx':
txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable]
Int4 m_adj = 0, t_adj = 0;
^
txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable]
Int4 last_m_to = 0, last_t_to = 0;
^
txalign.c: In function 'FSFPrintOneDefline':
txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable]
Int4 gi, seqid_len = 0;
^
txalign.c: In function 'FormatScoreFunc':
txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable]
Boolean allocated, first;
^
txalign.c: In function 'OOFShowSingleAlignment':
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
else if(matrix[line1[line_index]][line2[line_index]] > 0)
^
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
Int4 i, lines, k, shift_info = 0;
^
txalign.c: In function 'OOFDisplayTraceBack1':
txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c: In function 'OOFDisplayTraceBack2':
txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c: In function 'FDGetTaxNamesFromBioseq':
txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable]
BlastDefLinePtr bdsp;
^
txalign.c: At top level:
txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function]
static CharPtr getNameInitials(CharPtr name){
^
txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function]
static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
^
txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function]
static Boolean has_hit_in_region(Uint1Ptr all_frame)
^
txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function]
get_seq_id(SeqAlignPtr sap, Int2 index)
^
txalign.c: In function 'DrawTextToBuffer':
txalign.c:1806:53: warning: 'HTML_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
snprintf(docbuf+pos, size-pos, "%s",
^
txalign.c: In function 'CreateMaskByteStore':
txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(mol == Seq_mol_aa)
^
txalign.c:988:8: note: 'mol' was declared here
Uint1 mol;
^
txalign.c: In function 'OOFShowSingleAlignment.isra.9':
txalign.c:6049:16: warning: 'pro_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
number = number/10;
^
txalign.c:6089:48: note: 'pro_line_start' was declared here
Int4 dna_index, pro_index, dna_line_start, pro_line_start;
^
txalign.c:6049:16: warning: 'dna_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
number = number/10;
^
txalign.c:6089:32: note: 'dna_line_start' was declared here
Int4 dna_index, pro_index, dna_line_start, pro_line_start;
^
txalign.c: In function 'find_score_in_align':
txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
stdaa_res = SeqMapTableConvert(smtp, t_res);
^
txalign.c:2498:20: note: 'smtp' was declared here
SeqMapTablePtr smtp;
^
txalign.c:2459:31: warning: 't_spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(m_spp == NULL || t_spp == NULL) {
^
txalign.c:2394:23: note: 't_spp' was declared here
SeqPortPtr m_spp, t_spp;
^
txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(m_spp == NULL || t_spp == NULL) {
^
txalign.c:2394:16: note: 'm_spp' was declared here
SeqPortPtr m_spp, t_spp;
^
txalign.c: In function 'ShowAlignNodeText2Ex.isra.10':
txalign.c:2284:25: warning: 'm_len' may be used uninitialized in this function [-Wmaybe-uninitialized]
to = MIN(master_len-1, to + 3);
^
txalign.c:3543:10: note: 'm_len' was declared here
Int4 m_len; /*length of the master sequence*/
^
txalign.c: In function 'ShowTextAlignFromAnnot3':
txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean retval, matrix_loaded=FALSE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c
fdlobj.c: In function 'BlastDefLineSetAsnRead':
fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
fdlobj.c: In function 'BlastDefLineAsnRead':
fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA':
alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value]
for (j; j<dsp->numseg && next == -1; j++)
^
alignmgr2.c: In function 'AlnMgr2CopySeg':
alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (ldelta = ABS(s->beg - beg)) {
^
alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA':
alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (a = AlnMgr2GetNextSeqPiece(a)) {
^
alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
^
alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (A = AlnMgr2GetNextSeqPiece(A)) {
^
alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
^
alignmgr2.c: In function 'AlnMgr2SetUnaln':
alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2PrintSeqAlign':
alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgr2GetNextAlnBit(sap, amp))
^
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable]
SAIndex2Ptr saip;
^
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value]
for (i; i<interrupt->segnum; i++)
^
alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign':
alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable]
Int4 numseqs;
^
alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable]
Int4 mismatch;
^
alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from alignmgr2.c:232:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function]
static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
^
alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function]
static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
^
alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function]
static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
^
alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function]
static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
^
alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc':
alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqLocPtr slp_longest;
^
alignmgr2.c: In function 'AlnMgr2IndexLite':
alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
^
alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here
SeqAlignPtr sap_segs_prev;
^
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6095:54: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
^
alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength':
alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
SAIndex2Ptr saip;
^
alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (i=0; i<dsp->dim; i++)
^
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wmaybe-uninitialized]
iip->strand = strand;
^
alignmgr2.c:6177:15: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
srdp = saip->srdp[interrupt->row-1];
^
alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
iip->lens[k] += dsp->lens[i];
^
alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA':
alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (n > saip->numrows || n <= 0)
^
alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1];
^
alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA':
alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (n > saip->numrows || n <= 0)
^
alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
^
alignmgr2.c: In function 'AlnMgr2GetAlnLength':
alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
len += AlnMgr2GetMaxUnalignedLength(salp, i);
^
alignmgr2.c:6759:15: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->anchor == -1)
^
alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (i=0; i<dsp->numseg; i++)
^
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_sect = binary_search_on_uint4_list(saip->aligncoords, amp->real_from, saip->numseg);
^
alignmgr2.c:5978:19: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
endoffset = dsp->lens[trans[stop_sect]] - (amp->to_aln - saip->aligncoords[stop_sect]) - 1;
^
alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli':
alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->numunaln > 0)
^
alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks':
alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->numunaln >= 0)
^
alignmgr2.c: In function 'AlnMgr2GetNthBlockRange':
alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = saip->aligncoords[saip->unaln[n-1]+1];
^
alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow':
alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
i = binary_search_on_uint2_list(saip->srdp[row-1]->unaligned, seg, saip->srdp[row-1]->numunaln);
^
alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])];
^
alignmgr2.c: In function 'AlnMgr2GetNextLengthBit':
alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (*seg < saip->numunaln)
^
alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange':
alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
^
alignmgr2.c:6021:13: warning: 'aligncoords' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (list == NULL || listlen == 0)
^
alignmgr2.c:7133:21: note: 'aligncoords' was declared here
Uint4Ptr aligncoords;
^
alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign':
alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (row > saip->numrows)
^
alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq':
alignmgr2.c:7700:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->anchor > 0)
^
alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset);
^
alignmgr2.c: In function 'AlnMgr2GetSubAlign':
alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((a = AlnMgr2FindAnchor(sap_real)) > 0)
^
alignmgr2.c: In function 'AlnMgr2FillInUnaligned':
alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr = curr + 1 + offset;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function 'DoesSeqStringMatchBsp':
acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
Int4 ctr, pos = 0, i, len, seq_len;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function]
static int s_IsGapChar (char ch, char *gap_chars)
^
aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function]
static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
^
aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function]
static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
^
aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function]
static int s_GetUngappedPosition (int gapped_pos, char *seq)
^
aceread.c: In function 's_ReadContig':
aceread.c:1477:12: warning: 'linestring' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (linestring != NULL) free (linestring);
^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c
cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function]
static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
^
cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function]
static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
^
cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function]
static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
^
cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable]
static AsnTypePtr BIOSEQ_id_E = NULL;
^
cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function]
static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
^
cdentrez.c: In function 'CdEntrezMergeTerm':
cdentrez.c:2675:17: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized]
*totl = total;
^
cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wmaybe-uninitialized]
*spcl = special;
^
cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wmaybe-uninitialized]
cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
^
cdentrez.c: In function 'CdLinkUidList':
cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized]
return count;
^
cdentrez.c: In function 'CdTermListByTerm':
cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wmaybe-uninitialized]
rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
^
cdentrez.c: In function 'CdEntTLAddTerm':
cdentrez.c:1895:24: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (scanOk && total > 0) {
^
cdentrez.c:1787:13: note: 'total' was declared here
Int4 total;
^
cdentrez.c: In function 'CdEntrezFindTerm':
cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*spcl = ctp->special_count;
^
cdentrez.c: In function 'CdEntMedlineEntryListGet':
cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
mep = MedlineEntryAsnRead(aip, NULL);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces]
"", 0, 0,
^
cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces]
cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces]
SYS_KEYNAME, SYS_DIRNAME, NULL, NULL,
^
cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces]
cdnewlib.c: In function 'cd3_CdDocAsnOpen':
cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable]
char *fdir = NULL;
^
cdnewlib.c: In function 'CdDevice_Init':
cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable]
int cd_num;
^
cdnewlib.c: At top level:
cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function]
static int Cache_Delete (Cache *cache, long id)
^
cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function]
static int Cache_Touch (Cache *cache, long id)
^
cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function]
static void* Cache_Peek (Cache *cache, long id)
^
cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function]
static void Cache_Purge (Cache *cache)
^
cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable]
static char * _empty_string = "";
^
cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable]
static DivInfo * _div;
^
cdnewlib.c: In function 'UnixFileGets':
cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ch == '\0') {
^
cdnewlib.c: In function 'trmncmp':
cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (c1 - c2);
^
cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wmaybe-uninitialized]
cdnewlib.c: In function 'TrmIndex_Lookup':
cdnewlib.c:2136:24: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized]
int lo, hi, mid, len, d;
^
cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (d==0 && len == (int)strlen(term))
^
cdnewlib.c: In function 'UidIndex_Lookup':
cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
page_num = (uid < *p && mid >0) ? mid-1 : mid;
^
cdnewlib.c:1986:42: warning: 'mid' may be used uninitialized in this function [-Wmaybe-uninitialized]
page_num = (uid < *p && mid >0) ? mid-1 : mid;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from ../include/ncbi.h:58:0,
from cdconfig.c:75:
cdconfig.c: In function 'ChangeMedia':
../include/ncbistd.h:278:15: warning: statement with no effect [-Wunused-value]
#define FALSE ((Nlm_Boolean)0)
^
../include/ncbifile.h:169:76: note: in expansion of macro 'FALSE'
#define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd) FALSE
^
cdconfig.c:941:29: note: in expansion of macro 'EjectCd'
EjectCd(toBeEjected->entrez_info->volume_label,
^
../include/ncbistd.h:278:15: warning: statement with no effect [-Wunused-value]
#define FALSE ((Nlm_Boolean)0)
^
../include/ncbifile.h:170:76: note: in expansion of macro 'FALSE'
#define MountCd(sVolume, deviceName, mountPoint, mountCmd) FALSE
^
cdconfig.c:960:17: note: in expansion of macro 'MountCd'
MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
^
cdconfig.c: At top level:
cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function]
static void UnMarkLRUineligible PROTO((void));
^
cdconfig.c: In function 'EntrezInfoMerge':
cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wmaybe-uninitialized]
new->types[i].num_bucket = besttype->num_bucket;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c
objentr.c: In function 'DocSumAsnRead':
objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentr.c: At top level:
objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function]
static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
^
objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function]
static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
^
objentr.c: In function 'EntrezInfoAsnRead':
objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (div == NULL)
^
objentr.c:241:17: note: 'div' was declared here
EntrezDivInfo *div;
^
objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
link->datasize = (int) val.intvalue;
^
objentr.c:240:18: note: 'link' was declared here
EntrezLinkInfo *link;
^
objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wmaybe-uninitialized]
fld->post_type = (PostType) val.intvalue;
^
objentr.c:239:19: note: 'fld' was declared here
EntrezFieldInfo *fld;
^
objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wmaybe-uninitialized]
tinf->asntype = (char*) val.ptrvalue;
^
objentr.c:238:18: note: 'tinf' was declared here
EntrezTypeInfo *tinf;
^
objentr.c:856:14: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
div->docs[i++] = val.intvalue;
^
objentr.c:824:7: note: 'i' was declared here
int i;
^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Nlm_Int2 val;
^
vibbutns.c: In function 'Nlm_NewButton.isra.1':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wmaybe-uninitialized]
XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
Nlm_Boolean is_realized;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
Nlm_MenU m;
^
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
Nlm_Char accel;
^
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
Widget lbl;
^
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
Pixel color;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNbackground, &color, 0);
^
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
^
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
int screen_num;
^
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
Nlm_Int2 retval;
^
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
main (int argc, char *argv[])
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
Int4 curScale;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF document.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF table.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF image.c
image.c: In function 'ShiftXMask':
image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
if(!((mask >> hi + low) & (unsigned long)1)) break;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
Bool waited = False;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable]
GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
^
shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
Boolean IsGoUp=FALSE;
^
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Nlm_Int2 val;
^
vibbutns.c: In function 'Nlm_NewButton.isra.1':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wmaybe-uninitialized]
XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
^
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
Nlm_Boolean is_realized;
^
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
Nlm_MenU m;
^
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
Nlm_Char accel;
^
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
Widget lbl;
^
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
Pixel color;
^
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNbackground, &color, 0);
^
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_Set3DColorMap':
vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable]
Boolean testvisual;
^
vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
^
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
int screen_num;
^
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
Nlm_Int2 retval;
^
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: At top level:
vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function]
static Boolean Nlm_StandardColormap(Colormap *cMap,
^
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
main (int argc, char *argv[])
^
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
Int4 curScale;
^
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
image.c: In function 'ShiftXMask':
image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
if(!((mask >> hi + low) & (unsigned long)1)) break;
^
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
Bool waited = False;
^
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function 'OGL_AddCylinder3D':
shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable]
Nlm_Int4 iCount;
^
shim3d.c: In function 'OGL_AddText3D':
shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable]
Nlm_Int4 Length, i;
^
shim3d.c: In function 'OGL_Zoom_DragMA':
shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable]
TOGL_Data *OGL_Data = MAToOGL(ma);
^
shim3d.c: In function 'OGL_Hit':
shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default]
ZMinName = ZMinName << (sizeof(GLuint) * 8);
^
shim3d.c: In function 'write_row_callback':
shim3d.c:2899:15: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
float start, end;
^
shim3d.c:2899:22: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
float start, end;
^
shim3d.c: In function 'SetOGLFont':
shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
^
shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ii == 0 || diff < mindiff) {
^
shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wmaybe-uninitialized]
char query[256], **list, *pos;
^
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wmaybe-uninitialized]
glNormal3d(Nx[k], Ny[k], Nz[k]);
^
shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wmaybe-uninitialized]
glNormal3d(Nx[k], Ny[k], Nz[k]);
^
shim3d.c:3454:26: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
Nlm_Int4 i, j, k, m, offset;
^
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
Boolean IsGoUp=FALSE;
^
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c
accentr.c: In function 'EntrezBiostrucGet':
accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable]
BiostrucPtr retval = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c
drawseq.c: In function 'AddFlatNodeSymbol':
drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable]
Int4 symbol_height = 8;
^
drawseq.c: In function 'AddAlignBlocks':
drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable]
Int2 c_num;
^
drawseq.c: In function 'AddAlignFeature':
drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable]
Uint1 ptype = 0;
^
drawseq.c: In function 'AddAlignmentMismatch':
drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable]
Int4 i_right;
^
drawseq.c: In function 'DrawRestrictionMap':
drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable]
Boolean retval = FALSE;
^
drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable]
Int4 x1, x2, center;
^
drawseq.c: In function 'DrawFeatures':
drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Int2 entityID;
^
drawseq.c: In function 'DrawOneSeqLoc':
drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable]
Boolean show_seq_label = TRUE; /*show the label of a sequence*/
^
drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable]
Boolean ends;
^
drawseq.c: In function 'Label_GData':
drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable]
Boolean success = FALSE;
^
drawseq.c: In function 'DrawEquivAlign':
drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable]
Uint1 my_gray_color[]={63, 63, 63};
^
drawseq.c: In function 'load_align_label_rectangle':
drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable]
Boolean found_it;
^
drawseq.c: In function 'PicForAlignNode':
drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable]
Int4 max_width, min_scale;
^
drawseq.c: At top level:
drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function]
static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
^
drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function]
static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c
smdlg2.c: In function 'Nlm_CreateDlgGroup':
smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable]
Handle toAlign[3];
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c
glbpic.c: In function 'label_linear_mark':
glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable]
Int4 tick_len = TICK_LEN;
^
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable]
Uint1 p_val;
^
glbpic.c: At top level:
glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function]
static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
^
glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function]
static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
^
glbpic.c: In function 'get_circle_label_align':
glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wmaybe-uninitialized]
return align;
^
glbpic.c: In function 'label_circle_mark':
glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(label_align != first_align)
^
glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(label_align != p_align)
^
glbpic.c:2483:26: warning: 'first_left' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(ABS(first_left - left) < (t_width +3))
^
glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wmaybe-uninitialized]
t_width = (first_width + width)/2;
^
glbpic.c:2473:24: warning: 'first_top' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(ABS(first_top - top )< (font_height+3))
^
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddTextLabel(seg, (left+right)/2, g_top, annotDB, font, 0, MIDDLE_CENTER, 0);
^
glbpic.c: In function 'Draw_Global':
glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wmaybe-uninitialized]
m_stop += seglen;
^
glbpic.c:1943:8: note: 'seglen' was declared here
Int4 seglen;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c
layout.c: In function 'LayoutNodeFlat':
layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, next, prev;
^
layout.c: In function 'layout_uncompressed_group':
layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable]
Int2 group_start, group_stop;
^
layout.c: In function 'LayoutFeatNode':
layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable]
Int4 cur_line, y_next;
^
layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable]
Int4 segstyle, labelstyle;
^
layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable]
Boolean show_trunc = FALSE;
^
layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable]
Int2 i, k;
^
layout.c: In function 'LayoutAlignNode':
layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable]
Int4 num = 0;
^
layout.c: At top level:
layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function]
static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
^
layout.c: In function 'layout_uncompressed_group':
layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_feattype = c_fnp->feattype;
^
layout.c: In function 'GroupFeatNode':
layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev->next = new;
^
layout.c:594:35: note: 'prev' was declared here
ValNodePtr my_node = NULL, curr, prev, next;
^
layout.c: In function 'OrderCdsmRNA':
layout.c:963:9: warning: 'm_missed' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(missed < m_missed)
^
layout.c:940:15: note: 'm_missed' was declared here
Int2 missed, m_missed; /*number of exons missed at both end*/
^
layout.c: In function 'LayoutFeatNode':
layout.c:1503:12: warning: 'p_right' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_right = MAX(right, p_right);
^
layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_left = MIN(left, p_left);
^
layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
fnp->bottom = height;
^
layout.c: In function 'LayoutAlignNode':
layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 cur_line, next_line;
^
layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wmaybe-uninitialized]
while(vnp)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c
saldist.c: In function 'copy_string':
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
*from++;
^
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
*from++;
^
saldist.c: In function 'nss_ref_complength':
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'nss_pw_complength':
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'nss_gp_complength':
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'SortbySimProc':
saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable]
SeqAlignPtr newsalp, newsalpd;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable]
static Char *matrixlst [] = {"", "idmat",
^
saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function]
static Boolean new_matrice (Int2 simmatrix, CharPtr path)
^
saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function]
static Int2 AAcode(Char car)
^
saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function]
static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
^
saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function]
static Int4Ptr PNTR scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
^
saldist.c: In function 'writematrixhalf.constprop.9':
saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp=vnp->next;
^
saldist.c: In function 'PwDistProc':
saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp=vnp->next;
^
saldist.c:1104:19: note: 'vnp' was declared here
ValNodePtr vnp,
^
saldist.c: In function 'SortbyLenItem':
saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wmaybe-uninitialized]
sortlst [mink] = j + 1;
^
saldist.c:2172:28: note: 'mink' was declared here
Int2 j, k, mink;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c
saled.c: In function 'ReadAlignmentForSeqEntry':
saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable]
dirty = FALSE;
^
saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp=NULL,
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from saled.c:49:
saled.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from saled.c:55:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c
salfiles.c: In function 'NewFastaRead':
salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable]
SeqIdPtr segsip=NULL, lastsegsip=NULL;
^
salfiles.c: In function 'ReadAlignmentToStrings':
salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable]
Int2 nseq = 0;
^
salfiles.c: In function 'MacawRead':
salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable]
vnp = NULL;
^
salfiles.c: In function 'ReadLocalAlign':
salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable]
tmp1;
^
salfiles.c: In function 'ImportFromFile':
salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep = NULL;
^
salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable]
SeqAnnotPtr sap = NULL;
^
salfiles.c: In function 'sesp_to_pept':
salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable]
bufferPtr = NULL;
^
salfiles.c: In function 'SaveFeatProc':
salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salfiles.c: In function 'CCReadAnythingLoop':
salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function]
static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
^
In file included from ../include/sequtil.h:43:0,
from ../include/gather.h:166,
from ../include/saledit.h:52,
from ../include/salfiles.h:48,
from salfiles.c:44:
salfiles.c: In function 'CCDownloadProc':
../include/objsset.h:230:26: warning: 'new_sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define IS_Bioseq(a) ((a)->choice == 1)
^
salfiles.c:2286:15: note: 'new_sep' was declared here
SeqEntryPtr new_sep;
^
salfiles.c: In function 'NewFastaRead.constprop.16':
salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (sip!=NULL)
^
salfiles.c: In function 'GapFastaRead':
salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqstr [lgseq] = strp[j];
^
salfiles.c:654:16: note: 'seqstr' was declared here
seqstr;
^
salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!startp) {
^
salfiles.c:660:16: note: 'startp' was declared here
Boolean startp;
^
salfiles.c: In function 'ReadLocalAlignment':
salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap = LocalAlignToSeqAnnotDimn (seqvnp, seqid, NULL, n_seq, 0, NULL, FALSE);
^
salfiles.c:1113:19: note: 'seqvnp' was declared here
ValNodePtr vnp, seqvnp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c
salpanel.c: In function 'go_to_next_to_draw':
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
offsettmp;
^
salpanel.c: In function 'next_to_draw':
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if ( curstr != NULL )
^
salpanel.c: In function 'AssociatePropagatedSubloc':
salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
salpanel.c: In function 'FeaturePropagateForm':
salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
PrompT ppt;
^
salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
salpanel.c: In function 'OkToContinueWithFeatureApply':
salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable]
Int4 num_missing = 0, seq_num, start_num;
^
salpanel.c: In function 'DoApplyFeatureToAlignment':
salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable]
Boolean found_null = FALSE;
^
salpanel.c: In function 'ApplyFeatureToAlignment':
salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salpanel.c:52:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable]
static Uint1 diamondSym [] = {
^
salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable]
static Uint1 ovalSym [] = {
^
salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable]
static Uint1 upTriSym [] = {
^
salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable]
static Uint1 downTriSym [] = {
^
salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable]
static Uint1 diamondFillSym [] = {
^
salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable]
static Uint1 ovalFillSym [] = {
^
salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable]
static Uint1 upTriFillSym [] = {
^
salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable]
static Uint1 downTriFillSym [] = {
^
salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable]
static Uint1 rightOvalSym [] = {
^
salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable]
static Uint1 leftOvalSym [] = {
^
salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable]
static Uint1 rightOvalFillSym [] = {
^
salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable]
static Uint1 leftOvalFillSym [] = {
^
salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function]
static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
^
salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function]
static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
^
salpanel.c: In function 'draw_feat.isra.14':
salpanel.c:1939:17: warning: 'col1' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 col1;
^
salpanel.c: In function 'on_draw':
salpanel.c:2527:32: warning: 'draw_diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c
salparam.c: In function 'mergelst':
salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Boolean val;
^
salparam.c: In function 'unmergelst':
salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable]
DialogBoxDataPtr dbdp;
^
salparam.c: In function 'FormulaDialog':
salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3, b4, b5;
^
salparam.c: In function 'JK_NTPattern2Ex':
salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable]
CharPtr debug_str;
^
salparam.c: In function 'DotPlotBtn':
salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
salparam.c: In function 'DotPlotDialog':
salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable]
ButtoN bt1, bt2;
^
salparam.c: In function 'DotPlotItem':
salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
salparam.c: In function 'SelectSeqFunc':
salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable]
CharPtr str;
^
salparam.c: In function 'HighlightSelectionFunc':
salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable]
SeqEditViewFormPtr wdp;
^
salparam.c: In function 'PropagateFeatureProc':
salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable]
Uint2 eID, iID,
^
salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from salparam.c:58:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sequtil.h:43:0,
from ../include/gather.h:166,
from ../include/salsa.h:52,
from ../include/salparam.h:48,
from salparam.c:44:
salparam.c: In function 'DotPlotBtn':
../include/objsset.h:230:26: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define IS_Bioseq(a) ((a)->choice == 1)
^
salparam.c:1931:22: note: 'sep' was declared here
SeqEntryPtr sep;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c
salsa.c: In function 'SelectSubsProc':
salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable]
SeqEditViewProcsPtr svpp=NULL;
^
salsa.c: In function 'SetSeqInfo':
salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp = NULL;
^
salsa.c: In function 'SetupAlignDataSap':
salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable]
Uint2 entityID_sap;
^
salsa.c: In function 'get_bestpos_formerge':
salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable]
insert_after=FALSE;
^
salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable]
Boolean insert_before=FALSE,
^
salsa.c: In function 'CreateSeqAlignViewForm':
salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable]
ButtoN mergebtn;
^
salsa.c: In function 'AlgEditFunc':
salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable]
SeqEditViewFormPtr wdp = NULL;
^
salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable]
WindoW w = NULL;
^
salsa.c: In function 'OldAlignmentEditor':
salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Int2 rval;
^
salsa.c: In function 'LaunchAnnotAlignEditor':
salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignEditor':
salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignViewer':
salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop':
salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop2':
salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop3':
salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop4':
salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'InsertSeqProc':
salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable]
ButtoN insbt, cnclbt;
^
salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable]
PrompT insprt;
^
salsa.c: In function 'SeqAlignBestHit':
salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Int4 last;
^
salsa.c: In function 'SeqAlignStartUpdate':
salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable]
Int2 index, k, j;
^
salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable]
start;
^
salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable]
Int4 len_sum,
^
salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable]
Int4Ptr lenp,
^
salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable]
SeqIdPtr pre, sip, next;
^
salsa.c: In function 'CCNormalizeSeqAlignId':
salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable]
Int4 gi = 0;
^
salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable]
CharPtr missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
^
salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable]
CharPtr missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
^
salsa.c: In function 'ValidateSeqAlignandACCEx':
salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
MsgAnswer ans;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from salsa.c:52:0:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
static CharPtr GBFeat[number_GBFeat] = {
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salsa.c:68:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function]
static void InsertSequenceDlg (ButtoN b);
^
salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function]
static void AcceptCloseWindowButton (ButtoN b)
^
salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function]
static void MakeCdRgnProc (IteM i) {
^
salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function]
static void MakeCdRgnrProc (IteM i) {
^
salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function]
static Boolean DeltaLitOnly (BioseqPtr bsp)
^
salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function]
static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
^
salsa.c: In function 'ExportFASTAForUnselectedUpdates':
salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
FileClose (fp);
^
salsa.c: In function 'ExportBadAlignments':
salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
FileClose (fp);
^
salsa.c: In function 'SeqAlignBestHit.isra.12':
salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*nonly = nctr+beg+end;
^
salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
*nonly = -(beg+end);
^
salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wmaybe-uninitialized]
salsa.c: In function 'BioseqEditMsgFunc':
salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wmaybe-uninitialized]
ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
^
salsa.c:890:20: note: 'anp' was declared here
AlignNodePtr anp;
^
salsa.c: In function 'DeleteProc':
salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
newsalp = (SeqAlignPtr)sap->data;
^
salsa.c: In function 'SkipThisWindowProc':
salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
LaunchAlignViewer(salp);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c
seqfltr.c: In function 'FilterSeq':
seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
sgp->values = (Pointer) fptr;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c
seqgraph.c: In function 'EndPointDialogToEndPointValNode':
seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (Pointer) eplist;
^
seqgraph.c: In function 'SeqLocGraphViewProc':
seqgraph.c:1138:41: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
StrCpy (buff, (CharPtr) eplist->data.ptrvalue);
^
seqgraph.c: In function 'CutOffProc':
seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wmaybe-uninitialized]
val = fval/2;
^
seqgraph.c:841:14: note: 'fval' was declared here
FloatHi fval;
^
seqgraph.c:1020:41: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
StrCpy (buff, (CharPtr) eplist->data.ptrvalue);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function]
static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
^
seqgrphx.c: In function 'FilterMsgFunc':
seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (s == NULL)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c
seqpcc.c: In function 'PCCProc':
seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c
aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function]
static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c
valdlg.c: In function 'ClickRulesDoc':
valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable]
Int2 scroll_pos = 0;
^
valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable]
BaR sb_vert = NULL;
^
valdlg.c: In function 'UpdateRuleList':
valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable]
CommentRulePtr new_cr, last_cr = NULL;
^
valdlg.c: In function 'SaveRuleChanges':
valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
CommentSetDlgPtr dlg;
^
valdlg.c: In function 'LaunchCommentRulesEditor':
valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable]
MenU m;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c
vsm.c: In function 'VSMAboutProc':
vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable]
PaneL p;
^
vsm.c: In function 'VSeqMgrCreateMainWindow':
vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
ObjMgrPtr omp;
^
vsm.c: In function 'VSeqMgrPopulateMain':
vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable]
AsnTypePtr atp;
^
vsm.c: In function 'VSMGatherPictProc':
vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
BioseqSetPtr bssp;
^
vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
Int4 top, lineheight, left, bottom, width, maxwidth;
^
vsm.c: In function 'VSMAddPictureToEntity':
vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
Pointer ptr;
^
vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c
vsmfile.c: In function 'VSMGenericBinAsnOpen':
vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
vsmfile.c: In function 'VSMGenericFastaSave':
vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
Uint1 code;
^
vsmfile.c: In function 'VSMFastaProtSaveWithProduct':
vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
Uint1 code;
^
vsmfile.c: In function 'VSMSaveSetsAsFiles':
vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c
vsmutil.c: In function 'GetDocPosForError':
vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Int2 val;
^
vsmutil.c: At top level:
vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function]
static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
^
vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function]
static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
^
vsmutil.c: In function 'MakeValidatorReport':
vsmutil.c:879:17: warning: 'ch_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*feat_end = ch_2;
^
vsmutil.c:838:17: note: 'ch_2' was declared here
Char ch, ch_2;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c
udvgraph.c: In function 'UDV_click_item':
udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable]
Boolean IsTransNeeded=FALSE;
^
udvgraph.c: In function 'UDV_SendBSPSelectMsg':
udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable]
Int4 first_bsp_coord, bsp_coord_old,old_pos;
^
udvgraph.c: In function 'UDV_draw_helixDNA':
udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable]
Int2 cxChar_2,cyChar_2;
^
udvgraph.c: In function 'draw_logo':
udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable]
Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
^
udvgraph.c: In function 'UDV_draw_CDS_minus':
udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
numivals2=0,
^
udvgraph.c: In function 'UDV_draw_CDS_plus':
udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
udvgraph.c: In function 'UDV_draw_panel':
udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable]
ValNodePtr vnp_seqinfo=NULL;
^
udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable]
Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw;
^
udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable]
Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw;
^
In file included from ../include/asn2ff6.h:142:0,
from udvgraph.c:180:
udvgraph.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function]
static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
^
udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function]
static void UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
^
udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function]
static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
^
udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function]
static void UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
^
udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function]
static Int4 UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
^
udvgraph.c: In function 'UDV_GetCurrentDispRange':
udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*from_bsp=pgp->StartLetter;
^
udvgraph.c: In function 'UDV_Draw_features':
udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
^
udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wmaybe-uninitialized]
udvgraph.c:3196:47: warning: 'idx4' may be used uninitialized in this function [-Wmaybe-uninitialized]
stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
^
udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
^
udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wmaybe-uninitialized]
udvgraph.c:3182:49: warning: 'idx1' may be used uninitialized in this function [-Wmaybe-uninitialized]
start2=_max_(pgp->StartLetter,context->ivals[idx1]);
^
In file included from ../include/udviewer.h:225:0,
from udvgraph.c:177:
../include/udvdef.h:187:40: warning: 'stop_x2' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define _max_(a,b) ((a)>=(b)?(a):(b))
^
udvgraph.c:2803:21: note: 'stop_x2' was declared here
Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/
^
In file included from ../include/udviewer.h:225:0,
from udvgraph.c:177:
../include/udvdef.h:187:40: warning: 'stop_x' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define _max_(a,b) ((a)>=(b)?(a):(b))
^
udvgraph.c:2803:14: note: 'stop_x' was declared here
Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/
^
udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
MoveTo(_max_(stop_x2,stop_x)+GrData->udv_font.cxChar,y);
^
udvgraph.c: In function 'UDV_ClickProc':
udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (vmp && vmp->hFeatDlg){/*update Features List Dlg if needed;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c
udvopen.c: In function 'UDV_FileOpen':
udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b,b1,b2;
^
udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b,b1,b2;
^
udvopen.c: In function 'UDV_CreateListBioseqDlg':
udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress]
if (szName){
^
udvopen.c: In function 'UDV_FOpenCancelProc':
udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_set_PullMenus(&vmp->MainMenu,TRUE);
^
udvopen.c: In function 'UDV_analyze_SEP_for_open':
udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
vmp->entityID=entityID;
^
udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
vmp->dataptr=dataptr;
^
udvopen.c: In function 'UDV_FOpenAcceptProc':
udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_set_PullMenus(&vmp->MainMenu,TRUE);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c
udvpanel.c: In function 'UDV_GotoBtnProc':
udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable]
Int4 iValue,old_ivalue,line_num,from_bsp,to_bsp,
^
udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
udvpanel.c: In function 'CreateMainControls':
udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
Int2 cxChar,cyChar,Margins;
^
udvpanel.c: In function 'UDV_SearchFeatForKey':
udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1,b2;
^
udvpanel.c: At top level:
udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
^
udvpanel.c: In function 'InitFeaturesListDlg':
udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wmaybe-uninitialized]
PopupItem(pop,szSeqFeatClassName[k]);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
dotvibrant.c: In function 'DOT_DisplayHits':
dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable]
Int4 ycomp, xcomp;
^
dotvibrant.c: In function 'DOT_VscrlProc':
dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
Int2 visLines, vmargin, hmargin;
^
dotvibrant.c: In function 'DOT_HscrlProc':
dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
Int2 dx, visLines, offset, hmargin, vmargin;
^
dotvibrant.c: In function 'DOT_VCrossHairs':
dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size =15;
^
dotvibrant.c: In function 'DOT_HCrossHairs':
dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size = 15;
^
dotvibrant.c: In function 'DOT_MoveCrossHairs':
dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size = 15;
^
dotvibrant.c: In function 'DOT_DrawXAxis':
dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable]
Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/
^
dotvibrant.c: In function 'DOT_DrawYAxis':
dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable]
Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/
^
dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable]
Int4 pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
^
dotvibrant.c: In function 'DOT_SVDisplayDiags':
dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable]
Int4 diag, aln_diag;
^
dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable]
Int4 diag, aln_diag;
^
dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable]
Int4 width, height;
^
dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable]
Int4 p_VFrom, p_HFrom;
^
dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable]
Int4 p_VFrom, p_HFrom;
^
dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable]
Int4 stop, cutoff=0, q_start, s_start, length;
^
dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable]
SegmenT seg1, seg2, seg3, seg4;
^
dotvibrant.c: In function 'DOT_FillNewSeqBufs':
dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable]
DOTAlignInfoPtr alp=NULL;
^
dotvibrant.c: In function 'DOT_InitCInfo':
dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable]
Char colBuf[12]={""};
^
dotvibrant.c: In function 'DOT_SVDisplaySequence':
dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable]
Int4Ptr PNTR matrix;
^
dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable]
Int4 vis_2, buf_len;
^
dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable]
Int4 prot_threshold=0, bloc_cntr;
^
dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip1, mip2;
^
dotvibrant.c: In function 'DOT_SVClickProc':
dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable]
Int2 handled=0;
^
dotvibrant.c: In function 'DOT_ResizeFeatWindow':
dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c: In function 'DOT_ResizeSequenceWindow':
dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable]
Boolean is_visible1, is_visible2;
^
dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable]
Boolean is_visible1, is_visible2;
^
dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable]
Int2 height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
^
dotvibrant.c: In function 'DOT_HideFeatDlg':
dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
dotvibrant.c: In function 'DOT_SVBuildDiagViewer':
dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip;
^
dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable]
Char str1[41]={""}, str2[41]={""};
^
dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable]
Char str1[41]={""}, str2[41]={""};
^
dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c: In function 'DOT_UpdateDataRects':
dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
Int4 comp, dx, dy, xstart, ystart;
^
dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
Int4 comp, dx, dy, xstart, ystart;
^
dotvibrant.c: In function 'DOT_MsgFunc':
dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable]
DOTVibDataPtr vdp2 = NULL;
^
dotvibrant.c: In function 'DOT_ReleaseProc':
dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable]
Boolean xaxis_incr=TRUE, yaxis_incr=TRUE;
^
dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable]
Boolean xaxis_incr=TRUE, yaxis_incr=TRUE;
^
dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable]
DOTAlignInfoPtr alp=NULL;
^
dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip1=NULL;
^
dotvibrant.c: In function 'DOT_StartDOTPLOT':
dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable]
DOTVibDataPtr vdp;
^
dotvibrant.c: In function 'DOT_DoZoom':
dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c: In function 'DOT_ZoomProc':
dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable]
WindoW temport, w;
^
dotvibrant.c: In function 'AlnMgr2GetNextLine':
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
*n++;
^
dotvibrant.c: In function 'DOT_GetAlign':
dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable]
Int4 x1, y1, x2, y2, numlines=0, n=0, i=0;
^
dotvibrant.c: In function 'DOT_FillAlignInfoPointer':
dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable]
Int4 i=0, n=0;
^
dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer':
dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable]
Int4 i=0, n=0;
^
dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable]
Int4 numsaps = 0, numlines = 0;
^
dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable]
SeqAlignPtr sap=NULL, salp=NULL, sap_tmp=NULL;
^
dotvibrant.c: In function 'DOT_DoBlast':
dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable]
Char eval[11]={""};
^
dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
Boolean is_local;
^
dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID=0;
^
dotvibrant.c: In function 'DOT_CreateWindowDetails':
dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable]
GrouP g, g1, g2;
^
dotvibrant.c: In function 'DOT_ResizeMainWindow':
dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int2 height, width, in , gap;
^
dotvibrant.c: In function 'DOT_FindAlignment':
dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable]
Boolean lt_fixed=FALSE, rb_fixed=FALSE;
^
dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable]
Boolean lt_fixed=FALSE, rb_fixed=FALSE;
^
dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs':
dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
Uint4 itemID=0;
^
dotvibrant.c: In function 'SCP_OrganizeAlnsInSet':
dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable]
Int4 indextype;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from ../include/dotviewer.h:32,
from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/dotviewer.h:32,
from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function]
static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
^
dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function]
static void DOT_SVChangeLabels (GrouP g)
^
dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function]
static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
^
dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function]
static void DOT_HideAcceptProc(ButtoN b)
^
dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function]
static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
^
dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function]
static void DOT_GetInfoProc (IteM i)
^
dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function]
static void DOT_FeatAnalysisProc(ButtoN b)
^
dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function]
static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
^
dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function]
static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
^
dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function]
static FloatHi DOT_get_eval(Int4 exp)
^
dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function]
static void DOT_NewAnalysis (ButtoN b)
^
dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function]
static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
^
dotvibrant.c: In function 'DOT_GetNthSeqFromAlign':
dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
ctr = SeqPortRead(spp, buffer, 100);
^
dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer':
dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2380:23: note: 'strand2' was declared here
Uint1 strand1, strand2;
^
dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2380:14: note: 'strand1' was declared here
Uint1 strand1, strand2;
^
dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wmaybe-uninitialized]
sBuf[c]=*residue_names[(int)*s];
^
dotvibrant.c:2378:16: note: 'residue_names' was declared here
CharPtr PNTR residue_names;
^
dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2370:42: note: 's_pos' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2370:35: note: 'q_pos' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
hit_stop+=hit_stop/10;
^
dotvibrant.c:2370:25: note: 'hit_stop' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_HlSeq(sbSeg, rc, margin, i, BLOCK_SIZE, hit_start, hit_stop, Fh, chw_2);
^
dotvibrant.c:2370:14: note: 'hit_start' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wmaybe-uninitialized]
end=s+buf_len-1;
^
dotvibrant.c:2367:21: note: 'buf_len' was declared here
Int4 vis_2, buf_len;
^
dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_na)
^
dotvibrant.c:2361:27: note: 'is_na' was declared here
Boolean ambig=FALSE, is_na;
^
dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
end=s+buf_len-1;
^
dotvibrant.c:2357:14: note: 's' was declared here
Uint1Ptr s;
^
dotvibrant.c:2356:14: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr q;
^
dotvibrant.c: In function 'DOT_MakeMainViewer':
dotvibrant.c:6248:10: warning: 's_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:44: note: 's_stop' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 's_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:35: note: 's_start' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'q_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:27: note: 'q_stop' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'q_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:18: note: 'q_start' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'sname' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6208:35: note: 'sname' was declared here
Char PNTR qname, PNTR sname;
^
dotvibrant.c:6248:10: warning: 'qname' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6208:23: note: 'qname' was declared here
Char PNTR qname, PNTR sname;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
dlgutil1.c: In function 'IsAuthList':
dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
dlgutil1.c: In function 'TestAuthorDialog':
dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable]
CharPtr cp;
^
dlgutil1.c: In function 'TestIntervalEditor':
dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable]
Int2 fuzz_to;
^
dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable]
Int2 fuzz_from;
^
dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable]
Boolean isInterval, isPoint, fuzz_before, fuzz_after;
^
dlgutil1.c: In function 'CreateStandardEditMenu':
dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function]
static Boolean ParseSpecimenVoucherOk (CharPtr str)
^
dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function]
static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
dlgutil2.c: In function 'CreateImportFields':
dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable]
Boolean is_gap = FALSE;
^
dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars':
dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable]
Int4 x, y;
^
dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable]
Int4 x, y;
^
dlgutil2.c: In function 'GetTableDisplayCell':
dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
Int4 start_row, start_col;
^
dlgutil2.c: In function 'NewCreateInferenceDialog':
dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable]
FonT fnt;
^
dlgutil2.c: In function 'ClickableListOnKey':
dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable]
ClickableListPtr clp;
^
dlgutil2.c: In function 'GetSelectedClickableListText':
dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable]
Int2 item, row, col, char_offset;
^
dlgutil2.c: In function 'AutomatchFeatures':
dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable]
SeqIntPtr s1, s2, s3;
^
dlgutil2.c: At top level:
dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function]
static CharPtr GetNameForFeature (SeqFeatPtr sfp)
^
dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function]
static Int4 GetCategoryNumFromName (CharPtr category)
^
dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function]
static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
^
dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function]
static void ClickClickableListItem (DoC d, PoinT pt)
^
dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function]
static Boolean ParseMultiListQualOk (CharPtr val)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
e2trmlst.c: In function 'ReadAFew':
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c
e2docsum.c: In function 'FormatCdsSeq':
e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr gene = NULL;
^
e2docsum.c: In function 'FetchSequence':
e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable]
CharPtr currDbName;
^
e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
Uint1 group_segs = 0;
^
e2docsum.c: In function 'SaveDocsumProject':
e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SummFormPtr sfp;
^
e2docsum.c: In function 'RetrieveGeneration':
e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable]
Entrez2InfoPtr e2ip;
^
e2docsum.c: In function 'SetupMenus':
e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable]
ChoicE c;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/bspview.h:48,
from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strucapi.h:52:0,
from e2docsum.c:62:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable]
static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
^
e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function]
static Int4 GetBiostrucComplexity (void)
^
e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function]
static Int4 GetBiostrucMaxModels (void)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
asn2graphic.c: In function 'ParseFilterItem':
asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int2 i, j;
^
asn2graphic.c: In function 'GeneProductsLayoutInternal':
asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable]
Int4 newLeft, featureStart, rowMaxRight;
^
asn2graphic.c: In function 'ScaleSntDrawProc':
asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable]
RecT r;
^
asn2graphic.c: In function 'GphSentProc':
asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
Int4 scaleY;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
asn2graphic.c: In function 'ProcessRows':
asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0;
^
asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wmaybe-uninitialized]
SegmentTreeBot = CreateSegment (SegmentTreeMid, 0, 0);
^
asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wmaybe-uninitialized]
SegmentTreeMid = CreateSegment (SegmentTreeTop , 0, 0);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c
gbfview.c: In function 'RelModeFailText':
gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable]
Boolean hasPubs;
^
gbfview.c: In function 'PopulateFlatFile':
gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable]
Boolean doColors;
^
gbfview.c: In function 'PopulateFasta':
gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
if (ISA_na (bsp->mol)) {TRUE,
^
gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
Uint1 group_segs;
^
gbfview.c: In function 'PopulateAsnOrXML':
gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable]
Boolean lookupFar = FALSE;
^
gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable]
Boolean lockFar = FALSE;
^
gbfview.c: At top level:
gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function]
static Boolean ColorIcon (
^
gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function]
static void LookForPubs (BioseqPtr bsp, Pointer userdata)
^
gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function]
static void LookForFarBsp (
^
gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function]
static void LookForFarProds (
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c
gphview.c: In function 'ReleaseAlignment':
gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp;
^
gphview.c: In function 'DrawAlignOnAllSequences':
gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable]
ValNode vn;
^
gphview.c: In function 'ReleaseDesktop':
gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable]
SegmenT seg;
^
gphview.c: In function 'AutoScrollGeneName':
gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
Int2 num;
^
gphview.c: In function 'DisplayGeneChoiceWindow':
gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
PrompT p;
^
gphview.c: In function 'PrintGraphical':
gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable]
MsgAnswer ans;
^
gphview.c: In function 'PopulateAsn2GphGraphic':
gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable]
Int4 min;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c
gphdraw.c: In function 'GraphSentProc':
gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
Int4 scaleY;
^
gphdraw.c: In function 'DrawGraphToPanel':
gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable]
Int4Ptr xpoints, xp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c
gxydraw.c: In function 'DotXYPlot':
gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wmaybe-uninitialized]
gsp->xaxiscount = xaxiscount;
^
gxydraw.c:182:19: note: 'xaxiscount' was declared here
Int4 xaxiscount, yaxiscount;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c
seqpanel.c: In function 'FillFeatureInfo':
seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c: In function 'DrawFeatureCodonLines':
seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
Char tmp[2];
^
seqpanel.c: In function 'DrawFeature':
seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable]
Int4 prot_len;
^
seqpanel.c: In function 'GetSeqChapterFeatureInfo':
seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel':
seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable]
Int4 totallines;
^
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable]
Int4 fLeft, fRight, swap;
^
seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable]
Int4 fLeft, fRight, swap;
^
seqpanel.c: In function 'PrintTranslatedFrame':
seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
Char tmp[2];
^
seqpanel.c: In function 'ExportSequenceText':
seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign]
complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
^
In file included from ../include/alignmgr2.h:112:0,
from seqpanel.c:39:
../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr'
NLM_EXTERN CharPtr complement_string (CharPtr str);
^
seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable]
ValNodePtr curr_para_strings = NULL;
^
seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1Ptr buf;
^
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable]
Int4 direction;
^
seqpanel.c: In function 'SeqAlnOnDrag':
seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable]
Boolean is_double_click, is_ctrl;
^
seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable]
Boolean is_double_click, is_ctrl;
^
seqpanel.c: In function 'ResizeSeqEdView':
seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable]
Int4 sequence_pos = 0;
^
seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable]
Int4 height, width;
^
seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx':
seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c: In function 'WriteAlignmentContiguousToFile':
seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c: In function 'ReverseSequenceStrandsInAlignment':
seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function]
static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
^
seqpanel.c: In function 'SeqEdFindPatternDialog':
seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) p1, (HANDLE) fdp->pattern_txt, (HANDLE)fdp->prompt,
^
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wmaybe-uninitialized]
prot_len = StringLen (str_prot);
^
seqpanel.c:3810:21: note: 'str_prot' was declared here
CharPtr str_prot;
^
seqpanel.c: In function 'SeqEdExportProc':
seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
^
seqpanel.c:4233:17: note: 'seq_pos' was declared here
Int4 seq_pos;
^
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_left_end)
^
seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if (is_right_end)
^
seqpanel.c: In function 'onDrawSeqPanel':
seqpanel.c:1301:24: warning: 'alnbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemCpy(buf, alnbuf + from, len);
^
seqpanel.c:2466:33: note: 'alnbuf' was declared here
Uint1Ptr buf, seqbuf, alnbuf;
^
seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
^
seqpanel.c:2466:25: note: 'seqbuf' was declared here
Uint1Ptr buf, seqbuf, alnbuf;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c
ingengraph.c: In function 'Ing_BigEncodeIdxFeat':
ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage':
ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp=NULL;
^
ingengraph.c: In function 'Ing_AddAlignsToOverviewPage':
ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable]
Char buf[41]={""};
^
ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable]
Boolean NewLine=FALSE;
^
ingengraph.c: In function 'Ing_DrawOverviewPage':
ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
Int4 offset;
^
In file included from ../include/vibrant.h:130:0,
from ../include/ingengraph.h:54,
from ingengraph.c:45:
../include/vibdefns.h:438:17: warning: unused variable 'Nlm_Visible' [-Wunused-variable]
#define Visible Nlm_Visible
^
ingengraph.c:488:14: note: in expansion of macro 'Visible'
Boolean Visible=FALSE;
^
ingengraph.c: In function 'Ing_PopOverviewPage':
ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
Int4 margin, len;
^
ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable]
Char buf[50]={""};
^
ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable]
SeqAnnotPtr sanp=NULL;
^
ingengraph.c: In function 'Ing_PopDetailedPage':
ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable]
SegmenT CurrentSeg=NULL;
^
ingengraph.c: In function 'Ing_ExploreSegments':
ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable]
Boolean isDraft = FALSE;
^
ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp = NULL;
^
ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable]
GBBlockPtr gbp = NULL;
^
ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable]
Uint1 orange[3], black[3];
^
ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable]
Uint1 indigo[3], lime[3];
^
ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable]
Uint1 indigo[3], lime[3];
^
ingengraph.c: In function 'Ing_AddGCRect':
ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable]
FloatHi comp2, comp_prev;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/ingengraph.h:63,
from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function]
static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
^
ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function]
static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
^
ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c
ingenext.c: In function 'Ing_KeepTheBestAlignments':
ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
AMAlignIndex2Ptr amaip = NULL;
^
ingenext.c: In function 'Ing_HandleQBlastResults':
ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
^
ingenext.c: In function 'Ing_HandleResults':
ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
^
ingenext.c: In function 'Ing_AccepttRNAargsProc':
ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable]
ValNodePtr paramlist = NULL;
^
ingenext.c: In function 'Ing_tRNAscanProc':
ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable]
ValNodePtr moveMe = NULL;
^
ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable]
TexT first = NULL;
^
ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable]
CharPtr args = NULL;
^
ingenext.c: In function 'Ing_ReadtRNAConfigFile':
ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable]
Boolean demomode = FALSE;
^
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
Boolean is_local, first_bsp=TRUE;
^
ingenext.c: In function 'Ing_CreateDotMatrixForm':
ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
^
ingenext.c: In function 'Ing_RunSpidey':
ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable]
SeqAnnotPtr sanp = NULL;
^
ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable]
SPI_mRNAPtr spidp_next = NULL;
^
ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable]
SPI_mRNAPtr spidp_head = NULL;
^
ingenext.c: In function 'Ing_ReadmRNAs_ext':
ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
^
ingenext.c: In function 'Ing_DeleteInsertInGenomic':
ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable]
Int2 newsegs = 0, offset = 0;
^
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable]
Char str[200] = {""};
^
ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable]
AMAlignIndex2Ptr amaip = NULL;
^
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip = NULL;
^
ingenext.c: In function 'Ing_PrintSpideyReport':
ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable]
Int4 mmis, gmis, miscount = 0;
^
ingenext.c: In function 'Ing_PrintBlastReport':
ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable]
Boolean more = FALSE;
^
In file included from ../include/vibrant.h:130:0,
from ../include/dlogutil.h:48,
from ../include/import.h:48,
from ../include/ingenwin.h:64,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/vibdefns.h:622:16: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable]
#define DkGray Nlm_DkGray
^
ingenext.c:3850:18: note: in expansion of macro 'DkGray'
Uint1 DkGray[3];
^
ingenext.c: In function 'Ing_PopulateReport':
ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip=NULL;
^
ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable]
CharPtr temp = NULL;
^
ingenext.c: In function 'Ing_ResizeReportWindow':
ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/ingenwin.h:60,
from ../include/ingenext.h:53,
from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from ../include/ingenwin.h:62,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from ../include/ingenwin.h:62,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
^
ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable]
static Int4 querytimerlimit = 100;
^
ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable]
static Int4 querytimercount = 0;
^
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
e_tmp->next=e_head;
^
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
gstart = start + (stop - gstart);
^
ingenext.c:3206:45: warning: 'mstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if (mstart == R1 || mstart == R2 || mstart == R3){
^
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2617:33: warning: 'nmismatches' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 gmis, mmis, nmismatches, nkeep = 0;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c
ingenwin.c: In function 'Ing_PopulateDetailedPage':
ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable]
Boolean bSelected = FALSE;
^
ingenwin.c: In function 'Ing_DoRange':
ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp;
^
ingenwin.c: In function 'Ing_PopulateCpG':
ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
Int2 cxChar, nchars;
^
ingenwin.c: In function 'Ing_ResizeCpGWindow':
ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
ingenwin.c: In function 'Ing_PopulateMotif':
ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
Int2 cxChar, nchars;
^
ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable]
Int4 slen, swidth;
^
ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable]
Int4 slen, swidth;
^
ingenwin.c: In function 'Ing_ResizeMotifWindow':
ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable]
CharPtr name = NULL;
^
ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
ingenwin.c: In function 'Ing_ShowComplexity':
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
^
ingenwin.c: In function 'Ing_CreateNewFeature':
ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable]
Uint1 rnatype=0;
^
ingenwin.c: In function 'Ing_GetAlignmentIntervals':
ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable]
SeqIdPtr master = NULL;
^
ingenwin.c: In function 'Ing_OldGetAlignmentIntervals':
ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable]
SeqIdPtr master = NULL;
^
ingenwin.c: In function 'Ing_OldMakeLocListFromSAP':
ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable]
SeqLocPtr slp1 = NULL, slp2 = NULL;
^
ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable]
SeqLocPtr slp1 = NULL, slp2 = NULL;
^
ingenwin.c: In function 'Ing_OM_MsgFunc':
ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress]
if (&sfc)
^
ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable]
Uint2 segID=0;
^
ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep=NULL;
^
ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable]
Int4 score=0, number=0;
^
ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable]
Int4 score=0, number=0;
^
ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c: In function 'Ing_MoveCursor':
ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable]
Uint1 grayClr2[3];
^
ingenwin.c: In function 'Ing_FeatViewerClickProc':
ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
^
ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp=NULL;
^
ingenwin.c: In function 'Ing_SequenceClickProc':
ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
SelStructPtr ssp=NULL;
^
ingenwin.c: In function 'Ing_ReadInBlastAsn':
ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable]
IngReportPtr Report=NULL;
^
ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip=NULL;
^
ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp=NULL;
^
ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable]
SeqAlignPtr n_sap=NULL;
^
ingenwin.c: In function 'Ing_ParseSeqIdFile':
ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp=NULL;
^
ingenwin.c: In function 'Ing_ReadInFeatureTable':
ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr sanp;
^
ingenwin.c: In function 'Ing_AssembleGenscanInfo':
ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp=NULL;
^
ingenwin.c: In function 'Ing_ReadInGenscan':
ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable]
CharPtr letter=NULL, str=NULL;
^
ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable]
CharPtr letter=NULL, str=NULL;
^
ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable]
Boolean found=FALSE, first_pass=FALSE;
^
ingenwin.c: In function 'Ing_AssembleTabDelimited':
ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable]
Int4 score;
^
ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp=NULL;
^
ingenwin.c: In function 'Ing_ReadInTabDelimited':
ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable]
CharPtr tmp=NULL, str=NULL, label_str=NULL;
^
ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp=NULL, str=NULL, label_str=NULL;
^
ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable]
IngInfoPtr lip_tmp=NULL;
^
ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable]
CharPtr letter=NULL;
^
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable]
IngReportPtr Report=NULL;
^
ingenwin.c: In function 'Ing_FileOpenMain':
ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable]
SeqEntryPtr sep_orig=NULL, sep=NULL;
^
ingenwin.c: In function 'Ing_ResizeMainWindow':
ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable]
Int2 RulerHeight, InfoHeight;
^
ingenwin.c: In function 'Ing_OpenFromFileORNetwork':
ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b,b2;
^
ingenwin.c: In function 'Ing_EditFeature':
ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable]
IngGenomeViewerPtr igvp=NULL;
^
ingenwin.c: In function 'Ing_MarkSeqAnnot':
ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable]
Boolean bNoParent = FALSE;
^
ingenwin.c: In function 'Ing_CreateMismatchedDialog':
ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain]
GrouP g, g1, g2, main;
^
ingenwin.c: In function 'Ing_PropagateClickProc':
ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable]
Uint2 primID=0;
^
ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 itemtype=0;
^
ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID=0;
^
ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID=0;
^
ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable]
SelStructPtr ssp=NULL;
^
ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable]
IngGenomeViewerPtr igvp=NULL;
^
ingenwin.c: In function 'Ing_PrintCompProteins':
ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable]
Char str1[200] = {""}, str2[10] = {""};
^
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable]
Uint1 ARROW=NO_ARROW;
^
ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable]
Int4 stringwidth = 0;
^
ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable]
Int4 left = 10;
^
ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable]
PrimitivE prim;
^
ingenwin.c: In function 'Ing_DoPropagate':
ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable]
Char strErr[50]={""};
^
ingenwin.c: In function 'Ing_GetFromNetwork':
ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable]
Char szAppName [10]={"Ingenue"};
^
ingenwin.c: In function 'Ing_SetupMainWindow':
ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable]
Char szAppName [10]={"Ingenue"};
^
ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/ingenwin.h:60,
from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from ../include/ingenwin.h:62,
from ingenwin.c:45:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from ../include/ingenwin.h:62,
from ingenwin.c:45:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function]
static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
^
ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function]
static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
^
ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function]
static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
^
ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function]
static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
^
ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function]
static void Ing_BspListProc(IteM i)
^
ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function]
static void Ing_ItemtoNetwork(IteM i){
^
ingenwin.c: In function 'Ing_ReplaceMismatchedProc':
ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
^
ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
last_pos = j;
^
ingenwin.c:5137:17: note: 'j' was declared here
Int4 i, j, k, row;
^
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
^
ingenwin.c:3255:17: note: 'strand' was declared here
Uint1 strand;
^
ingenwin.c: In function 'Ing_KozakProc':
ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_SignalPeptideProc':
ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_RepeatsProc':
ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_PolyAProc':
ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_CpGProc':
ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c
macrodlg.c: In function 'CloseMacroEditorWindowProc':
macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable]
Boolean do_remove = FALSE;
^
macrodlg.c: In function 'ExistingTextDialog':
macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
PrompT ppt;
^
macrodlg.c: In function 'SourceQualChoiceDialog':
macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c: In function 'SourceConstraintDialog':
macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c: In function 'CDSGeneProtQualConstraintDialog':
macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType':
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch]
switch (constraint_type) {
^
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch]
macrodlg.c: In function 'TestApplyActionDialog':
macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'TestEditActionDialog':
macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'TestRemoveOutsideActionDialog':
macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'AddMacroActions':
macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Boolean rval = FALSE;
^
macrodlg.c: In function 'PointerToSampleDialog':
macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable]
Int4 max_char_per_line;
^
macrodlg.c: In function 'SampleDialogCopy':
macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
macrodlg.c: In function 'SingleMacroAcceptButton':
macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
Int4 num_fields, num_features;
^
macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable]
Int4 num_fields, num_features;
^
macrodlg.c: In function 'LaunchMacroTemplateEditor':
macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable]
BaseFormPtr bfp;
^
macrodlg.c: At top level:
macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function]
static DialoG LocOrStringConstraintDialog (GrouP h, Nlm_ChangeNotifyProc change_notify, Pointer change_userdata)
^
macrodlg.c: In function 'ApplyProductUpdateTableBtn':
macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wmaybe-uninitialized]
FreeLog (lip);
^
macrodlg.c: In function 'RemoveSequencesActionDialog':
macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
dlg->dialog = (DialoG) p;
^
macrodlg.c: In function 'ActionToSingleMacroActionForm':
macrodlg.c:21322:25: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 val, i;
^
macrodlg.c: In function 'BuildEditMacroActionWindow':
macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) dlg->feature_type_dlg,
^
macrodlg.c:14910:47: note: 'indexer_only_group' was declared here
GrouP p, g, parts_group, x, indexer_only_group;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c
biosrc.c: In function 'CreateBioSourceDialog':
biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
PrompT y;
^
biosrc.c: At top level:
biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function]
static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
^
biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function]
static Pointer OrgmodDialogToOrgModPtr (DialoG d)
^
biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function]
static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
^
biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function]
static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
^
biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function]
static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c
cdrgn.c: In function 'ProductToSeqLocPtr':
cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable]
RnaFormPtr rfp = NULL;
^
cdrgn.c: In function 'CreateCodeBreakAlist':
cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog':
cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable]
Uint1 aa;
^
cdrgn.c: In function 'PopulateAAPopup':
cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
cdrgn.c: At top level:
cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
static Int4 AccessionToGi (CharPtr string)
^
cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function]
static Uint1 check_rna_type (Uint1 type)
^
cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function]
static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
^
cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function]
static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
^
cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function]
static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
^
cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function]
static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF import.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c
pubdesc.c: In function 'SetPubdescImportExportItems':
pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default]
&&& pfp->currentPage == 1) {
^
pubdesc.c: In function 'MakeReplaceAuthorsForm':
pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable]
PubdescEditProcsPtr pepp;
^
pubdesc.c: In function 'DisplayDocSum':
pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable]
Int2 lineheight;
^
pubdesc.c: At top level:
pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function]
static void Quit (ButtoN b)
^
pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function]
static void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c
seqsub.c: In function 'SeqSubmitFromTemplateEditor':
seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
ObjMgrDataPtr omdp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c
mapgene.c: In function 'load_new_align':
mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp, match_slp, t_slp;
^
mapgene.c: In function 'figure_loc_by_position':
mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable]
Int4 start, stop, center;
^
mapgene.c: In function 'cvt_loc_for_single_gene':
mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable]
Int4 offset, align_offset, p_align_offset;
^
mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable]
Int4 shift = 0;
^
mapgene.c: In function 'print_header_for_center':
mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
CharPtr link;
^
mapgene.c: In function 'PrintGeneticMarkerForOneMap':
mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
CharPtr link;
^
mapgene.c: At top level:
mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function]
static void print_this_id (SeqIdPtr sip)
^
mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function]
static Int4 get_center_pointer(SeqLocPtr slp)
^
mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function]
static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
^
mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function]
static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
^
mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function]
static void adjust_slp_list(ValNodePtr slp_list)
^
mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function]
static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
^
mapgene.c: In function 'PrintContigForOneMap':
mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wmaybe-uninitialized]
for(i = 0; i<num; ++i)
^
mapgene.c:3152:7: note: 'yac_num' was declared here
Int4 yac_num;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c
prtgene.c: In function 'print_store_for_html':
prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable]
Char white_sp;
^
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c
ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD':
ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
ddvclick.c: In function 'DDV_SendBSPSelectMsg':
ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
ddvclick.c: In function 'DDV_DragProc':
ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ParaGPtr cur_pgp=NULL;
^
ddvclick.c: In function 'DDV_HoldProc':
ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable]
Boolean Scroll=FALSE;
^
ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ParaGPtr cur_pgp=NULL;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function]
static void EraseOutline(PaneL p) {
^
ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function]
static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
^
ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function]
static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
^
ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function]
static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
^
ddvclick.c: In function 'DDV_GetSeqNameGivenRow':
ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!sip)
^
ddvclick.c: In function 'DDV_ReleaseProc':
ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1085:18: note: 'bsp_coord_start' was declared here
Int4 bsp_coord_start, bsp_coord_stop, ParaGLine_Num, col;
^
ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1091:18: note: 'pgp' was declared here
ParaGPtr pgp;
^
ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1085:35: note: 'bsp_coord_stop' was declared here
Int4 bsp_coord_start, bsp_coord_stop, ParaGLine_Num, col;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
ddvgraph.c: In function 'DDV_DrawSequence':
ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable]
Int2 decal=1,i,x,y,pos=0;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c
ddvopen.c: In function 'DDV_GetAndCheckSeqAlign':
ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
Uint2 nRet=DVV_MSG_M_OK;
^
ddvopen.c: In function 'DDV_FOpenAcceptProc':
ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
Uint2 nRet=DVV_MSG_M_OK,The_entityID;
^
ddvopen.c: In function 'DDV_NetOpen_okProc':
ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable]
Int2 AccessType,procval;
^
ddvopen.c: In function 'DDV_ImportBioseqDlg':
ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
ddvopen.c: In function 'DDV_HideDlg':
ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function]
static void DDV_Convert(ButtoN g) {
^
ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function]
static void DDV_NoConvert(ButtoN g) {
^
ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function]
static Boolean DDV_IsInt(CharPtr szAccess)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
ddvpanel.c: In function 'DDV_CreateViewerPanel':
ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
Int2 cxChar,cyChar;
^
ddvpanel.c: In function 'DDV_DispStyles_OkProc':
ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable]
Char szBuf[15]={""};
^
ddvpanel.c: In function 'DDV_ExportTexte':
ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable]
ButtoN chk2,chk3,chk4,chk5,chk6,browse,ok;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function]
static void DDV_DeleteRow(IteM i)
^
ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function]
static void DDV_MoveRowLeft(IteM i)
^
ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function]
static void DDV_MoveRowRight(IteM i)
^
ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function]
static void DDV_MoveLeftBoundaryLeft(IteM i)
^
ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function]
static void DDV_MoveLeftBoundaryRight(IteM i)
^
ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function]
static void DDV_MoveRightBoundaryLeft(IteM i)
^
ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function]
static void DDV_MoveRightBoundaryRight(IteM i)
^
ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function]
static void write_annot(SeqAlignPtr align)
^
ddvpanel.c: In function 'DDVExportTexteOkProc':
ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wmaybe-uninitialized]
DDV_DumpSAPInFastaFile(&(dmp->MSA_d.pgp_l),&dob, hFile,bPrintGap);
^
ddvpanel.c: In function 'DDV_SortPGPLineNum':
ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
n+=pgp->nLines;
^
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
objmmdb1.c: In function 'BiostrucAsnRead':
objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucIdFree':
objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucIdAsnRead':
objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucSetAsnRead':
objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucAnnotSetAsnRead':
objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead':
objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucDescrFree':
objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucHistoryAsnRead':
objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucReplaceAsnRead':
objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree':
objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucSourceAsnRead':
objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead':
objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucGraphAsnRead':
objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiomolDescrFree':
objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueGraphAsnRead':
objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'MoleculeGraphAsnRead':
objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'InterResidueBondAsnRead':
objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueAsnRead':
objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueGraphPntrFree':
objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'ResidueGraphPntrAsnRead':
objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucGraphPntrAsnRead':
objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead':
objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomAsnRead':
objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'IntraResidueBondAsnRead':
objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ChiralCenterAsnRead':
objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomPntrAsnRead':
objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomPntrSetAsnRead':
objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:73:0,
from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
objmmdb2.c: In function 'BiostrucModelAsnRead':
objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ModelDescrFree':
objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'ModelSpaceAsnRead':
objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'Coordinates_coordinatesFree':
objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'Coordinates_coordinatesAsnRead':
objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'ReferenceFrameAsnRead':
objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'CoordinatesFree':
objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'AtomicCoordinatesAsnRead':
objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'Surface_surfaceFree':
objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'Surface_surfaceAsnRead':
objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'DensityCoordinatesAsnRead':
objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ModelSpacePointsAsnRead':
objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsFree':
objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'AtomicOccupanciesAsnRead':
objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AlternateConformationIdsAsnRead':
objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ConformationEnsembleAsnRead':
objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead':
objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead':
objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'TMeshAsnRead':
objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'TrianglesAsnRead':
objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c:828:10: note: 'choice' was declared here
Uint1 choice;
^
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c:1761:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
objmmdb3.c: In function 'BiostrucFeatureSetAsnRead':
objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphPntrsFree':
objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'AtomPntrsAsnRead':
objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphAlignmentAsnRead':
objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphInteractionAsnRead':
objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'SphereAsnRead':
objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ConeAsnRead':
objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'CylinderAsnRead':
objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BrickAsnRead':
objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'TransformAsnRead':
objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucFeatureSetDescrFree':
objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'Location_locationFree':
objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'Property_propertyFree':
objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'ColorPropAsnRead':
objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'CameraAsnRead':
objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucScriptAsnRead':
objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionSimilarityAsnRead':
objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'OtherFeatureAsnRead':
objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead':
objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'MoleculePntrsAsnRead':
objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead':
objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ResidueIntervalPntrAsnRead':
objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionCoordinatesAsnRead':
objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionBoundaryFree':
objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'AlignStatsAsnRead':
objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RealValueAsnRead':
objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ModelSpacePointAsnRead':
objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'MoveFree':
objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'RotMatrixAsnRead':
objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'TransMatrixAsnRead':
objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'GLMatrixAsnRead':
objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucScriptStepAsnRead':
objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
objmmdb3.c: In function 'ChemGraphPntrsAsnRead':
objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead':
objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'RegionBoundaryAsnRead':
objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'MoveAsnRead':
objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c:3401:10: note: 'choice' was declared here
Uint1 choice;
^
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c:2303:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c
objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead':
objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead':
objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dColorAsnRead':
objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dBackboneStyleAsnRead':
objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dGeneralStyleAsnRead':
objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead':
objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dStyleSettingsAsnRead':
objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead':
objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dStyleTableItemAsnRead':
objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dResidueRangeAsnRead':
objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead':
objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dObjectLocationAsnRead':
objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dUserAnnotationAsnRead':
objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dGLMatrixAsnRead':
objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dVectorAsnRead':
objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dViewSettingsAsnRead':
objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from ../include/mapcn3d.h:8:0,
from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/mapcn3d.h:8:0,
from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
mmdbapi.c: In function 'MakeAModelstruc':
mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable]
PDNMS pdnmsCount = NULL;
^
mmdbapi.c: In function 'AddPFBSelect':
mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable]
PMSD pmsdStruc = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
mmdbapi1.c: In function 'FreeAtomicModelAsnLists':
mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable]
CoordinatesPtr pcoThis = NULL;
^
mmdbapi1.c: In function 'FetchBS':
mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable]
Boolean bIsNetwork = FALSE;
^
mmdbapi1.c: In function 'FreeSurfaceModelAsnList':
mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable]
ValNodePtr pvnX = NULL;
^
mmdbapi1.c: In function 'MakeChemGraphNodeList':
mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable]
ValNodePtr pvnThis = NULL;
^
mmdbapi1.c: In function 'DoApplyTransform':
mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'DoReverseTransform':
mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable]
PSFS psfsThis = NULL;
^
mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable]
BiostrucFeaturePtr pbsfThis = NULL;
^
mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable]
BiostrucFeaturePtr pbsf=NULL;
^
mmdbapi1.c: In function 'fnPBSFtoPSA':
mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable]
BiostrucFeaturePtr pbsf=NULL;
^
mmdbapi1.c: In function 'InstallAlignedSlave':
mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable]
PSFS psfsThis = NULL;
^
mmdbapi1.c: In function 'BiostrucAddFeature':
mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable]
Boolean ncbiVast = FALSE;
^
mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable]
Boolean pdbFootnote = FALSE;
^
mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable]
Boolean pdbSite = FALSE;
^
mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable]
DValNodePtr pdvnThis = NULL;
^
mmdbapi1.c: In function 'BiostrucAsnGet':
mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aop;
^
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wmaybe-uninitialized]
pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
mmdbapi2.c: In function 'GetAtomLocs':
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (pmadThis)
^
mmdbapi2.c: In function 'AssignAtomLocId':
mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignBackBone':
mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignVirtual':
mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignIons':
mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'MolFromPDBChain':
mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi2.c: In function 'SeqStringFromMol':
mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable]
Int4 iTest =0;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
mmdbapi3.c: In function 'WritePDBHeader':
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(org)
^
mmdbapi3.c: In function 'WritePDBRemarks':
mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable]
int len;
^
mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable]
Char pcThis[81];
^
mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable]
BiostrucDescrPtr pbsdrLast = NULL;
^
mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable]
BiostrucDescrPtr pbsdrThis = NULL;
^
mmdbapi3.c: In function 'WritePDBConnect':
mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi3.c: In function 'WritePDBModelList':
mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable]
Int4 iCount;
^
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable]
CharPtr pcElName = NULL;
^
mmdbapi3.c: In function 'WriteFASTAMolecule':
mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int4 iTest =0;
^
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
mmdbapi4.c: In function 'RefreshSurface':
mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable]
Int4 iVal = 0;
^
mmdbapi4.c: In function 'FreeCoordinatesAsnLists':
mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable]
DensityCoordinatesPtr pdcThis = NULL;
^
mmdbapi4.c: In function 'FreeRedundantAsn':
mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable]
PDNMM pdnmmThis = NULL;
^
mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
BiostrucModelPtr pbsmThis = NULL;
^
mmdbapi4.c: In function 'RefreshModelAsnMem':
mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable]
Int4 iCoordSets = 0;
^
mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable]
AtomPntrsPtr pappThis = NULL;
^
mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable]
ModelSpacePointsPtr pmspThis = NULL;
^
mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable]
AtomicOccupanciesPtr pocThis = NULL;
^
mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable]
AlternateConformationIdsPtr paciThis = NULL;
^
mmdbapi4.c: In function 'RebuildChemGraphAsn':
mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable]
Boolean bOK = TRUE;
^
mmdbapi4.c: In function 'WriteASNChemGraphOnly':
mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable]
Int4 iHash = 0;
^
mmdbapi4.c: In function 'FreeSingleModel':
mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable]
PDNML pdnml = NULL;
^
mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable]
BiostrucModelPtr pbsmTemp = NULL;
^
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable]
AsnIoPtr paioAIP = NULL;
^
mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
BiostrucModelPtr pbsmThis = NULL;
^
mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable]
BiostrucPtr pBSThis = NULL;
^
mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable]
Boolean bFirst = TRUE;
^
mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable]
Int2 iTest = 0;
^
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean bRet;
^
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function 'LoadSubsetTable':
vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 i, j, n, len, strindex, ndoms, nsubs;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c
prunebsc.c: In function 'PruneFeatureSet':
prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
^
prunebsc.c: In function 'PruneModel':
prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable]
ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
^
prunebsc.c: In function 'PruneBiostruc':
prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
^
prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
^
prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
^
prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((!StringICmp("NCBI assigned secondary structure", feature_name)) ||
^
prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wmaybe-uninitialized]
pirbnew->next = pirb;
^
prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wmaybe-uninitialized]
currenthet->next = het;
^
prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsmpTail->next = PruneModel(bsmp, pvnIds, mol_id);
^
prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (*chnid == *chain)
^
prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
switch(mtype)
^
prunebsc.c:173:8: note: 'mtype' was declared here
Int4 mtype, molecule_id;
^
prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wmaybe-uninitialized]
currenthet->next = newhet;
^
prunebsc.c:171:47: note: 'currenthet' was declared here
MoleculeGraphPtr newhet = NULL, het = NULL, currenthet;
^
prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
switch(mtype)
^
prunebsc.c:102:8: note: 'mtype' was declared here
Int4 mtype;
^
prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wmaybe-uninitialized]
currentbp->next = newbp;
^
prunebsc.c:100:38: note: 'currentbp' was declared here
MoleculeGraphPtr newbp, bp = NULL, currentbp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c
objcdd.c: In function 'CddIdFree':
objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'CddIdAsnRead':
objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddIdSetAsnRead':
objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddIdSetAsnWrite':
objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddAsnRead':
objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddSetAsnRead':
objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddSetAsnWrite':
objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddTreeAsnRead':
objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddTreeSetAsnRead':
objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddTreeSetAsnWrite':
objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodesAsnRead':
objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddPrefNodesAsnWrite':
objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddProjectAsnRead':
objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddOrgRefAsnRead':
objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddOrgRefSetAsnRead':
objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddOrgRefSetAsnWrite':
objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodeDescrFree':
objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'CddPrefNodeDescrAsnRead':
objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddPrefNodeDescrSetAsnRead':
objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite':
objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'GlobalIdAsnRead':
objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddRepeatAsnRead':
objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddBookRefAsnRead':
objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddDescrSetAsnRead':
objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddDescrSetAsnWrite':
objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'MatrixAsnRead':
objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'TriangleAsnRead':
objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'UpdateCommentFree':
objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'UpdateCommentAsnRead':
objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'UpdateAlignAsnRead':
objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'RejectIdAsnRead':
objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'RejectIdAsnWrite':
objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'FeatureEvidenceFree':
objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'FeatureEvidenceAsnRead':
objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'AlignAnnotAsnRead':
objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'AlignAnnotSetAsnRead':
objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'AlignAnnotSetAsnWrite':
objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'DomainParentAsnRead':
objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'SequenceTreeAsnRead':
objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'AlgorithmTypeAsnRead':
objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'SeqTreeNodeAsnRead':
objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'Children_footprintAsnRead':
objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'NodeAnnotationAsnRead':
objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddViewerRectAsnRead':
objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddViewerAsnRead':
objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddScriptAsnRead':
objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from objcdd.c:6:0:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from objcdd.c:6:0:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from objcdd.c:7:0:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objcdd.c: In function 'CddDescrAsnRead':
objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c
cddutil.c: In function 'CddGetPmIds':
cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable]
Boolean bRefOpen = FALSE;
^
cddutil.c: In function 'CddGetAnnotNames':
cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, vnpHead = NULL;
^
cddutil.c: In function 'CddCheckForRepeats':
cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress]
if (!CddHasConsensus) return FALSE;
^
cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg':
cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable]
Int4 lastm, lasts;
^
cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable]
Int4 lastm, lasts;
^
cddutil.c: In function 'SeqAlignInform':
cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddAlignInform':
cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddPssmInform':
cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddPosFreqInform':
cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddDenDiagCposComputation':
cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddCposComputation':
cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddRetrieveBioseqById':
cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable]
Int2 retcode = 1;
^
cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable]
Int4 uid = 0;
^
cddutil.c: In function 'CddConsensus':
cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable]
Int4 m_last, m_frst, s_insert, m_end;
^
cddutil.c: In function 'CddCposCompPart1':
cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddGetNewIndexForThreading':
cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable]
Int4 i, Index=0;
^
cddutil.c: In function 'CddCposComp':
cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr ColumnHead, LetterHead, newRow, RowHead, newLetter;
^
cddutil.c: In function 'CddDumpTaxLinks':
cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable]
Int4 txid = 0, gi = 0;
^
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
/*---------------------------------------------------------------------------*/
^
In file included from cddutil.c:349:0:
../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "cdd.h24";
^
../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/cddutil.h:205:0,
from cddutil.c:353:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function]
static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
^
In file included from cddutil.c:353:0:
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location);
^
cddutil.c: In function 'CddBioseqCopy':
cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wmaybe-uninitialized]
newbsp->seq_ext = (Pointer)head;
^
cddutil.c: In function 'CddCopyMSLDenDiag':
cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wmaybe-uninitialized]
ddpTail->next = ddpNew;
^
cddutil.c: In function 'CddCalculateTriangle':
cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (buffer1) MemFree(buffer1);
^
cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wmaybe-uninitialized]
pscTail->next = psc; pscTail = psc; psc = NULL;
^
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wmaybe-uninitialized]
Seq_Mtf* pssm;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c
cddposutil.c: In function 'CddfindThreshSequences':
cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */
^
cddposutil.c: In function 'CddfindDenseDiagThreshSequences':
cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */
^
cddposutil.c: In function 'CddposFreqsToMatrix':
cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4u)) + (sizetype)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
^
cddposutil.c: In function 'CddposDenseDiagDemographics':
cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable]
Boolean is_new_id = FALSE;
^
cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable]
Int4 segIndex; /*Index for which piece we are at*/
^
cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable]
Int4 startQ, startS; /*Indices into array of starting positions*/
^
cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable]
Int4 startQ, startS; /*Indices into array of starting positions*/
^
cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable]
SeqIdPtr curId; /*Used to compare seq. coming from different SeqAligns*/
^
cddposutil.c: In function 'CddSetUpSearchInternalByLoc':
cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable]
index, length, length_adjustment=0, last_length_adjustment, min_query_length;
^
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable]
Int4 final_virtual_db_seq=0, final_db_seq=0;
^
cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable]
Uint4 oid_bit, virtual_oid_bit;
^
cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable]
Uint4 oid_bit, virtual_oid_bit;
^
cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable]
Int4 mask_index, virtual_mask_index;
^
cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable]
Int4 mask_index, virtual_mask_index;
^
cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable]
OIDListPtr alias_oidlist;
^
cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable]
Boolean use_private_gilist = FALSE;
^
cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp;
^
cddposutil.c: In function 'CddposReadAlignment':
cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable]
Int4 alignPos, queryOffset, subjectOffset, matchLength;
^
In file included from ../include/cddutil.h:205:0,
from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
In file included from cddposutil.c:131:0:
../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function]
static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
^
../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function]
static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
^
../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function]
static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
^
../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function]
static void CddputMatrixMatrix(FILE *checkFile,
^
../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function]
static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
^
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location);
^
../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function]
static void CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
^
../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function]
static Int4 CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
^
../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
^
../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function]
static Boolean HitYet(Int4Ptr retlist, Int4 index, Int4 i);
^
../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function]
static CharPtr CddFixForXML(CharPtr pc);
^
cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function]
static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
^
cddposutil.c: In function 'CddposComputeSequenceWeights':
cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
posSearch->posSigma[qplace] = intervalSigma;
^
cddposutil.c:829:10: warning: 'Sigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Sigma > 0) {
^
cddposutil.c: In function 'CddposDemographics':
cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wmaybe-uninitialized]
subjectOffset = curSegs->starts[startS] - retrievalOffset;
^
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
^
cddposutil.c:1246:63: note: 'min_query_length' was declared here
index, length, length_adjustment=0, last_length_adjustment, min_query_length;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c
objmime.c: In function 'NcbiMimeAsn1Free':
objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'Data_dataFree':
objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'Data_dataAsnRead':
objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'BiostrucAlignAsnRead':
objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucAlignSeqAsnRead':
objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucSeqAsnRead':
objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucSeqsAsnRead':
objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'SeqAlignData_seq_align_dataFree':
objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead':
objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'BundleSeqsAlignsAsnRead':
objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/mapmime.h:4:0,
from objmime.c:78:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/mapmime.h:4:0,
from objmime.c:78:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/mapmime.h:6:0,
from objmime.c:78:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c:516:10: note: 'choice' was declared here
Uint1 choice;
^
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c:1719:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function 'atd':
thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable]
float hh;
^
thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable]
int rf; /* Reference position for a core element */
^
thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,l,m,n; /* Counters */
^
thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable]
int i,j,k,l,m,n; /* Counters */
^
thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable]
int nrp; /* Number of residue-peptide contacts in motif */
^
thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable]
int nrr; /* Number of residue-residue contacts in motif */
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function 'bwfi':
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wmaybe-uninitialized]
ct=ttb->mx; for(i=0; i<=nt; i++) {
^
thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized]
cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function 'cpal':
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function 'cpll':
thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types */
^
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wmaybe-uninitialized]
cl->rf.t2[k]=r2;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function 'cprl':
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function 'cxei':
thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable]
int ntot, ms;
^
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function 'g':
thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable]
int s0;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function 'salu':
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function 'sgoi':
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function 'slor':
thrdslor.c:90:6: warning: 'mp' may be used uninitialized in this function [-Wmaybe-uninitialized]
int *mp; /* Motif-derived loop length limits */
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function 'slou':
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function 'spea':
thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types in potential */
^
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function 'spel':
thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types in potential */
^
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function 'spni':
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function 'ttb0':
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function 'zsc':
thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable]
int g,gs;
^
thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable]
float tg,tgp,tgm,zsc; /* Energy of shuffled sequence */
^
thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable]
int ps,ms,cs,
^
thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable]
int temp; /* Random index of the query sequence */
^
thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable]
kk,itr,ii,jj; /* Counters */
^
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wmaybe-uninitialized]
ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
^
thrdzsc.c:89:6: warning: 'tls' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlf,tls,dln;
^
thrdzsc.c:89:2: warning: 'tlf' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlf,tls,dln;
^
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c
csim.c: In function 'set_pam_200':
csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces]
2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
^
csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
V[achars[i]][achars[j]]=10*(wgts[i][j]);
^
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'set_pam_file':
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
V[alph[i]][alph[j]]=(Int2)(10*weight);
^
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'big_pass':
csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c: In function 'diff1':
csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[1]];
^
csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts]
{ c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
^
csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
^
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i+1]];
^
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
^
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:893:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
^
csim.c: In function 'locate':
csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[(plist->m1)]];
^
csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG((plist->m1), j, c, p+va[B[j]]) /* diagonal */
^
csim.c:1061:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1062:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1071:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1072:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[B[(plist->n1)]];
^
csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, (plist->n1), c, p+va[A[i]])
^
csim.c:1128:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1129:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1138:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1139:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1144:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
^
csim.c: In function 'small_pass':
csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c: In function 'display':
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (i < M || j < N)
^
csim.c: In function 'SIM':
csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:928:23: note: 'dj' was declared here
register Int4 di, dj; /* end-point associated with d */
^
csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:928:19: note: 'di' was declared here
register Int4 di, dj; /* end-point associated with d */
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c
dust.c: In function 'slpDust.isra.0':
dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp->data.ptrvalue = (Pointer) sintp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c
blast_dust.c: In function 's_SlpDust':
blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp->data.ptrvalue = (Pointer) sintp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c
falign.c: In function 'fbld_table':
falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'bbld_table':
falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rcbld_table':
falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'ex_table':
falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'free_all':
falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = cdiag_prev[l]) {
^
falign.c: In function 'scan':
falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+len2-1-pos]) {
^
falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df=diag_prev[l]) {
^
falign.c: In function 'fscan':
falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'bscan':
falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rfscan':
falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+se2-pos]) {
^
falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+se2-pos]) {
^
falign.c: In function 'trcscan':
falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rclocal':
falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = diag_prev[ocur_diag]) {
^
falign.c: In function 'enterS':
falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (s = findS(f->bgf)) {
^
falign.c: In function 'local':
falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = diag_prev[cur_diag]) {
^
falign.c: In function 'align':
falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
falign.c: In function 'calign':
falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
falign.c: In function 'malign':
falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c
g_any.c: In function 'k_align':
g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts]
va = vv[A[i+1]];
^
g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts]
if (j < J2) c = s + va[B[j+1]];
^
g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts]
b2 = PP[t1][b1];
^
g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts]
t2 = PT[t1][b1];
^
g_any.c: In function 'z_ALIGN':
g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable]
Int4 check_score;
^
g_any.c: In function 'CHECK_SCORE':
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
score = vv[A[++i]][B[++j]] + score;
^
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: At top level:
g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function 'SIM2':
sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable]
CharPtr A, B, compB = NULL;
^
sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable]
SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
^
sim2.c:135:20: warning: 's_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
Change_Loc_Strand(cslp2, s_strand);
^
sim2.c:136:20: warning: 'm_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
Change_Loc_Strand(cslp1, m_strand);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c
sim3.c: In function 'locate':
sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
^
sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c: At top level:
sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function]
static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
^
sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function]
static Int4 get_start_pos(SeqLocPtr slp)
^
sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function]
static Int4 get_current_pos(Int4Ptr pos, Int4 length)
^
sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function]
static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c
sim4.c: In function 'sim4x':
sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while(i1 = sgp->Blist[i].next) {
^
sim4.c: In function 'greedy':
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == 0 && col == 0)
^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == 0)
^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (col == 0)
^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == m && col == n)
^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == m)
^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (col == n)
^
sim4.c: In function 'DISPLAY':
sim4.c:2625:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (a >= ALINE+50 || i >= M && j >= N)
^
sim4.c: At top level:
sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function]
static void S2A(EditScriptPtr head, Int4Ptr S)
^
sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function]
static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
^
sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function]
static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
^
sim4.c: In function 'greedy.isra.12':
sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (m-min_row[back]>=max_row[forth]) {
^
sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (m-min_row[back]>=max_row[forth]) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c
simutil.c: In function 'make_align':
simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
simutil.c: At top level:
simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function]
static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
^
simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function]
static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
^
simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function]
static Boolean is_alu_seq(CharPtr name)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c
sec.c: In function 'Region':
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
diag_score = diag_score + V[seq1[i]][seq2[j]];
^
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:72:37: warning: 'ppj' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define Min(x,y) ((x) <= (y) ? (x) : (y))
^
sec.c:172:20: note: 'ppj' was declared here
Int4 pi, pj, ppi, ppj;
^
sec.c:172:15: warning: 'ppi' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 pi, pj, ppi, ppj;
^
sec.c:405:26: warning: 'ej' may be used uninitialized in this function [-Wmaybe-uninitialized]
c = ((FloatHi)z_ALIGN(seq1-1,seq2-1,bi,bj,ei,ej,LB,RB,V,G,H,S+fk))/DIGIT + (FloatHi)fk + (FloatHi)lk;
^
sec.c:405:26: warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized]
sec.c:405:26: warning: 'bj' may be used uninitialized in this function [-Wmaybe-uninitialized]
sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(LB+bi);
^
sec.c:159:10: warning: 'RB' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr RB;
^
sec.c:158:10: warning: 'LB' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr LB;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function 'find_orf':
tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable]
IntFuzzPtr infrom=NULL, into=NULL;
^
tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable]
IntFuzzPtr infrom=NULL, into=NULL;
^
tfuns.c: At top level:
tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function]
static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c
toasn3.c: In function 'FindOrg':
toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
toasn3.c: In function 'CheckQualsWithComm':
toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toasn3.c: In function 'CheckQuals':
toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toasn3.c: In function 'CountSourceFeat':
toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
toasn3.c: In function 'TASNTrimInternalSemicolons':
toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
CharPtr tmp;
^
toasn3.c: In function 'ImpFeatToProtRef':
toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable]
Boolean lfree = FALSE, partial5, partial3;
^
toasn3.c: In function 'RemovePeptideImpFeats':
toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
ImpFeatPtr ifp;
^
In file included from ../include/asn2ff6.h:142:0,
from toasn3.c:19:
toasn3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function]
static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
^
toasn3.c: In function 'GetOriginalBeforeAdjustment':
toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (last != NULL && last->choice != SEQLOC_INT) /* this is too weird */
^
toasn3.c: In function 'FixNucProtSet':
toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wmaybe-uninitialized]
bseg->annot = sap;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function 'ChkSegset':
toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE;
^
toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
^
toporg.c: In function 'ChkNucProt':
toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE;
^
toporg.c: In function 'StripBSfromParts':
toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
Boolean empty;
^
toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable]
BSMapPtr bsmp;
^
toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr descr, vnp, set_vnp;
^
toporg.c: In function 'MapsToGenref':
toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable]
SeqLocPtr loc;
^
toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
ValNodePtr descr = NULL, head, last, vnp;
^
toporg.c: In function 'FindOldLineage':
toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable]
CharPtr lineage;
^
toporg.c: In function 'StripBadTitleFromProteinProducts':
toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
Uint1 tech;
^
toporg.c: At top level:
toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function]
static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
^
toporg.c: In function 'MergeEquivCitSubs':
toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
alp1 = csp1->authors;
^
toporg.c: In function 'CheckMaps':
toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->to = to;
^
toporg.c:1696:24: note: 'to' was declared here
Int4 from, to;
^
toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->from = from;
^
toporg.c:1696:18: note: 'from' was declared here
Int4 from, to;
^
toporg.c: In function 'ConvertSegSetToDeltaSeq':
toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqMgrClearFeatureIndexes (entityID, NULL);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c
pobutil.c: In function 'build_repeat_feat':
pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable]
Char c='%';
^
pobutil.c: In function 'merge_StdSeg':
pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable]
Int4 start_1, stop_1, start_2, stop_2;
^
pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable]
Int4 overlap = -1;
^
pobutil.c: In function 'AluFeat':
pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable]
Pointer my_userdata;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c
stsutil.c: In function 'InitSTSSearch_r':
stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable]
Int4 StsCount=0;
^
stsutil.c: In function 'GetSTSEntry':
stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable]
CharPtr p;
^
stsutil.c: In function 'STSCalculateHash':
stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts]
if ((j = HashCode[*p++]) < 0)
^
stsutil.c: In function 'STSReverse':
stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts]
if ((*t = ComplCode[*s]) == 0)
^
stsutil.c: In function 'InitHashTable':
stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable]
CharPtr gb_uid, sts_uid;
^
stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable]
CharPtr gb_uid, sts_uid;
^
stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable]
Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
^
stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable]
Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
^
stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable]
Int4 LineLength, error= FALSE;
^
stsutil.c: At top level:
stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function]
static void STSHashInitFree(STSHashInitPtr sts)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c
suggadj.c: In function 'score_possible_splice_sites':
suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
^
suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
^
suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
^
suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
^
suggadj.c: In function 'check_split_codon':
suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts]
val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
^
suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-2]]*4+
^
suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-1]];
^
suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts]
val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
^
suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[left_ends+2]] * 4 +
^
suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-1]];
^
suggadj.c: In function 'overlapping_fixer':
suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val = vx[seq_or_rev[left_exon_ends]]*16 +
^
suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_exon_starts-1]];
^
suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
^
suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c
suggest.c: In function 'get_frames':
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
^
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c: At top level:
suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function]
fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
^
suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function]
static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c
suggslp.c: In function 'MakeReverseSequence':
suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts]
*t++ = r[*--s];
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c
blast.c: In function 'BlastReevaluateWithAmbiguities':
blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable]
Uint1Ptr query_start, query_end, subject_real_start=NULL;
^
blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable]
Int4 context, hspcnt, hspcnt_max, index, index1, status;
^
blast.c: In function 'BlastGetVirtualOIDList':
blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (virtual_oidlist = rdfp_chain->oidlist) {
^
blast.c: In function 'BlastGetDbChunk':
blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
^
blast.c: In function 'BlastCreateQueryDNAP':
blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable]
Uint1 strand_option;
^
blast.c: In function 'BlastWordFinder_contig':
blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
register Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c: In function 'BlastWordExtend':
blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
BLAST_Score leftsum, rightsum, rightscore, leftscore;
^
blast.c: In function 'BlastNewWordExtend':
blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
BLAST_Score leftsum, rightsum, rightscore, leftscore;
^
blast.c: In function 'BlastNtWordFinder_mh':
blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
register Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable]
Int4 s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
^
blast.c: In function 'BlastNtWordFinder':
blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c: In function 'BlastSaveCurrentHitlist':
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if( hitlist_max > 1 )
^
blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
Int4 query_length;
^
blast.c: In function 'SumHSPEvalue':
blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable]
Int4 gap_size, num, subject_length;
^
blast.c: In function 'link_hsps':
blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable]
Boolean frame_change, linked_set, ignore_small_gaps;
^
blast.c: In function 'blastMergeFilterLocs':
blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (dup_slp->choice == SEQLOC_PACKED_INT) {
^
blast.c: In function 'BlastLinkHsps':
blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->current_hitlist = orig_hitlist;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c
blastutl.c: In function 'BlastSeqLocFilterEx':
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
stop_timer("after repeat filtering");
^
blastutl.c: In function 'BlastPreliminaryGappedScore':
blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
Int4 index, max_offset = 0, query_length, min_score;
^
blastutl.c: In function 'BlastGetGappedScore':
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
stop_timer("after BlastGappedScoreInternal");
^
blastutl.c: In function 'BlastNtFindWords':
blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = MIN(end, len-initial_wordsize);
^
blastutl.c: In function 'BlastFindWords':
blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
stop = MIN(stop, len);
^
blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
^
blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score+first_score;
^
blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'BlastNewFindWords_Old':
blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += MtrxScorePosSearch(search->sbp,
^
blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score+first_score;
^
blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'BlastNewFindWordsEx':
blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += posMatrix[offset+index2][*(words+index2)];
^
blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score + first_score;
^
blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback':
blastutl.c:9377:56: warning: 'seqalign_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqalign_array[index2] =
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c
blastool.c: In function 'OOFBlastHSPGetNumIdentical':
blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable]
Int2 context;
^
blastool.c: In function 'BlastCreateVirtualOIDList':
blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL;
^
blastool.c: In function 'BlastInsertList2Heap':
blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = 2*query_length - hsp->query_offset;
^
blastool.c: In function 'BlastFreeHeap':
blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = 2*query_length - hsp->query_offset;
^
blastool.c: In function 'BLASTFilterOverlapRegions':
blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wmaybe-uninitialized]
tail->next = seqalign;
^
blastool.c: In function 'BlastPrintAlignInfo':
blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap->next = SeqAlignNew();
^
blastool.c: In function 'MegaBlastPrintAlignInfo':
blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(subject_seq_buffer);
^
blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(query_seq_buffer);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c
blastconcat.c: In function 'BlastMakeFakeBspConcat':
blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
gapxdrop.c: In function 'ALIGN_EX':
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s == 1)
^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s == 2)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c
bandalg0.c: In function 'g_band0_align':
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(leftd >= 1)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg1.c: In function 'g_band1_align':
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(leftd >= 1)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c
bandalg2.c: In function 'gb_linear_align':
bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable]
register Int4 match, misma;
^
bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable]
register Int4 match, misma;
^
bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable]
register Uint1 AA;
^
bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (rmid > Y - X) {
^
bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c
bandalg3.c: In function 'gband_linear_qgap':
bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg3.c:314:41: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if(Y != rightd) _INS(rightd-Y)
^
bandalg3.c:185:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg3.c:313:5: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M) _DEL(M - X)
^
bandalg3.c:185:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c
bandalg4.c: In function 'g_band4_align_small':
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 1)
^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 2)
^
bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable]
Int4 band, j;
^
bandalg4.c: In function 'g_band4_align':
bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M || Y != N) regA = regB = 1;
^
bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M || Y != N) regA = regB = 1;
^
bandalg4.c:545:7: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
FP[k] = r;
^
bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
k = (t=data->state[i][j]) %5;
^
bandalg4.c:640:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg4.c:824:24: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
k = (t=data->state[i][j]) %5;
^
bandalg4.c:640:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg5.c: In function 'g_band5_align':
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 1)
^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 2)
^
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:320:32: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Y != rightd) _INS(rightd - Y);
^
bandalg5.c:146:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg5.c:319:6: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (X != M) _DEL(M - X);
^
bandalg5.c:146:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c
bandalgn.c: In function 'ExtendSeqAlign':
bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
bandalgn.c: In function 'CC_ExtendSeqAlign':
bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
bandalgn.c: At top level:
bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable]
static Uint1 HSblastna_to_ncbi4na[] = { 1, /* A, 0 */
^
bandalgn.c: In function 'LocalBandToEditBlock':
bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wmaybe-uninitialized]
lbsp->edit_block = edit_block;
^
bandalgn.c: In function 'SetLowUpFromBlast':
bandalgn.c:1053:7: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (maxsc < val) {
^
bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (maxlen < alnlen) {
^
bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wmaybe-uninitialized]
maxy = MAX(maxy,maxdi_up);
^
bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wmaybe-uninitialized]
miny = MIN(miny,mindi_low);
^
bandalgn.c:1062:10: warning: 'maxdi' may be used uninitialized in this function [-Wmaybe-uninitialized]
maxy = maxdi + width;
^
bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wmaybe-uninitialized]
miny = mindi - width;
^
bandalgn.c: In function 'GetAlignExtremes':
bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*yy2 = y2;
^
bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*yy1 = y1;
^
bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*xx2 = x2;
^
bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*xx1 = x1;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c
blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable]
static Nlm_FloatHi blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
^
blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable]
static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
^
blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable]
static BLAST_LetterProb Dayhoff_prob[] = {
^
blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable]
static BLAST_LetterProb Altschul_prob[] = {
^
blastkar.c: In function 'BLAST_ScoreBlkNew':
blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sbp->alphabet_size = sctp->num;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c
actutils.c: In function 'SlideToHit':
actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable]
Boolean inIsland, done;
^
actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable]
Boolean inIsland, done;
^
actutils.c: In function 'ResolveSpinConflict':
actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable]
Boolean row1_conflict = FALSE, row2_conflict = FALSE;
^
actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable]
Boolean row1_conflict = FALSE, row2_conflict = FALSE;
^
actutils.c: In function 'ACT_FindBestAlnByDotPlot':
actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function]
static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
^
actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function]
static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
^
actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function]
static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
^
actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function]
static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
^
actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function]
static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
^
actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function]
static void DumpAlignments (SeqAlignPtr salp)
^
actutils.c: In function 'GetOldBlastAlignmentPiece':
actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(program);
^
actutils.c: In function 'ACT_FindPeakScores':
actutils.c:1342:31: warning: 'ats_newprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
ats_newprev->next = ats_new;
^
actutils.c:1321:28: warning: 'ats_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
ats_prev->next = ats;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c
posit.c: In function 'posDemographics':
posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
Int4 numseq, numSeqAligns; /*number of matching sequences and SeqAligns*/
^
posit.c: In function 'posFreqsToMatrix':
posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4u)) + (sizetype)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
^
posit.c: In function 'posComputePseudoFreqs':
posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
^
posit.c: In function 'WposComputation':
posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
Int4 i, numSeqAligns, numseq, qlength;
^
posit.c: In function 'posPrintInformation':
posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable]
Int4 querySize;
^
posit.c: In function 'posFindAlignmentDimensions':
posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wmaybe-uninitialized]
testCountSeqs++;
^
posit.c: In function 'posComputeSequenceWeights':
posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
posSearch->posSigma[qplace] = intervalSigma;
^
posit.c:1424:11: warning: 'Sigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Sigma > 0) {
^
posit.c: In function 'posReadCheckpoint':
posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (i < pssm->numColumns || j < pssm->numRows) {
^
posit.c:2702:11: note: 'j' was declared here
Int4 i, j, c;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c
lookup.c: In function 'lookup_get_memory':
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63);
^
In file included from ../include/blastdef.h:922:0,
from ../include/blast.h:470,
from lookup.c:309:
lookup.c: In function 'MegaBlastBuildLookupTable':
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1047:35: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1051:35: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1078:31: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq) | bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1082:31: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq) | bit0;
^
lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable]
register Int4 ecode, extra_code;
^
lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (word_weight >= 12) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c
readdb.c: In function 'readdb_parse_db_names':
readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (**filenames == '"')
^
readdb.c: In function 's_GetBlastDirInfo':
readdb.c:2729:32: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
memset(blast_dir, 0, sizeof(blast_dir));
^
readdb.c: In function 'FindBlastDBFileEx':
readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable]
CharPtr buffer, buffer1, envp = NULL;
^
readdb.c: In function 'readdb_new_internalEx':
readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable]
CharPtr charptr, envp = NULL;
^
readdb.c: In function 'readdb_get_link':
readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable]
Boolean loaded_new = FALSE;
^
readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable]
ReadDBFILEPtr last, last_used, rdfp_var;
^
readdb.c: In function 'readdb_check_oid':
readdb.c:4891:38: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses]
if (rdfp_var->start <= oid <= rdfp_var->stop)
^
readdb.c: In function 'readdb_seqid2fasta':
readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable]
Int4 dummy_gi = 0; /* Not used, should have been handled above. */
^
readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable]
CharPtr chptr = NULL;
^
readdb.c: In function 'FDBuildOldStyleDefline':
readdb.c:6361:33: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
MemSet(defline, '\0', sizeof(defline));
^
readdb.c: In function 'FDBLoadMembershipsTable':
readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable]
const char* fn_name = NULL;
^
readdb.c: In function 'SeqIdE2Index':
readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp, ptr=NULL;
^
readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable]
Uint1 tmptype;
^
readdb.c: In function 'SeqIdSetE2Index':
readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable]
SeqIdPtr oldanp;
^
readdb.c: In function 'Fastacmd_Search_ex':
readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable]
Int4 guess_gi = -1;
^
readdb.c: In function 'DumpOneSequence':
readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable]
Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
^
In file included from readdb.c:2055:0:
readdb.c: At top level:
../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable]
static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
^
../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable]
static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
^
In file included from ../include/sqnutils.h:51:0,
from readdb.c:2062:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function]
readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
^
readdb.c: In function 'readdb_get_taxonomy_names':
readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wmaybe-uninitialized]
ufp_last->next = ufp;
^
readdb.c: In function 'readdb_get_descriptor':
readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_defline_length += StringLen(defline) + StringLen(id_buf);
^
readdb.c: In function 'GetAccList':
readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wmaybe-uninitialized]
AccListLast->next = AccListTmp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c
ncbisam.c: In function 'ISAMMakeStringIndex':
ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable]
Int4 file_pos = ftell(data->db_fd);
^
ncbisam.c: In function 'ISAMInitSearch':
ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable]
Int4 reserved2;
^
ncbisam.c: In function 'ISAMMakeIndex':
ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
^
ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint4Ptr KeyInfo, KeySamples;
^
ncbisam.c: In function 'ISAMCreateDatabase':
ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(prevterm);
^
ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wmaybe-uninitialized]
ErrLogPrintf("Invalidly formatted database. Database creation "
^
ncbisam.c: In function 'NISAMSearch':
ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wmaybe-uninitialized]
KeyDataPageStart = MemFree(KeyDataPageStart);
^
ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wmaybe-uninitialized]
KeyPageStart = MemFree(KeyPageStart);
^
ncbisam.c:1750:36: warning: 'KeyPage' may be used uninitialized in this function [-Wmaybe-uninitialized]
Key = SwapUint4(KeyPage[current]);
^
ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wmaybe-uninitialized]
*Start = SampleNum * data->PageSize;
^
ncbisam.c:1618:27: note: 'SampleNum' was declared here
Int4 Start = 0, Stop, SampleNum;
^
ncbisam.c: In function 'SISAMSearch':
ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c
ncbisort.c: In function 'SORTFracCompare':
ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int]
register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
^
ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int]
register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
^
In file included from ncbisort.c:83:0:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function]
static void inthandler(int i);
^
ncbisort.c: In function 'SORTMergeFPS':
ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (savealloc < lines[ord[0]].lines[cur[ord[0]]].length + 1) {
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c
salign.c: In function 'BandAlignTwoSeqLocsFunc':
salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable]
Boolean is_prot;
^
salign.c: In function 'SortBlastHits':
salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable]
totalvalmax = INT4_MAX,
^
salign.c: In function 'link_solution':
salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable]
Boolean first = TRUE;
^
salign.c: In function 'SortBlastHits':
salign.c:455:22: warning: 'salpdup' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignSetFree (salpdup);
^
salign.c: In function 'TranslateSeqLoc.constprop.5':
salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return slpp;
^
salign.c: In function 'BlastTwoSeqLocs':
salign.c:591:18: warning: 'strand2' may be used uninitialized in this function [-Wmaybe-uninitialized]
sit->strand = strand2;
^
salign.c:589:18: warning: 'strand1' may be used uninitialized in this function [-Wmaybe-uninitialized]
sit->strand = strand1;
^
salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.4':
salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wmaybe-uninitialized]
tail->next = salptmp;
^
salign.c:1408:15: note: 'tail' was declared here
tail,
^
salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
^
salign.c:1301:30: note: 'stop' was declared here
Int4 start, start1, stop;
^
salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
^
salign.c:1301:22: note: 'start1' was declared here
Int4 start, start1, stop;
^
salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
^
salign.c:1229:30: note: 'stop' was declared here
Int4 start, start1, stop;
^
salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
^
salign.c:1229:22: note: 'start1' was declared here
Int4 start, start1, stop;
^
salign.c: In function 'SeqLocListToSeqAlign':
salign.c:1672:23: warning: 'slptmp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
salpnew = BandAlignTwoSeqLocs (master_slp, slp, msp);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c
salptool.c: In function 'MergeTwoDspBySIM4':
salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable]
Boolean has_overlap;
^
salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int4 gap=0,gap_1, gap_2;
^
In file included from ../include/sqnutils.h:51:0,
from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salptool.c:14:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
static void SeqAnnotWrite(SeqAlignPtr align)
^
salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function]
static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
^
salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function]
static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
^
salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function]
static Int4 getlengthforid (SeqIdPtr sip)
^
salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function]
static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
^
salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function]
static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c
urkepi.c: In function 'PredictEpiI0':
urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*seq] += 1;
^
urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
^
urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*seq] += 1;
^
urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
^
urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
^
urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*(seq-window)] -= 1;
^
urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
^
urkepi.c: In function 'OptimizeEpiComp':
urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts]
bin[seq[i]] += 1;
^
urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts]
bin[seq[i]] += 1;
^
urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts]
if (fbin[seq[i]] > expect)
^
urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts]
if (fbin[seq[i]] > expect)
^
urkepi.c: In function 'OptimizeEpiHP':
urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[j]] += 1;
^
urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[j]] += 1;
^
urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] -= 1;
^
urkepi.c: In function 'OptimizeEpiProbFunc':
urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] += 1;
^
urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] += 1;
^
urkepi.c: In function 'FilterEpi':
urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wmaybe-uninitialized]
cfap->right = right;
^
urkepi.c:936:56: note: 'right' was declared here
Int4 i, n, j, k, start, stop, loop, fact, left, right;
^
urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wmaybe-uninitialized]
cfap->left = left;
^
urkepi.c:936:50: note: 'left' was declared here
Int4 i, n, j, k, start, stop, loop, fact, left, right;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c
urkdust.c: In function 'DustMe_h':
urkdust.c:196:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
^
urkdust.c: In function 'DustForGraph':
urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable]
DustRegionPtr drphead;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c: In function 'getprob':
seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wmaybe-uninitialized]
ans = ans1 + ans2 - totseq;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function]
static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
^
urkcnsrt.c: In function 'Scan3Frames':
urkcnsrt.c:1312:34: warning: 'length' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 i, n, start, stop, length, chunk;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c
pseed3.c: In function 'SeedPruneHitsFromSeedReturn':
pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable]
DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
^
pseed3.c: In function 'seedEngineCore':
pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
^
pseed3.c: In function 'output_hits':
pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable]
Int4 posBaseIndex; /*loop index for copying pos results arrays*/
^
pseed3.c: In function 'init_order':
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->order[seedSearch->pchars[i]] = i;
^
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->charMultiple[i] = 0;
^
pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts]
if (seedSearch->standardProb[i] > seedepsilon) {
^
pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts]
matrixRow = matrix[i];
^
pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts]
if (seedSearch->standardProb[j] > seedepsilon)
^
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
^
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->charMultiple[i] = rowSum;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c
pattern1.c: In function 'init_pattern':
pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability = seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability += seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c: In function 'find_hitsS_DNA':
pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
^
pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
^
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type]
static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
^
pattern1.c: In function 'and':
pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (result[i] = (a[i] & b[i]))
^
pattern1.c: In function 'align':
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (leftd >= 1)
^
pattern1.c: In function 'get_patL':
pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
*end = wordIndex*BITS_PACKED_PER_WORD+j;
^
pattern1.c: In function 'align':
pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wmaybe-uninitialized]
score = (CDrow-1)->CC;
^
pattern1.c: In function 'get_patLL':
pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (j = 0; j < pos; j+= wordIndex) {
^
pattern1.c: In function 'init_pattern':
pattern1.c:192:11: warning: 'tj' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 tj; /*temporary copy of j*/
^
pattern1.c: In function 'align_of_pattern':
pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized]
local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1],
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c
impatool.c: In function 'IMPALAPrintHelp':
impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
ret_buffer = MemFree(ret_buffer);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c
vecscrn.c: In function 'VSPrintOverviewFromSeqLocs':
vecscrn.c:1081:11: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (tmp->next)
^
vecscrn.c: In function 'VSPrintListFromSeqLocs':
vecscrn.c:1191:8: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp = tmp->next;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c
mblast.c: In function 'BioseqMegaBlastEngineCore':
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
^
mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable]
SeqAlignPtr seqalign, PNTR seqalignp;
^
mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc':
mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable]
Nlm_FloatHi avglen;
^
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp;
^
mblast.c: In function 'MegaBlastWordFinder_disc_1b':
mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable]
register Int4 s_off, ecode, mask, q_off, extra_code;
^
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap->next = seqalign_var;
^
mblast.c: In function 'MegaBlastWordFinder_disc':
mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
^
mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
^
mblast.c: In function 'MegaBlastWordFinder':
mblast.c:2620:54: warning: 'ecode2' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
^
mblast.c:2373:17: note: 'ecode2' was declared here
Int4 ecode1, ecode2;
^
mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
^
mblast.c:2373:9: note: 'ecode1' was declared here
Int4 ecode1, ecode2;
^
mblast.c: In function 'MegaBlastGapInfoToSeqAlign':
mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignPtr seqalign, seqalign_var, sap;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c
rpsutil.c: In function 'RPSBlastSearchLight':
rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable]
Boolean found_score = FALSE;
^
In file included from ../include/sqnutils.h:51:0,
from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
rpsutil.c: In function 'RPSAlignTraceBack':
rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->sbp->posMatrix = posMatrix;
^
rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
^
rpsutil.c: In function 'RPSCalcEValue':
rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->sbp->posMatrix = posMatrix;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function 'Kappa_SequenceGetProteinRange':
kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable]
int i;
^
kappa.c: At top level:
kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default]
Kappa_SequenceGetRange,
^
kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c
xmlblast.c: In function 'PSIXmlInit':
xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
xmlblast.c: In function 'BXMLGetSeqLineForStdSeg':
xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wmaybe-uninitialized]
residue1 = AAForCodon(codon, master_is_translated ? genetic_code2 : genetic_code1);
^
xmlblast.c: In function 'BXMLSeqAlignToHits':
xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
^
xmlblast.c: In function 'SeqAlignToHits':
xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wmaybe-uninitialized]
hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
bxmlobj.c: In function 'BlastOutputAsnRead':
bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'ParametersAsnRead':
bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
bxmlobj.c: In function 'IterationAsnRead':
bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'StatisticsAsnRead':
bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
bxmlobj.c: In function 'HitAsnRead':
bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'HspAsnRead':
bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c
dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces]
4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3, -2, 0, -2, -1, 0, -4,
^
dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces]
dotseq.c: In function 'DOT_BuildPLookup':
dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable]
Boolean EXACTMATCH, found_ambig, saved_index = FALSE;
^
dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable]
Int4 threshold=13; /* one-hit heuristics T must be at least 13*/
^
dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable]
Int4 index = 0;
^
dotseq.c: In function 'DOT_ComputeHits':
dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable]
Uint1Ptr s, subject0, s_end, q_end;
^
dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable]
Boolean saved_index = FALSE;
^
dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable]
Int4 threshold=13;
^
dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot':
dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dotseq.c: In function 'DOT_BuildHitList':
dotseq.c:1310:19: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 index;
^
dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOTDiagPtr PNTR hitlist;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c
spidey.c: In function 'SPI_PrintResult':
spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
Int4 offset;
^
spidey.c: In function 'SPI_AlnSinglemRNAToPieces':
spidey.c:2850:19: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if (spot->from == spot->to == 0)
^
spidey.c: In function 'SPI_FillInLastmRNAHoles':
spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable]
Boolean internal;
^
spidey.c: In function 'SPI_FindBestAlnByDotPlot':
spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
spidey.c: In function 'SPI_ConnectAlnPieces':
spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable]
SPI_FragPtr PNTR tmparray;
^
spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable]
SPI_FragPtr sfpprev;
^
spidey.c: In function 'SPI_AdjustSplicesInPieces':
spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable]
Boolean minus;
^
spidey.c: In function 'SPI_CheckMrnaOrder':
spidey.c:10292:35: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if ((ival->strand == Seq_strand_plus == ival2->strand
^
spidey.c:10296:38: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
|| (ival->strand == Seq_strand_minus == ival2->strand
^
spidey.c:10309:35: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if ((ival->strand == Seq_strand_plus == ival2->strand
^
spidey.c:10311:38: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
|| (ival->strand == Seq_strand_plus == ival2->strand
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/spidey.h:103,
from spidey.c:259:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
spidey.c: In function 'SPI_GetProteinFrommRNA':
spidey.c:9771:22: warning: 'c3start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 2+3*c3start;
^
spidey.c:9765:22: warning: 'c2start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 1+3*c2start;
^
spidey.c:9759:20: warning: 'c1start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 3*c1start;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c
motif.c: In function 'MOT_FindPolyA':
motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1 buf[MOT_WINSIZE];
^
motif.c: In function 'MOT_FindKozak':
motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1 buf[MOT_WINSIZE];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/motif.h:48,
from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
blfmtutl.c: In function 'BlastPrintTabularResults':
blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (--alignments_count < 0)
^
blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_end += s_shift;
^
blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_start += s_shift;
^
blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
q_end += q_shift;
^
blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
q_start += q_shift;
^
blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (SeqIdComp(query_id, old_query_id) != SIC_YES) {
^
blfmtutl.c: In function 'BlastSetUserErrorString':
blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (title[index] == NULLB || title[index] == ' ')
^
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c
gcc -DWIN_GIF -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
ncbidrwg.c: In function 'Nlm_ClearRgn':
ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool;
^
ncbidrwg.c: In function 'Nlm_DiffRgn':
ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool3;
^
ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_XorRgn':
ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool3;
^
ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_EqualRgn':
ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_EmptyRgn':
ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool;
^
ncbidrwg.c: In function 'Nlm_CopyPixmap':
ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable]
Nlm_Int2 height;
^
ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable]
Nlm_Int2 width;
^
ncbidrwg.c: In function 'Nlm_GetColorRGB':
ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (Nlm_Uint4)i;
^
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
Int2 rsult = 0;
^
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
^
algorend.c: In function 'RenderObject':
algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c: In function 'RenderLabel':
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent;
^
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
PMAD pmad0, pmad1, pmad2, pmad3;
^
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
PMAD pmadFrom = NULL;
^
algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
int iMenu;
^
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
Byte bReservedThis = 0;
^
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
PMBD pmbdThis = NULL;
^
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
PDNMM pdnmmThis = NULL;
^
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
Int2 i = 0;
^
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
Int2 Cn3d_LayerNow_sofar = 0;
^
algorend.c: In function 'Do3DOrigin':
algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable]
FloatLo fTo[3];
^
algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable]
FloatLo fFrom[3];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
static Boolean Cn3d_CopyToNode = FALSE;
^
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
static void LabelGroupOnOffProc(GrouP g)
^
algorend.c: In function 'RenderLabel':
algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddText3D(pic, (Segment3D) paldPrim->pGraphic, (BigScalar) 0,
^
algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fZCen += fZt / l;
^
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYCen += fYt / l;
^
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXCen += fXt / l;
^
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c: In function 'MasterChangeRenderProc.isra.1':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
pars->SolventRender = k;
^
algorend.c: In function 'RenderObject':
algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddCylinder3D(pic, NULL, (BigScalar) pmodThis,
^
algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c: In function 'Do3DOrigin':
algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddLine3D(p3d, NULL, (BigScalar) 0, Cn3d_LayerNow,
^
algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
Int4 iBioseq = 0;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
BiostrucAlignSeqPtr pbsasThis = NULL;
^
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from cn3dopen.c:413:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
static WindoW Cn3D_wOpen;
^
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bOpenBrowse;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(am_guess_numrows(salp) > 2) return sap;
^
cn3dopen.c:513:15: note: 'salp' was declared here
SeqAlign *salp;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr pbsfThis;
^
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdSlave = NULL, pmsdMaster = NULL;
^
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
Boolean iCn3d = TRUE, FirstSlave = FALSE;
^
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from cn3dsave.c:165:0:
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnmime.h12";
^
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dsave.c:171:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bFeatOn;
^
cn3dsave.c: In function 'Cn3D_GetSubSet.isra.1':
cn3dsave.c:289:24: warning: 'isep' may be used uninitialized in this function [-Wmaybe-uninitialized]
isep->next = SeqEntryNew();
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 */
^
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Viewer3DViewer':
cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
Int2 iCount = 0;
^
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
PMMD pmmdThis = NULL;
^
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp = NULL;
^
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iLabelCtrl = NULL;
^
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iModelCtrl = NULL;
^
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
static void Cn3D_ZoomCB(IteM i)
^
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
static void Cn3D_MoveCB(IteM i)
^
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
static void HLatom_MA(MAPtr ma,
^
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
static void HLmolecule_MA(MAPtr ma,
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omudp = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
^
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
Byte MainAtom = 0;
^
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
PALD paldThis = NULL;
^
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
PVNAL pvnalThis = NULL;
^
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
PMAD pmadThis = NULL;
^
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
PDNMG pdnmgThis = NULL;
^
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
PMGD pmgd = NULL;
^
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
SeqIdPtr sipThis = NULL;
^
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
PVNMO pvnmoThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
PARS parsThis = NULL;
^
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
^
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
Int4 val = 0;
^
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
PrompT ppt12, ppt13, ppt14;
^
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
^
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
Int2 iMol = 0, iMolCurrent = 0;
^
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
PDNMM pdnmmHead = NULL;
^
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
static PopuP Cn3D_pupModelStyleItem;
^
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
static ButtoN bResetFeatureTitle;
^
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
^
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wmaybe-uninitialized]
rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from seqcons.c:115:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from seqcons.c:116:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
algorend.c: In function 'Cn3D_SetOGLFont':
algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable]
currentUnderlined = FALSE;
^
algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable]
static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
^
algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable]
static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
^
algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable]
static Nlm_Int2 currentIndex = -1, currentSize = -1;
^
algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable]
static Nlm_Int2 currentIndex = -1, currentSize = -1;
^
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
Int2 rsult = 0;
^
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
^
algorend.c: In function 'MasterChangeLabelsProc':
algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable]
Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
^
algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable]
Int2 i, k, nameval;
^
algorend.c: In function 'ResetLabelCtrls':
algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable]
Int2 i, val, style, size, termStyle;
^
algorend.c: In function 'LabelControls':
algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable]
PrompT ppt10, ppt11;
^
algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
^
algorend.c: In function 'Cn3D_SetQualityFromAppParams':
algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable]
int i;
^
algorend.c: In function 'OGL_Quality':
algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable]
Nlm_PrompT bp, p, q;
^
algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable]
Nlm_PrompT bp, p, q;
^
algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable]
Nlm_PrompT bp, p, q;
^
algorend.c: In function 'RenderControls':
algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt5;
^
algorend.c: In function 'RenderObject':
algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable]
Int4 iCylRadius;
^
algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable]
Int4 i = 0;
^
algorend.c: In function 'RenderLabel':
algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable]
PALD paldPrim = NULL;
^
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent;
^
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
PMAD pmad0, pmad1, pmad2, pmad3;
^
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
PMAD pmadFrom = NULL;
^
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
int iMenu;
^
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
Byte bReservedThis = 0;
^
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
PMBD pmbdThis = NULL;
^
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
PDNMM pdnmmThis = NULL;
^
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
Int2 i = 0;
^
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
Int2 Cn3d_LayerNow_sofar = 0;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
static Boolean Cn3d_CopyToNode = FALSE;
^
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
static void LabelGroupOnOffProc(GrouP g)
^
algorend.c: In function 'MasterChangeRenderProc':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
pars->SolventRender = k;
^
algorend.c: In function 'RenderLabel':
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fZCen += fZt / l;
^
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYCen += fYt / l;
^
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXCen += fXt / l;
^
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
Int4 iBioseq = 0;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
BiostrucAlignSeqPtr pbsasThis = NULL;
^
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from cn3dopen.c:413:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
static WindoW Cn3D_wOpen;
^
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bOpenBrowse;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(am_guess_numrows(salp) > 2) return sap;
^
cn3dopen.c:513:15: note: 'salp' was declared here
SeqAlign *salp;
^
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
cn3dsave.c: In function 'Cn3D_AddMatrix':
cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr pbsfThis;
^
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdSlave = NULL, pmsdMaster = NULL;
^
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
Boolean iCn3d = TRUE, FirstSlave = FALSE;
^
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from cn3dsave.c:165:0:
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnmime.h12";
^
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dsave.c:171:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bFeatOn;
^
cn3dsave.c: In function 'Cn3D_GetSubSet.isra.1':
cn3dsave.c:289:24: warning: 'isep' may be used uninitialized in this function [-Wmaybe-uninitialized]
isep->next = SeqEntryNew();
^
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 */
^
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Cn3D_Default_HLColor':
cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c: In function 'Cn3D_RedrawEx':
cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable]
DDV_ColorCell iColor;
^
cn3dwin.c: In function 'fnPreCHLresidue':
cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
Int2 iCount = 0;
^
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
PMMD pmmdThis = NULL;
^
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp = NULL;
^
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave = NULL;
^
cn3dwin.c: In function 'Cn3DWin':
cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration]
Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable]
static Uint2 Cn3D_Vy, Cn3D_Rx;
^
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iLabelCtrl = NULL;
^
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iModelCtrl = NULL;
^
cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable]
static GrouP Cn3D_gViewer;
^
cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable]
static GrouP Cn3D_gViewCtrl;
^
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
static void Cn3D_ZoomCB(IteM i)
^
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
static void Cn3D_MoveCB(IteM i)
^
cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function]
static void Cn3D_Default_BgColor(IteM i)
^
cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function]
static void Cn3D_BgColor(IteM i)
^
cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function]
static void Cn3D_Default_HLColor(IteM i)
^
cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function]
static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
^
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
static void HLatom_MA(MAPtr ma,
^
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
static void HLmolecule_MA(MAPtr ma,
^
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omudp = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
^
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
Byte MainAtom = 0;
^
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
PALD paldThis = NULL;
^
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
PVNAL pvnalThis = NULL;
^
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
PMAD pmadThis = NULL;
^
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
PDNMG pdnmgThis = NULL;
^
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
PMGD pmgd = NULL;
^
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
SeqIdPtr sipThis = NULL;
^
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
PVNMO pvnmoThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
cn3dshim.c: In function 'Cn3D_Size':
cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis;
^
cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave;
^
cn3dshim.c: In function 'Cn3D_SizeCB':
cn3dshim.c:391:36: warning: iteration 2u invokes undefined behavior [-Waggressive-loop-optimizations]
BoundBox->x[i] = pflvDataThis[i / (int) 2];
^
cn3dshim.c:390:17: note: containing loop
for (i = 0; i < 6; i++) {
^
cn3dshim.c:396:69: warning: iteration 1u invokes undefined behavior [-Waggressive-loop-optimizations]
if (pflvDataThis[i / (Nlm_Int4) 2] < BoundBox->x[i])
^
cn3dshim.c:395:17: note: containing loop
for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
^
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
PARS parsThis = NULL;
^
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable]
FALSE, TopOn = FALSE;
^
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
^
cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable]
Int2 i = 0, k = 0, nameval = 0;
^
cn3dstyl.c: In function 'ModelSetLabelCtrls':
cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable]
Int2 i = 0, val = 0, style = 0, size = 0;
^
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
Int4 val = 0;
^
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
PrompT ppt12, ppt13, ppt14;
^
cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable]
ppt11;
^
cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
^
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
Int2 iMol = 0, iMolCurrent = 0;
^
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
PDNMM pdnmmHead = NULL;
^
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
static PopuP Cn3D_pupModelStyleItem;
^
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
static ButtoN bResetFeatureTitle;
^
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
^
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wmaybe-uninitialized]
rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
^
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from seqcons.c:115:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from seqcons.c:116:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c
blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx':
blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable]
Boolean rm_hsps = FALSE;
^
blast_hits.c: At top level:
blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function]
static int s_SortHspWrapEvalue(const void *x, const void *y)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c
blast_stat.c: In function 's_BlastGumbelBlkNew':
blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable]
Blast_GumbelBlk* retv;
^
blast_stat.c: At top level:
blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
static double s_CalculateNormalProbability(double x_, double eps_)
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function 'Blast_TracebackFromHSPList':
blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wmaybe-uninitialized]
Blast_HSPInit(qs, qe, ss, se, qs, ss,
^
blast_traceback.c:365:22: note: 'qe' was declared here
Int4 qs, qe, ss, se, es, ee, os;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c
blast_format.c: In function 's_MBXmlInit':
blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
blast_format.c: In function 's_LoadMatrix':
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
^
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function 'Blast_PrelimSearchThreadRun':
blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status = 0;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c
blast_seq.c: In function 's_SeqLocFillSequenceBuffer':
blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable]
Uint1 seq_code, strand;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped':
blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable]
Int4 hsp_cnt, index2, hspset_cnt_old;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
seqsrc_readdb.c: In function 's_ReaddbGetNextChunk':
seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable]
Uint4 real_readdb_entries;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function 's_TwoSeqBasicFillOptions':
twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable]
Int2 status = 0;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/algo/blast/api/twoseq_api.h:41,
from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c
dust_filter.c: In function 's_GetFilteringLocations':
dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable]
BlastSeqLoc* filter_slp_rev = NULL;
^
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
gcc -c -g -O2 -Wall -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
hspfilter_queue.c: In function 's_BlastHSPQueueInit':
hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable]
BlastHSPQueueData * q_data = data;
^
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
gcc -o asntool -g -O2 -Wall -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
asncode.c: In function 'AsnCode_SETOF_base_or_user':
asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable]
Int2 real_type;
^
asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
CharPtr valslot;
^
asncode.c: In function 'userobj_and_basetype_SETOF':
asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
CharPtr valslot;
^
asncode.c: In function 'AsnCodeIsReallyChoice':
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (now_atp)
^
asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart':
asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable]
CharPtr obj_use = which_node->obj_name;
^
asncode.c: In function 'AsnCodeIter':
asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (iter->atp != NULL)
^
asncode.c: In function 'AsnCode':
asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable]
CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
^
asncode.c: At top level:
asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable]
static CharPtr defptr = "ASNCODE_PTRVAL_SLOT";
^
asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable]
static CharPtr defbigint = "ASNCODE_BIGINTVAL_SLOT";
^
asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable]
static CharPtr defreal = "ASNCODE_REALVAL_SLOT";
^
asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable]
static CharPtr defbool = "ASNCODE_BOOLVAL_SLOT";
^
asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable]
static CharPtr defbyte = "ASNCODE_BYTEVAL_SLOT";
^
cp -p asntool ../bin
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall -fPIC" \
LDFLAGS="" \
NETENTREZVERSION="2.02c2ASN1SPEC6" \
BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
ni_service.c: In function 's_GenericGetService':
ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable]
CONNECTOR c;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
netentr.c: In function 's_NetEntTLEvalCount':
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
/*MsgSetReadTimeout(Entrez_ni, 60);*/
^
netentr.c: In function 's_NetDocSumListGet':
netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable]
AsnModulePtr amp;
^
netentr.c: In function 's_NetTermListByTerm':
netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable]
int terms_to_read;
^
netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable]
AsnIoPtr asnout = Entrez_asnout;
^
netentr.c: In function 's_NetTermListByPage':
netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable]
AsnIoPtr asnout = Entrez_asnout;
^
netentr.c: In function 'NetEntTLEval':
netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return lsp;
^
netentr.c: In function 'NetEntTLEvalCount':
netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (atp == ENTREZ_BACK_eval_count)
^
netentr.c:782:16: note: 'atp' was declared here
AsnTypePtr atp;
^
netentr.c: In function 'NetTermListByTerm':
netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wmaybe-uninitialized]
next_page += p->num_pages_read;
^
netentr.c:1210:9: note: 'next_page' was declared here
int next_page;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
netlib.c: In function 'BoolExprAsnWrite':
netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable]
static int n = 0;
^
netlib.c: At top level:
netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable]
static Boolean loaded = FALSE;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
objneten.c: In function 'EntrezNeighborTextAsnRead':
objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'ChildLinkAsnRead':
objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'EntrezHierarchyAsnRead':
objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'EntrezBlastreqAsnRead':
objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'EntrezExtraInfoAsnRead':
objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'ClusterArticlesAsnRead':
objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'ClusterRespAsnRead':
objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'DateConstraintsAsnRead':
objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'DateVectorAsnRead':
objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'GetByFidAsnRead':
objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'GetFeatIdsAsnRead':
objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
8, 6, 3, 3,
^
Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Naccentr.c: In function 'EntrezDocSumListGet':
Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
Int2 actual;
^
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
8, 6, 3, 3,
^
Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Caccentr.c: In function 'EntrezDocSumListGet':
Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
Int2 actual;
^
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
trmlst.c: In function 'FetchFromTermList':
trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable]
Int2 numRead;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
docsum.c: In function 'ImportDocSumForm':
docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable]
SeqEntryPtr sephead = NULL;
^
docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable]
Boolean is_na = TRUE;
^
docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable]
Uint1 choice = 0;
^
docsum.c: In function 'SaveDocsumProject':
docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SummFormPtr sfp;
^
docsum.c: At top level:
docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable]
static Uint1 checkmark [] = {
^
docsum.c: In function 'FetchLocalBioseq':
docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (str == NULL) return failed;
^
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
objmla.c: In function 'MlaRequestFree':
objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla.c: In function 'TitleMsgAsnRead':
objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla.c: In function 'TitleMsgListAsnRead':
objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmla.c: In function 'MlaBackAsnRead':
objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function]
/*FCN*/s_MedArchPubSetEntryGetPmId (
^
medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function]
/*FCN*/s_MedArchPubSetEntryGetUid (
^
medarch.c: In function 'MedArchPubSetCreate':
medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
^
In file included from ../include/ni_types.h:85:0,
from ../include/ncbinet.h:84,
from medarch.c:122:
../include/asn.h:465:41: warning: 'pubSetAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
^
medarch.c:1625:16: note: 'pubSetAtp' was declared here
AsnTypePtr pubSetAtp;
^
medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
AsnWrite (aip, startAtp, NULL);
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
objblst3.c: In function 'BlastSearchAsnRead':
objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastRequestFree':
objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff2_cutoff2Free':
objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'Cutoff2_cutoff2AsnRead':
objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff_cutoffAsnRead':
objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff_cutoffFree':
objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastMatrixAsnRead':
objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastDbinfoAsnRead':
objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastMaskAsnRead':
objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastKABlkAsnRead':
objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastErrorAsnRead':
objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastPhialignAsnRead':
objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastDbinfoGetAsnRead':
objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastSeqIdAsnRead':
objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastSequenceAsnRead':
objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastPartsAsnRead':
objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastQueuedAsnRead':
objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastProgressAsnRead':
objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastDeflineAsnRead':
objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastVersionAsnRead':
objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'MegaBlastHitAsnRead':
objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'MegaBlastResultsAsnRead':
objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c: In function 'BlastResponseAsnRead':
objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c:1421:10: note: 'choice' was declared here
Uint1 choice;
^
objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c:1787:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
netblap3.c: In function 'BlastNetBioseqFetchFunc':
netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omdp;
^
netblap3.c: In function 'MegaBlastSeqLocNetCore':
netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID = 0;
^
In file included from ../include/netblap3.h:134:0,
from netblap3.c:364:
netblap3.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from netblap3.c:364:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function]
BlastSetErrorHook(void)
^
netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function]
BlastSetErrorStatus(Boolean status)
^
netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function]
BlastGetErrorStatus(void)
^
netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function]
BlastResetOldHook(void)
^
netblap3.c: In function 'BlastNetMatrixToBlastMatrix':
netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
^
netblap3.c: In function 'TraditionalBlastReportEngine':
netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
objtax1.c: In function 'Taxon1ReqFree':
objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1InfoAsnRead':
objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1ErrorAsnRead':
objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1NameAsnRead':
objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1DataAsnRead':
objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon2DataAsnRead':
objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax1.c: In function 'Taxon1RespAsnRead':
objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
taxutil.c: In function 'taxname_match':
taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable]
CharPtr taxstr = NULL;
^
taxutil.c: In function 'get_lineage':
taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return Nlm_StringSave(onp->lineage);
^
taxutil.c: In function 'get_gcode':
taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wmaybe-uninitialized]
gclp->genomic = onp->gcode;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function 'getIdByOrgRef':
tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable]
Boolean om_flag= FALSE;
^
tc2proc.c: In function 'bldLineage':
tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable]
Int2 rank= 0;
^
tc2proc.c: In function 'storedTaxId':
tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable]
ObjectIdPtr object_id;
^
tc2proc.c: In function 'tax1e_needUpdate':
tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable]
CharPtr hit_name;
^
tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable]
Boolean need_search_name= TRUE;
^
tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable]
int is_species;
^
tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable]
Taxon1DataPtr res;
^
tc2proc.c: At top level:
tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function]
static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
^
tc2proc.c: In function 'mergeOrgMod':
tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wmaybe-uninitialized]
lst->next= src;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
parttree.c: In function 'tax_ptree_addSubtree':
parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable]
Boolean need_remove= FALSE;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
taxblast.c: In function 'TXBHtmlReportInternal':
taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable]
Int2 numtaxa, numorgs, numhits, linlines, longname;
^
taxblast.c: At top level:
taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function]
static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
^
taxblast.c: In function 'RDTaxLookupReset':
taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
taxblast.c: In function 'TXBGetTargetGi.isra.2':
taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wmaybe-uninitialized]
return gi;
^
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
id1gen.c: In function 'ID1serverRequestFree':
id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1serverMaxcomplexAsnRead':
id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1SeqHistAsnRead':
id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1SeqEntryInfoAsnRead':
id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1blobInfoAsnRead':
id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1serverDebugAsnRead':
id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c: In function 'ID1serverBackAsnRead':
id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
id1arch.c: In function 'ID1ArchSeqEntryGet':
id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
id1arch.c: In function 'ID1ArchGIGet':
id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
id1arch.c: In function 'SeqHistPrintTable':
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
1900+shp->replace_date->data[1]);
^
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat=]
fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
^
gcc -c -g -O2 -Wall -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
accid1.c: In function 's_ID1BioseqFetchFunc':
accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable]
Int2 retcode=0;
^
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
mkdir ../shlib
rm -f ../shlib/*.a
ln ../lib/*.a ../shlib
cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="gcc -o" SH2="-shared *.o"
make[3]: Entering directory `/«PKGBUILDDIR»/shlib'
gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20120620 \
-Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive \
-lm
gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20120620 \
-Wl,--whole-archive libncbi.a -Wl,--no-whole-archive \
-lm
gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20120620 \
-Wl,--whole-archive libblast.a -Wl,--no-whole-archive \
libblastcompadj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libblast.so.6.1.20120620 libblast.so.6
ln -s libblast.so.6.1.20120620 libblast.so
gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20120620 \
-Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive \
libncbi.so.6.1.20120620 -lm
gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20120620 \
-Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive \
libblastcompadj.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20120620 \
-Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive \
libblast.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libblastapi.so.6.1.20120620 libblastapi.so.6
ln -s libblastapi.so.6.1.20120620 libblastapi.so
ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so.6
ln -s libblastcompadj.so.6.1.20120620 libblastcompadj.so
gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20120620 \
-Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive \
libncbi.so.6.1.20120620
gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20120620 \
-Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive \
libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620
gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20120620 \
-Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive \
libncbiid1.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20120620 \
-Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive \
libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lGLU -lGL -lpng -lXm -lXmu -lXt -lX11 -lm
gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20120620 \
-Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive \
libblastapi.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20120620 \
-Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive \
libncbidesk.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620
ln -s libddvlib.so.6.1.20120620 libddvlib.so.6
ln -s libddvlib.so.6.1.20120620 libddvlib.so
ln -s libncbi.so.6.1.20120620 libncbi.so.6
ln -s libncbi.so.6.1.20120620 libncbi.so
ln -s libncbiNacc.so.6.1.20120620 libncbiCacc.so.6.1.20120620
ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so.6
ln -s libncbiCacc.so.6.1.20120620 libncbiCacc.so
gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20120620 \
-Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive \
libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620
gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20120620 \
-Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive \
libncbicdr.so.6.1.20120620 libnetentr.a libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so.6
ln -s libncbiNacc.so.6.1.20120620 libncbiNacc.so
ln -s libncbiNacc.so.6.1.20120620 libncbiacc.so.6.1.20120620
ln -s libncbiacc.so.6.1.20120620 libncbiacc.so.6
ln -s libncbiacc.so.6.1.20120620 libncbiacc.so
ln -s libncbicdr.so.6.1.20120620 libncbicdr.so.6
ln -s libncbicdr.so.6.1.20120620 libncbicdr.so
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3d.so.6.1.20120620
ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so.6
ln -s libncbicn3d.so.6.1.20120620 libncbicn3d.so
gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20120620 \
-Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive \
libncbiNacc.so.6.1.20120620 libddvlib.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 -lm
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so.6
ln -s libncbicn3dOGL.so.6.1.20120620 libncbicn3dOGL.so
ln -s libncbidesk.so.6.1.20120620 libncbidesk.so.6
ln -s libncbidesk.so.6.1.20120620 libncbidesk.so
ln -s libncbiid1.so.6.1.20120620 libncbiid1.so.6
ln -s libncbiid1.so.6.1.20120620 libncbiid1.so
gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20120620 \
-Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive \
libncbiobj.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbi.so.6.1.20120620
ln -s libncbimla.so.6.1.20120620 libncbimla.so.6
ln -s libncbimla.so.6.1.20120620 libncbimla.so
ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so.6
ln -s libncbimmdb.so.6.1.20120620 libncbimmdb.so
ln -s libncbiobj.so.6.1.20120620 libncbiobj.so.6
ln -s libncbiobj.so.6.1.20120620 libncbiobj.so
ln -s libncbitool.so.6.1.20120620 libncbitool.so.6
ln -s libncbitool.so.6.1.20120620 libncbitool.so
gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20120620 \
-Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive \
libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620 -lm
ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so.6
ln -s libncbitxc2.so.6.1.20120620 libncbitxc2.so
gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20120620 \
-Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive \
libncbitool.so.6.1.20120620 libnetcli.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620
ln -s libnetblast.so.6.1.20120620 libnetblast.so.6
ln -s libnetblast.so.6.1.20120620 libnetblast.so
ln -s libnetcli.so.6.1.20120620 libnetcli.so.6
ln -s libnetcli.so.6.1.20120620 libnetcli.so
ln -s libncbiNacc.so.6.1.20120620 libnetentr.so.6.1.20120620
ln -s libnetentr.so.6.1.20120620 libnetentr.so.6
ln -s libnetentr.so.6.1.20120620 libnetentr.so
gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20120620 \
-Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive \
libncbi.so.6.1.20120620 -lm
ln -s libvibgif.so.6.1.20120620 libvibgif.so.6
ln -s libvibgif.so.6.1.20120620 libvibgif.so
gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20120620 \
-Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive \
libncbiNacc.so.6.1.20120620 libncbidesk.so.6.1.20120620 libncbimmdb.so.6.1.20120620 libvibrantOGL.so.6.1.20120620 libncbitool.so.6.1.20120620 libncbicdr.so.6.1.20120620 libncbiobj.so.6.1.20120620 libncbi.so.6.1.20120620
ln -s libvibnet.so.6.1.20120620 libvibnet.so.6
ln -s libvibnet.so.6.1.20120620 libvibnet.so
ln -s libvibrantOGL.so.6.1.20120620 libvibrant.so.6.1.20120620
ln -s libvibrant.so.6.1.20120620 libvibrant.so.6
ln -s libvibrant.so.6.1.20120620 libvibrant.so
ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so.6
ln -s libvibrantOGL.so.6.1.20120620 libvibrantOGL.so
make[3]: Leaving directory `/«PKGBUILDDIR»/shlib'
rm -f ../shlib/*.a
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build clean
make[2]: Entering directory `/«PKGBUILDDIR»/build'
rm -f *.[acho] *.glo
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build all LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall -D_PNG" \
LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory `/«PKGBUILDDIR»/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
mkdir: cannot create directory '../include/connect': File exists
make[2]: [copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
mkdir: cannot create directory '../include/ctools': File exists
make[2]: [copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbithr.c
ncbithr.c: In function 's_TlsDestroyAll':
ncbithr.c:2529:11: warning: variable 'err_code' set but not used [-Wunused-but-set-variable]
int err_code = 0;
^
cp -p ncbithr.o ../lib
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbimain.c
ncbimain.c:82:1: warning: return type defaults to 'int' [-Wreturn-type]
main(int argc, char *argv[])
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbibs.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF wwwutils.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbierr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbienv.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbifile.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbimath.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbimem.c
ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default]
# define __USE_BSD
^
In file included from /usr/include/arm-linux-gnueabihf/sys/types.h:25:0,
from ../include/ncbilcl.h:150,
from ../include/ncbi.h:57,
from ncbimem.c:163:
/usr/include/features.h:309:0: note: this is the location of the previous definition
# define __USE_BSD 1
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
ncbimisc.c: In function 'MergeStringArray':
ncbimisc.c:1269:22: warning: 'return' with no value, in function returning non-void [-Wreturn-type]
if (rsult == NULL) return;
^
ncbimisc.c: In function 'Nlm_MD5Final':
ncbimisc.c:2242:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((Nlm_Uint4Ptr) ctx->in)[14] = ctx->bits[0];
^
ncbimisc.c:2243:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
((Nlm_Uint4Ptr) ctx->in)[15] = ctx->bits[1];
^
ncbimisc.c:2250:26: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
^
ncbimisc.c: In function 'XmlPathSuffixIs':
ncbimisc.c:2947:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbistr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbitime.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbilang.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnbufo.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asndebin.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnenbin.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asngen.c
asngen.c: In function 'AsnFindNthPieceOfObject':
asngen.c:540:16: warning: variable 'aeop' set but not used [-Wunused-but-set-variable]
AsnExpOptPtr aeop;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnio.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnlex.c
asnlex.c:1322:13: warning: 'AsnLexWordUTF8' defined but not used [-Wunused-function]
static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnlext.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnout.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asnprint.c
asnprint.c: In function 'GetXMLModuleName':
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
for (currmod; currmod != NULL; currmod = currmod->next)
^
asnprint.c: In function 'AsnPrintCloseStruct':
asnprint.c:1771:7: warning: variable 'isa' set but not used [-Wunused-but-set-variable]
Int2 isa;
^
asnprint.c: In function 'AsnPrintModuleXMLInc':
asnprint.c:2092:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
CharPtr ptr;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asntypes.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asngenob.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gifgen.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF togif.c
togif.c: In function 'gdImageCreateFromGif':
togif.c:961:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable]
int AspectRatio;
^
togif.c:960:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable]
int Background;
^
togif.c:959:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable]
int ColorResolution;
^
gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
ncbithrs.c: In function 's_TlsDestroyAll':
ncbithrs.c:2529:11: warning: unused variable 'err_code' [-Wunused-variable]
int err_code = 0;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function 're_match_2':
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3768:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3915:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:3968:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (p + mcnt, d, -2);
^
regex.c:4071:25: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable]
const char *sdummy;
^
regex.c:4070:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable]
unsigned char *pdummy;
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:4107:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (0, 0, -2);
^
regex.c:2368:11: warning: unused variable 'destination' [-Wunused-variable]
char *destination; \
^
regex.c:4120:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
PUSH_FAILURE_POINT (0, 0, -2);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tsprintf.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tree.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF matrix.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
ncbi_socket.c: In function 's_GetLocalPort':
ncbi_socket.c:386:33: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_IsConnected':
ncbi_socket.c:2435:9: warning: pointer targets in passing argument 5 of 'getsockopt' differ in signedness [-Wpointer-sign]
if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:220:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockopt (int __fd, int __level, int __optname,
^
ncbi_socket.c: In function 'TRIGGER_Create':
ncbi_socket.c:4002:18: warning: unused variable 'x_id' [-Wunused-variable]
unsigned int x_id = ++s_ID_Counter;
^
ncbi_socket.c: In function 's_CreateListening':
ncbi_socket.c:4454:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
x_error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_Accept':
ncbi_socket.c:4722:5: warning: pointer targets in passing argument 3 of 'accept' differ in signedness [-Wpointer-sign]
if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:244:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int accept (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 's_CreateOnTop':
ncbi_socket.c:5174:5: warning: pointer targets in passing argument 3 of 'getpeername' differ in signedness [-Wpointer-sign]
if (getpeername(fd, &peer.sa, &peerlen) != 0) {
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:142:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getpeername (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c:5210:13: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
if (getsockname(fd, &peer.sa, &peerlen) != 0)
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 'DSOCK_Bind':
ncbi_socket.c:6609:9: warning: pointer targets in passing argument 3 of 'getsockname' differ in signedness [-Wpointer-sign]
x_error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:128:12: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern int getsockname (int __fd, __SOCKADDR_ARG __addr,
^
ncbi_socket.c: In function 'DSOCK_RecvMsg':
ncbi_socket.c:7002:35: warning: pointer targets in passing argument 6 of 'recvfrom' differ in signedness [-Wpointer-sign]
(struct sockaddr*) &sin, &sinlen);
^
In file included from ncbi_socketp.h:53:0,
from ncbi_connssl.h:37,
from ncbi_socket.c:38:
/usr/include/arm-linux-gnueabihf/sys/socket.h:175:16: note: expected 'socklen_t * __restrict__' but argument is of type 'TSOCK_socklen_t *'
extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n,
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urlquery.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF binary.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn_connection.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objacces.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objalign.c
objalign.c: In function 'CommonSeqAlignLabelFunc':
objalign.c:135:27: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
CharPtr curr, typelabel, tmp;
^
objalign.c: In function 'SplicedSegAsnRead':
objalign.c:2169:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseSegAsnRead':
objalign.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedExonAsnRead':
objalign.c:2600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedSegModifierFree':
objalign.c:2858:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'ProductPosFree':
objalign.c:3031:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'SplicedExonChunkFree':
objalign.c:3204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalign.c: In function 'SpliceSiteAsnRead':
objalign.c:3446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'ProtPosAsnRead':
objalign.c:3600:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseAlignAsnRead':
objalign.c:3769:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SparseSegExtAsnRead':
objalign.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalign.c: In function 'SplicedSegModifierAsnRead':
objalign.c:2938:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objalign.c: In function 'SplicedExonChunkAsnRead':
objalign.c:3305:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objall.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objbibli.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objfeat.c
objfeat.c: In function 'ModelEvidenceSupportAsnRead':
objfeat.c:1494:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ExperimentSupportAsnRead':
objfeat.c:1739:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ProgramIdAsnRead':
objfeat.c:1921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'EvidenceBasisAsnRead':
objfeat.c:2088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'InferenceSupportAsnRead':
objfeat.c:2252:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ModelEvidenceItemAsnRead':
objfeat.c:2465:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SeqFeatSupportAsnRead':
objfeat.c:2667:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAQualAsnRead':
objfeat.c:4192:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAQualSetAsnRead':
objfeat.c:4341:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'RNAGenAsnRead':
objfeat.c:4469:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'GeneNomenclatureAsnRead':
objfeat.c:4649:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRPrimerAsnRead':
objfeat.c:8191:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRPrimerSetAsnRead':
objfeat.c:8333:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRReactionAsnRead':
objfeat.c:8454:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PCRReactionSetAsnRead':
objfeat.c:8597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneRefAsnRead':
objfeat.c:8724:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneSeqSetAsnRead':
objfeat.c:8914:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'CloneSeqAsnRead':
objfeat.c:9044:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SomaticOriginAsnRead':
objfeat.c:9393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'SomaticOriginConditionAsnRead':
objfeat.c:9472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'VariationRefAsnRead':
objfeat.c:9551:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ConsequenceAsnWrite':
objfeat.c:10112:12: warning: variable 'av' set but not used [-Wunused-but-set-variable]
DataVal av;
^
objfeat.c: In function 'Consequence_loss_of_heterozygosityAsnRead':
objfeat.c:10572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_frameshiftAsnRead':
objfeat.c:10650:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'VarRefDataFree':
objfeat.c:10750:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'VarRefDataSetAsnRead':
objfeat.c:10803:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_elementFree':
objfeat.c:10997:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'VariationInstAsnRead':
objfeat.c:11126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: At top level:
objfeat.c:11275:1: warning: "/*" within comment [-Wcomment]
/**************************************************
^
objfeat.c: In function 'VariantPropertiesAsnRead':
objfeat.c:11304:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PhenotypeAsnRead':
objfeat.c:11625:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'PopulationDataAsnRead':
objfeat.c:11821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'ExtLocAsnRead':
objfeat.c:12034:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Seq_seqFree':
objfeat.c:12199:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objfeat.c: In function 'DeltaItemAsnRead':
objfeat.c:12232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objfeat.c: In function 'Consequence_elementAsnRead':
objfeat.c:10539:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objfeat.c: In function 'CodeBreakAsnWrite':
objfeat.c:3647:19: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (! AsnWrite(aip, tmp, &av)) goto erret;
^
objfeat.c: In function 'VarRefDataAsnRead':
objfeat.c:10965:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objgen.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objloc.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmedli.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objpub.c
objpub.c: In function 'PubLabelUnique':
objpub.c:1353:17: warning: unused variable 'pmid' [-Wunused-variable]
Int4 muid = 0, pmid = 0;
^
objpub.c:1353:7: warning: unused variable 'muid' [-Wunused-variable]
Int4 muid = 0, pmid = 0;
^
objpub.c: In function 'PubSetAsnRead':
objpub.c:869:13: warning: 'func' may be used uninitialized in this function [-Wmaybe-uninitialized]
pnt = (* func)(aip, atp);
^
objpub.c:880:25: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
cit->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objres.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objscoremat.c
objscoremat.c: In function 'PssmAsnRead':
objscoremat.c:93:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmIntermediateDataAsnRead':
objscoremat.c:336:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmFinalDataAsnRead':
objscoremat.c:544:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmParametersAsnRead':
objscoremat.c:759:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'PssmWithParametersAsnRead':
objscoremat.c:936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'BlockPropertyAsnRead':
objscoremat.c:1102:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'CoreBlockAsnRead':
objscoremat.c:1275:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'LoopConstraintAsnRead':
objscoremat.c:1463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'CoreDefAsnRead':
objscoremat.c:1626:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objscoremat.c: In function 'FormatRpsDbParametersAsnRead':
objscoremat.c:1794:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objseq.c
objseq.c: In function 'LinkageEvidenceAsnRead':
objseq.c:1603:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objseq.c: In function 'SeqGapAsnRead':
objseq.c:1755:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objseq.c: In function 'SeqDescrAsnWriteExtra':
objseq.c:2023:48: warning: variable 'had_anp' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
^
objseq.c: In function 'SeqDescAsnRead':
objseq.c:2446:28: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->data.ptrvalue = (Pointer)tmp;
^
objseq.c: In function 'BioseqAsnRead':
objseq.c:976:27: warning: 'osp' may be used uninitialized in this function [-Wmaybe-uninitialized]
osp->found_it = TRUE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objblock.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:45:51: warning: "/*" within comment [-Wcomment]
* environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objsset.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objsub.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objprt.c
objprt.c: In function 'PrintFormBooleanAsnRead':
objprt.c:877:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormBooleanFree(ptr);
^
objprt.c: In function 'PrintFormEnumAsnRead':
objprt.c:992:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormEnumFree(ptr);
^
objprt.c: In function 'PrintFormTextAsnRead':
objprt.c:1100:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormTextFree(ptr);
^
objprt.c: In function 'PrintFormAsnRead':
objprt.c:591:6: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp = PrintFormFree(vnp);
^
objprt.c: In function 'PrintFormatAsnRead':
objprt.c:429:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormatFree(ptr);
^
objprt.c: In function 'PrintTemplateAsnRead':
objprt.c:247:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintTemplateFree(ptr);
^
objprt.c: In function 'PrintFormBlockAsnRead':
objprt.c:755:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=PrintFormBlockFree(ptr);
^
objprt.c: In function 'UserFormatAsnRead':
objprt.c:1209:5: warning: 'ptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
ptr=UserFormatFree(ptr);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objfdef.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objalignloc.c
objalignloc.c: In function 'AlignLocSetAsnRead':
objalignloc.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c: In function 'Loc_locFree':
objalignloc.c:196:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalignloc.c: In function 'AlignLocAsnRead':
objalignloc.c:233:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:232:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'Loc_locAsnRead':
objalignloc.c:313:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignIdFree':
objalignloc.c:525:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:557:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignBoxAsnRead':
objalignloc.c:746:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:745:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignRowsAsnRead':
objalignloc.c:925:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:924:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignColumnsAsnRead':
objalignloc.c:1086:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objalignloc.c:1085:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objalignloc.c: In function 'AlignIdAsnRead':
objalignloc.c:613:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objtable.c
objtable.c: In function 'SeqTableColumnInfoAsnRead':
objtable.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableColumnAsnRead':
objtable.c:268:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c:267:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableColumnAsnWrite':
objtable.c:364:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'SeqTableAsnRead':
objtable.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonStringTableAsnRead':
objtable.c:654:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonStringTableAsnWrite':
objtable.c:729:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'CommonBytesTableAsnRead':
objtable.c:815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtable.c: In function 'CommonBytesTableAsnWrite':
objtable.c:890:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objtable.c: In function 'SeqTableSingleDataFree':
objtable.c:1220:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1264:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtable.c: In function 'SeqTableMultiDataAsnRead':
objtable.c:1106:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtable.c: In function 'SeqTableSingleDataAsnRead':
objtable.c:1349:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtable.c: In function 'SeqTableSparseIndexAsnRead':
objtable.c:1554:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objpubme.c
objpubme.c: In function 'PubmedEntryAsnRead':
objpubme.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objpubme.c: In function 'PubmedUrlAsnRead':
objpubme.c:285:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objpubme.c:284:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmdrs.c
objmdrs.c: In function 'MedlarsEntryAsnRead':
objmdrs.c:85:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmdrs.c: In function 'MedlarsRecordAsnRead':
objmdrs.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmdrs.c:255:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objproj.c
objproj.c: In function 'ProjectAsnRead':
objproj.c:116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objproj.c:115:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objproj.c: In function 'ProjectDescrAsnRead':
objproj.c:718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objproj.c: In function 'ProjdescFree':
objproj.c:852:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objproj.c: In function 'ProjdescAsnRead':
objproj.c:893:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/mmdbapi.h:92,
from ../include/mapproj.h:45,
from objproj.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objproj.c: In function 'ProjdescAsnRead':
objproj.c:953:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objgbseq.c
objgbseq.c: In function 'GBSetAsnRead':
objgbseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBSeqAsnRead':
objgbseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBReferenceAsnRead':
objgbseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentAsnRead':
objgbseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBStrucCommentAsnRead':
objgbseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBFeatureAsnRead':
objgbseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBFeatureSetAsnRead':
objgbseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBAltSeqDataAsnRead':
objgbseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBXrefAsnRead':
objgbseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentParagraphAsnRead':
objgbseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBCommentItemAsnRead':
objgbseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBStrucCommentItemAsnRead':
objgbseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBIntervalAsnRead':
objgbseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBQualifierAsnRead':
objgbseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objgbseq.c: In function 'GBAltSeqItemAsnRead':
objgbseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objtseq.c
objtseq.c: In function 'TSeqAsnRead':
objtseq.c:89:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtseq.c: In function 'TSeqSetAsnRead':
objtseq.c:322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtseq.c: In function 'BioseqToTSeq':
objtseq.c:448:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
Uint1 seqcode;
^
objtseq.c: In function 'BioseqToMiniTSeq':
objtseq.c:560:8: warning: variable 'seqcode' set but not used [-Wunused-but-set-variable]
Uint1 seqcode;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
objinsdseq.c: In function 'INSDSetAsnRead':
objinsdseq.c:68:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDSeqAsnRead':
objinsdseq.c:229:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDReferenceAsnRead':
objinsdseq.c:725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentAsnRead':
objinsdseq.c:963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDStrucCommentAsnRead':
objinsdseq.c:1127:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDFeatureAsnRead':
objinsdseq.c:1295:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDFeatureSetAsnRead':
objinsdseq.c:1519:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDAltSeqDataAsnRead':
objinsdseq.c:1683:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDXrefAsnRead':
objinsdseq.c:1846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentParagraphAsnRead':
objinsdseq.c:2012:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDCommentItemAsnRead':
objinsdseq.c:2163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDStrucCommentItemAsnRead':
objinsdseq.c:2330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDIntervalAsnRead':
objinsdseq.c:2506:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDQualifierAsnRead':
objinsdseq.c:2716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objinsdseq.c: In function 'INSDAltSeqItemAsnRead':
objinsdseq.c:2887:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmacro.c
objmacro.c: In function 'AECRActionAsnRead':
objmacro.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseActionAsnRead':
objmacro.c:269:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:268:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MacroActionListAsnRead':
objmacro.c:472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:469:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MacroActionListAsnWrite':
objmacro.c:525:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SuspectRuleSetAsnRead':
objmacro.c:586:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:583:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SuspectRuleSetAsnWrite':
objmacro.c:639:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'WordSubstitutionAsnRead':
objmacro.c:719:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c: In function 'WordSubstitutionSetAsnRead':
objmacro.c:884:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:881:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'WordSubstitutionSetAsnWrite':
objmacro.c:937:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'StringConstraintAsnRead':
objmacro.c:1025:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1024:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StringConstraintSetAsnRead':
objmacro.c:1266:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1263:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'StringConstraintSetAsnWrite':
objmacro.c:1319:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'LocationPosConstraintFree':
objmacro.c:1359:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1388:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationConstraintAsnRead':
objmacro.c:1587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1586:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalValAsnRead':
objmacro.c:1800:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:1799:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalValChoiceFree':
objmacro.c:1927:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FeatQualLegalValChoiceAsnRead':
objmacro.c:1959:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatQualLegalSetAsnRead':
objmacro.c:2111:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2108:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FeatQualLegalSetAsnWrite':
objmacro.c:2164:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FeatQualChoiceFree':
objmacro.c:2204:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FeatQualChoiceAsnRead':
objmacro.c:2236:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldAsnRead':
objmacro.c:2415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2414:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldLegalAsnRead':
objmacro.c:2579:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2578:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FeatureFieldPairAsnRead':
objmacro.c:2742:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:2741:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaFeatTypeFree':
objmacro.c:2882:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:2914:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaQualAsnRead':
objmacro.c:3162:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3161:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RnaQualPairAsnRead':
objmacro.c:3327:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3326:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualPairAsnRead':
objmacro.c:3500:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3499:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualChoiceFree':
objmacro.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3654:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualTextValAsnRead':
objmacro.c:3869:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:3868:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualValChoiceFree':
objmacro.c:3996:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4028:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualValSetAsnRead':
objmacro.c:4224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4221:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SourceQualValSetAsnWrite':
objmacro.c:4277:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'CDSGeneProtFieldPairAsnRead':
objmacro.c:4353:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4352:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldFree':
objmacro.c:4478:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4507:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoMoleculePairAsnRead':
objmacro.c:4732:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4731:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoTechniquePairAsnRead':
objmacro.c:4893:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:4892:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoCompletednessPairAsnRead':
objmacro.c:5054:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5053:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoMolClassPairAsnRead':
objmacro.c:5215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoTopologyPairAsnRead':
objmacro.c:5376:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5375:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoStrandPairAsnRead':
objmacro.c:5537:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5536:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldPairFree':
objmacro.c:5662:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5709:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoFieldListAsnRead':
objmacro.c:5901:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:5898:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MolinfoFieldListAsnWrite':
objmacro.c:5954:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MolinfoFieldConstraintAsnRead':
objmacro.c:6032:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6031:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldFree':
objmacro.c:6160:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6192:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldPairAsnRead':
objmacro.c:6386:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6385:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'StructuredCommentFieldPairAsnWrite':
objmacro.c:6461:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'DBLinkFieldPairAsnRead':
objmacro.c:6553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6552:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldConstraintAsnRead':
objmacro.c:6715:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:6714:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeFree':
objmacro.c:6843:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6872:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PubFieldSpecialConstraintAsnRead':
objmacro.c:7087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7086:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PublicationConstraintAsnRead':
objmacro.c:7253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7252:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceConstraintAsnRead':
objmacro.c:7432:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7431:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtPseudoConstraintAsnRead':
objmacro.c:7621:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7620:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtConstraintFieldFree':
objmacro.c:7746:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'CDSGeneProtConstraintFieldAsnRead':
objmacro.c:7775:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtQualConstraintAsnRead':
objmacro.c:7948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:7947:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CDSGeneProtQualConstraintAsnWrite':
objmacro.c:8030:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FieldConstraintAsnRead':
objmacro.c:8129:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:8128:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldConstraintAsnWrite':
objmacro.c:8204:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'FieldTypeFree':
objmacro.c:8260:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8304:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintFree':
objmacro.c:8511:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8540:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'QuantityConstraintFree':
objmacro.c:8718:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8747:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceConstraintAsnRead':
objmacro.c:8945:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:8944:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TranslationConstraintAsnRead':
objmacro.c:9170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9169:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConstraintChoiceFree':
objmacro.c:9322:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9384:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConstraintChoiceSetAsnRead':
objmacro.c:9616:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9613:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'ConstraintChoiceSetAsnWrite':
objmacro.c:9669:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextMarkerFree':
objmacro.c:9709:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9741:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TextPortionAsnRead':
objmacro.c:9937:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:9936:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldEditAsnRead':
objmacro.c:10153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FieldPairTypeFree':
objmacro.c:10300:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10350:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyActionAsnRead':
objmacro.c:10567:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10566:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditActionAsnRead':
objmacro.c:10744:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:10743:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditActionAsnWrite':
objmacro.c:10819:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextTransformFree':
objmacro.c:10875:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TextTransformAsnRead':
objmacro.c:10910:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TextTransformSetAsnRead':
objmacro.c:11081:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11078:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'TextTransformSetAsnWrite':
objmacro.c:11134:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'ConvertActionAsnRead':
objmacro.c:11214:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11213:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CopyActionAsnRead':
objmacro.c:11406:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11405:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SwapActionAsnRead':
objmacro.c:11572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SwapActionAsnWrite':
objmacro.c:11647:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'AECRParseActionAsnRead':
objmacro.c:11745:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11744:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveActionAsnRead':
objmacro.c:11961:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:11960:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveActionAsnWrite':
objmacro.c:12029:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveOutsideActionAsnRead':
objmacro.c:12119:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:12118:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ActionChoiceFree':
objmacro.c:12259:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12312:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcOrgChoiceFree':
objmacro.c:12499:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12528:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcOrgAsnRead':
objmacro.c:12711:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:12710:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcGeneralIdFree':
objmacro.c:12839:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12871:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseSrcFree':
objmacro.c:13027:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13065:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseDstOrgAsnRead':
objmacro.c:13319:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:13318:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ParseDestFree':
objmacro.c:13447:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13485:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationIntervalAsnRead':
objmacro.c:13693:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:13692:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationChoiceFree':
objmacro.c:13818:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13850:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SequenceListAsnRead':
objmacro.c:14024:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14021:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SequenceListAsnWrite':
objmacro.c:14077:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'SequenceListChoiceFree':
objmacro.c:14117:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SequenceListChoiceAsnRead':
objmacro.c:14149:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyFeatureActionAsnRead':
objmacro.c:14338:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14337:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveFeatureActionAsnRead':
objmacro.c:14602:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14601:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFromCDSOptionsAsnRead':
objmacro.c:14766:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:14765:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureSrcOptionsFree':
objmacro.c:14900:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConvertFeatureSrcOptionsAsnRead':
objmacro.c:14932:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RegionTypeAsnRead':
objmacro.c:15099:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15098:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureDstOptionsFree':
objmacro.c:15215:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15250:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ConvertFeatureActionAsnRead':
objmacro.c:15464:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15463:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditLocationStrandAsnRead':
objmacro.c:15670:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15669:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'Partial5SetActionAsnRead':
objmacro.c:15831:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15830:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'Partial3SetActionAsnRead':
objmacro.c:15992:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:15991:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'PartialBothSetActionAsnRead':
objmacro.c:16153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ExtendToFeatureAsnRead':
objmacro.c:16315:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16314:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'LocationEditTypeFree':
objmacro.c:16452:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16499:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'EditFeatureLocationActionAsnRead':
objmacro.c:16774:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16773:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoBlockAsnRead':
objmacro.c:16971:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:16970:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'MolinfoBlockAsnWrite':
objmacro.c:17053:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveDescriptorActionAsnRead':
objmacro.c:17151:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17150:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AutodefActionAsnRead':
objmacro.c:17317:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c: In function 'FixPubCapsActionAsnRead':
objmacro.c:17488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17487:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SortFieldsActionAsnRead':
objmacro.c:17690:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17689:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixAuthorCapsAsnRead':
objmacro.c:17866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:17865:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixCapsActionFree':
objmacro.c:17982:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18017:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixFormatActionFree':
objmacro.c:18189:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18218:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveDuplicateFeatureActionAsnRead':
objmacro.c:18422:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18421:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'GeneXrefTypeAsnRead':
objmacro.c:18613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18612:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'XrefTypeFree':
objmacro.c:18747:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'XrefTypeAsnRead':
objmacro.c:18779:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveXrefsActionAsnRead':
objmacro.c:18948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:18947:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveXrefsActionAsnWrite':
objmacro.c:19023:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MakeGeneXrefActionAsnRead':
objmacro.c:19116:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19115:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AuthorFixActionAsnRead':
objmacro.c:19281:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19280:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'UpdateSequencesActionAsnRead':
objmacro.c:19447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CreateTSAIdsSrcFree':
objmacro.c:19574:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'CreateTSAIdsSrcAsnRead':
objmacro.c:19606:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'CreateTSAIdsActionAsnRead':
objmacro.c:19787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19786:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AutofixActionAsnRead':
objmacro.c:19966:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:19965:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'FixSetsActionFree':
objmacro.c:20084:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20113:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TableMatchTypeFree':
objmacro.c:20269:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20301:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'TableMatchAsnRead':
objmacro.c:20547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:20546:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyTableExtraDataFree':
objmacro.c:20675:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ApplyTableExtraDataAsnRead':
objmacro.c:20704:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ApplyTableActionAsnRead':
objmacro.c:20877:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:20876:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddFileActionAsnRead':
objmacro.c:21057:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21056:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddDescriptorListActionAsnRead':
objmacro.c:21225:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21224:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'AddDescriptorListActionAsnWrite':
objmacro.c:21300:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'RemoveSequencesActionAsnRead':
objmacro.c:21393:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:21392:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'RemoveSequencesActionAsnWrite':
objmacro.c:21461:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objmacro.c: In function 'MacroActionChoiceFree':
objmacro.c:21512:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21613:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SearchFuncFree':
objmacro.c:22093:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22131:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SimpleReplaceAsnRead':
objmacro.c:22400:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22399:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ReplaceFuncFree':
objmacro.c:22536:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmacro.c: In function 'ReplaceFuncAsnRead':
objmacro.c:22571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'ReplaceRuleAsnRead':
objmacro.c:22751:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22750:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SuspectRuleAsnRead':
objmacro.c:22921:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmacro.c:22920:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmacro.c: In function 'SourceQualChoiceAsnRead':
objmacro.c:3727:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SourceQualValChoiceAsnRead':
objmacro.c:4098:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MolinfoFieldAsnRead':
objmacro.c:4587:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MolinfoFieldPairAsnRead':
objmacro.c:5771:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'StructuredCommentFieldAsnRead':
objmacro.c:6251:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FieldTypeAsnRead':
objmacro.c:8390:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ConstraintChoiceAsnRead':
objmacro.c:9466:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcGeneralIdAsnRead':
objmacro.c:12930:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixCapsActionAsnRead':
objmacro.c:18084:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixFormatActionAsnRead':
objmacro.c:18284:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FixSetsActionAsnRead':
objmacro.c:20172:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'MacroActionChoiceAsnRead':
objmacro.c:21852:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationPosConstraintAsnRead':
objmacro.c:1447:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'RnaFeatTypeAsnRead':
objmacro.c:3008:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'PubFieldSpecialConstraintTypeAsnRead':
objmacro.c:6945:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SequenceConstraintMolTypeConstraintAsnRead':
objmacro.c:8613:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'QuantityConstraintAsnRead':
objmacro.c:8806:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'TextMarkerAsnRead':
objmacro.c:9800:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'FieldPairTypeAsnRead':
objmacro.c:10416:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ActionChoiceAsnRead':
objmacro.c:12382:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcOrgChoiceAsnRead':
objmacro.c:12580:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseSrcAsnRead':
objmacro.c:13160:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ParseDestAsnRead':
objmacro.c:13552:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationChoiceAsnRead':
objmacro.c:13906:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'ConvertFeatureDstOptionsAsnRead':
objmacro.c:15320:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'LocationEditTypeAsnRead':
objmacro.c:16603:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'TableMatchTypeAsnRead':
objmacro.c:20392:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmacro.c: In function 'SearchFuncAsnRead':
objmacro.c:22236:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objent2.c
objent2.c: In function 'Entrez2IdListAsnRead':
objent2.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:86:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanExpAsnRead':
objent2.c:276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2BooleanElementFree':
objent2.c:414:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:455:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LimitsAsnRead':
objent2.c:664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:663:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanTermAsnRead':
objent2.c:841:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:840:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2RequestAsnRead':
objent2.c:1037:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1036:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'E2RequestFree':
objent2.c:1198:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'E2RequestAsnRead':
objent2.c:1251:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2EvalBooleanAsnRead':
objent2.c:1488:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1487:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermQueryAsnRead':
objent2.c:1664:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1663:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermPosAsnRead':
objent2.c:1842:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:1841:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2HierQueryAsnRead':
objent2.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2027:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2GetLinksAsnRead':
objent2.c:2215:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2IdAsnRead':
objent2.c:2409:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2408:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DtFilterAsnRead':
objent2.c:2573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2572:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2ReplyAsnRead':
objent2.c:2750:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:2749:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'E2ReplyFree':
objent2.c:2922:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:2978:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2InfoAsnRead':
objent2.c:3224:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2BooleanReplyAsnRead':
objent2.c:3395:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:3394:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumListAsnRead':
objent2.c:3572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2TermListAsnRead':
objent2.c:3733:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2HierNodeAsnRead':
objent2.c:3905:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2LinkSetAsnRead':
objent2.c:4104:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4103:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkCountListAsnRead':
objent2.c:4280:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2DbInfoAsnRead':
objent2.c:4446:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2FieldInfoAsnRead':
objent2.c:4685:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4684:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkInfoAsnRead':
objent2.c:4928:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:4927:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumFieldInfoAsnRead':
objent2.c:5126:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5125:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2DocsumAsnRead':
objent2.c:5301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c: In function 'Entrez2DocsumDataAsnRead':
objent2.c:5463:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5462:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2TermAsnRead':
objent2.c:5629:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5628:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2LinkCountAsnRead':
objent2.c:5811:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objent2.c:5810:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objent2.c: In function 'Entrez2BooleanElementAsnRead':
objent2.c:522:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objent2.c: In function 'E2ReplyAsnRead':
objent2.c:3062:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ent2api.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pmfapi.c
pmfapi.c: In function 'PubMedSynchronousQuery':
pmfapi.c:1224:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQueryEx':
pmfapi.c:1458:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQueryTI':
pmfapi.c:1636:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'PubSeqSynchronousQuerySRA':
pmfapi.c:1717:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiRevHistSynchronousQuery':
pmfapi.c:1790:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiAccVerSynchronousQuery':
pmfapi.c:1842:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'AccnRevHistSynchronousQuery':
pmfapi.c:1893:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'GiSeqIdSetSynchronousQuery':
pmfapi.c:1944:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
^
pmfapi.c: In function 'AccnListSynchronousQuery':
pmfapi.c:1994:12: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objtax3.c
objtax3.c: In function 'Taxon3RequestAsnRead':
objtax3.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3RequestFree':
objtax3.c:200:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'SequenceOfIntAsnRead':
objtax3.c:418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'Taxon3ReplyAsnRead':
objtax3.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3ReplyFree':
objtax3.c:661:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'T3ErrorAsnRead':
objtax3.c:872:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3DataAsnRead':
objtax3.c:1071:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'Value_valueFree':
objtax3.c:1252:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1282:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax3.c: In function 'T3RefreshFlagsAsnRead':
objtax3.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objtax3.c: In function 'T3RequestAsnRead':
objtax3.c:297:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c: In function 'T3ReplyAsnRead':
objtax3.c:741:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c: In function 'T3StatusFlagsAsnRead':
objtax3.c:1420:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax3.c:1361:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tax3api.c
tax3api.c: In function 'Tax3SynchronousQuery':
tax3api.c:188:27: warning: variable 't3' set but not used [-Wunused-but-set-variable]
time_t t1, t2, t3;
^
tax3api.c: In function 'CheckSuggestedFixes':
tax3api.c:753:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'TryNewSuggestedFixes':
tax3api.c:865:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'GetSuggestedNamesFromRank':
tax3api.c:1114:20: warning: variable 'tep' set but not used [-Wunused-but-set-variable]
T3ErrorPtr tep;
^
tax3api.c: In function 'BioSourceFromBioSample':
tax3api.c:3220:16: warning: unused variable 'max' [-Wunused-variable]
time_t max = 0;
^
tax3api.c: At top level:
tax3api.c:297:13: warning: 'SaveTaxon3Request' defined but not used [-Wunused-function]
static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
^
tax3api.c:361:16: warning: 'HasMisspellingFlag' defined but not used [-Wunused-function]
static Boolean HasMisspellingFlag (T3DataPtr t)
^
tax3api.c:616:28: warning: 'TaxFixItemOrigIsOk' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK TaxFixItemOrigIsOk (ValNodePtr vnp)
^
tax3api.c:1886:16: warning: 'EndsWithSp' defined but not used [-Wunused-function]
static Boolean EndsWithSp (CharPtr str)
^
tax3api.c:2345:16: warning: 'StringIsExactMatchForOrgRef' defined but not used [-Wunused-function]
static Boolean StringIsExactMatchForOrgRef (CharPtr str, OrgRefPtr org)
^
tax3api.c:3003:13: warning: 'AddBioSourcesToChecklist' defined but not used [-Wunused-function]
static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objegkludge.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objentgene.c
objentgene.c: In function 'EntrezgeneAsnRead':
objentgene.c:103:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'EntrezgeneSetAsnRead':
objentgene.c:411:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:408:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objentgene.c: In function 'EntrezgeneSetAsnWrite':
objentgene.c:464:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objentgene.c: In function 'GeneTrackAsnRead':
objentgene.c:545:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'GeneCommentaryAsnRead':
objentgene.c:764:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c: In function 'Method_methodFree':
objentgene.c:1056:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1087:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1086:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'Method_methodAsnRead':
objentgene.c:1167:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'GeneSourceAsnRead':
objentgene.c:1408:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1407:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'XtraTermsAsnRead':
objentgene.c:1622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1621:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'OtherSourceAsnRead':
objentgene.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentgene.c:1791:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentgene.c: In function 'MapsAsnRead':
objentgene.c:1219:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objentgene.c:1166:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmla2.c
objmla2.c: In function 'Mla2RequestFree':
objmla2.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla2.c: In function 'TitleMsg2AsnRead':
objmla2.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla2.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla2.c: In function 'TitleMsgList2AsnRead':
objmla2.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla2.c: In function 'Mla22RequestAsnRead':
objmla2.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmla2.c: In function 'Mla2BackAsnRead':
objmla2.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mla2api.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF qblastapi.c
qblastapi.c: In function 'SecondQBlastCallback':
qblastapi.c:259:15: warning: variable 'waiting' set but not used [-Wunused-but-set-variable]
Boolean waiting = FALSE;
^
qblastapi.c: In function 'BLASTGetSeqAnnotByRIDEx':
qblastapi.c:823:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
EIO_Status status;
^
qblastapi.c: In function 'BLASTGetQueryBioseqByRIDEx':
qblastapi.c:868:18: warning: variable 'status' set but not used [-Wunused-but-set-variable]
EIO_Status status;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmim.c
objmim.c: In function 'MimSetAsnRead':
objmim.c:86:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimDateAsnRead':
objmim.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:247:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimEntryAsnRead':
objmim.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimCitAsnRead':
objmim.c:907:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:906:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimTextAsnRead':
objmim.c:1093:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:1092:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimEditItemAsnRead':
objmim.c:1272:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:1271:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimAllelicVariantAsnRead':
objmim.c:1443:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimIndexTermAsnRead':
objmim.c:1634:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimReferenceAsnRead':
objmim.c:1812:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c: In function 'MimLinkAsnRead':
objmim.c:2187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2186:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimAuthorAsnRead':
objmim.c:2360:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2359:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmim.c: In function 'MimPageAsnRead':
objmim.c:2525:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmim.c:2524:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objvalid.c
objvalid.c: In function 'FieldRuleAsnRead':
objvalid.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:87:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'FieldSetAsnRead':
objvalid.c:256:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:253:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'FieldSetAsnWrite':
objvalid.c:309:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'DependentFieldRuleAsnRead':
objvalid.c:390:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:389:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'DependentFieldSetAsnRead':
objvalid.c:573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:570:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'DependentFieldSetAsnWrite':
objvalid.c:626:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'CommentRuleAsnRead':
objvalid.c:708:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:707:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objvalid.c: In function 'CommentSetAsnRead':
objvalid.c:898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objvalid.c:895:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objvalid.c: In function 'CommentSetAsnWrite':
objvalid.c:951:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mimapi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cddapi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqport.c
seqport.c: In function 'productLoc_to_locationLoc':
seqport.c:4153:13: warning: variable 'is_cdregion' set but not used [-Wunused-but-set-variable]
Boolean is_cdregion = FALSE;
^
seqport.c: In function 'NaLocFromNaInterval':
seqport.c:4483:8: warning: variable 'p_end_pos' set but not used [-Wunused-but-set-variable]
Int4 p_end_pos; /*the end of the product sequence in the current loc*/
^
seqport.c: In function 'dnaLoc_to_aaLoc':
seqport.c:4599:18: warning: variable 'cds_right' set but not used [-Wunused-but-set-variable]
Int4 cds_left, cds_right;
^
seqport.c:4599:8: warning: variable 'cds_left' set but not used [-Wunused-but-set-variable]
Int4 cds_left, cds_right;
^
seqport.c: In function 'DeltaRevComp':
seqport.c:5281:21: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
DeltaSeqPtr dsp, dspnext;
^
seqport.c: In function 'SeqSearchEnterNucWord':
seqport.c:6822:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
Int2 next, patLen, state;
^
seqport.c: In function 'ProtSearchEnterProtWord':
seqport.c:7696:18: warning: variable 'patLen' set but not used [-Wunused-but-set-variable]
Int2 next, patLen, state;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sequtil.c
sequtil.c: In function 'GetPointsForLeftAndRightOffsets':
sequtil.c:7959:11: warning: variable 'first_strand' set but not used [-Wunused-but-set-variable]
Uint1 first_strand, last_strand;
^
sequtil.c: In function 'SeqPointWriteEx':
sequtil.c:8492:15: warning: variable 'fuzzlen' set but not used [-Wunused-but-set-variable]
Int4 fuzzlen, id_len;
^
sequtil.c: In function 'TaxNameFromCommon':
sequtil.c:8648:5: warning: missing braces around initializer [-Wmissing-braces]
"Chinese hamsters", "Cricetulus sp."
^
sequtil.c:8648:5: warning: (near initialization for 'taxcommon[0]') [-Wmissing-braces]
sequtil.c: In function 'GetBestScoreAndEvalueFromScorePtr':
sequtil.c:9470:48: warning: variable 'sum_set' set but not used [-Wunused-but-set-variable]
Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
^
sequtil.c: In function 'SeqIdFromAccessionEx':
sequtil.c:10070:38: warning: variable 'sip2' set but not used [-Wunused-but-set-variable]
SeqIdPtr sip2;
^
sequtil.c: In function 'GenericCompressDNAEx':
sequtil.c:1328:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'BSCompressDNAOld':
sequtil.c:1521:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'BSConvertSeq':
sequtil.c:924:15: warning: 'byte_from' may be used uninitialized in this function [-Wmaybe-uninitialized]
byte_from <<= lshift_from;
^
sequtil.c: In function 'SeqLocCoverage':
sequtil.c:6875:12: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqIdPtr sip;
^
sequtil.c: In function 'GetThePointForOffsetEx':
sequtil.c:7919:14: warning: 'last_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (last_strand == Seq_strand_minus)
^
sequtil.c:7900:14: warning: 'first_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (first_strand == Seq_strand_minus)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prtutil.c
prtutil.c: In function 'StdFormatPrint':
prtutil.c:1422:10: warning: unused variable 'ptr' [-Wunused-variable]
CharPtr ptr = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from simple.c:69:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
#define RNA_QUAL &at[2231]
^
../include/all.h:5745:0: note: this is the location of the previous definition
#define RNA_QUAL &at[1023]
^
simple.c: In function 'SimpleSeqAsnRead':
simple.c:212:15: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
b <<= 4;
^
simple.c:170:17: note: 'b' was declared here
Uint1 base, b;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tofasta.c
tofasta.c: In function 'DoSpecialDefline':
tofasta.c:1407:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr gene = NULL;
^
tofasta.c: At top level:
tofasta.c:3072:16: warning: 'get_descr_on_top' defined but not used [-Wunused-function]
static Boolean get_descr_on_top (GatherContextPtr gcp)
^
tofasta.c:3101:16: warning: 'get_descr' defined but not used [-Wunused-function]
static Boolean get_descr (GatherContextPtr gcp)
^
tofasta.c:3196:19: warning: 'IndexedGatherDescrOnBioseq' defined but not used [-Wunused-function]
static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
^
tofasta.c:3359:19: warning: 'GetCDSProtUnindexed' defined but not used [-Wunused-function]
static SeqFeatPtr GetCDSProtUnindexed (
^
tofasta.c:3445:19: warning: 'GatherSeqFeatProt' defined but not used [-Wunused-function]
static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
^
tofasta.c:3479:19: warning: 'GatherGenesForCDS' defined but not used [-Wunused-function]
static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
^
tofasta.c: In function 'FastaReadSequenceInternalEx':
tofasta.c:2476:43: warning: 'mask_to' may be used uninitialized in this function [-Wmaybe-uninitialized]
mask_sint->to = mask_to;
^
tofasta.c: In function 'FastaToSeqEntryInternalExEx':
tofasta.c:2852:19: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
ungetc(ch, fd);
^
tofasta.c:2672:25: warning: 'firstchar' may be used uninitialized in this function [-Wmaybe-uninitialized]
const Char PNTR firstchar;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tofile.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tomedlin.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF valid.c
valid.c: In function 'Valid1GatherProc':
valid.c:2238:22: warning: variable 'sc_valid' set but not used [-Wunused-but-set-variable]
EFieldValid sc_valid;
^
valid.c: In function 'ValidateSeqIdCase':
valid.c:3342:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateGenProdSet':
valid.c:5551:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'CountAdjacentProc':
valid.c:6193:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateBioseqInst':
valid.c:6584:19: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
Uint1 tech;
^
valid.c:6526:19: warning: variable 'prot' set but not used [-Wunused-but-set-variable]
SeqFeatPtr prot;
^
valid.c: In function 'ValidateBioSource':
valid.c:13688:19: warning: variable 'id' set but not used [-Wunused-but-set-variable]
Int4 id;
^
valid.c: In function 'ValidateDblink':
valid.c:14737:21: warning: variable 'gcp' set but not used [-Wunused-but-set-variable]
GatherContextPtr gcp;
^
valid.c: In function 'ValidateSeqDescrCommon':
valid.c:14795:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
PubdescPtr pdp;
^
valid.c: In function 'ValidateBioseqContextIndexed':
valid.c:17742:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
^
valid.c:17154:41: warning: variable 'utr3gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr cdsgene, utr5gene, utr3gene;
^
valid.c: In function 'ValidateBarcodeIndexNumber':
valid.c:18667:21: warning: variable 'bin_len' set but not used [-Wunused-but-set-variable]
Int4 bin_len;
^
valid.c: In function 'ValidateBioseqContext':
valid.c:18775:19: warning: variable 'taxname' set but not used [-Wunused-but-set-variable]
CharPtr taxname = NULL;
^
valid.c: In function 'ValidateRptUnit':
valid.c:20323:32: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean badchars, found, just_nuc_letters, multi_rpt_unit;
^
valid.c: In function 'CheckForCommonCDSProduct':
valid.c:22238:19: warning: variable 'is_nw' set but not used [-Wunused-but-set-variable]
Boolean is_nw = FALSE;
^
valid.c:22235:19: warning: variable 'is_nc' set but not used [-Wunused-but-set-variable]
Boolean is_nc = FALSE;
^
valid.c: In function 'CheckForIllegalDbxref':
valid.c:22617:16: warning: variable 'id' set but not used [-Wunused-but-set-variable]
Int4 id;
^
valid.c: In function 'ValidateAnticodon':
valid.c:23348:53: warning: variable 'circular' set but not used [-Wunused-but-set-variable]
ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
^
valid.c:23347:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
^
valid.c: In function 'IsGeneXrefRedundant':
valid.c:24599:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
valid.c: In function 'ValidateSeqFeat':
valid.c:24763:19: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
valid.c:24741:19: warning: variable 'pdp' set but not used [-Wunused-but-set-variable]
PubdescPtr pdp;
^
valid.c: In function 'CdTransCheck':
valid.c:26675:19: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'SpliceCheckEx':
valid.c:27477:19: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
valid.c: In function 'CdsProductIdCheck':
valid.c:27823:15: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
valid.c: In function 'ValidateSeqLoc':
valid.c:27887:19: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
^
valid.c:27886:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqLocPtr tmp, prev;
^
valid.c: At top level:
valid.c:1415:16: warning: 'IsNotUnclassifiedExcept' defined but not used [-Wunused-function]
static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
^
valid.c:4089:13: warning: 'FindLongIdsThatCollideWhenTruncated' defined but not used [-Wunused-function]
static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
^
valid.c:5438:13: warning: 'CheckMutSetSources' defined but not used [-Wunused-function]
static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
^
valid.c:6450:13: warning: 'ReportLongSeqId' defined but not used [-Wunused-function]
static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
^
valid.c:9394:16: warning: 'ConsistentWithC' defined but not used [-Wunused-function]
static Boolean ConsistentWithC (Char ch)
^
valid.c:12157:16: warning: 'LatLonIsValid' defined but not used [-Wunused-function]
static Boolean LatLonIsValid (CharPtr name)
^
valid.c:12959:16: warning: 'LatLonInRange' defined but not used [-Wunused-function]
static Boolean LatLonInRange (
^
valid.c:13056:16: warning: 'CountryIsClosestToLatLon' defined but not used [-Wunused-function]
static Boolean CountryIsClosestToLatLon (
^
valid.c:18292:19: warning: 'ListFeaturesContainedInLocation' defined but not used [-Wunused-function]
static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
^
valid.c:18342:28: warning: 'MultiGeneOverlapFree' defined but not used [-Wunused-function]
static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
^
valid.c:24281:16: warning: 'CouldExtendPartial' defined but not used [-Wunused-function]
static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF valapi.c
valapi.c: In function 'DoesStringMatchExpression':
valapi.c:253:15: warning: variable 'errstr' set but not used [-Wunused-but-set-variable]
const char *errstr;
^
valapi.c: In function 'ReorderStructuredCommentFields':
valapi.c:777:82: warning: unused variable 'ufp_last' [-Wunused-variable]
UserFieldPtr ufp, ufp_prev = NULL, new_list = NULL, new_prev = NULL, ufp_next, ufp_last = NULL;
^
valapi.c:777:72: warning: unused variable 'ufp_next' [-Wunused-variable]
UserFieldPtr ufp, ufp_prev = NULL, new_list = NULL, new_prev = NULL, ufp_next, ufp_last = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF alignmgr.c
alignmgr.c: In function 'AlnMgrIndexParentSA':
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
sap->saip = (Pointer)AMAlignIndexFree(amaip);
^
alignmgr.c: In function 'AlnMgrGetNthBlockRange':
alignmgr.c:4182:21: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
AMAlignIndexPtr amaip;
^
alignmgr.c: In function 'AlnMgrMakeFakeMultipleEx':
alignmgr.c:5157:21: warning: variable 'nogap' set but not used [-Wunused-but-set-variable]
Boolean nogap;
^
alignmgr.c: In function 'AlnMgrMapBioseqToBioseq':
alignmgr.c:10840:19: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Uint1 gap;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignmgr.c:5405:13: warning: 'AlnMgrMergeNeighbors' defined but not used [-Wunused-function]
static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
^
alignmgr.c:10572:16: warning: 'am_merge_after_edit' defined but not used [-Wunused-function]
static Boolean am_merge_after_edit (SeqAlignPtr sap)
^
alignmgr.c:6123:18: warning: 'AlnMgrConstructOverlaps' defined but not used [-Wunused-function]
static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
^
alignmgr.c:6650:16: warning: 'AlnMgrJaggedIndex' defined but not used [-Wunused-function]
static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
^
alignmgr.c: In function 'AlnMgrUnpackSeqAlign':
alignmgr.c:1149:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
^
alignmgr.c: In function 'AlnMgrPropagateSeqIdsBySapList':
alignmgr.c:1755:23: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->next = sip_tmp2;
^
alignmgr.c: In function 'AlnMgrGetNthSeqRangeInSA':
alignmgr.c:4115:19: warning: 'tmp_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
*stop = tmp_end;
^
alignmgr.c:4113:20: warning: 'tmp_beg' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = tmp_beg;
^
alignmgr.c: In function 'am_is_consistent':
alignmgr.c:10114:43: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
^
alignmgr.c: In function 'AlnMgrGetSubAlign':
alignmgr.c:9097:15: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp = am_cleanupsalp(salp);
^
alignmgr.c: In function 'AlnMgrMakeMultByIntersectOnMaster':
alignmgr.c:5829:30: warning: 'sip_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp->master = SeqIdDup(sip);
^
alignmgr.c:5553:17: note: 'sip_tmp' was declared here
SeqIdPtr sip_tmp;
^
alignmgr.c:5885:21: warning: 'sip_tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip_tmp = sip_tmp->next;
^
alignmgr.c:5846:18: note: 'sip_tmp' was declared here
SeqIdPtr sip_tmp;
^
alignmgr.c:5865:11: warning: 'sip_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (sip && !done)
^
alignmgr.c:5845:18: note: 'sip_head' was declared here
SeqIdPtr sip_head;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF aliparse.c
aliparse.c: In function 's_IsInterleaved':
aliparse.c:929:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(s_configInfo.useMaybes == FALSE) &&
^
aliparse.c:823:20: warning: variable 'isMaybe' set but not used [-Wunused-but-set-variable]
Boolean isMaybe;
^
aliparse.c: In function 's_ProcessInterId':
aliparse.c:1000:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_ProcessInterSeq':
aliparse.c:1090:15: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr = NULL;
^
aliparse.c: In function 's_AnalyzeInterleaved':
aliparse.c:1193:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
^
aliparse.c: In function 's_ProcessContigId':
aliparse.c:1385:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_ProcessContigSeq':
aliparse.c:1476:18: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 's_AnalyzeContiguous':
aliparse.c:1603:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
^
aliparse.c: In function 's_CheckContext':
aliparse.c:2150:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(seqLinePtr->maybe == TRUE) &&
^
aliparse.c:2131:20: warning: variable 'errPtr' set but not used [-Wunused-but-set-variable]
ErrInfoPtr errPtr;
^
aliparse.c: In function 'PrintOutMultAlign':
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
for (d; d<spacer; d++)
^
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3227:17: warning: variable 'sdp' set but not used [-Wunused-but-set-variable]
SeqDescrPtr sdp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
aliparse.c:449:13: warning: 's_FreeRowList' defined but not used [-Wunused-function]
static void s_FreeRowList (ValNodePtr rowList)
^
aliparse.c:57:18: warning: 's_SegCompare' declared 'static' but never defined [-Wunused-function]
static int s_SegCompare(const void *i,
^
aliparse.c:3130:13: warning: 'PrintOutMultAlign' defined but not used [-Wunused-function]
static void PrintOutMultAlign(SeqAlignPtr sap)
^
aliparse.c:3186:13: warning: 'PrintOutSegs' defined but not used [-Wunused-function]
static void PrintOutSegs(SeqAlignPtr sap)
^
aliparse.c: In function 's_GetRowIdString':
aliparse.c:543:20: warning: 'newIdStr' may be used uninitialized in this function [-Wmaybe-uninitialized]
CharPtr newIdStr;
^
aliparse.c: In function 's_ProcessMaybes':
aliparse.c:696:21: warning: 'lastSeqPart' may be used uninitialized in this function [-Wmaybe-uninitialized]
lastSeqPart->next = newSeqPart;
^
aliparse.c:655:18: warning: 'currentIdStr' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (StringCmp(existingId->id,currentIdStr) == 0)
^
aliparse.c: In function 'Ali_Read':
aliparse.c:1355:14: warning: 'previousLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
^
aliparse.c:1154:20: note: 'previousLength' was declared here
Int4 previousLength;
^
aliparse.c:930:14: warning: 'seqLinePtr' may be used uninitialized in this function [-Wmaybe-uninitialized]
(seqLinePtr->maybe == FALSE))
^
aliparse.c:820:20: note: 'seqLinePtr' was declared here
SeqLineInfoPtr seqLinePtr;
^
aliparse.c: In function 'ALI_ConvertToNCBIData':
aliparse.c:3276:26: warning: 'sep_new' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignAddInSeqEntry (sep_head, sanp);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from aliread.c:6:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF alignval.c
alignval.c: In function 'ValidateSeqlengthInDenseSeg':
alignval.c:1214:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
^
alignval.c: In function 'PercentStringMatch':
alignval.c:1495:32: warning: variable 'max_len' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, min_len, k, max_len;
^
alignval.c: In function 'CheckAlnSeqLens':
alignval.c:1893:12: warning: variable 'aln_len' set but not used [-Wunused-but-set-variable]
Int4 aln_len, start, stop;
^
alignval.c: In function 'ValidateSeqAlign':
alignval.c:1991:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
MsgAnswer ans;
^
alignval.c: In function 'GetAlignmentColumnPercentIdentities':
alignval.c:2371:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
Int4 num_match;
^
alignval.c: In function 'WeightedAlignmentPercentIdentity':
alignval.c:2681:14: warning: variable 'num_match' set but not used [-Wunused-but-set-variable]
Int4 num_match;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignval.c:568:13: warning: 'delete_bioseqs' defined but not used [-Wunused-function]
static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
^
alignval.c:1476:16: warning: 'IsSipContainedInStdseg' defined but not used [-Wunused-function]
static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
^
alignval.c:1891:13: warning: 'CheckAlnSeqLens' defined but not used [-Wunused-function]
static void CheckAlnSeqLens (SeqAlignPtr salp)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
sqnutil1.c: In function 'GeneExtendFunc':
sqnutil1.c:2514:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
sqnutil1.c: In function 'ParseAnticodon':
sqnutil1.c:3961:14: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
sqnutil1.c: In function 'ParseCodeBreak':
sqnutil1.c:4081:17: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
sqnutil1.c: In function 'CleanOrgModListEx':
sqnutil1.c:6276:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if (last->subtype == omp->subtype &&
^
sqnutil1.c: In function 'CleanUpPubdescAuthors':
sqnutil1.c:9213:20: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
ValNodePtr PNTR prev;
^
sqnutil1.c: In function 'RemoveUnnecessaryGeneXrefs':
sqnutil1.c:14155:24: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil1.c: In function 'LinkTwoFeatures':
sqnutil1.c:18204:25: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
SeqFeatXrefPtr xref, prev_xref, next_xref;
^
sqnutil1.c: In function 'RemoveBadCodonRecognizedCallback':
sqnutil1.c:18750:13: warning: variable 'rcodon' set but not used [-Wunused-but-set-variable]
Uint1 rcodon [4];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil1.c:2509:16: warning: 'GeneExtendFunc' defined but not used [-Wunused-function]
static Boolean GeneExtendFunc (GatherContextPtr gcp)
^
sqnutil1.c:5290:13: warning: 'CleanupConsSplice' defined but not used [-Wunused-function]
static void CleanupConsSplice (GBQualPtr gbq)
^
sqnutil1.c:7645:16: warning: 'IsStringSingleToken' defined but not used [-Wunused-function]
static Boolean IsStringSingleToken (CharPtr str)
^
sqnutil1.c:10250:13: warning: 'SortGoTermsSfp' defined but not used [-Wunused-function]
static void SortGoTermsSfp (
^
sqnutil1.c:10364:16: warning: 'CleanUpSgml' defined but not used [-Wunused-function]
static CharPtr CleanUpSgml (
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
sqnutil2.c: In function 'FindResidueByName':
sqnutil2.c:5197:11: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Uint1 last;
^
sqnutil2.c: In function 'ReadFeatureTableEx':
sqnutil2.c:7202:18: warning: variable 'isnote' set but not used [-Wunused-but-set-variable]
Boolean isnote;
^
sqnutil2.c:7194:18: warning: variable 'endsinspace' set but not used [-Wunused-but-set-variable]
Boolean endsinspace;
^
sqnutil2.c: In function 'SeqEntryCopyReplace':
sqnutil2.c:9199:8: warning: variable 'type' set but not used [-Wunused-but-set-variable]
Uint1 type = 0;
^
sqnutil2.c: In function 'StreamingReadBioseq':
sqnutil2.c:10024:10: warning: variable 'level' set but not used [-Wunused-but-set-variable]
Int2 level;
^
sqnutil2.c: In function 'StreamAsnForDescriptors':
sqnutil2.c:10257:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
^
sqnutil2.c: In function 'StreamingReadWriteSeqSubmit':
sqnutil2.c:10637:1: warning: label 'ret' defined but not used [-Wunused-label]
ret:
^
sqnutil2.c: In function 'WriteAsnWithReplacedDescriptors':
sqnutil2.c:10676:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
^
sqnutil2.c: In function 'ReadFeatureTableFile':
sqnutil2.c:11627:18: warning: variable 'begin' set but not used [-Wunused-but-set-variable]
Int4 begin;
^
sqnutil2.c: In function 'ReadFastaOnly':
sqnutil2.c:11821:18: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
Char seqid [2048];
^
sqnutil2.c: In function 'ReadDeltaFastaWithEmptyDefline':
sqnutil2.c:12352:29: warning: variable 'seqid' set but not used [-Wunused-but-set-variable]
Char line [4096], seqid [2048];
^
sqnutil2.c: In function 'PrintQualityScoresToBuffer':
sqnutil2.c:12958:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil2.c: In function 'GetScoresbySeqId':
sqnutil2.c:13367:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil2.c: In function 'IsStringInSpanInList':
sqnutil2.c:17223:11: warning: variable 'str_val' set but not used [-Wunused-but-set-variable]
Int4 str_val;
^
sqnutil2.c:17221:27: warning: variable 'suffix_len' set but not used [-Wunused-but-set-variable]
Int4 prefix_len = 0, suffix_len;
^
sqnutil2.c: In function 'CreateStructuredCommentsFromFile':
sqnutil2.c:19251:35: warning: variable 'vnp_h' set but not used [-Wunused-but-set-variable]
ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
^
sqnutil2.c: In function 'AlignmentIntervalToString':
sqnutil2.c:19615:14: warning: variable 'target_strand' set but not used [-Wunused-but-set-variable]
Uint1 target_strand;
^
sqnutil2.c:19614:14: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
Int4 seq_len;
^
sqnutil2.c: In function 'AdjustForConsensusSpliceCallback':
sqnutil2.c:20781:33: warning: variable 'partial5_last' set but not used [-Wunused-but-set-variable]
Boolean partial5, partial3, partial5_last, partial3_last, first = TRUE;
^
sqnutil2.c: In function 'RemoveGIProc':
sqnutil2.c:21356:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil2.c:4661:16: warning: 'IsNonSeqChar' defined but not used [-Wunused-function]
static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
^
sqnutil2.c:8266:16: warning: 'DoesSeqEntryAccessionMatchList' defined but not used [-Wunused-function]
static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
^
sqnutil2.c:16055:13: warning: 'RevCompFeatsOnBioseq' defined but not used [-Wunused-function]
static void RevCompFeatsOnBioseq (BioseqPtr bsp)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
sqnutil3.c: In function 'BspLinkCDSmRNAbyOverlap':
sqnutil3.c:526:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil3.c: In function 'CautiousSeqEntryCleanup':
sqnutil3.c:2265:16: warning: variable 'taxserver' set but not used [-Wunused-but-set-variable]
Boolean taxserver;
^
sqnutil3.c: In function 'ConvertSegSetsToDeltaSequences':
sqnutil3.c:3376:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp, new_bsp = NULL;
^
sqnutil3.c:3370:26: warning: variable 'prev_sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sub_sep, prev_sep, next_sep;
^
sqnutil3.c: In function 'MakeSequinDataFromAlignmentEx':
sqnutil3.c:5124:32: warning: variable 'num_sets' set but not used [-Wunused-but-set-variable]
Int4 index, curr_seg, num_sets;
^
sqnutil3.c:5118:26: warning: variable 'salp_last' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp_list, salp_last;
^
sqnutil3.c:5118:15: warning: variable 'salp_list' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp_list, salp_last;
^
sqnutil3.c: In function 'GetCDSformRNA':
sqnutil3.c:19157:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sqnutil3.c: In function 'FindTextInFlatfileEx':
sqnutil3.c:20891:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
Boolean okay;
^
sqnutil3.c: In function 'CheckForTitleAuthorConflicts':
sqnutil3.c:21972:14: warning: variable 'author_conflict' set but not used [-Wunused-but-set-variable]
Boolean author_conflict = FALSE;
^
sqnutil3.c: In function 'SortVnpByBspProjectId':
sqnutil3.c:25733:31: warning: the comparison will always evaluate as 'true' for the address of 'vnp2' will never be NULL [-Waddress]
if (vnp1 != NULL &&& vnp2 != NULL) {
^
sqnutil3.c: In function 'GetDiscrepancyItemTextEx':
sqnutil3.c:28202:21: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
Boolean special_flag = FALSE;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sqnutil3.c:9621:19: warning: 'FreePrefixCheckList' defined but not used [-Wunused-function]
static ValNodePtr FreePrefixCheckList (ValNodePtr prefix_list)
^
sqnutil3.c:9672:25: warning: 'InconsistentLocusTagPrefix' defined but not used [-Wunused-function]
static ClickableItemPtr InconsistentLocusTagPrefix (PrefixCheckPtr pcp)
^
sqnutil3.c:9755:13: warning: 'GeneLocusTagDiscrepancyCallback' defined but not used [-Wunused-function]
static void GeneLocusTagDiscrepancyCallback (ValNodePtr item_list, Pointer userdata)
^
sqnutil3.c:10252:13: warning: 'ExtractVnpByStringSearch' defined but not used [-Wunused-function]
static void ExtractVnpByStringSearch (ValNodePtr PNTR list, CharPtr search)
^
sqnutil3.c:13399:16: warning: 'ContainsBracketsOrParentheses' defined but not used [-Wunused-function]
static Boolean ContainsBracketsOrParentheses (CharPtr pattern, CharPtr search)
^
sqnutil3.c:16581:24: warning: 'IntervalPairFree' defined but not used [-Wunused-function]
static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
^
sqnutil3.c:18676:24: warning: 'SortVnpByHaplotypeThenSequenceAllowNDiff' defined but not used [-Wunused-function]
static int LIBCALLBACK SortVnpByHaplotypeThenSequenceAllowNDiff (VoidPtr ptr1, VoidPtr ptr2)
^
sqnutil3.c:19971:16: warning: 'FeatureCountHasNumFeats' defined but not used [-Wunused-function]
static Boolean FeatureCountHasNumFeats (ValNodePtr vnp, Pointer data)
^
sqnutil3.c:23725:13: warning: 'FindSuspectrRNAProductsCallback' defined but not used [-Wunused-function]
static void FindSuspectrRNAProductsCallback (SeqFeatPtr sfp, Pointer data)
^
sqnutil3.c:31396:13: warning: 'FindBadGPS' defined but not used [-Wunused-function]
static void FindBadGPS (BioseqPtr bsp, Pointer userdata)
^
sqnutil3.c:31404:1: warning: 'BarcodeTestForSeqEntry' defined but not used [-Wunused-function]
BarcodeTestForSeqEntry
^
sqnutil3.c:33544:13: warning: 'TestLatLonFormatting' defined but not used [-Wunused-function]
static void TestLatLonFormatting (FILE *fp)
^
sqnutil3.c: In function 'LinkCDSmRNAbyLabelAndLocationCallback':
sqnutil3.c:889:23: warning: 'best_diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (diff < best_diff) {
^
sqnutil3.c: In function 'ValidateInferenceQualifier':
sqnutil3.c:6033:6: warning: 'rest' may be used uninitialized in this function [-Wmaybe-uninitialized]
ch = *rest;
^
sqnutil3.c:6087:13: warning: 'best' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (best == 12) {
^
sqnutil3.c: In function 'tRNASameStrandBioseqCallback':
sqnutil3.c:16126:8: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (strand == Seq_strand_minus) {
^
sqnutil3.c: In function 'CheckForDivConflicts':
sqnutil3.c:7901:28: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
else ValNodeAddPointer(&(grp_sdp[i]), OBJ_SEQDESC, sdp);
^
sqnutil3.c: In function 'FindMismatchedComments':
sqnutil3.c:25390:47: warning: 'sdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
^
sqnutil3.c: In function 'FixCountryColons':
sqnutil3.c:7523:14: warning: 'biop' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (ssp = biop->subtype; ssp != NULL; ssp = ssp->next) {
^
sqnutil3.c: In function 'AddmRNAForCDS':
sqnutil3.c:19565:3: warning: 'rna' may be used uninitialized in this function [-Wmaybe-uninitialized]
return rna;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
sqnutil4.c: In function 'ListClauses':
sqnutil4.c:8272:43: warning: variable 'twobefore' set but not used [-Wunused-but-set-variable]
FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
^
sqnutil4.c: In function 'SmashOneTallClause':
sqnutil4.c:9576:20: warning: variable 'subclause_featlist' set but not used [-Wunused-but-set-variable]
ValNodePtr subclause_featlist;
^
sqnutil4.c: In function 'GetFeatureClauseForSeg':
sqnutil4.c:10448:21: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start, stop;
^
sqnutil4.c: In function 'IsAmplifiedMiscFeat':
sqnutil4.c:10701:9: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& (StringNICmp (sfp->comment, phrase1, StringLen (phrase1)) == 0)
^
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:13849:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sqnutil4.c: In function 'ExtraCDSCreationActions':
sqnutil4.c:14728:28: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr psep, nsep;
^
sqnutil4.c: In function 'TESTDisplayQualCombo':
sqnutil4.c:15752:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Int4 val;
^
sqnutil4.c: In function 'ConvertCDSToMatPeptideForOverlappingCDS':
sqnutil4.c:17198:15: warning: variable 'crp' set but not used [-Wunused-but-set-variable]
CdRegionPtr crp;
^
sqnutil4.c: In function 'AddNewUniqueAnnotations':
sqnutil4.c:17372:39: warning: variable 'sap_tmp_next' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
^
sqnutil4.c: In function 'AssignBioseqToLineageGroup':
sqnutil4.c:18024:27: warning: variable 'vnp_last' set but not used [-Wunused-but-set-variable]
ValNodePtr list, vnp, vnp_last = NULL;
^
sqnutil4.c: In function 'ImportNucleotideFASTASequencesFromFile':
sqnutil4.c:26442:17: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int4 count;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sqnutil4.c:63:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sqnutil4.c:4945:13: warning: 'CountFeatures' defined but not used [-Wunused-function]
static Int4 CountFeatures (
^
sqnutil4.c:9510:13: warning: 'RemoveFeats' defined but not used [-Wunused-function]
static void RemoveFeats (
^
sqnutil4.c:9674:13: warning: 'SmashTallClauses' defined but not used [-Wunused-function]
static void SmashTallClauses (
^
sqnutil4.c:9705:19: warning: 'RemoveAllButLastCDS' defined but not used [-Wunused-function]
static ValNodePtr RemoveAllButLastCDS (
^
sqnutil4.c:15584:16: warning: 'RemoveFieldFromUniqBioSrcGrpList' defined but not used [-Wunused-function]
static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
^
sqnutil4.c:15872:19: warning: 'ExpandOneComboListUsingAllPresentQuals' defined but not used [-Wunused-function]
static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
^
sqnutil4.c:15901:13: warning: 'TESTDisplayList' defined but not used [-Wunused-function]
static void TESTDisplayList (ValNodePtr new_list)
^
sqnutil4.c: In function 'ConvertProtToImpFunc':
sqnutil4.c:14023:13: warning: 'topOfGbqList' may be used uninitialized in this function [-Wmaybe-uninitialized]
sfp->qual = topOfGbqList;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF subutil.c
subutil.c: In function 'AddSeqLitToBioseq':
subutil.c:769:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
subutil.c: In function 'AddReferenceToSegmentedEntry':
subutil.c:1163:22: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqEntryPtr tmp, prev;
^
subutil.c: In function 'GetDNAConv':
subutil.c:1624:8: warning: array subscript has type 'char' [-Wchar-subscripts]
dnaconv[*ptr] = *ptr;
^
subutil.c: In function 'GetProteinConv':
subutil.c:1646:8: warning: array subscript has type 'char' [-Wchar-subscripts]
protconv[*ptr] = *ptr;
^
subutil.c: In function 'AddBasesToByteStore':
subutil.c:1669:9: warning: array subscript has type 'char' [-Wchar-subscripts]
residue = dnaconv[ch];
^
subutil.c: In function 'AddAAsToByteStore':
subutil.c:1700:9: warning: array subscript has type 'char' [-Wchar-subscripts]
residue = aaconv[ch];
^
subutil.c: In function 'CitArtBuild':
subutil.c:2683:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, tmp;
^
subutil.c: At top level:
subutil.c:3546:20: warning: 'TranslateCdRegionNew' defined but not used [-Wunused-function]
static SeqEntryPtr TranslateCdRegionNew (
^
subutil.c: In function 'AddGapToSegmentedEntry':
subutil.c:1140:27: warning: 'bsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->id = SeqIdDup(bsp->id);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF edutil.c
edutil.c: In function 'SeqLocsToDeltaSeqs':
edutil.c:795:14: warning: variable 'sip' set but not used [-Wunused-but-set-variable]
SeqIdPtr sip;
^
edutil.c: In function 'SeqLocCopyPart':
edutil.c:2243:13: warning: variable 'done' set but not used [-Wunused-but-set-variable]
Boolean done, started, wasa_null, hada_null;
^
edutil.c: In function 'IndexedSeqFeatsCopy':
edutil.c:2400:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
ValNodePtr region;
^
edutil.c: In function 'SeqFeatsCopy':
edutil.c:2504:16: warning: variable 'region' set but not used [-Wunused-but-set-variable]
ValNodePtr region;
^
edutil.c: In function 'SeqLocInsert':
edutil.c:3686:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff, numpnt, i, tpos;
^
edutil.c: In function 'SeqEdRecreateDeletedFeats':
edutil.c:4212:19: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SeqFeatPtr sfp;
^
edutil.c: In function 'SeqEdSeqLocInsert':
edutil.c:4512:8: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff, numpnt, i, tpos;
^
edutil.c: In function 'SeqEdSeqLocDelete':
edutil.c:5069:10: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int4 diff;
^
edutil.c: In function 'SeqEdInsertAdjustFeat':
edutil.c:5300:7: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c: In function 'SeqEdDeleteFromBsp':
edutil.c:6485:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c:6548:11: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& sfp->data.choice == SEQFEAT_CDREGION)
^
edutil.c:6437:21: warning: variable 'merge_mode' set but not used [-Wunused-but-set-variable]
Boolean merge_mode;
^
edutil.c:6428:21: warning: variable 'feats_altered' set but not used [-Wunused-but-set-variable]
Boolean feats_altered = FALSE;
^
edutil.c: In function 'BioseqCopyEx':
edutil.c:2152:25: warning: 'head' may be used uninitialized in this function [-Wmaybe-uninitialized]
newbsp->seq_ext = (Pointer)head;
^
edutil.c: In function 'BioseqInsert':
cc1: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow]
edutil.c: In function 'SeqEdInsert':
cc1: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
asn2ff1.c: In function 'asn2ff_print':
asn2ff1.c:289:17: warning: unused variable 'dsp' [-Wunused-variable]
DescrStructPtr dsp = NULL;
^
asn2ff1.c: In function 'Asn2ffJobCreate':
asn2ff1.c:351:18: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID = 0;
^
asn2ff1.c: In function 'SeqEntryToEntrez':
asn2ff1.c:498:15: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp = NULL;
^
asn2ff1.c: In function 'SeqLocToFlat':
asn2ff1.c:1518:19: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID=0;
^
asn2ff1.c: In function 'asn2ff_setup':
asn2ff1.c:1579:12: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp;
^
asn2ff1.c: In function 'PrintStatusLine':
asn2ff1.c:2197:15: warning: unused variable 'ptr' [-Wunused-variable]
CharPtr u, ptr=NULL;
^
asn2ff1.c: In function 'asn2gb_setup':
asn2ff1.c:2403:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff1.c:45:
asn2ff1.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff1.c:816:19: warning: 'SeqEntryToLinkStrEx' defined but not used [-Wunused-function]
static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
^
asn2ff1.c:2171:16: warning: 'find_user_object' defined but not used [-Wunused-function]
static Boolean find_user_object(BioseqPtr bsp)
^
asn2ff1.c:2189:13: warning: 'PrintStatusLine' defined but not used [-Wunused-function]
static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff1.c: In function 'asn2embl_setup':
asn2ff1.c:2754:7: warning: 'max' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (max == index+1) {
^
asn2ff1.c: In function 'asn2gp_setup':
asn2ff1.c:2942:4: warning: 'feat_num' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (index=0; index < feat_num; index++) {
^
asn2ff1.c: In function 'SeqEntryToGBFlatNoSeq':
asn2ff1.c:1292:15: warning: 'rsult' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean rsult;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
asn2ff2.c: In function 'GetStrForBankit':
asn2ff2.c:518:9: warning: unused variable 'i' [-Wunused-variable]
Int2 i=0, ptrlen = 0;
^
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:769:34: warning: unused variable 'string' [-Wunused-variable]
CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
^
asn2ff2.c: In function 'GP_GetSeqDescrComms':
asn2ff2.c:1163:10: warning: unused variable 'got_comment' [-Wunused-variable]
Boolean got_comment=FALSE;
^
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to 'int' [-Wreturn-type]
static ChoicePID(SeqIdPtr sid)
^
asn2ff2.c: In function 'GetGibbsqCommentLength':
asn2ff2.c:1600:7: warning: unused variable 'gibbsq' [-Wunused-variable]
Int4 gibbsq=0, total;
^
asn2ff2.c: In function 'GatherDescrByChoice':
asn2ff2.c:1864:8: warning: variable 'bspID' set but not used [-Wunused-but-set-variable]
Uint2 bspID;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff2.c:218:
asn2ff2.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff2.c:232:16: warning: 'has_comment' defined but not used [-Wunused-variable]
static Boolean has_comment;
^
asn2ff2.c:680:16: warning: 'GetEvidence' defined but not used [-Wunused-function]
static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff2.c:1190:16: warning: 'GetSPBlock' defined but not used [-Wunused-function]
static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
^
asn2ff2.c: In function 'GetCommentByChoice':
asn2ff2.c:829:8: warning: 'is_other' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_other == TRUE && mfp->completeness) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
asn2ff3.c: In function 'PutGeneFirst':
asn2ff3.c:1662:26: warning: unused variable 'qual_temp' [-Wunused-variable]
GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
^
asn2ff3.c:1661:10: warning: unused variable 'still_looking' [-Wunused-variable]
Boolean still_looking=TRUE;
^
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1746:9: warning: unused variable 'Locus_id' [-Wunused-variable]
Int4 Locus_id = 0;
^
asn2ff3.c: In function 'Add_gene_id':
asn2ff3.c:3306:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat=]
sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
^
asn2ff3.c: In function 'Add_trid':
asn2ff3.c:3712:7: warning: unused variable 'gi' [-Wunused-variable]
Int4 gi = -1;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff3.c:628:
asn2ff3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff3.c:3291:13: warning: 'Add_gene_id' defined but not used [-Wunused-function]
static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
^
asn2ff3.c: In function 'GettRNAaa':
asn2ff3.c:2207:6: warning: 'seq_code' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((table=SeqCodeTableFind (seq_code)) != NULL)
^
asn2ff3.c: In function 'Add_dbxref.isra.0':
asn2ff3.c:858:14: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (val[0] != '\0') {
^
asn2ff3.c: In function 'mRNAEvidenceComment':
asn2ff3.c:1832:10: warning: 'ne_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(temp, " %d %s ESTs", ne, ne_name);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
asn2ff4.c: In function 'FlatLocPoint':
asn2ff4.c:437:15: warning: variable 'order' set but not used [-Wunused-but-set-variable]
static Uint1 order[NUM_SEQID];
^
asn2ff4.c: In function 'do_FlatLoc':
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if ( ! FlatVirtLoc( bsp, slp))
^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to 'int' [-Wreturn-type]
static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
^
asn2ff4.c: In function 'CreateImpFeatFromProt':
asn2ff4.c:1659:14: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
asn2ff4.c: In function 'MatchNAGeneToFeat':
asn2ff4.c:2196:17: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
NoteStructPtr nsp; /* UNUSED */
^
asn2ff4.c: In function 'MatchAAGeneToFeat':
asn2ff4.c:2367:18: warning: variable 'nsp' set but not used [-Wunused-but-set-variable]
NoteStructPtr nsp; /* UNUSED */
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff4.c:273:
asn2ff4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff4.c: In function 'CheckNewSfpLoc.isra.0':
asn2ff4.c:1767:16: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
asn2ff5.c: In function 'format_cit_sub':
asn2ff5.c:1023:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
format == EMBLPEPT_FMT && afp->choice == 1)
^
asn2ff5.c:926:41: warning: variable 'need_space' set but not used [-Wunused-but-set-variable]
Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
^
asn2ff5.c: In function 'format_thesis':
asn2ff5.c:1213:20: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/embl_format = FALSE;
^
asn2ff5.c: In function 'format_book':
asn2ff5.c:1296:10: warning: variable 'embl_format' set but not used [-Wunused-but-set-variable]
Boolean embl_format = FALSE;
^
asn2ff5.c: In function 'format_jourarticle':
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (ip->pages != NULL)
^
asn2ff5.c: In function 'StripParanthesis':
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
temp++; *ptr_in++;
^
asn2ff5.c: In function 'PostARefErrMessage':
asn2ff5.c:3005:20: warning: variable 'ignore_this' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff5.c:177:
asn2ff5.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff5.c:188:26: warning: 'GetSubmitterName' declared 'static' but never defined [-Wunused-function]
static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
^
asn2ff5.c: In function 'FlatJournal':
asn2ff5.c:1051:11: warning: 'afp' may be used uninitialized in this function [-Wmaybe-uninitialized]
AffilPtr afp;
^
asn2ff5.c:2073:10: warning: 'temp' may be used uninitialized in this function [-Wmaybe-uninitialized]
temp = StringMove (temp," ");
^
asn2ff5.c:1946:23: note: 'temp' was declared here
CharPtr affil=NULL, temp, dup_pages=NULL, retval=NULL;
^
asn2ff5.c: In function 'CheckPubs':
asn2ff5.c:2772:24: warning: 'status' may be used uninitialized in this function [-Wmaybe-uninitialized]
PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
asn2ff6.c: In function 'AddGBQual':
asn2ff6.c:1327:18: warning: variable 'note' set but not used [-Wunused-but-set-variable]
GBQualPtr curq, note = NULL;
^
asn2ff6.c: In function 'BioseqGetGBDivCodeEx':
asn2ff6.c:1700:23: warning: variable 'diff' set but not used [-Wunused-but-set-variable]
Int2 tech, /*UNUSED*/diff, retval = 0;
^
asn2ff6.c: In function 'GR_PrintPubs':
asn2ff6.c:2297:41: warning: unused variable 'stop' [-Wunused-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2297:32: warning: unused variable 'start' [-Wunused-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2297:13: warning: variable 'pmid' set but not used [-Wunused-but-set-variable]
Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
^
asn2ff6.c:2296:10: warning: unused variable 'descr' [-Wunused-variable]
CharPtr descr = NULL;
^
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:17: warning: variable 'base_locus_max' set but not used [-Wunused-but-set-variable]
Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
^
asn2ff6.c: In function 'ValidateOtherAccession':
asn2ff6.c:2886:29: warning: unused variable 'FiveNum' [-Wunused-variable]
Boolean FirstLetter=FALSE, FiveNum = FALSE;
^
asn2ff6.c:2886:10: warning: unused variable 'FirstLetter' [-Wunused-variable]
Boolean FirstLetter=FALSE, FiveNum = FALSE;
^
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3498:20: warning: variable 'ncbi' set but not used [-Wunused-but-set-variable]
Boolean /*UNUSED*/ncbi = FALSE;
^
In file included from ../include/asn2ff6.h:142:0,
from asn2ff6.c:347:
asn2ff6.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff6.c:2883:13: warning: 'ValidateOtherAccession' defined but not used [-Wunused-function]
static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
^
asn2ff6.c: In function 'ValidateLocus':
asn2ff6.c:2786:44: warning: 'exp' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
^
asn2ff6.c: In function 'MakeBaseLocusAwp':
asn2ff6.c:3070:49: warning: 'num_of_digits' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 index, length, base_locus_max, name_len, num_of_digits, num_seg;
^
asn2ff6.c: In function 'AddExtraAccessions':
asn2ff6.c:3570:11: warning: 'si' may be used uninitialized in this function [-Wmaybe-uninitialized]
si->to = bsp->length - 1;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
asn2gnb1.c: In function 'IsWholeWordSubstr':
asn2gnb1.c:2092:19: warning: variable 'right' set but not used [-Wunused-but-set-variable]
Boolean left, right;
^
asn2gnb1.c: In function 'DoOneSection':
asn2gnb1.c:2363:24: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
asn2gnb1.c:2357:24: warning: variable 'bkmask' set but not used [-Wunused-but-set-variable]
BlockMask bkmask;
^
asn2gnb1.c: In function 'Count2Seg':
asn2gnb1.c:3215:18: warning: variable 'to' set but not used [-Wunused-but-set-variable]
Int4 to;
^
asn2gnb1.c:3213:18: warning: variable 'parent' set but not used [-Wunused-but-set-variable]
BioseqPtr parent;
^
asn2gnb1.c: At top level:
asn2gnb1.c:3492:3: warning: missing braces around initializer [-Wmissing-braces]
{TRUE, TRUE, TRUE, TRUE, TRUE,
^
asn2gnb1.c:3492:3: warning: (near initialization for 'flagTable[0].flags') [-Wmissing-braces]
asn2gnb1.c: In function 'SeqIdWriteForTable':
asn2gnb1.c:5571:13: warning: variable 'pdb' set but not used [-Wunused-but-set-variable]
pdb = NULL, general = NULL, gi = NULL;
^
asn2gnb1.c:5570:40: warning: variable 'patent' set but not used [-Wunused-but-set-variable]
SeqIdPtr accn = NULL, local = NULL, patent = NULL,
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb1.c:43:
asn2gnb1.c: In function 'DoImmediateFormat':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb1.c:6704:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb1.c:6683:20: warning: variable 'is_www' set but not used [-Wunused-but-set-variable]
Boolean is_www;
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb1.c:43:
asn2gnb1.c: In function 'asn2gnbk_format':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb1.c:6825:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb1.c: In function 'asn2gnbk_cleanup':
asn2gnb1.c:6871:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
asn2gnb1.c: In function 'SeqEntryToGnbk':
asn2gnb1.c:7057:22: warning: variable 'userdata' set but not used [-Wunused-but-set-variable]
Pointer userdata = NULL;
^
asn2gnb1.c:7052:22: warning: variable 'gbseq' set but not used [-Wunused-but-set-variable]
GBSeqPtr gbseq = NULL;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
asn2gnb2.c: In function 's_LocusAddSuffix':
asn2gnb2.c:206:11: warning: variable 'ch' set but not used [-Wunused-but-set-variable]
Char ch;
^
asn2gnb2.c: In function 'AddLocusBlock':
asn2gnb2.c:1323:66: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
^
asn2gnb2.c: In function 'AddDblinkBlock':
asn2gnb2.c:2756:22: warning: variable 'parentID' set but not used [-Wunused-but-set-variable]
Int4 parentID;
^
asn2gnb2.c: In function 'GetRefsOnBioseq':
asn2gnb2.c:5448:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
asn2gnb2.c:5445:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb2.c:5439:22: warning: variable 'right' set but not used [-Wunused-but-set-variable]
Int4 right;
^
asn2gnb2.c:5433:22: warning: variable 'left' set but not used [-Wunused-but-set-variable]
Int4 left;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb2.c:57:
asn2gnb2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
asn2gnb3.c: In function 'GetStatusForRefTrack':
asn2gnb3.c:601:22: warning: variable 'urf' set but not used [-Wunused-but-set-variable]
UserFieldPtr ufp, urf = NULL;
^
asn2gnb3.c: In function 'GetSourcesOnBioseq':
asn2gnb3.c:4151:22: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
asn2gnb3.c:4149:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start;
^
asn2gnb3.c:4148:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb3.c: In function 'GetFeatsOnCdsProduct':
asn2gnb3.c:5007:22: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
Boolean isRefSeq;
^
asn2gnb3.c: In function 'GetRemoteFeatsOnCdsProduct':
asn2gnb3.c:5155:20: warning: variable 'lastsfp' set but not used [-Wunused-but-set-variable]
SeqFeatPtr lastsfp;
^
asn2gnb3.c:5154:20: warning: variable 'lastsap' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr lastsap;
^
asn2gnb3.c:5153:20: warning: variable 'lastright' set but not used [-Wunused-but-set-variable]
Int4 lastright;
^
asn2gnb3.c:5152:20: warning: variable 'lastleft' set but not used [-Wunused-but-set-variable]
Int4 lastleft;
^
asn2gnb3.c:5151:20: warning: variable 'isRefSeq' set but not used [-Wunused-but-set-variable]
Boolean isRefSeq;
^
asn2gnb3.c: In function 'GetFeatsOnBioseq':
asn2gnb3.c:5376:22: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start;
^
asn2gnb3.c:5349:22: warning: variable 'icp' set but not used [-Wunused-but-set-variable]
IntCdsBlockPtr icp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
asn2gnb4.c: In function 'FormatFeatureBlockQuals':
asn2gnb4.c:3591:50: warning: "/*" within comment [-Wcomment]
StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
^
asn2gnb4.c:2969:24: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
asn2gnb4.c:2910:24: warning: variable 'at_end' set but not used [-Wunused-but-set-variable]
Boolean at_end = FALSE;
^
asn2gnb4.c: In function 'FF_asn2gb_www_featkey':
asn2gnb4.c:5180:16: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
CharPtr prefix = "?";
^
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:6354:22: warning: variable 'split' set but not used [-Wunused-but-set-variable]
Boolean split;
^
In file included from ../include/ncbi.h:58:0,
from asn2gnb4.c:42:
asn2gnb4.c: In function 'DoImmediateRemoteFeatureFormat':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb4.c:8448:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
asn2gnb4.c: In function 'FormatFeatureQuals':
../include/ncbistd.h:286:22: warning: comparison between 'enum <anonymous>' and 'enum <anonymous>' [-Wenum-compare]
#define MAX(a,b) ((a)>=(b)?(a):(b))
^
asn2gnb4.c:8521:19: note: in expansion of macro 'MAX'
max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
asn2gnb4.c: In function 'FormatFeatureBlockEx':
asn2gnb4.c:7398:24: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
oldscope = SeqEntrySetScope (sep);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
asn2gnb5.c: In function 'FormatCitBookArt':
asn2gnb5.c:1874:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
asn2gnb6.c: In function 'FlatLocElement':
asn2gnb6.c:2386:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (sintp->to > 0 &&
^
asn2gnb6.c: In function 'FormatContigBlock':
asn2gnb6.c:5401:20: warning: variable 'dspnext' set but not used [-Wunused-but-set-variable]
DeltaSeqPtr dspnext;
^
asn2gnb6.c: In function 'FormatSequenceBlock':
asn2gnb6.c:5855:21: warning: variable 'iasp' set but not used [-Wunused-but-set-variable]
IntAsn2gbSectPtr iasp;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function 'CkLabelType':
gbfeat.c:1529:33: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gbftglob.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gbparint.c
gbparint.c: In function 'Nlm_gbparselex':
gbparint.c:2128:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (*current_col != '\0')
^
gbparint.c: In function 'Nlm_gbparselex_ver':
gbparint.c:2514:24: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (*current_col != '\0')
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:113:8: warning: missing braces around initializer [-Wmissing-braces]
"Ala", 'A',
^
utilpars.c:113:8: warning: (near initialization for 'ParFlat_AA_array[0]') [-Wmissing-braces]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF utilpub.c
utilpub.c: In function 'FindCit':
utilpub.c:998:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
ImpFeatPtr /*UNUSED*/ifp;
^
utilpub.c: In function 'ChangeCitQual':
utilpub.c:1053:53: warning: variable 'pub' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
^
utilpub.c:1052:34: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
ValNodePtr PNTR vnpp, /*UNUSED*/descr;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ffprint.c
ffprint.c: In function 'FFBSPrint':
ffprint.c:347:19: warning: unused variable 'byte_sp' [-Wunused-variable]
ByteStorePtr byte_sp = NULL;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from ffprint.c:127:
ffprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
ffprint.c:420:16: warning: 'ff_print_insert' defined but not used [-Wunused-function]
static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF wprint.c
wprint.c: In function 'LocPrintGenome':
wprint.c:1696:14: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep = NULL;
^
wprint.c:1695:25: warning: unused variable 'b' [-Wunused-variable]
BioseqPtr bsp = NULL, b = NULL;
^
wprint.c:1695:13: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp = NULL, b = NULL;
^
wprint.c:1692:34: warning: unused variable 'temp' [-Wunused-variable]
static Char buf[14], val[166], temp[166];
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from wprint.c:51:
wprint.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
wprint.c:77:13: warning: 'link_pir' defined but not used [-Wunused-variable]
static Char link_pir[MAX_WWWBUF];
^
wprint.c:79:13: warning: 'link_gdb_map' defined but not used [-Wunused-variable]
static Char link_gdb_map[MAX_WWWBUF];
^
wprint.c: In function 'www_xref':
wprint.c:1378:18: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized]
ll = StringLen(prefix);
^
wprint.c:1377:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
l = StringLen(link);
^
wprint.c: In function 'www_xref_button':
wprint.c:1421:18: warning: 'prefix' may be used uninitialized in this function [-Wmaybe-uninitialized]
ll = StringLen(prefix);
^
wprint.c:1420:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
l = StringLen(link);
^
wprint.c: In function 'PrintSPBlock':
wprint.c:1570:13: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddLink(s);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF satutil.c
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1011:10: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
Boolean check_gap;
^
satutil.c: At top level:
satutil.c:168:16: warning: 'bk_map_one_location' defined but not used [-Wunused-function]
static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
^
satutil.c: In function 'CopyFeatureFromAlign':
satutil.c:1329:13: warning: 'c_slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_slp = map_one_location(c_slp, align, target_id, gap_choice, &r_start, &r_stop);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqmgr.c
seqmgr.c: In function 'SeqEntrySetScope':
seqmgr.c:313:13: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
seqmgr.c: In function 'ClearBioseqFindCache':
seqmgr.c:899:14: warning: variable 'smp' set but not used [-Wunused-but-set-variable]
SeqMgrPtr smp;
^
seqmgr.c: In function 'SeqMgrGetExtraDataForOmdp':
seqmgr.c:3736:14: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
ObjMgrPtr omp;
^
seqmgr.c: In function 'CheckForTransSplice':
seqmgr.c:5644:14: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
SeqLocPtr prev, tmp;
^
seqmgr.c: In function 'SeqEntryAsnOut':
seqmgr.c:11692:41: warning: variable 'aopp_desc' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL;
^
seqmgr.c:11692:23: warning: variable 'aopp_feat' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aopp_feat = NULL, aopp_desc = NULL;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqmgr.c:65:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
seqmgr.c: In function 'SeqMgrGetNextDescriptor':
seqmgr.c:9580:71: warning: 'bssp' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (omdp->datatype == OBJ_BIOSEQSET && bssp != NULL && bssp->seqentry != NULL) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmgr.c
objmgr.c: In function 'ObjMgrSelectFunc2':
objmgr.c:4031:22: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
objmgr.c: In function 'ObjMgrAlsoSelect':
objmgr.c:4109:55: warning: 'ssp' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqLocChangeIntervalle ((SeqLocPtr)ssp->region, (Int4)(SeqLocStart(region)), -1);
^
objmgr.c:4030:22: note: 'ssp' was declared here
SelStructPtr ssp, next;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gather.c
gather.c: In function 'AttachDataProc':
gather.c:4825:30: warning: variable 'into_seqentry' set but not used [-Wunused-but-set-variable]
Boolean no_good = FALSE, into_seqentry = FALSE;
^
gather.c: In function 'GatherSeqFeat':
gather.c:1570:42: warning: 'newid' may be used uninitialized in this function [-Wmaybe-uninitialized]
tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
^
gather.c:1530:86: warning: 'max_interval' may be used uninitialized in this function [-Wmaybe-uninitialized]
lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
^
gather.c:1570:42: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
^
gather.c:1531:40: warning: 'lrdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemCopy(lrdp, trdp, (size_t)(max_interval * sizeof(GatherRange)));
^
gather.c: In function 'gather_align_data':
gather.c:2447:33: warning: 'master_loc' may be used uninitialized in this function [-Wmaybe-uninitialized]
c_start = SeqLocStart(master_loc);
^
gather.c:2278:11: warning: 'h_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/
^
gather.c:2278:12: warning: 'h_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(!(h_stop < m_start || h_start > m_stop)) /*it is within the range*/
^
gather.c:2436:70: warning: 'mag_val' may be used uninitialized in this function [-Wmaybe-uninitialized]
t_range.right = t_range.left+len * mag_val -1;
^
gather.c: In function 'GatherBioseqFunc':
gather.c:3314:34: warning: 'tlen' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlen -= seglen;
^
gather.c:3296:40: warning: 'trunc_r' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (trunc_r)
^
gather.c:3291:39: warning: 'trunc_l' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (trunc_l)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF findrepl.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF codon.c
codon.c: In function 'make_cds_paragraph':
codon.c:262:7: warning: variable 'space_len' set but not used [-Wunused-but-set-variable]
Int4 space_len, i;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF jzcoll.c
jzcoll.c: In function 'load_default_matrix':
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
^
jzcoll.c:99:4: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
^
jzcoll.c:101:3: warning: array subscript has type 'char' [-Wchar-subscripts]
jzcoll.c: In function 'GetUseThisGi':
jzcoll.c:143:10: warning: unused variable 'retval' [-Wunused-variable]
Boolean retval=FALSE;
^
jzcoll.c: In function 'buffer_for_feature':
jzcoll.c:514:7: warning: unused variable 'i' [-Wunused-variable]
Int2 i=0;
^
jzcoll.c: In function 'ProcessTextInsertion':
jzcoll.c:878:7: warning: variable 'last_ins' set but not used [-Wunused-but-set-variable]
Int4 last_ins;
^
jzcoll.c: In function 'satcollfunc':
jzcoll.c:1723:12: warning: variable 'head' set but not used [-Wunused-but-set-variable]
SeqLocPtr head;
^
jzcoll.c:1721:8: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
jzcoll.c:1720:7: warning: variable 'current_pos' set but not used [-Wunused-but-set-variable]
Int4 current_pos;
^
jzcoll.c:1714:12: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp = NULL;
^
jzcoll.c: In function 'collect_anpnode_with_option':
jzcoll.c:3053:13: warning: unused variable 'prev' [-Wunused-variable]
ValNodePtr prev = NULL;
^
jzcoll.c: In function 'ck_seqfeat_extra':
jzcoll.c:3414:10: warning: unused variable 'has_gb' [-Wunused-variable]
Boolean has_gb = FALSE, has_med = FALSE;
^
jzcoll.c: In function 'load_open_close_sts_mark':
jzcoll.c:4010:10: warning: variable 'collected' set but not used [-Wunused-but-set-variable]
Boolean collected = FALSE;
^
jzcoll.c: In function 'FeatNodeCompProc':
jzcoll.c:4225:20: warning: variable 'gr2' set but not used [-Wunused-but-set-variable]
GatherRange gr1, gr2;
^
jzcoll.c:4225:15: warning: variable 'gr1' set but not used [-Wunused-but-set-variable]
GatherRange gr1, gr2;
^
jzcoll.c: At top level:
jzcoll.c:1654:16: warning: 'collect_sequence_label' defined but not used [-Wunused-function]
static Boolean collect_sequence_label(Uint1 format)
^
jzcoll.c:2316:16: warning: 'stop_collecting_alignment' defined but not used [-Wunused-function]
static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
^
jzcoll.c: In function 'load_text':
jzcoll.c:421:39: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
stdaa_res = SeqMapTableConvert(smtp, m_res);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF jzmisc.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF maputil.c
maputil.c: In function 'load_gene_list':
maputil.c:690:8: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Uint1 val;
^
maputil.c: In function 'gmarkfunc':
maputil.c:985:13: warning: variable 'syn' set but not used [-Wunused-but-set-variable]
ValNodePtr syn = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mconsist.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF macroapi.c
macroapi.c: In function 'AdvancedStringCompare':
macroapi.c:4416:23: warning: variable 'init_target_match_len' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, init_target_match_len = 0, target_match_len = 0;
^
macroapi.c: In function 'RemoveGBQualMatch':
macroapi.c:6919:27: warning: variable 'does_match' set but not used [-Wunused-but-set-variable]
Boolean rval = FALSE, does_match, do_remove;
^
macroapi.c: In function 'SetNameInPrimerList':
macroapi.c:10517:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
PCRPrimerPtr pp, prev_pp = NULL;
^
macroapi.c: In function 'SetSeqInPrimerList':
macroapi.c:10538:21: warning: variable 'prev_pp' set but not used [-Wunused-but-set-variable]
PCRPrimerPtr pp, prev_pp = NULL;
^
macroapi.c: In function 'GetCitListsForSeqEntry':
macroapi.c:15443:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
macroapi.c:15441:19: warning: variable 'okay' set but not used [-Wunused-but-set-variable]
Boolean okay;
^
macroapi.c: In function 'GetPubMLStatus':
macroapi.c:17914:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
CitSubPtr csp;
^
macroapi.c: In function 'ApplyPartial5SetActionToSeqFeat':
macroapi.c:24814:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'ApplyPartial3SetActionToSeqFeat':
macroapi.c:24937:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'ApplyPartialBothSetActionToSeqFeat':
macroapi.c:25004:16: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
macroapi.c: In function 'FindPosBeforeFeat':
macroapi.c:25301:15: warning: variable 'regulator' set but not used [-Wunused-but-set-variable]
SeqFeatPtr regulator = NULL, candidate;
^
macroapi.c: In function 'PerformAutofixInSeqEntry':
macroapi.c:28058:8: warning: unused variable 'num_created' [-Wunused-variable]
Int4 num_created = 0;
^
macroapi.c: In function 'AddFileDescriptors':
macroapi.c:28453:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (sdp = SeqDescAsnRead (aip, NULL)) {
^
macroapi.c: In function 'PreprocessAddDescriptorListMacro':
macroapi.c:30069:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (sdp = SeqDescAsnRead (aip, NULL)) {
^
macroapi.c: In function 'SummarizeRemoveOutsideAction':
macroapi.c:30940:11: warning: unused variable 'case_insensitive' [-Wunused-variable]
CharPtr case_insensitive = " (case insensitive)";
^
macroapi.c: In function 'GetObjectTableForTabTable':
macroapi.c:35366:63: warning: variable 'last' set but not used [-Wunused-but-set-variable]
ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
^
macroapi.c: In function 'CheckObjTableForExistingText':
macroapi.c:35930:14: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
macroapi.c: In function 'FixSuspectProductNamesInEntrezGene':
macroapi.c:38178:18: warning: variable 'prefix' set but not used [-Wunused-but-set-variable]
CharPtr prefix = NULL;
^
macroapi.c: At top level:
macroapi.c:1189:16: warning: 'IsObjectAppropriateForFieldPair' defined but not used [-Wunused-function]
static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
^
macroapi.c:2760:13: warning: 'OriginFromOriginName' defined but not used [-Wunused-function]
static Int4 OriginFromOriginName (CharPtr origin_name)
^
macroapi.c:4543:13: warning: 'TestAdvancedStringMatch' defined but not used [-Wunused-function]
static void TestAdvancedStringMatch (void)
^
macroapi.c:5435:16: warning: 'DoesLocationMatchConstraint' defined but not used [-Wunused-function]
static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
^
macroapi.c:10224:16: warning: 'HasMultiplePrimerSets' defined but not used [-Wunused-function]
static Boolean HasMultiplePrimerSets (CharPtr value)
^
macroapi.c:15632:13: warning: 'InitBatchExtraForAECRActionAndObjectList' defined but not used [-Wunused-function]
static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
^
macroapi.c:35102:16: warning: 'IsFieldTypeProteinDesc' defined but not used [-Wunused-function]
static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
^
macroapi.c:20392:13: warning: 'GetFieldsFromAECR' defined but not used [-Wunused-function]
static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
^
macroapi.c:26150:13: warning: 'GetDescriptorTypeFromDescriptorChoice' defined but not used [-Wunused-function]
static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
^
macroapi.c: In function 'GetFeatureListForProteinBioseq':
macroapi.c:34248:10: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (sfp != NULL)
^
macroapi.c: In function 'ConvertToSite':
macroapi.c:24223:7: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsp = GetBioseqGivenSeqLoc (slp, sfp->idx.entityID);
^
macroapi.c: In function 'ConvertToBond':
macroapi.c:24176:7: warning: 'slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsp = GetBioseqGivenSeqLoc (slp, sfp->idx.entityID);
^
macroapi.c: In function 'SetAuthorListFromString':
macroapi.c:14074:30: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
name_list = FreeNameList (1, vnp);
^
macroapi.c: In function 'GetSourceQualFromBioSource':
macroapi.c:10861:47: warning: 'subfield' may be used uninitialized in this function [-Wmaybe-uninitialized]
str = GetThreeFieldSubfield (ssp->name, subfield);
^
macroapi.c: In function 'GetMultipleSourceQualsFromBioSource':
macroapi.c:11008:45: warning: 'subfield' may be used uninitialized in this function [-Wmaybe-uninitialized]
str = GetThreeFieldSubfield (ssp->name, subfield);
^
macroapi.c: In function 'RemoveSourceQualFromBioSource':
macroapi.c:11189:52: warning: 'subfield' may be used uninitialized in this function [-Wmaybe-uninitialized]
rval |= RemoveThreeFieldSubfield (&(ssp->name), subfield);
^
macroapi.c: In function 'CaptureRefBlockSerialNumbers':
macroapi.c:15424:26: warning: 'ppr' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp->data.ptrvalue = ppr;
^
macroapi.c: In function 'SetFieldValueForObjectEx':
macroapi.c:13405:29: warning: 'ipp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_ipp[i] = ipp[i];
^
macroapi.c:13352:21: note: 'ipp' was declared here
Int4Ptr ipp, new_ipp;
^
macroapi.c:13378:29: warning: 'cpp' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_cpp[i] = cpp[i];
^
macroapi.c:13350:21: note: 'cpp' was declared here
CharPtr PNTR cpp;
^
macroapi.c: In function 'SetDBxrefForBioSource':
macroapi.c:22815:12: warning: 'dbtag' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (dbtag->tag == NULL)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salpedit.c
salpedit.c: In function 'SeqAlignInsert':
salpedit.c:162:12: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
StdSegPtr ssp;
^
salpedit.c:161:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
salpedit.c: At top level:
salpedit.c:158:20: warning: 'SeqAlignInsert' defined but not used [-Wunused-function]
static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
^
salpedit.c:254:16: warning: 'is_gap_segment' defined but not used [-Wunused-function]
static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
^
salpedit.c:1169:20: warning: 'JZSeqAlignMerge' defined but not used [-Wunused-function]
static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
^
salpedit.c:1281:13: warning: 'attach_new_align' defined but not used [-Wunused-function]
static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
^
salpedit.c:1387:14: warning: 'has_too_much_overlap' defined but not used [-Wunused-function]
static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
^
salpedit.c:1422:16: warning: 'convert_ddp_to_array' defined but not used [-Wunused-function]
static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
^
salpedit.c:1479:16: warning: 'filter_this_seg' defined but not used [-Wunused-function]
static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
^
salpedit.c:1560:13: warning: 'filter_wrong_orientation' defined but not used [-Wunused-function]
static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
^
salpedit.c:1605:16: warning: 'is_overlap' defined but not used [-Wunused-function]
static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
^
salpedit.c:1665:16: warning: 'free_diag_in_list' defined but not used [-Wunused-function]
static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
^
salpedit.c:2653:16: warning: 'FigureAlignRange' defined but not used [-Wunused-function]
static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
^
salpedit.c:2835:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
static void SeqAnnotWrite(SeqAlignPtr align)
^
salpedit.c:2939:20: warning: 'open_annot' defined but not used [-Wunused-function]
static SeqAnnotPtr open_annot(CharPtr f_name)
^
salpedit.c:3836:13: warning: 'get_align_list_len' defined but not used [-Wunused-function]
static Int4 get_align_list_len(SeqAlignPtr align)
^
salpedit.c:3850:13: warning: 'save_output' defined but not used [-Wunused-function]
static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
^
salpedit.c:3937:13: warning: 'reverse_seqloc' defined but not used [-Wunused-function]
static void reverse_seqloc (SeqLocPtr s_loc)
^
salpedit.c:3968:18: warning: 'create_fake_bioseq' defined but not used [-Wunused-function]
static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
^
salpedit.c:4016:18: warning: 'dup_mul_locs' defined but not used [-Wunused-function]
static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
^
salpedit.c:4046:16: warning: 'second_seq_has_gap' defined but not used [-Wunused-function]
static Boolean second_seq_has_gap(BioseqPtr s_bsp)
^
salpedit.c:4073:17: warning: 'get_best_id' defined but not used [-Wunused-function]
static SeqIdPtr get_best_id(BioseqPtr bsp)
^
salpedit.c:4120:18: warning: 'build_slp_for_gcontig' defined but not used [-Wunused-function]
static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salpstat.c
salpstat.c: In function 'DenseSegStats':
salpstat.c:310:10: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
^
salpstat.c: In function 'SeqAlignScoreFix':
salpstat.c:162:20: warning: 'sp_last' may be used uninitialized in this function [-Wmaybe-uninitialized]
sp_last->next = (ScorePtr) MemNew(sizeof(Score));
^
salpstat.c: In function 'DenseSegStats':
salpstat.c:382:18: warning: 'spp_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqPortFree(spp_2);
^
salpstat.c:381:18: warning: 'spp_1' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqPortFree(spp_1);
^
salpstat.c: In function 'SeqAlignWindowScoreFN':
salpstat.c:2038:45: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized]
residue_score[pos]=score;
^
salpstat.c:2020:34: warning: 'pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
qgaps_score[last_pos]=-(g_open+len*g_ext);
^
salpstat.c: In function 'SeqAlignWindowScore':
salpstat.c:2142:16: warning: 'scoreptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
FloatHiPtr scoreptr;
^
salpstat.c: In function 'SeqAlignSameIdMerge':
salpstat.c:2291:33: warning: 'salp_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
salp_prev->next = SeqAlignNew();
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salpacc.c
salpacc.c: In function 'SeqAlignStrand':
salpacc.c:334:20: warning: unused variable 'this_strand' [-Wunused-variable]
Uint1Ptr this_strand=Seq_strand_unknown;
^
salpacc.c: In function 'SeqAlignStop':
salpacc.c:561:13: warning: 'this_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(this_stop!=-1)
^
salpacc.c: In function 'SeqAlignMolType':
salpacc.c:626:7: warning: 'bsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (bsp!=NULL) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salprop.c
salprop.c: In function 'CopySeqLocFromSeqAlign':
salprop.c:291:12: warning: variable 'check_gap' set but not used [-Wunused-but-set-variable]
Boolean check_gap;
^
salprop.c: In function 'FeatListToProp':
salprop.c:1336:20: warning: variable 'feat_itemID' set but not used [-Wunused-but-set-variable]
Uint4 feat_itemID;
^
In file included from salprop.c:42:0:
salprop.c: At top level:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
static CharPtr GBFeat[number_GBFeat] = {
^
In file included from ../include/sqnutils.h:51:0,
from salprop.c:46:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salprop.c: In function 'ApplyNewSeqFeat':
salprop.c:620:11: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
j = stop - SeqLocStop(sfp_location);
^
salprop.c:514:17: note: 'stop' was declared here
stop,
^
salprop.c:727:13: warning: 'sfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
crp = (CdRegionPtr) (sfp->data.value.ptrvalue);
^
salprop.c:674:17: note: 'sfp' was declared here
SeqFeatPtr sfp;
^
salprop.c:733:24: warning: 'ppp.p5' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!sfp_p5 && ppp.p5)
^
salprop.c:679:17: note: 'ppp.p5' was declared here
ParTials ppp;
^
salprop.c:737:29: warning: 'ppp.p3' may be used uninitialized in this function [-Wmaybe-uninitialized]
SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
^
salprop.c:679:17: note: 'ppp.p3' was declared here
ParTials ppp;
^
salprop.c:861:33: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
^
salprop.c: In function 'MergeFunc':
salprop.c:1299:22: warning: 'to_overlapp' may be used uninitialized in this function [-Wmaybe-uninitialized]
target_slp=SeqLocIntNew (from_overlapp, to_overlapp, Seq_strand_plus, target_id);
^
salprop.c:1299:22: warning: 'from_overlapp' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salsap.c
salsap.c: In function 'DenseDiagToDenseSegFunc':
salsap.c:2912:30: warning: variable 'slpstop2' set but not used [-Wunused-but-set-variable]
slpstop1 = 0, slpstop2 = 0;
^
salsap.c:2912:16: warning: variable 'slpstop1' set but not used [-Wunused-but-set-variable]
slpstop1 = 0, slpstop2 = 0;
^
salsap.c:2911:31: warning: variable 'slpstart2' set but not used [-Wunused-but-set-variable]
Int4 slpstart1 = 0, slpstart2 = 0,
^
salsap.c:2911:16: warning: variable 'slpstart1' set but not used [-Wunused-but-set-variable]
Int4 slpstart1 = 0, slpstart2 = 0,
^
salsap.c:2909:28: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start1 = 0, start2 = 0,
^
salsap.c:2909:16: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1 = 0, start2 = 0,
^
In file included from ../include/sqnutils.h:51:0,
from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salsap.c:2157:16: warning: 'AreDenseSegSegmentsValid' defined but not used [-Wunused-function]
static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
^
salsap.c:3631:13: warning: 'FindSeqAlignCallback' defined but not used [-Wunused-function]
static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
^
salsap.c: In function 'SeqAlignEndExtend':
salsap.c:986:18: warning: 'n_strands' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr n_strands;
^
salsap.c: In function 'CleanStrandsSeqAlign':
salsap.c:1614:15: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 dim;
^
salsap.c:1669:39: warning: 'numseg' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
^
salsap.c:1611:15: warning: 'startp' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr startp;
^
salsap.c:1670:15: warning: 'lenp' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp=lenp[j];
^
salsap.c:1646:25: warning: 'csp' may be used uninitialized in this function [-Wmaybe-uninitialized]
csp->strands = NULL;
^
salsap.c:1648:25: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->strands = NULL;
^
salsap.c: In function 'LocalAlignToSeqAnnotDimn':
salsap.c:1851:9: warning: 'the_lens' may be used uninitialized in this function [-Wmaybe-uninitialized]
while ( j < lens )
^
salsap.c: In function 'multseqalign_from_pairseqalign':
salsap.c:4394:19: warning: 'strandp' may be used uninitialized in this function [-Wmaybe-uninitialized]
strandp++;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salstruc.c
salstruc.c: In function 'data_collect_arrange':
salstruc.c:1338:22: warning: variable 'maxscroll' set but not used [-Wunused-but-set-variable]
Int4 maxscroll;
^
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2203:29: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
Uint2 entityID, itemtype;
^
In file included from ../include/sqnutils.h:51:0,
from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from salstruc.c:41:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salstruc.c: In function 'prot_to_rputprot':
salstruc.c:739:6: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (k=0; k<j && *strp != '\0'; strp++, k++)
^
salstruc.c: In function 'data_collect_arrange':
salstruc.c:920:20: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID,
^
salstruc.c:872:19: note: 'entityID' was declared here
Uint2 entityID;
^
salstruc.c:1093:44: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
seq_info->entityID=entityID;
^
salstruc.c:1005:17: note: 'entityID' was declared here
Uint2 entityID;
^
salstruc.c: In function 'ShowAlignmentText':
salstruc.c:2194:19: warning: 'bspsip' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqIdPtr bspsip;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salutil.c
salutil.c: In function 'ReadBufferFromSap':
salutil.c:128:24: warning: variable 'buffstart' set but not used [-Wunused-but-set-variable]
Int4 bufflen, buffstart;
^
salutil.c:127:15: warning: variable 'sumstart' set but not used [-Wunused-but-set-variable]
Int4 sumstart;
^
salutil.c: In function 'IS_protSeqLoc':
salutil.c:594:11: warning: variable 'seq' set but not used [-Wunused-but-set-variable]
CharPtr seq;
^
salutil.c: In function 'ReplaceSeqIdWithSeqId':
salutil.c:1236:20: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
SeqEntryPtr oldscope;
^
salutil.c: In function 'del_ssp_fromid':
salutil.c:1722:24: warning: variable 'pressp' set but not used [-Wunused-but-set-variable]
SelEdStructPtr ssp, pressp = NULL;
^
salutil.c: In function 'checkCDSselect_forprotein':
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (feat != NULL)
^
salutil.c: In function 'NoMoreSegGapForOneAlignment':
salutil.c:3647:8: warning: implicit declaration of function 'AlnMgr2IndexSingleChildSeqAlign' [-Wimplicit-function-declaration]
AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
^
In file included from ../include/sqnutils.h:51:0,
from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salutil.c: In function 'sesp_to_slp':
salutil.c:1927:18: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 j,k;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF udvseq.c
udvseq.c: In function 'UDV_EncodeIdxFeat':
udvseq.c:448:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Int4Ptr) index_g);
^
udvseq.c: In function 'UDV_BigEncodeIdxFeat':
udvseq.c:473:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blocks.c
blocks.c: In function 'IndexBlocks':
blocks.c:928:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
segp_align->to = segp_align->to = -1;
^
blocks.c: In function 'IndexNewBlocks':
blocks.c:1084:19: warning: operation on 'segp_align->to' may be undefined [-Wsequence-point]
segp_align->to = segp_align->to = -1;
^
blocks.c: In function 'GetBlockOrientation':
blocks.c:2383:4: warning: 'orient' may be used uninitialized in this function [-Wmaybe-uninitialized]
return orient;
^
blocks.c: In function 'SAMergeBlocks':
blocks.c:2165:21: warning: 'tmp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp2 = tmp2->next;
^
blocks.c:1572:28: warning: 'tmp_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
merged->segp_head = tmp_head;
^
blocks.c:1470:27: warning: 'tmp_curr' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp1->prev = tmp_curr;
^
blocks.c:1709:27: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp1->prev = prev;
^
blocks.c:1670:34: warning: 'new_sabp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_sabp1->segp_head = tmp_head;
^
blocks.c: In function 'SASplitBlock':
blocks.c:2796:25: warning: 'segp2_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
segp2->prev = segp2_prev;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:309:4: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 0xffffff - */
^
pgppop.c:309:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
pgppop.c: In function 'DDV_WWW_get_CDS_minus':
pgppop.c:578:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
pgppop.c:576:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
numivals2=0;
^
pgppop.c: In function 'DDV_WWW_get_CDS_plus':
pgppop.c:700:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
pgppop.c: In function 'GetClrFromClrGlobal':
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
if (*((Uint4Ptr)rgb1 )== *((Uint4Ptr)rgb2)){
^
pgppop.c:1326:4: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
pgppop.c: In function 'DDV_DisplayTopScale':
pgppop.c:1549:7: warning: unused variable 'szBlank' [-Wunused-variable]
Char szBlank[TABLE_LEFT_MARGIN+5]={""};
^
pgppop.c: In function 'DDV_GetBLASTCompLine_1':
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
if (matrix[s][q]>0){
^
pgppop.c:1985:21: warning: array subscript has type 'char' [-Wchar-subscripts]
pgppop.c: In function 'DDV_DisplayDefaultAlign':
pgppop.c:3417:13: warning: unused variable 'sabp' [-Wunused-variable]
SABlockPtr sabp=NULL;/*indexed SeqAlign*/
^
pgppop.c: In function 'DDV_ShowSeqAlign':
pgppop.c:3760:10: warning: unused variable 'szPopSetAuth' [-Wunused-variable]
Char szPopSetAuth[INFO_SIZE+1]={""};
^
pgppop.c:3758:10: warning: unused variable 'szPopSetName' [-Wunused-variable]
Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
^
pgppop.c: In function 'DDV_PrintPopSetSummary':
pgppop.c:3931:9: warning: variable 'bPairwise' set but not used [-Wunused-but-set-variable]
Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
^
In file included from ../include/sqnutils.h:51:0,
from pgppop.c:298:
pgppop.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/asn2ff6.h:142:0,
from pgppop.c:300:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from pgppop.c:303:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
pgppop.c:563:13: warning: 'DDV_WWW_get_CDS_minus' defined but not used [-Wunused-function]
static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
^
pgppop.c:2090:13: warning: 'DDV_HideMaskedLetters' defined but not used [-Wunused-function]
static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
^
pgppop.c:2865:13: warning: 'DDV_GetGappedSequence' defined but not used [-Wunused-function]
static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
^
pgppop.c:2912:13: warning: 'DDV_PrintFastaGappedSequence' defined but not used [-Wunused-function]
static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
^
pgppop.c: In function 'DDV_PopDisplay2':
pgppop.c:1246:40: warning: 'pgp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (pgp2 && ((pgp2->StopLetter-pgp2->StartLetter+1)>=AbsLengthAli)) {
^
pgppop.c:1253:14: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp->next=NULL;
^
pgppop.c: In function 'DDV_Print_Sequence':
pgppop.c:1343:38: warning: 'idx' may be used uninitialized in this function [-Wmaybe-uninitialized]
StringCpy(szColor,DDV_PaletteRGB_NAV[idx]);
^
pgppop.c:1308:9: note: 'idx' was declared here
Uint4 i,idx;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF samutil.c
samutil.c: In function 'DDE_FreeStack':
samutil.c:1794:11: warning: operation on 'Index' may be undefined [-Wsequence-point]
Index = ++Index % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Add':
samutil.c:1849:22: warning: operation on 'pStack->StackMin' may be undefined [-Wsequence-point]
pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
^
samutil.c:1860:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Prev':
samutil.c:1924:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_Next':
samutil.c:1955:22: warning: operation on 'pStack->StackIndex' may be undefined [-Wsequence-point]
pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
^
samutil.c: In function 'DDE_ShowRow':
samutil.c:2222:26: warning: variable 'NumRows' set but not used [-Wunused-but-set-variable]
Int4 i, NumRows, HiRow, LowRow, tmp1, tmp2;
^
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3344:41: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr ptxtList, last_vnp, vnp;
^
samutil.c: In function 'DDE_RightAddNode':
samutil.c:3945:33: warning: variable 'new_vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, next_vnp, new_vnp;
^
samutil.c: In function 'DDE_LeftMergeAndAddNodeList':
samutil.c:3995:24: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
Boolean RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
^
samutil.c: In function 'DDE_RightMergeAndAddNodeList':
samutil.c:4051:38: warning: variable 'RetVal2' set but not used [-Wunused-but-set-variable]
Boolean RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
^
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4830:41: warning: variable 'Index' set but not used [-Wunused-but-set-variable]
Int4 NumBlocks, i, NumRows, Index, BlockCount=0;
^
samutil.c: In function 'DDE_CreateArraysForDenseSeg':
samutil.c:5266:22: warning: variable 'NumSegs' set but not used [-Wunused-but-set-variable]
Int4 NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
^
samutil.c: In function 'DDE_GetLastVNP':
samutil.c:3381:3: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return(last_vnp);
^
samutil.c: In function 'DDE_GetNumResidues':
samutil.c:3404:13: warning: 'to' may be used uninitialized in this function [-Wmaybe-uninitialized]
return((to-from) + 1);
^
samutil.c: In function 'DDE_RemoveGapFromEndOfAllRows':
samutil.c:3292:14: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(last_vnp);
^
samutil.c:3272:15: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
^
samutil.c: In function 'DDE_AddAGap':
samutil.c:2659:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (vnp == pMidtxtList) {
^
samutil.c:3375:15: note: 'last_vnp' was declared here
ValNodePtr last_vnp;
^
samutil.c: In function 'DDE_AddGapToEndOfAllRows':
samutil.c:3356:9: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp = DDE_AddAGap(pEditInfo, i, last_vnp, FALSE, TRUE);
^
samutil.c: In function 'DDE_ShiftLeftList':
samutil.c:4161:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
^
samutil.c: In function 'DDE_ShiftRowLeft1':
samutil.c:2563:13: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
^
samutil.c: In function 'DDE_RemoveGap':
samutil.c:3092:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
^
samutil.c: In function 'DDE_ShiftRowRight1':
samutil.c:2594:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
msap = (MsaTxtDispPtr) DDE_GetLastVNP(ptxtList)->data.ptrvalue;
^
samutil.c: In function 'DDE_LastColumnIsAligned':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
^
samutil.c: In function 'DDE_ShiftRightBoundaryLeft1':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
samutil.c:3375:15: note: 'last_vnp' was declared here
ValNodePtr last_vnp;
^
samutil.c: In function 'DDE_ShiftRightBoundaryRight1':
samutil.c:4448:8: warning: 'last_vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
^
samutil.c:3375:15: note: 'last_vnp' was declared here
ValNodePtr last_vnp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
ddvcolor.c: In function 'DDV_GetColor':
ddvcolor.c:1422:10: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
In file included from ../include/samutil.h:234:0,
from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from viewmgr.c:168:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
viewmgr.c:683:13: warning: 'ViewMgr_Swap' defined but not used [-Wunused-function]
static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
ddvcreate.c:292:4: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 0xffffff - */
^
ddvcreate.c:292:4: warning: (near initialization for 'DDV_PaletteRGB[0]') [-Wmissing-braces]
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_1':
ddvcreate.c:493:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
^
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_2':
ddvcreate.c:529:21: warning: variable 'more' set but not used [-Wunused-but-set-variable]
Boolean more;
^
ddvcreate.c: In function 'DDV_CreateDisplayFromIndex_EX2':
ddvcreate.c:779:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
^
ddvcreate.c:690:21: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Boolean last;
^
ddvcreate.c:686:21: warning: variable 'PopulateTo' set but not used [-Wunused-but-set-variable]
Int4 PopulateTo;
^
ddvcreate.c: In function 'DDV_DisplayNewBLAST':
ddvcreate.c:1942:16: warning: variable 'what' set but not used [-Wunused-but-set-variable]
Uint1 what;
^
ddvcreate.c: In function 'UDV_BigEncodeIdxFeat4':
ddvcreate.c:2878:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ddvcreate.c:249:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
ddvcreate.c:525:16: warning: 'DDV_CreateDisplayFromIndex_2' defined but not used [-Wunused-function]
static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
^
ddvcreate.c:2362:16: warning: 'DDV_DisplayBlastSAP' defined but not used [-Wunused-function]
static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
^
ddvcreate.c: In function 'UAMgrIntUAMsg':
ddvcreate.c:1141:11: warning: 'stop_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
ubd->from=Start;
^
ddvcreate.c:1158:73: note: 'stop_middle' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1195:18: warning: 'start_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
^
ddvcreate.c:1158:60: note: 'start_middle' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1201:60: warning: 'halfBspLengthSeqR' may be used uninitialized in this function [-Wmaybe-uninitialized]
UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
^
ddvcreate.c:1158:24: note: 'halfBspLengthSeqR' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c:1141:11: warning: 'halfBspLengthSeqL' may be used uninitialized in this function [-Wmaybe-uninitialized]
ubd->from=Start;
^
ddvcreate.c:1158:6: note: 'halfBspLengthSeqL' was declared here
Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
^
ddvcreate.c: In function 'DDV_PopulateDisplayForDisc':
ddvcreate.c:1048:16: warning: 'vnp_para' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp_list[n-1]=vnp_para;
^
ddvcreate.c: In function 'UABuildDescriptor2':
ddvcreate.c:1541:13: warning: 'stopcopy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
^
ddvcreate.c: In function 'DDV_DumpSAPInAFile':
ddvcreate.c:1798:20: warning: 'matrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
^
ddvcreate.c: In function 'DDV_ReadSeqBin':
ddvcreate.c:2571:13: warning: 'btr' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr btr;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF jsavlt.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF needleman.c
needleman.c: In function 'NeedlemanWunschQuadraticByLoc':
needleman.c:281:24: warning: variable 'bestDbPos' set but not used [-Wunused-but-set-variable]
Int4 bestQueryPos, bestDbPos; /*position ending best score in
^
needleman.c:281:10: warning: variable 'bestQueryPos' set but not used [-Wunused-but-set-variable]
Int4 bestQueryPos, bestDbPos; /*position ending best score in
^
needleman.c: In function 'FetchSequenceByLoc':
needleman.c:202:13: warning: 'query' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1 * query;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF txalign.c
txalign.c: In function 'addLinkoutForDefline':
txalign.c:706:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
Boolean hasLinkout=FALSE;
^
txalign.c: In function 'addLinkoutForBioseq':
txalign.c:774:13: warning: variable 'hasLinkout' set but not used [-Wunused-but-set-variable]
Boolean hasLinkout=FALSE;
^
txalign.c: In function 'load_align_sum_for_StdSeg':
txalign.c:2748:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
^
txalign.c: In function 'ShowAlignNodeText2Ex':
txalign.c:3548:13: warning: variable 'is_end' set but not used [-Wunused-but-set-variable]
Boolean is_end, strip_semicolon=TRUE;
^
txalign.c: In function 'Tx_PrintDefLine':
txalign.c:4597:7: warning: unused variable 'seqid_length' [-Wunused-variable]
Int4 seqid_length = 0, total_length = 0;
^
txalign.c: In function 'PrintDefLinesFromSeqAlignWithPath':
txalign.c:5012:39: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
} else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
^
txalign.c:5016:29: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (bsp = BioseqLockById(bestid)) {
^
txalign.c:4718:10: warning: unused variable 'ColumnDistance' [-Wunused-variable]
Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
^
txalign.c:4710:43: warning: unused variable 'sip_list' [-Wunused-variable]
SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
^
txalign.c:4706:17: warning: variable 'ptr_start' set but not used [-Wunused-but-set-variable]
Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
^
txalign.c: In function 'FormatScoreFromSeqAlignEx':
txalign.c:5335:25: warning: unused variable 't_adj' [-Wunused-variable]
Int4 m_adj = 0, t_adj = 0;
^
txalign.c:5334:29: warning: unused variable 'last_t_to' [-Wunused-variable]
Int4 last_m_to = 0, last_t_to = 0;
^
txalign.c: In function 'FSFPrintOneDefline':
txalign.c:5443:14: warning: variable 'seqid_len' set but not used [-Wunused-but-set-variable]
Int4 gi, seqid_len = 0;
^
txalign.c: In function 'FormatScoreFunc':
txalign.c:5660:13: warning: variable 'allocated' set but not used [-Wunused-but-set-variable]
Boolean allocated, first;
^
txalign.c: In function 'OOFShowSingleAlignment':
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
else if(matrix[line1[line_index]][line2[line_index]] > 0)
^
txalign.c:6326:13: warning: array subscript has type 'char' [-Wchar-subscripts]
txalign.c:6093:13: warning: variable 'lines' set but not used [-Wunused-but-set-variable]
Int4 i, lines, k, shift_info = 0;
^
txalign.c: In function 'OOFDisplayTraceBack1':
txalign.c:6581:33: warning: unused variable 'st' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c:6581:9: warning: unused variable 'tmp' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c: In function 'OOFDisplayTraceBack2':
txalign.c:6655:33: warning: unused variable 'st' [-Wunused-variable]
tmp[10] = " ", *st;
^
txalign.c: In function 'FDGetTaxNamesFromBioseq':
txalign.c:6757:21: warning: variable 'bdsp' set but not used [-Wunused-but-set-variable]
BlastDefLinePtr bdsp;
^
txalign.c: At top level:
txalign.c:630:16: warning: 'getNameInitials' defined but not used [-Wunused-function]
static CharPtr getNameInitials(CharPtr name){
^
txalign.c:828:19: warning: 'ProcessTextInsertion' declared 'static' but never defined [-Wunused-function]
static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
^
txalign.c:2338:16: warning: 'has_hit_in_region' defined but not used [-Wunused-function]
static Boolean has_hit_in_region(Uint1Ptr all_frame)
^
txalign.c:3433:1: warning: 'get_seq_id' defined but not used [-Wunused-function]
get_seq_id(SeqAlignPtr sap, Int2 index)
^
txalign.c: In function 'DrawTextToBuffer':
txalign.c:1806:53: warning: 'HTML_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
snprintf(docbuf+pos, size-pos, "%s",
^
txalign.c: In function 'CreateMaskByteStore':
txalign.c:940:4: warning: 'mol' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(mol == Seq_mol_aa)
^
txalign.c:988:8: note: 'mol' was declared here
Uint1 mol;
^
txalign.c: In function 'OOFShowSingleAlignment.isra.9':
txalign.c:6049:16: warning: 'pro_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
number = number/10;
^
txalign.c:6089:48: note: 'pro_line_start' was declared here
Int4 dna_index, pro_index, dna_line_start, pro_line_start;
^
txalign.c:6049:16: warning: 'dna_line_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
number = number/10;
^
txalign.c:6089:32: note: 'dna_line_start' was declared here
Int4 dna_index, pro_index, dna_line_start, pro_line_start;
^
txalign.c: In function 'find_score_in_align':
txalign.c:2598:33: warning: 'smtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
stdaa_res = SeqMapTableConvert(smtp, t_res);
^
txalign.c:2498:20: note: 'smtp' was declared here
SeqMapTablePtr smtp;
^
txalign.c:2459:31: warning: 't_spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(m_spp == NULL || t_spp == NULL) {
^
txalign.c:2394:23: note: 't_spp' was declared here
SeqPortPtr m_spp, t_spp;
^
txalign.c:2459:14: warning: 'm_spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(m_spp == NULL || t_spp == NULL) {
^
txalign.c:2394:16: note: 'm_spp' was declared here
SeqPortPtr m_spp, t_spp;
^
txalign.c: In function 'ShowAlignNodeText2Ex.isra.10':
txalign.c:2284:25: warning: 'm_len' may be used uninitialized in this function [-Wmaybe-uninitialized]
to = MIN(master_len-1, to + 3);
^
txalign.c:3543:10: note: 'm_len' was declared here
Int4 m_len; /*length of the master sequence*/
^
txalign.c: In function 'ShowTextAlignFromAnnot3':
txalign.c:1244:13: warning: 'retval' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean retval, matrix_loaded=FALSE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF fdlobj.c
fdlobj.c: In function 'BlastDefLineSetAsnRead':
fdlobj.c:69:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
fdlobj.c: In function 'BlastDefLineAsnRead':
fdlobj.c:202:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
alignmgr2.c: In function 'AlnMgr2IndexSingleDenseSegSA':
alignmgr2.c:875:13: warning: statement with no effect [-Wunused-value]
for (j; j<dsp->numseg && next == -1; j++)
^
alignmgr2.c: In function 'AlnMgr2CopySeg':
alignmgr2.c:2967:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (ldelta = ABS(s->beg - beg)) {
^
alignmgr2.c: In function 'AlnMgr2AddInNewPairwiseSA':
alignmgr2.c:3204:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (a = AlnMgr2GetNextSeqPiece(a)) {
^
alignmgr2.c:3206:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
^
alignmgr2.c:3216:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (A = AlnMgr2GetNextSeqPiece(A)) {
^
alignmgr2.c:3220:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
^
alignmgr2.c: In function 'AlnMgr2SetUnaln':
alignmgr2.c:5393:22: warning: variable 'dsp' set but not used [-Wunused-but-set-variable]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2PrintSeqAlign':
alignmgr2.c:5606:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (more = AlnMgr2GetNextAlnBit(sap, amp))
^
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5702:21: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6068:22: warning: variable 'saip' set but not used [-Wunused-but-set-variable]
SAIndex2Ptr saip;
^
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6314:7: warning: statement with no effect [-Wunused-value]
for (i; i<interrupt->segnum; i++)
^
alignmgr2.c: In function 'AlnMgr2ComputeScoreForSeqAlign':
alignmgr2.c:8324:17: warning: variable 'numseqs' set but not used [-Wunused-but-set-variable]
Int4 numseqs;
^
alignmgr2.c:8322:17: warning: variable 'mismatch' set but not used [-Wunused-but-set-variable]
Int4 mismatch;
^
alignmgr2.c:8321:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from alignmgr2.c:232:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
alignmgr2.c:2123:13: warning: 'AlnMgr2SortVerticesByNumEdges' defined but not used [-Wunused-function]
static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
^
alignmgr2.c:2351:18: warning: 'AlnMgr2GetEdgeList' defined but not used [-Wunused-function]
static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
^
alignmgr2.c:3540:13: warning: 'AlnMgr2AddInNewSA' defined but not used [-Wunused-function]
static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
^
alignmgr2.c:1051:13: warning: 'AlnMgr2UnpackSeqAlignChain' defined but not used [-Wunused-function]
static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
^
alignmgr2.c: In function 'AlnMgr2GetLongestSeqLoc':
alignmgr2.c:10114:15: warning: 'slp_longest' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqLocPtr slp_longest;
^
alignmgr2.c: In function 'AlnMgr2IndexLite':
alignmgr2.c:991:33: warning: 'sap_segs_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
^
alignmgr2.c:958:17: note: 'sap_segs_prev' was declared here
SeqAlignPtr sap_segs_prev;
^
alignmgr2.c: In function 'AlnMgr2GetUnalignedInfo':
alignmgr2.c:6095:54: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
^
alignmgr2.c: In function 'AlnMgr2GetMaxUnalignedLength':
alignmgr2.c:7031:22: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
SAIndex2Ptr saip;
^
alignmgr2.c:7060:19: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (i=0; i<dsp->dim; i++)
^
alignmgr2.c: In function 'AlnMgr2GetInterruptInfo':
alignmgr2.c:6336:16: warning: 'iip' may be used uninitialized in this function [-Wmaybe-uninitialized]
iip->strand = strand;
^
alignmgr2.c:6165:19: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
trans = saip->srdp[saip->anchor-1]->sect;
^
alignmgr2.c:6321:32: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
iip->lens[k] += dsp->lens[i];
^
alignmgr2.c: In function 'AlnMgr2GetNthSeqRangeInSA':
alignmgr2.c:6459:16: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (n > saip->numrows || n <= 0)
^
alignmgr2.c:6472:57: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1];
^
alignmgr2.c: In function 'AlnMgr2GetNthRowSpanInSA':
alignmgr2.c:6516:16: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (n > saip->numrows || n <= 0)
^
alignmgr2.c:6541:41: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
^
alignmgr2.c: In function 'AlnMgr2GetAlnLength':
alignmgr2.c:6772:45: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
len += AlnMgr2GetMaxUnalignedLength(salp, i);
^
alignmgr2.c:6759:15: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->anchor == -1)
^
alignmgr2.c:6769:22: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (i=0; i<dsp->numseg; i++)
^
alignmgr2.c: In function 'AlnMgr2GetNextAlnBit':
alignmgr2.c:5757:84: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_sect = binary_search_on_uint4_list(saip->aligncoords, amp->real_from, saip->numseg);
^
alignmgr2.c:5978:19: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
endoffset = dsp->lens[trans[stop_sect]] - (amp->to_aln - saip->aligncoords[stop_sect]) - 1;
^
alignmgr2.c: In function 'AlnMgr2IsSAPDiscAli':
alignmgr2.c:6796:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->numunaln > 0)
^
alignmgr2.c: In function 'AlnMgr2GetNumAlnBlocks':
alignmgr2.c:6819:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->numunaln >= 0)
^
alignmgr2.c: In function 'AlnMgr2GetNthBlockRange':
alignmgr2.c:6853:20: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = saip->aligncoords[saip->unaln[n-1]+1];
^
alignmgr2.c: In function 'AlnMgr2GetNthUnalignedForNthRow':
alignmgr2.c:6909:40: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
i = binary_search_on_uint2_list(saip->srdp[row-1]->unaligned, seg, saip->srdp[row-1]->numunaln);
^
alignmgr2.c:6919:65: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])];
^
alignmgr2.c: In function 'AlnMgr2GetNextLengthBit':
alignmgr2.c:7001:25: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (*seg < saip->numunaln)
^
alignmgr2.c:6937:22: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2GetNumSegsInRange':
alignmgr2.c:7168:62: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
^
alignmgr2.c:6021:13: warning: 'aligncoords' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (list == NULL || listlen == 0)
^
alignmgr2.c:7133:21: note: 'aligncoords' was declared here
Uint4Ptr aligncoords;
^
alignmgr2.c: In function 'AlnMgr2MapBioseqToSeqAlign':
alignmgr2.c:7602:18: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (row > saip->numrows)
^
alignmgr2.c:7573:21: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
DenseSegPtr dsp;
^
alignmgr2.c: In function 'AlnMgr2MapSeqAlignToBioseq':
alignmgr2.c:7700:12: warning: 'saip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (saip->anchor > 0)
^
alignmgr2.c:7713:36: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset);
^
alignmgr2.c: In function 'AlnMgr2GetSubAlign':
alignmgr2.c:8019:7: warning: 'sap_real' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((a = AlnMgr2FindAnchor(sap_real)) > 0)
^
alignmgr2.c: In function 'AlnMgr2FillInUnaligned':
alignmgr2.c:9852:12: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr = curr + 1 + offset;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF alnread.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function 'DoesSeqStringMatchBsp':
acerdapi.c:201:30: warning: variable 'seq_len' set but not used [-Wunused-but-set-variable]
Int4 ctr, pos = 0, i, len, seq_len;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:134:12: warning: 's_IsGapChar' defined but not used [-Wunused-function]
static int s_IsGapChar (char ch, char *gap_chars)
^
aceread.c:247:13: warning: 'AdjustGapInfoFor5Trim' defined but not used [-Wunused-function]
static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
^
aceread.c:276:13: warning: 'AdjustGapInfoFor3Trim' defined but not used [-Wunused-function]
static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
^
aceread.c:3308:12: warning: 's_GetUngappedPosition' defined but not used [-Wunused-function]
static int s_GetUngappedPosition (int gapped_pos, char *seq)
^
aceread.c: In function 's_ReadContig':
aceread.c:1477:12: warning: 'linestring' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (linestring != NULL) free (linestring);
^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cdentrez.c
cdentrez.c:1616:26: warning: 'FreePostingList' defined but not used [-Wunused-function]
static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
^
cdentrez.c:2935:23: warning: 'MedSumAsnRead' defined but not used [-Wunused-function]
static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
^
cdentrez.c:283:23: warning: 'CdEntMlSumGet' declared 'static' but never defined [-Wunused-function]
static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
^
cdentrez.c:307:20: warning: 'BIOSEQ_id_E' defined but not used [-Wunused-variable]
static AsnTypePtr BIOSEQ_id_E = NULL;
^
cdentrez.c:310:23: warning: 'CdEntSeqSumGet' declared 'static' but never defined [-Wunused-function]
static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
^
cdentrez.c: In function 'CdEntrezMergeTerm':
cdentrez.c:2675:17: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized]
*totl = total;
^
cdentrez.c:2672:17: warning: 'special' may be used uninitialized in this function [-Wmaybe-uninitialized]
*spcl = special;
^
cdentrez.c:2640:20: warning: 'termpage' may be used uninitialized in this function [-Wmaybe-uninitialized]
cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
^
cdentrez.c: In function 'CdLinkUidList':
cdentrez.c:938:2: warning: 'count' may be used uninitialized in this function [-Wmaybe-uninitialized]
return count;
^
cdentrez.c: In function 'CdTermListByTerm':
cdentrez.c:1036:10: warning: 'first' may be used uninitialized in this function [-Wmaybe-uninitialized]
rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
^
cdentrez.c: In function 'CdEntTLAddTerm':
cdentrez.c:1895:24: warning: 'total' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (scanOk && total > 0) {
^
cdentrez.c:1787:13: note: 'total' was declared here
Int4 total;
^
cdentrez.c: In function 'CdEntrezFindTerm':
cdentrez.c:1121:14: warning: 'ctp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*spcl = ctp->special_count;
^
cdentrez.c: In function 'CdEntMedlineEntryListGet':
cdentrez.c:2717:9: warning: 'aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
mep = MedlineEntryAsnRead(aip, NULL);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cdromlib.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
cdnewlib.c:601:2: warning: missing braces around initializer [-Wmissing-braces]
"", 0, 0,
^
cdnewlib.c:601:2: warning: (near initialization for '_finfo[0]') [-Wmissing-braces]
cdnewlib.c:615:2: warning: missing braces around initializer [-Wmissing-braces]
SYS_KEYNAME, SYS_DIRNAME, NULL, NULL,
^
cdnewlib.c:615:2: warning: (near initialization for '_dir[0]') [-Wmissing-braces]
cdnewlib.c: In function 'cd3_CdDocAsnOpen':
cdnewlib.c:1327:9: warning: unused variable 'fdir' [-Wunused-variable]
char *fdir = NULL;
^
cdnewlib.c: In function 'CdDevice_Init':
cdnewlib.c:2739:6: warning: variable 'cd_num' set but not used [-Wunused-but-set-variable]
int cd_num;
^
cdnewlib.c: At top level:
cdnewlib.c:3506:12: warning: 'Cache_Delete' defined but not used [-Wunused-function]
static int Cache_Delete (Cache *cache, long id)
^
cdnewlib.c:3569:12: warning: 'Cache_Touch' defined but not used [-Wunused-function]
static int Cache_Touch (Cache *cache, long id)
^
cdnewlib.c:3592:14: warning: 'Cache_Peek' defined but not used [-Wunused-function]
static void* Cache_Peek (Cache *cache, long id)
^
cdnewlib.c:3605:13: warning: 'Cache_Purge' defined but not used [-Wunused-function]
static void Cache_Purge (Cache *cache)
^
cdnewlib.c:582:15: warning: '_empty_string' defined but not used [-Wunused-variable]
static char * _empty_string = "";
^
cdnewlib.c:638:18: warning: '_div' defined but not used [-Wunused-variable]
static DivInfo * _div;
^
cdnewlib.c: In function 'UnixFileGets':
cdnewlib.c:1509:6: warning: 'ch' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ch == '\0') {
^
cdnewlib.c: In function 'trmncmp':
cdnewlib.c:2379:2: warning: 'c2' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (c1 - c2);
^
cdnewlib.c:2379:2: warning: 'c1' may be used uninitialized in this function [-Wmaybe-uninitialized]
cdnewlib.c: In function 'TrmIndex_Lookup':
cdnewlib.c:2136:24: warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized]
int lo, hi, mid, len, d;
^
cdnewlib.c:2168:33: warning: 'term' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (d==0 && len == (int)strlen(term))
^
cdnewlib.c: In function 'UidIndex_Lookup':
cdnewlib.c:1986:20: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
page_num = (uid < *p && mid >0) ? mid-1 : mid;
^
cdnewlib.c:1986:42: warning: 'mid' may be used uninitialized in this function [-Wmaybe-uninitialized]
page_num = (uid < *p && mid >0) ? mid-1 : mid;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF casn.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from ../include/ncbi.h:58:0,
from cdconfig.c:75:
cdconfig.c: In function 'ChangeMedia':
../include/ncbistd.h:278:15: warning: statement with no effect [-Wunused-value]
#define FALSE ((Nlm_Boolean)0)
^
../include/ncbifile.h:169:76: note: in expansion of macro 'FALSE'
#define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd) FALSE
^
cdconfig.c:941:29: note: in expansion of macro 'EjectCd'
EjectCd(toBeEjected->entrez_info->volume_label,
^
../include/ncbistd.h:278:15: warning: statement with no effect [-Wunused-value]
#define FALSE ((Nlm_Boolean)0)
^
../include/ncbifile.h:170:76: note: in expansion of macro 'FALSE'
#define MountCd(sVolume, deviceName, mountPoint, mountCmd) FALSE
^
cdconfig.c:960:17: note: in expansion of macro 'MountCd'
MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
^
cdconfig.c: At top level:
cdconfig.c:191:17: warning: 'UnMarkLRUineligible' declared 'static' but never defined [-Wunused-function]
static void UnMarkLRUineligible PROTO((void));
^
cdconfig.c: In function 'EntrezInfoMerge':
cdconfig.c:1250:44: warning: 'besttype' may be used uninitialized in this function [-Wmaybe-uninitialized]
new->types[i].num_bucket = besttype->num_bucket;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objentr.c
objentr.c: In function 'DocSumAsnRead':
objentr.c:970:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objentr.c:969:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objentr.c: At top level:
objentr.c:771:16: warning: 'EntrezLinkInfo_AsnWrite' defined but not used [-Wunused-function]
static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
^
objentr.c:806:23: warning: 'EntrezDivInfo_Destruct' defined but not used [-Wunused-function]
static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
^
objentr.c: In function 'EntrezInfoAsnRead':
objentr.c:818:5: warning: 'div' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (div == NULL)
^
objentr.c:241:17: note: 'div' was declared here
EntrezDivInfo *div;
^
objentr.c:763:17: warning: 'link' may be used uninitialized in this function [-Wmaybe-uninitialized]
link->datasize = (int) val.intvalue;
^
objentr.c:240:18: note: 'link' was declared here
EntrezLinkInfo *link;
^
objentr.c:704:19: warning: 'fld' may be used uninitialized in this function [-Wmaybe-uninitialized]
fld->post_type = (PostType) val.intvalue;
^
objentr.c:239:19: note: 'fld' was declared here
EntrezFieldInfo *fld;
^
objentr.c:649:18: warning: 'tinf' may be used uninitialized in this function [-Wmaybe-uninitialized]
tinf->asntype = (char*) val.ptrvalue;
^
objentr.c:238:18: note: 'tinf' was declared here
EntrezTypeInfo *tinf;
^
objentr.c:856:14: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
div->docs[i++] = val.intvalue;
^
objentr.c:824:7: note: 'i' was declared here
int i;
^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibbutns.c
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Nlm_Int2 val;
^
vibbutns.c: In function 'Nlm_NewButton.isra.1':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wmaybe-uninitialized]
XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibextra.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibfiles.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibforms.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibgroup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF viblists.c
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
Nlm_Boolean is_realized;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibmenus.c
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
Nlm_MenU m;
^
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
Nlm_Char accel;
^
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
Widget lbl;
^
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
Pixel color;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibsbars.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibslate.c
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNbackground, &color, 0);
^
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibtexts.c
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
^
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibutils.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibwndws.c
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
int screen_num;
^
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
Nlm_Int2 retval;
^
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
main (int argc, char *argv[])
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF drawing.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
Int4 curScale;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF picture.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF viewer.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF document.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF table.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF palette.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF diagnost.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF image.c
image.c: In function 'ShiftXMask':
image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
if(!((mask >> hi + low) & (unsigned long)1)) break;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pictur3d.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prim3d1.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prim3d2.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prim3d3.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prim3d4.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prim3d5.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF viewer3d.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vibmouse.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
Bool waited = False;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF imagelst.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF treeview.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:46: warning: unused variable 'tmp' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:40: warning: unused variable 'pCz' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:34: warning: unused variable 'pCy' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:28: warning: unused variable 'pCx' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:22: warning: unused variable 'pNz' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:16: warning: unused variable 'pNy' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:10: warning: unused variable 'pNx' [-Wunused-variable]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3460:47: warning: unused variable 'Cz' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:42: warning: unused variable 'Cy' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:37: warning: unused variable 'Cx' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:32: warning: unused variable 'Nz' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:27: warning: unused variable 'Ny' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3460:15: warning: unused variable 'Nx' [-Wunused-variable]
GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
^
shim3d.c:3459:21: warning: unused variable 'pi' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3459:15: warning: unused variable 'sinj' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3459:9: warning: unused variable 'cosj' [-Wunused-variable]
cosj, sinj, pi = 3.14159265358979323846;
^
shim3d.c:3458:33: warning: unused variable 'prevlen' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:29: warning: unused variable 'Vz' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:25: warning: unused variable 'Vy' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:21: warning: unused variable 'Vx' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:17: warning: unused variable 'Hz' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:13: warning: unused variable 'Hy' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3458:9: warning: unused variable 'Hx' [-Wunused-variable]
Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
^
shim3d.c:3457:21: warning: unused variable 'dQtz' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3457:15: warning: unused variable 'dQty' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3457:9: warning: unused variable 'dQtx' [-Wunused-variable]
dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
^
shim3d.c:3455:14: warning: unused variable 'len' [-Wunused-variable]
GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
^
shim3d.c:3454:26: warning: unused variable 'offset' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:23: warning: unused variable 'm' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:20: warning: unused variable 'k' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
shim3d.c:3454:17: warning: unused variable 'j' [-Wunused-variable]
Nlm_Int4 i, j, k, m, offset;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
Boolean IsGoUp=FALSE;
^
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
vibbutns.c: In function 'Nlm_CheckCallback':
vibbutns.c:328:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_RadioCallback':
vibbutns.c:347:20: warning: variable 'c' set but not used [-Wunused-but-set-variable]
Nlm_ControlTool c;
^
vibbutns.c: In function 'Nlm_SetButtonStatus':
vibbutns.c:668:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Nlm_Int2 val;
^
vibbutns.c: In function 'Nlm_NewButton.isra.1':
vibbutns.c:1133:17: warning: 'call' may be used uninitialized in this function [-Wmaybe-uninitialized]
XtAddCallback (c, call, Nlm_ButtonCallback, (XtPointer) b);
^
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
viblists.c: In function 'Nlm_SetListPosition':
viblists.c:1118:15: warning: variable 'is_realized' set but not used [-Wunused-but-set-variable]
Nlm_Boolean is_realized;
^
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
vibmenus.c: In function 'Nlm_IsMenuItemChecked':
vibmenus.c:563:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CheckMenuItem':
vibmenus.c:591:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableMenuItem':
vibmenus.c:1986:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:1985:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoice':
vibmenus.c:2052:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceGroup':
vibmenus.c:2102:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_EnableChoiceItem':
vibmenus.c:2146:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2144:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableMenuItem':
vibmenus.c:2309:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2308:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoice':
vibmenus.c:2375:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_DisableChoiceItem':
vibmenus.c:2469:17: warning: variable 'itm' set but not used [-Wunused-but-set-variable]
Nlm_Int2 itm;
^
vibmenus.c:2467:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_RemoveSubMenu':
vibmenus.c:2607:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_CountMenuItems':
vibmenus.c:3036:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetMenuItem':
vibmenus.c:3219:17: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_MenuTool h;
^
vibmenus.c: In function 'Nlm_GetPopListTitle':
vibmenus.c:3329:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
Nlm_MenU m;
^
vibmenus.c: In function 'Nlm_AppendItems':
vibmenus.c:3948:17: warning: unused variable 'accel' [-Wunused-variable]
Nlm_Char accel;
^
vibmenus.c: In function 'Nlm_NewPopupList':
vibmenus.c:4939:19: warning: unused variable 'lbl' [-Wunused-variable]
Widget lbl;
^
vibmenus.c:4937:19: warning: unused variable 'color' [-Wunused-variable]
Pixel color;
^
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
vibslate.c: In function 'Nlm_EnableSlate':
vibslate.c:1199:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_DisableSlate':
vibslate.c:1254:18: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SelectSlate':
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SelectPanel':
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNbackground, &color, 0);
^
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (h, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateClick':
vibslate.c:2026:20: warning: variable 'h' set but not used [-Wunused-but-set-variable]
Nlm_SlateTool h;
^
vibslate.c: In function 'Nlm_SlateClickCallback':
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateInputCallback':
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNbackground, &color, 0);
^
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues(w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_SlateDrawCallback':
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNbackground, &color, 0);
^
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
XtVaGetValues (w, XmNforeground, &color, 0);
^
vibslate.c: In function 'Nlm_Set3DColorMap':
vibslate.c:2686:17: warning: unused variable 'testvisual' [-Wunused-variable]
Boolean testvisual;
^
vibslate.c:2685:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
vibtexts.c: In function 'Nlm_TextCallback':
vibtexts.c:2982:24: warning: unused variable 'cbs' [-Wunused-variable]
XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
^
vibtexts.c: In function 'Nlm_LoseFocusCallback':
vibtexts.c:2999:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
vibtexts.c: In function 'Nlm_TabCallback':
vibtexts.c:3109:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenReturnCallback':
vibtexts.c:3122:15: warning: variable 'event' set but not used [-Wunused-but-set-variable]
XKeyEvent *event;
^
vibtexts.c: In function 'Nlm_HiddenActivateCallback':
vibtexts.c:3135:25: warning: variable 'cbs' set but not used [-Wunused-but-set-variable]
XmAnyCallbackStruct *cbs;
^
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
vibwndws.c: In function 'Nlm_SetColorMap':
vibwndws.c:1060:13: warning: variable 'defaultdepth' set but not used [-Wunused-but-set-variable]
int defaultdepth;
^
vibwndws.c: In function 'Nlm_SetWindowTitle':
vibwndws.c:1567:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_GetWindowTitle':
vibwndws.c:1610:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_NewWindow':
vibwndws.c:2155:19: warning: variable 'screen_num' set but not used [-Wunused-but-set-variable]
int screen_num;
^
vibwndws.c: In function 'Nlm_HideWindow':
vibwndws.c:2526:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowNormal':
vibwndws.c:2969:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowModal':
vibwndws.c:3014:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_ShowDocument':
vibwndws.c:3060:19: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: In function 'Nlm_VibMainPrelude':
vibwndws.c:6771:13: warning: unused variable 'retval' [-Wunused-variable]
Nlm_Int2 retval;
^
vibwndws.c: In function 'Nlm_RemoveDyingWindows':
vibwndws.c:6893:20: warning: variable 'wptr' set but not used [-Wunused-but-set-variable]
Nlm_WindowTool wptr;
^
vibwndws.c: At top level:
vibwndws.c:1318:16: warning: 'Nlm_StandardColormap' defined but not used [-Wunused-function]
static Boolean Nlm_StandardColormap(Colormap *cMap,
^
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
vibmain.c:121:1: warning: return type defaults to 'int' [-Wreturn-type]
main (int argc, char *argv[])
^
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
mapping.c: In function 'Nlm_MapRectToWorldBox':
mapping.c:139:8: warning: variable 'curScale' set but not used [-Wunused-but-set-variable]
Int4 curScale;
^
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
image.c: In function 'ShiftXMask':
image.c:840:26: warning: suggest parentheses around '+' inside '>>' [-Wparentheses]
if(!((mask >> hi + low) & (unsigned long)1)) break;
^
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
netscape.c: In function 'NS_Obtain_lock':
netscape.c:236:10: warning: variable 'waited' set but not used [-Wunused-but-set-variable]
Bool waited = False;
^
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function 'OGL_AddCylinder3D':
shim3d.c:906:14: warning: unused variable 'iCount' [-Wunused-variable]
Nlm_Int4 iCount;
^
shim3d.c: In function 'OGL_AddText3D':
shim3d.c:1198:22: warning: unused variable 'i' [-Wunused-variable]
Nlm_Int4 Length, i;
^
shim3d.c: In function 'OGL_Zoom_DragMA':
shim3d.c:1758:16: warning: unused variable 'OGL_Data' [-Wunused-variable]
TOGL_Data *OGL_Data = MAToOGL(ma);
^
shim3d.c: In function 'OGL_Hit':
shim3d.c:2053:17: warning: left shift count >= width of type [enabled by default]
ZMinName = ZMinName << (sizeof(GLuint) * 8);
^
shim3d.c: In function 'write_row_callback':
shim3d.c:2899:15: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
float start, end;
^
shim3d.c:2899:22: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
float start, end;
^
shim3d.c: In function 'SetOGLFont':
shim3d.c:2369:64: warning: 'closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
^
shim3d.c:2364:37: warning: 'mindiff' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ii == 0 || diff < mindiff) {
^
shim3d.c:2322:28: warning: 'list' may be used uninitialized in this function [-Wmaybe-uninitialized]
char query[256], **list, *pos;
^
shim3d.c: In function 'Nlm_AddHalfWorm3D':
shim3d.c:3461:40: warning: 'pCz' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:34: warning: 'pCy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:28: warning: 'pCx' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:22: warning: 'pNz' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:16: warning: 'pNy' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3461:10: warning: 'pNx' may be used uninitialized in this function [-Wmaybe-uninitialized]
*pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
^
shim3d.c:3703:48: warning: 'Cz' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3703:41: warning: 'Cy' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3703:34: warning: 'Cx' may be used uninitialized in this function [-Wmaybe-uninitialized]
glVertex3d(Cx[k], Cy[k], Cz[k]);
^
shim3d.c:3670:48: warning: 'Nz' may be used uninitialized in this function [-Wmaybe-uninitialized]
glNormal3d(Nx[k], Ny[k], Nz[k]);
^
shim3d.c:3670:41: warning: 'Ny' may be used uninitialized in this function [-Wmaybe-uninitialized]
glNormal3d(Nx[k], Ny[k], Nz[k]);
^
shim3d.c:3454:26: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
Nlm_Int4 i, j, k, m, offset;
^
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
odlbox.c: In function 'LB_onVScroll':
odlbox.c:424:12: warning: variable 'IsGoUp' set but not used [-Wunused-but-set-variable]
Boolean IsGoUp=FALSE;
^
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF accentr.c
accentr.c: In function 'EntrezBiostrucGet':
accentr.c:2113:17: warning: unused variable 'retval' [-Wunused-variable]
BiostrucPtr retval = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF accutils.c
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF drawseq.c
drawseq.c: In function 'AddFlatNodeSymbol':
drawseq.c:811:7: warning: unused variable 'symbol_height' [-Wunused-variable]
Int4 symbol_height = 8;
^
drawseq.c: In function 'AddAlignBlocks':
drawseq.c:970:7: warning: variable 'c_num' set but not used [-Wunused-but-set-variable]
Int2 c_num;
^
drawseq.c: In function 'AddAlignFeature':
drawseq.c:1369:8: warning: unused variable 'ptype' [-Wunused-variable]
Uint1 ptype = 0;
^
drawseq.c: In function 'AddAlignmentMismatch':
drawseq.c:1523:7: warning: variable 'i_right' set but not used [-Wunused-but-set-variable]
Int4 i_right;
^
drawseq.c: In function 'DrawRestrictionMap':
drawseq.c:1811:10: warning: unused variable 'retval' [-Wunused-variable]
Boolean retval = FALSE;
^
drawseq.c:1802:15: warning: variable 'center' set but not used [-Wunused-but-set-variable]
Int4 x1, x2, center;
^
drawseq.c: In function 'DrawFeatures':
drawseq.c:2563:7: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Int2 entityID;
^
drawseq.c: In function 'DrawOneSeqLoc':
drawseq.c:3020:10: warning: variable 'show_seq_label' set but not used [-Wunused-but-set-variable]
Boolean show_seq_label = TRUE; /*show the label of a sequence*/
^
drawseq.c:3009:10: warning: variable 'ends' set but not used [-Wunused-but-set-variable]
Boolean ends;
^
drawseq.c: In function 'Label_GData':
drawseq.c:3439:10: warning: variable 'success' set but not used [-Wunused-but-set-variable]
Boolean success = FALSE;
^
drawseq.c: In function 'DrawEquivAlign':
drawseq.c:3594:8: warning: unused variable 'my_gray_color' [-Wunused-variable]
Uint1 my_gray_color[]={63, 63, 63};
^
drawseq.c: In function 'load_align_label_rectangle':
drawseq.c:4352:10: warning: variable 'found_it' set but not used [-Wunused-but-set-variable]
Boolean found_it;
^
drawseq.c: In function 'PicForAlignNode':
drawseq.c:4558:18: warning: variable 'min_scale' set but not used [-Wunused-but-set-variable]
Int4 max_width, min_scale;
^
drawseq.c: At top level:
drawseq.c:3511:18: warning: 'get_map_pos' defined but not used [-Wunused-function]
static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
^
drawseq.c:3525:22: warning: 'get_ith_arp' defined but not used [-Wunused-function]
static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF fea2seg.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF fstyle.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF smdlg1.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF smdlg2.c
smdlg2.c: In function 'Nlm_CreateDlgGroup':
smdlg2.c:631:12: warning: variable 'toAlign' set but not used [-Wunused-but-set-variable]
Handle toAlign[3];
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF smdlg3.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF smtools.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF styleman.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF stylemui.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF glbpic.c
glbpic.c: In function 'label_linear_mark':
glbpic.c:1295:7: warning: unused variable 'tick_len' [-Wunused-variable]
Int4 tick_len = TICK_LEN;
^
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1552:8: warning: variable 'p_val' set but not used [-Wunused-but-set-variable]
Uint1 p_val;
^
glbpic.c: At top level:
glbpic.c:584:19: warning: 'extract_align_range' defined but not used [-Wunused-function]
static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
^
glbpic.c:1748:16: warning: 'get_print_score' defined but not used [-Wunused-function]
static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
^
glbpic.c: In function 'get_circle_label_align':
glbpic.c:2349:2: warning: 'align' may be used uninitialized in this function [-Wmaybe-uninitialized]
return align;
^
glbpic.c: In function 'label_circle_mark':
glbpic.c:2470:7: warning: 'first_align' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(label_align != first_align)
^
glbpic.c:2441:6: warning: 'p_align' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(label_align != p_align)
^
glbpic.c:2483:26: warning: 'first_left' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(ABS(first_left - left) < (t_width +3))
^
glbpic.c:2469:28: warning: 'first_width' may be used uninitialized in this function [-Wmaybe-uninitialized]
t_width = (first_width + width)/2;
^
glbpic.c:2473:24: warning: 'first_top' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(ABS(first_top - top )< (font_height+3))
^
glbpic.c: In function 'add_alignment_to_global':
glbpic.c:1739:16: warning: 'g_top' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddTextLabel(seg, (left+right)/2, g_top, annotDB, font, 0, MIDDLE_CENTER, 0);
^
glbpic.c: In function 'Draw_Global':
glbpic.c:2177:12: warning: 'seglen' may be used uninitialized in this function [-Wmaybe-uninitialized]
m_stop += seglen;
^
glbpic.c:1943:8: note: 'seglen' was declared here
Int4 seglen;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF layout.c
layout.c: In function 'LayoutNodeFlat':
layout.c:326:24: warning: variable 'prev' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, next, prev;
^
layout.c: In function 'layout_uncompressed_group':
layout.c:1244:20: warning: variable 'group_stop' set but not used [-Wunused-but-set-variable]
Int2 group_start, group_stop;
^
layout.c: In function 'LayoutFeatNode':
layout.c:1365:17: warning: variable 'y_next' set but not used [-Wunused-but-set-variable]
Int4 cur_line, y_next;
^
layout.c:1364:17: warning: variable 'labelstyle' set but not used [-Wunused-but-set-variable]
Int4 segstyle, labelstyle;
^
layout.c:1363:10: warning: variable 'show_trunc' set but not used [-Wunused-but-set-variable]
Boolean show_trunc = FALSE;
^
layout.c:1350:10: warning: variable 'k' set but not used [-Wunused-but-set-variable]
Int2 i, k;
^
layout.c: In function 'LayoutAlignNode':
layout.c:2208:7: warning: unused variable 'num' [-Wunused-variable]
Int4 num = 0;
^
layout.c: At top level:
layout.c:1779:16: warning: 'modify_master_line' defined but not used [-Wunused-function]
static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
^
layout.c: In function 'layout_uncompressed_group':
layout.c:1321:14: warning: 'c_fnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_feattype = c_fnp->feattype;
^
layout.c: In function 'GroupFeatNode':
layout.c:636:14: warning: 'prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
prev->next = new;
^
layout.c:594:35: note: 'prev' was declared here
ValNodePtr my_node = NULL, curr, prev, next;
^
layout.c: In function 'OrderCdsmRNA':
layout.c:969:14: warning: 'm_missed' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if(missed == m_missed && m_offset > offset)
^
layout.c:940:15: note: 'm_missed' was declared here
Int2 missed, m_missed; /*number of exons missed at both end*/
^
layout.c: In function 'LayoutFeatNode':
layout.c:1503:12: warning: 'p_right' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_right = MAX(right, p_right);
^
layout.c:1502:11: warning: 'p_left' may be used uninitialized in this function [-Wmaybe-uninitialized]
p_left = MIN(left, p_left);
^
layout.c:1461:15: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized]
fnp->bottom = height;
^
layout.c: In function 'LayoutAlignNode':
layout.c:2215:17: warning: 'next_line' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 cur_line, next_line;
^
layout.c:2248:7: warning: 'next' may be used uninitialized in this function [-Wmaybe-uninitialized]
while(vnp)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF saldist.c
saldist.c: In function 'copy_string':
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
*from++;
^
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
*from++;
^
saldist.c: In function 'nss_ref_complength':
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1455:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1455:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'nss_pw_complength':
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1547:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1547:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'nss_gp_complength':
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
^
saldist.c:1640:16: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c:1640:12: warning: variable 'c1' set but not used [-Wunused-but-set-variable]
c1, c2;
^
saldist.c: In function 'SortbySimProc':
saldist.c:2139:31: warning: variable 'newsalpd' set but not used [-Wunused-but-set-variable]
SeqAlignPtr newsalp, newsalpd;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
saldist.c:910:14: warning: 'matrixlst' defined but not used [-Wunused-variable]
static Char *matrixlst [] = {"", "idmat",
^
saldist.c:928:16: warning: 'new_matrice' defined but not used [-Wunused-function]
static Boolean new_matrice (Int2 simmatrix, CharPtr path)
^
saldist.c:999:13: warning: 'AAcode' defined but not used [-Wunused-function]
static Int2 AAcode(Char car)
^
saldist.c:1080:24: warning: 'FloatLomatrix' defined but not used [-Wunused-function]
static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
^
saldist.c:1853:22: warning: 'scangp_calcul' defined but not used [-Wunused-function]
static Int4Ptr PNTR scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
^
saldist.c: In function 'writematrixhalf.constprop.9':
saldist.c:1225:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp=vnp->next;
^
saldist.c: In function 'PwDistProc':
saldist.c:1151:18: warning: 'vnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
vnp=vnp->next;
^
saldist.c:1104:19: note: 'vnp' was declared here
ValNodePtr vnp,
^
saldist.c: In function 'SortbyLenItem':
saldist.c:2191:14: warning: 'mink' may be used uninitialized in this function [-Wmaybe-uninitialized]
sortlst [mink] = j + 1;
^
saldist.c:2172:28: note: 'mink' was declared here
Int2 j, k, mink;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF saled.c
saled.c: In function 'ReadAlignmentForSeqEntry':
saled.c:3325:21: warning: unused variable 'dirty' [-Wunused-variable]
dirty = FALSE;
^
saled.c:3321:21: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp=NULL,
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from saled.c:49:
saled.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from saled.c:55:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salfiles.c
salfiles.c: In function 'NewFastaRead':
salfiles.c:315:30: warning: variable 'lastsegsip' set but not used [-Wunused-but-set-variable]
SeqIdPtr segsip=NULL, lastsegsip=NULL;
^
salfiles.c: In function 'ReadAlignmentToStrings':
salfiles.c:664:16: warning: unused variable 'nseq' [-Wunused-variable]
Int2 nseq = 0;
^
salfiles.c: In function 'MacawRead':
salfiles.c:1257:15: warning: unused variable 'vnp' [-Wunused-variable]
vnp = NULL;
^
salfiles.c: In function 'ReadLocalAlign':
salfiles.c:1370:14: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable]
tmp1;
^
salfiles.c: In function 'ImportFromFile':
salfiles.c:2072:20: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep = NULL;
^
salfiles.c:2071:20: warning: unused variable 'sap' [-Wunused-variable]
SeqAnnotPtr sap = NULL;
^
salfiles.c: In function 'sesp_to_pept':
salfiles.c:2713:18: warning: unused variable 'bufferPtr' [-Wunused-variable]
bufferPtr = NULL;
^
salfiles.c: In function 'SaveFeatProc':
salfiles.c:3387:22: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salfiles.c: In function 'CCReadAnythingLoop':
salfiles.c:3685:16: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
salfiles.c:501:19: warning: 'get_lens_fromseqalign' defined but not used [-Wunused-function]
static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
^
In file included from ../include/sequtil.h:43:0,
from ../include/gather.h:166,
from ../include/saledit.h:52,
from ../include/salfiles.h:48,
from salfiles.c:44:
salfiles.c: In function 'CCDownloadProc':
../include/objsset.h:230:26: warning: 'new_sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define IS_Bioseq(a) ((a)->choice == 1)
^
salfiles.c:2286:15: note: 'new_sep' was declared here
SeqEntryPtr new_sep;
^
salfiles.c: In function 'NewFastaRead.constprop.16':
salfiles.c:460:6: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (sip!=NULL)
^
salfiles.c: In function 'GapFastaRead':
salfiles.c:747:25: warning: 'seqstr' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqstr [lgseq] = strp[j];
^
salfiles.c:654:16: note: 'seqstr' was declared here
seqstr;
^
salfiles.c:724:15: warning: 'startp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!startp) {
^
salfiles.c:660:16: note: 'startp' was declared here
Boolean startp;
^
salfiles.c: In function 'ReadLocalAlignment':
salfiles.c:1284:10: warning: 'seqvnp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap = LocalAlignToSeqAnnotDimn (seqvnp, seqid, NULL, n_seq, 0, NULL, FALSE);
^
salfiles.c:1113:19: note: 'seqvnp' was declared here
ValNodePtr vnp, seqvnp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salpanel.c
salpanel.c: In function 'go_to_next_to_draw':
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
offsettmp;
^
salpanel.c: In function 'next_to_draw':
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if ( curstr != NULL )
^
salpanel.c: In function 'AssociatePropagatedSubloc':
salpanel.c:3131:16: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
salpanel.c: In function 'FeaturePropagateForm':
salpanel.c:4670:15: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
PrompT ppt;
^
salpanel.c:4665:15: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
salpanel.c: In function 'OkToContinueWithFeatureApply':
salpanel.c:6099:14: warning: unused variable 'num_missing' [-Wunused-variable]
Int4 num_missing = 0, seq_num, start_num;
^
salpanel.c: In function 'DoApplyFeatureToAlignment':
salpanel.c:6215:31: warning: unused variable 'found_null' [-Wunused-variable]
Boolean found_null = FALSE;
^
salpanel.c: In function 'ApplyFeatureToAlignment':
salpanel.c:6417:31: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salpanel.c:52:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salpanel.c:65:14: warning: 'diamondSym' defined but not used [-Wunused-variable]
static Uint1 diamondSym [] = {
^
salpanel.c:68:14: warning: 'ovalSym' defined but not used [-Wunused-variable]
static Uint1 ovalSym [] = {
^
salpanel.c:77:14: warning: 'upTriSym' defined but not used [-Wunused-variable]
static Uint1 upTriSym [] = {
^
salpanel.c:80:14: warning: 'downTriSym' defined but not used [-Wunused-variable]
static Uint1 downTriSym [] = {
^
salpanel.c:86:14: warning: 'diamondFillSym' defined but not used [-Wunused-variable]
static Uint1 diamondFillSym [] = {
^
salpanel.c:89:14: warning: 'ovalFillSym' defined but not used [-Wunused-variable]
static Uint1 ovalFillSym [] = {
^
salpanel.c:98:14: warning: 'upTriFillSym' defined but not used [-Wunused-variable]
static Uint1 upTriFillSym [] = {
^
salpanel.c:101:14: warning: 'downTriFillSym' defined but not used [-Wunused-variable]
static Uint1 downTriFillSym [] = {
^
salpanel.c:104:14: warning: 'rightOvalSym' defined but not used [-Wunused-variable]
static Uint1 rightOvalSym [] = {
^
salpanel.c:107:14: warning: 'leftOvalSym' defined but not used [-Wunused-variable]
static Uint1 leftOvalSym [] = {
^
salpanel.c:110:14: warning: 'rightOvalFillSym' defined but not used [-Wunused-variable]
static Uint1 rightOvalFillSym [] = {
^
salpanel.c:113:14: warning: 'leftOvalFillSym' defined but not used [-Wunused-variable]
static Uint1 leftOvalFillSym [] = {
^
salpanel.c:224:13: warning: 'get_client_rectxy' defined but not used [-Wunused-function]
static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
^
salpanel.c:5055:13: warning: 'BatchApplyFeatureDetailsMessage' defined but not used [-Wunused-function]
static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
^
salpanel.c: In function 'draw_feat.isra.14':
salpanel.c:1939:17: warning: 'col1' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 col1;
^
salpanel.c: In function 'on_draw':
salpanel.c:2527:32: warning: 'draw_diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salparam.c
salparam.c: In function 'mergelst':
salparam.c:1325:20: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Boolean val;
^
salparam.c: In function 'unmergelst':
salparam.c:1340:20: warning: variable 'dbdp' set but not used [-Wunused-but-set-variable]
DialogBoxDataPtr dbdp;
^
salparam.c: In function 'FormulaDialog':
salparam.c:1398:36: warning: variable 'b5' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3, b4, b5;
^
salparam.c: In function 'JK_NTPattern2Ex':
salparam.c:1596:19: warning: variable 'debug_str' set but not used [-Wunused-but-set-variable]
CharPtr debug_str;
^
salparam.c: In function 'DotPlotBtn':
salparam.c:1936:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
salparam.c: In function 'DotPlotDialog':
salparam.c:1973:20: warning: variable 'bt1' set but not used [-Wunused-but-set-variable]
ButtoN bt1, bt2;
^
salparam.c: In function 'DotPlotItem':
salparam.c:2004:22: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
salparam.c: In function 'SelectSeqFunc':
salparam.c:2308:20: warning: variable 'str' set but not used [-Wunused-but-set-variable]
CharPtr str;
^
salparam.c: In function 'HighlightSelectionFunc':
salparam.c:2344:22: warning: variable 'wdp' set but not used [-Wunused-but-set-variable]
SeqEditViewFormPtr wdp;
^
salparam.c: In function 'PropagateFeatureProc':
salparam.c:2623:25: warning: variable 'iID' set but not used [-Wunused-but-set-variable]
Uint2 eID, iID,
^
salparam.c:2614:20: warning: variable 'salp' set but not used [-Wunused-but-set-variable]
SeqAlignPtr salp;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from salparam.c:58:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sequtil.h:43:0,
from ../include/gather.h:166,
from ../include/salsa.h:52,
from ../include/salparam.h:48,
from salparam.c:44:
salparam.c: In function 'DotPlotBtn':
../include/objsset.h:230:26: warning: 'sep' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define IS_Bioseq(a) ((a)->choice == 1)
^
salparam.c:1931:22: note: 'sep' was declared here
SeqEntryPtr sep;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salsa.c
salsa.c: In function 'SelectSubsProc':
salsa.c:2140:23: warning: variable 'svpp' set but not used [-Wunused-but-set-variable]
SeqEditViewProcsPtr svpp=NULL;
^
salsa.c: In function 'SetSeqInfo':
salsa.c:3195:17: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp = NULL;
^
salsa.c: In function 'SetupAlignDataSap':
salsa.c:3410:16: warning: variable 'entityID_sap' set but not used [-Wunused-but-set-variable]
Uint2 entityID_sap;
^
salsa.c: In function 'get_bestpos_formerge':
salsa.c:4304:17: warning: variable 'insert_after' set but not used [-Wunused-but-set-variable]
insert_after=FALSE;
^
salsa.c:4303:17: warning: variable 'insert_before' set but not used [-Wunused-but-set-variable]
Boolean insert_before=FALSE,
^
salsa.c: In function 'CreateSeqAlignViewForm':
salsa.c:4689:22: warning: variable 'mergebtn' set but not used [-Wunused-but-set-variable]
ButtoN mergebtn;
^
salsa.c: In function 'AlgEditFunc':
salsa.c:4988:23: warning: unused variable 'wdp' [-Wunused-variable]
SeqEditViewFormPtr wdp = NULL;
^
salsa.c:4986:23: warning: unused variable 'w' [-Wunused-variable]
WindoW w = NULL;
^
salsa.c: In function 'OldAlignmentEditor':
salsa.c:5118:16: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Int2 rval;
^
salsa.c: In function 'LaunchAnnotAlignEditor':
salsa.c:5305:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignEditor':
salsa.c:5322:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignViewer':
salsa.c:5339:20: warning: variable 'handled' set but not used [-Wunused-but-set-variable]
Int2 handled;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop':
salsa.c:5354:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop2':
salsa.c:5371:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop3':
salsa.c:5390:20: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
salsa.c: In function 'LaunchAlignEditorFromDesktop4':
salsa.c:5417:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
salsa.c: In function 'InsertSeqProc':
salsa.c:5587:17: warning: variable 'cnclbt' set but not used [-Wunused-but-set-variable]
ButtoN insbt, cnclbt;
^
salsa.c:5585:10: warning: variable 'insprt' set but not used [-Wunused-but-set-variable]
PrompT insprt;
^
salsa.c: In function 'SeqAlignBestHit':
salsa.c:5654:22: warning: variable 'last' set but not used [-Wunused-but-set-variable]
Int4 last;
^
salsa.c: In function 'SeqAlignStartUpdate':
salsa.c:5839:22: warning: variable 'k' set but not used [-Wunused-but-set-variable]
Int2 index, k, j;
^
salsa.c:5838:15: warning: variable 'start' set but not used [-Wunused-but-set-variable]
start;
^
salsa.c:5837:15: warning: variable 'len_sum' set but not used [-Wunused-but-set-variable]
Int4 len_sum,
^
salsa.c:5834:15: warning: variable 'lenp' set but not used [-Wunused-but-set-variable]
Int4Ptr lenp,
^
salsa.c:5833:15: warning: variable 'pre' set but not used [-Wunused-but-set-variable]
SeqIdPtr pre, sip, next;
^
salsa.c: In function 'CCNormalizeSeqAlignId':
salsa.c:6788:23: warning: unused variable 'gi' [-Wunused-variable]
Int4 gi = 0;
^
salsa.c:6787:17: warning: unused variable 'missing_fmt' [-Wunused-variable]
CharPtr missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
^
salsa.c:6786:17: warning: unused variable 'missing_cont_fmt' [-Wunused-variable]
CharPtr missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
^
salsa.c: In function 'ValidateSeqAlignandACCEx':
salsa.c:7145:16: warning: variable 'ans' set but not used [-Wunused-but-set-variable]
MsgAnswer ans;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/salpanel.h:53,
from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from salsa.c:52:0:
../include/salprop.h:50:16: warning: 'GBFeat' defined but not used [-Wunused-variable]
static CharPtr GBFeat[number_GBFeat] = {
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salsa.c:68:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salsa.c:87:13: warning: 'InsertSequenceDlg' declared 'static' but never defined [-Wunused-function]
static void InsertSequenceDlg (ButtoN b);
^
salsa.c:1760:13: warning: 'AcceptCloseWindowButton' defined but not used [-Wunused-function]
static void AcceptCloseWindowButton (ButtoN b)
^
salsa.c:2356:13: warning: 'MakeCdRgnProc' defined but not used [-Wunused-function]
static void MakeCdRgnProc (IteM i) {
^
salsa.c:2360:13: warning: 'MakeCdRgnrProc' defined but not used [-Wunused-function]
static void MakeCdRgnrProc (IteM i) {
^
salsa.c:4884:16: warning: 'DeltaLitOnly' defined but not used [-Wunused-function]
static Boolean DeltaLitOnly (BioseqPtr bsp)
^
salsa.c:6021:13: warning: 'SWPrintFarpointerAln' defined but not used [-Wunused-function]
static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
^
salsa.c: In function 'ExportFASTAForUnselectedUpdates':
salsa.c:6417:13: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
FileClose (fp);
^
salsa.c: In function 'ExportBadAlignments':
salsa.c:6390:13: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
FileClose (fp);
^
salsa.c: In function 'SeqAlignBestHit.isra.12':
salsa.c:5795:23: warning: 'nctr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*nonly = nctr+beg+end;
^
salsa.c:5797:24: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
*nonly = -(beg+end);
^
salsa.c:5797:24: warning: 'beg' may be used uninitialized in this function [-Wmaybe-uninitialized]
salsa.c: In function 'BioseqEditMsgFunc':
salsa.c:912:51: warning: 'anp' may be used uninitialized in this function [-Wmaybe-uninitialized]
ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
^
salsa.c:890:20: note: 'anp' was declared here
AlignNodePtr anp;
^
salsa.c: In function 'DeleteProc':
salsa.c:1945:14: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
newsalp = (SeqAlignPtr)sap->data;
^
salsa.c: In function 'SkipThisWindowProc':
salsa.c:4591:23: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
LaunchAlignViewer(salp);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqfltr.c
seqfltr.c: In function 'FilterSeq':
seqfltr.c:259:21: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
sgp->values = (Pointer) fptr;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqgraph.c
seqgraph.c: In function 'EndPointDialogToEndPointValNode':
seqgraph.c:140:3: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (Pointer) eplist;
^
seqgraph.c: In function 'SeqLocGraphViewProc':
seqgraph.c:1138:41: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
StrCpy (buff, (CharPtr) eplist->data.ptrvalue);
^
seqgraph.c: In function 'CutOffProc':
seqgraph.c:911:11: warning: 'fval' may be used uninitialized in this function [-Wmaybe-uninitialized]
val = fval/2;
^
seqgraph.c:841:14: note: 'fval' was declared here
FloatHi fval;
^
seqgraph.c:1020:41: warning: 'eplist' may be used uninitialized in this function [-Wmaybe-uninitialized]
StrCpy (buff, (CharPtr) eplist->data.ptrvalue);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
seqgrphx.c:28:25: warning: 'MatrixMsgFunc' defined but not used [-Wunused-function]
static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
^
seqgrphx.c: In function 'FilterMsgFunc':
seqgrphx.c:224:12: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (s == NULL)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqpcc.c
seqpcc.c: In function 'PCCProc':
seqpcc.c:229:6: warning: 'pbsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqanal.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF aacomp.c
aacomp.c:86:20: warning: 'AACGraph' defined but not used [-Wunused-function]
static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqscrl.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF valdlg.c
valdlg.c: In function 'ClickRulesDoc':
valdlg.c:373:22: warning: unused variable 'scroll_pos' [-Wunused-variable]
Int2 scroll_pos = 0;
^
valdlg.c:372:22: warning: unused variable 'sb_vert' [-Wunused-variable]
BaR sb_vert = NULL;
^
valdlg.c: In function 'UpdateRuleList':
valdlg.c:479:26: warning: unused variable 'last_cr' [-Wunused-variable]
CommentRulePtr new_cr, last_cr = NULL;
^
valdlg.c: In function 'SaveRuleChanges':
valdlg.c:540:23: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
CommentSetDlgPtr dlg;
^
valdlg.c: In function 'LaunchCommentRulesEditor':
valdlg.c:553:23: warning: unused variable 'm' [-Wunused-variable]
MenU m;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vsm.c
vsm.c: In function 'VSMAboutProc':
vsm.c:1492:8: warning: variable 'p' set but not used [-Wunused-but-set-variable]
PaneL p;
^
vsm.c: In function 'VSeqMgrCreateMainWindow':
vsm.c:1601:12: warning: variable 'omp' set but not used [-Wunused-but-set-variable]
ObjMgrPtr omp;
^
vsm.c: In function 'VSeqMgrPopulateMain':
vsm.c:1742:13: warning: variable 'atp' set but not used [-Wunused-but-set-variable]
AsnTypePtr atp;
^
vsm.c: In function 'VSMGatherPictProc':
vsm.c:2225:15: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
BioseqSetPtr bssp;
^
vsm.c:2220:30: warning: variable 'bottom' set but not used [-Wunused-but-set-variable]
Int4 top, lineheight, left, bottom, width, maxwidth;
^
vsm.c: In function 'VSMAddPictureToEntity':
vsm.c:2853:10: warning: variable 'ptr' set but not used [-Wunused-but-set-variable]
Pointer ptr;
^
vsm.c:2852:13: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vsmfile.c
vsmfile.c: In function 'VSMGenericBinAsnOpen':
vsmfile.c:259:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
vsmfile.c: In function 'VSMGenericFastaSave':
vsmfile.c:395:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
Uint1 code;
^
vsmfile.c: In function 'VSMFastaProtSaveWithProduct':
vsmfile.c:527:11: warning: variable 'code' set but not used [-Wunused-but-set-variable]
Uint1 code;
^
vsmfile.c: In function 'VSMSaveSetsAsFiles':
vsmfile.c:1365:20: warning: variable 'ompcp' set but not used [-Wunused-but-set-variable]
OMProcControlPtr ompcp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vsmutil.c
vsmutil.c: In function 'GetDocPosForError':
vsmutil.c:1657:18: warning: variable 'val' set but not used [-Wunused-but-set-variable]
Int2 val;
^
vsmutil.c: At top level:
vsmutil.c:387:20: warning: 'GetSeqDescGivenIDs' defined but not used [-Wunused-function]
static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
^
vsmutil.c:1542:16: warning: 'MakeFieldReports' defined but not used [-Wunused-function]
static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
^
vsmutil.c: In function 'MakeValidatorReport':
vsmutil.c:879:17: warning: 'ch_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*feat_end = ch_2;
^
vsmutil.c:838:17: note: 'ch_2' was declared here
Char ch, ch_2;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF udvgraph.c
udvgraph.c: In function 'UDV_click_item':
udvgraph.c:877:9: warning: unused variable 'IsTransNeeded' [-Wunused-variable]
Boolean IsTransNeeded=FALSE;
^
udvgraph.c: In function 'UDV_SendBSPSelectMsg':
udvgraph.c:1230:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
udvgraph.c:1226:30: warning: variable 'bsp_coord_old' set but not used [-Wunused-but-set-variable]
Int4 first_bsp_coord, bsp_coord_old,old_pos;
^
udvgraph.c: In function 'UDV_draw_helixDNA':
udvgraph.c:1827:15: warning: variable 'cyChar_2' set but not used [-Wunused-but-set-variable]
Int2 cxChar_2,cyChar_2;
^
udvgraph.c: In function 'draw_logo':
udvgraph.c:1940:38: warning: variable 'cyGlobal' set but not used [-Wunused-but-set-variable]
Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
^
udvgraph.c: In function 'UDV_draw_CDS_minus':
udvgraph.c:2337:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
udvgraph.c:2332:5: warning: variable 'numivals2' set but not used [-Wunused-but-set-variable]
numivals2=0,
^
udvgraph.c: In function 'UDV_draw_CDS_plus':
udvgraph.c:2461:9: warning: variable 'bGiForProductOk' set but not used [-Wunused-but-set-variable]
Boolean bGiForProductOk=FALSE;
^
udvgraph.c: In function 'UDV_draw_panel':
udvgraph.c:4041:21: warning: unused variable 'vnp_seqinfo' [-Wunused-variable]
ValNodePtr vnp_seqinfo=NULL;
^
udvgraph.c:4035:45: warning: variable 'nLinesDraw' set but not used [-Wunused-but-set-variable]
Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw;
^
udvgraph.c:4035:37: warning: variable 'nTotRow' set but not used [-Wunused-but-set-variable]
Int4 decal_haut,from_row,to_row,nTotRow,nLinesDraw;
^
In file included from ../include/asn2ff6.h:142:0,
from udvgraph.c:180:
udvgraph.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
udvgraph.c:948:13: warning: 'UDV_draw_vert_cursor' defined but not used [-Wunused-function]
static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
^
udvgraph.c:971:14: warning: 'UDV_draw_horz_cursor' defined but not used [-Wunused-function]
static void UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
^
udvgraph.c:1298:13: warning: 'UDV_AutoSelectAllSeq' defined but not used [-Wunused-function]
static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
^
udvgraph.c:3433:14: warning: 'UDV_Draw_features_label' defined but not used [-Wunused-function]
static void UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
^
udvgraph.c:3921:14: warning: 'UDV_calc_decalRC' defined but not used [-Wunused-function]
static Int4 UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
^
udvgraph.c: In function 'UDV_GetCurrentDispRange':
udvgraph.c:638:15: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
*from_bsp=pgp->StartLetter;
^
udvgraph.c: In function 'UDV_Draw_features':
udvgraph.c:3203:23: warning: 'idx6' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
^
udvgraph.c:3203:23: warning: 'idx5' may be used uninitialized in this function [-Wmaybe-uninitialized]
udvgraph.c:3196:47: warning: 'idx4' may be used uninitialized in this function [-Wmaybe-uninitialized]
stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
^
udvgraph.c:3189:23: warning: 'idx3' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
^
udvgraph.c:3189:23: warning: 'idx2' may be used uninitialized in this function [-Wmaybe-uninitialized]
udvgraph.c:3182:49: warning: 'idx1' may be used uninitialized in this function [-Wmaybe-uninitialized]
start2=_max_(pgp->StartLetter,context->ivals[idx1]);
^
In file included from ../include/udviewer.h:225:0,
from udvgraph.c:177:
../include/udvdef.h:187:40: warning: 'stop_x2' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define _max_(a,b) ((a)>=(b)?(a):(b))
^
udvgraph.c:2803:21: note: 'stop_x2' was declared here
Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/
^
In file included from ../include/udviewer.h:225:0,
from udvgraph.c:177:
../include/udvdef.h:187:40: warning: 'stop_x' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define _max_(a,b) ((a)>=(b)?(a):(b))
^
udvgraph.c:2803:14: note: 'stop_x' was declared here
Int2 start_x,stop_x,stop_x2, /*id. but in pixels*/
^
udvgraph.c:3226:10: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
MoveTo(_max_(stop_x2,stop_x)+GrData->udv_font.cxChar,y);
^
udvgraph.c: In function 'UDV_ClickProc':
udvgraph.c:1458:21: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (vmp && vmp->hFeatDlg){/*update Features List Dlg if needed;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF udvopen.c
udvopen.c: In function 'UDV_FileOpen':
udvopen.c:875:16: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b,b1,b2;
^
udvopen.c:875:11: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b,b1,b2;
^
udvopen.c: In function 'UDV_CreateListBioseqDlg':
udvopen.c:1180:9: warning: the address of 'szName' will always evaluate as 'true' [-Waddress]
if (szName){
^
udvopen.c: In function 'UDV_FOpenCancelProc':
udvopen.c:792:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_set_PullMenus(&vmp->MainMenu,TRUE);
^
udvopen.c: In function 'UDV_analyze_SEP_for_open':
udvopen.c:325:15: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
vmp->entityID=entityID;
^
udvopen.c:327:14: warning: 'dataptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
vmp->dataptr=dataptr;
^
udvopen.c: In function 'UDV_FOpenAcceptProc':
udvopen.c:855:23: warning: 'vmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
UDV_set_PullMenus(&vmp->MainMenu,TRUE);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF udvpanel.c
udvpanel.c: In function 'UDV_GotoBtnProc':
udvpanel.c:2080:22: warning: variable 'old_ivalue' set but not used [-Wunused-but-set-variable]
Int4 iValue,old_ivalue,line_num,from_bsp,to_bsp,
^
udvpanel.c:2079:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
udvpanel.c: In function 'CreateMainControls':
udvpanel.c:2165:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
Int2 cxChar,cyChar,Margins;
^
udvpanel.c: In function 'UDV_SearchFeatForKey':
udvpanel.c:3478:14: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1,b2;
^
udvpanel.c: At top level:
udvpanel.c:2773:28: warning: 'FeaturesListBoxScan' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
^
udvpanel.c: In function 'InitFeaturesListDlg':
udvpanel.c:3301:16: warning: 'pop' may be used uninitialized in this function [-Wmaybe-uninitialized]
PopupItem(pop,szSeqFeatClassName[k]);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
dotvibrant.c: In function 'DOT_DisplayHits':
dotvibrant.c:564:18: warning: variable 'ycomp' set but not used [-Wunused-but-set-variable]
Int4 ycomp, xcomp;
^
dotvibrant.c: In function 'DOT_VscrlProc':
dotvibrant.c:918:16: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
Int2 visLines, vmargin, hmargin;
^
dotvibrant.c: In function 'DOT_HscrlProc':
dotvibrant.c:972:20: warning: variable 'visLines' set but not used [-Wunused-but-set-variable]
Int2 dx, visLines, offset, hmargin, vmargin;
^
dotvibrant.c: In function 'DOT_VCrossHairs':
dotvibrant.c:1402:10: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size =15;
^
dotvibrant.c: In function 'DOT_HCrossHairs':
dotvibrant.c:1427:9: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size = 15;
^
dotvibrant.c: In function 'DOT_MoveCrossHairs':
dotvibrant.c:1453:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c:1452:10: warning: unused variable 'cursor_size' [-Wunused-variable]
Int4 cursor_size = 15;
^
dotvibrant.c: In function 'DOT_DrawXAxis':
dotvibrant.c:1532:38: warning: unused variable 'title' [-Wunused-variable]
Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/
^
dotvibrant.c: In function 'DOT_DrawYAxis':
dotvibrant.c:1642:38: warning: unused variable 'title' [-Wunused-variable]
Char scale_buf[15] = {""}, title[50]={""}; /*scale value*/
^
dotvibrant.c:1641:55: warning: variable 'Fh_4' set but not used [-Wunused-but-set-variable]
Int4 pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
^
dotvibrant.c: In function 'DOT_SVDisplayDiags':
dotvibrant.c:1770:28: warning: variable 'aln_diag' set but not used [-Wunused-but-set-variable]
Int4 diag, aln_diag;
^
dotvibrant.c:1770:22: warning: variable 'diag' set but not used [-Wunused-but-set-variable]
Int4 diag, aln_diag;
^
dotvibrant.c:1766:22: warning: variable 'width' set but not used [-Wunused-but-set-variable]
Int4 width, height;
^
dotvibrant.c:1765:31: warning: variable 'p_HFrom' set but not used [-Wunused-but-set-variable]
Int4 p_VFrom, p_HFrom;
^
dotvibrant.c:1765:22: warning: variable 'p_VFrom' set but not used [-Wunused-but-set-variable]
Int4 p_VFrom, p_HFrom;
^
dotvibrant.c:1762:28: warning: unused variable 'cutoff' [-Wunused-variable]
Int4 stop, cutoff=0, q_start, s_start, length;
^
dotvibrant.c:1760:34: warning: variable 'seg3' set but not used [-Wunused-but-set-variable]
SegmenT seg1, seg2, seg3, seg4;
^
dotvibrant.c: In function 'DOT_FillNewSeqBufs':
dotvibrant.c:2197:19: warning: unused variable 'alp' [-Wunused-variable]
DOTAlignInfoPtr alp=NULL;
^
dotvibrant.c: In function 'DOT_InitCInfo':
dotvibrant.c:2258:14: warning: unused variable 'colBuf' [-Wunused-variable]
Char colBuf[12]={""};
^
dotvibrant.c: In function 'DOT_SVDisplaySequence':
dotvibrant.c:2379:16: warning: variable 'matrix' set but not used [-Wunused-but-set-variable]
Int4Ptr PNTR matrix;
^
dotvibrant.c:2367:14: warning: variable 'vis_2' set but not used [-Wunused-but-set-variable]
Int4 vis_2, buf_len;
^
dotvibrant.c:2364:14: warning: unused variable 'prot_threshold' [-Wunused-variable]
Int4 prot_threshold=0, bloc_cntr;
^
dotvibrant.c:2350:24: warning: variable 'mip2' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip1, mip2;
^
dotvibrant.c: In function 'DOT_SVClickProc':
dotvibrant.c:2807:17: warning: unused variable 'handled' [-Wunused-variable]
Int2 handled=0;
^
dotvibrant.c: In function 'DOT_ResizeFeatWindow':
dotvibrant.c:3016:63: warning: variable 'SubjectHeight' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c:3016:51: warning: variable 'QueryHeight' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c:3016:37: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int2 height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
^
dotvibrant.c: In function 'DOT_ResizeSequenceWindow':
dotvibrant.c:3098:25: warning: variable 'is_visible2' set but not used [-Wunused-but-set-variable]
Boolean is_visible1, is_visible2;
^
dotvibrant.c:3098:12: warning: variable 'is_visible1' set but not used [-Wunused-but-set-variable]
Boolean is_visible1, is_visible2;
^
dotvibrant.c:3095:51: warning: variable 'V1Height' set but not used [-Wunused-but-set-variable]
Int2 height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
^
dotvibrant.c: In function 'DOT_HideFeatDlg':
dotvibrant.c:3745:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
dotvibrant.c: In function 'DOT_SVBuildDiagViewer':
dotvibrant.c:4031:18: warning: variable 'mip' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip;
^
dotvibrant.c:4029:28: warning: unused variable 'str2' [-Wunused-variable]
Char str1[41]={""}, str2[41]={""};
^
dotvibrant.c:4029:13: warning: unused variable 'str1' [-Wunused-variable]
Char str1[41]={""}, str2[41]={""};
^
dotvibrant.c:4022:18: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:4022:13: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c: In function 'DOT_UpdateDataRects':
dotvibrant.c:4166:19: warning: variable 'dy' set but not used [-Wunused-but-set-variable]
Int4 comp, dx, dy, xstart, ystart;
^
dotvibrant.c:4166:15: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
Int4 comp, dx, dy, xstart, ystart;
^
dotvibrant.c: In function 'DOT_MsgFunc':
dotvibrant.c:4215:17: warning: variable 'vdp2' set but not used [-Wunused-but-set-variable]
DOTVibDataPtr vdp2 = NULL;
^
dotvibrant.c: In function 'DOT_ReleaseProc':
dotvibrant.c:4373:32: warning: unused variable 'yaxis_incr' [-Wunused-variable]
Boolean xaxis_incr=TRUE, yaxis_incr=TRUE;
^
dotvibrant.c:4373:15: warning: unused variable 'xaxis_incr' [-Wunused-variable]
Boolean xaxis_incr=TRUE, yaxis_incr=TRUE;
^
dotvibrant.c:4371:19: warning: variable 'alp' set but not used [-Wunused-but-set-variable]
DOTAlignInfoPtr alp=NULL;
^
dotvibrant.c:4370:18: warning: variable 'mip1' set but not used [-Wunused-but-set-variable]
DOTMainDataPtr mip1=NULL;
^
dotvibrant.c: In function 'DOT_StartDOTPLOT':
dotvibrant.c:4891:23: warning: variable 'vdp' set but not used [-Wunused-but-set-variable]
DOTVibDataPtr vdp;
^
dotvibrant.c: In function 'DOT_DoZoom':
dotvibrant.c:5106:18: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c: In function 'DOT_ZoomProc':
dotvibrant.c:5204:23: warning: variable 'temport' set but not used [-Wunused-but-set-variable]
WindoW temport, w;
^
dotvibrant.c: In function 'AlnMgr2GetNextLine':
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
*n++;
^
dotvibrant.c: In function 'DOT_GetAlign':
dotvibrant.c:5332:44: warning: variable 'n' set but not used [-Wunused-but-set-variable]
Int4 x1, y1, x2, y2, numlines=0, n=0, i=0;
^
dotvibrant.c: In function 'DOT_FillAlignInfoPointer':
dotvibrant.c:5565:16: warning: unused variable 'i' [-Wunused-variable]
Int4 i=0, n=0;
^
dotvibrant.c: In function 'DOT_Prob_FillAlignInfoPointer':
dotvibrant.c:5681:16: warning: unused variable 'i' [-Wunused-variable]
Int4 i=0, n=0;
^
dotvibrant.c:5680:16: warning: unused variable 'numsaps' [-Wunused-variable]
Int4 numsaps = 0, numlines = 0;
^
dotvibrant.c:5678:37: warning: unused variable 'sap_tmp' [-Wunused-variable]
SeqAlignPtr sap=NULL, salp=NULL, sap_tmp=NULL;
^
dotvibrant.c: In function 'DOT_DoBlast':
dotvibrant.c:5918:23: warning: unused variable 'eval' [-Wunused-variable]
Char eval[11]={""};
^
dotvibrant.c:5917:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
Boolean is_local;
^
dotvibrant.c:5915:23: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID=0;
^
dotvibrant.c: In function 'DOT_CreateWindowDetails':
dotvibrant.c:6214:27: warning: variable 'pr2' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:6214:22: warning: variable 'pr1' set but not used [-Wunused-but-set-variable]
PrompT pr1, pr2;
^
dotvibrant.c:6207:21: warning: variable 'g1' set but not used [-Wunused-but-set-variable]
GrouP g, g1, g2;
^
dotvibrant.c: In function 'DOT_ResizeMainWindow':
dotvibrant.c:6273:35: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int2 height, width, in , gap;
^
dotvibrant.c: In function 'DOT_FindAlignment':
dotvibrant.c:6662:29: warning: unused variable 'rb_fixed' [-Wunused-variable]
Boolean lt_fixed=FALSE, rb_fixed=FALSE;
^
dotvibrant.c:6662:13: warning: unused variable 'lt_fixed' [-Wunused-variable]
Boolean lt_fixed=FALSE, rb_fixed=FALSE;
^
dotvibrant.c:6661:17: warning: variable 'data' set but not used [-Wunused-but-set-variable]
DOTSelDataPtr data;
^
dotvibrant.c: In function 'SCP_CompareOrderOrganizeBioseqs':
dotvibrant.c:6792:25: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
Uint4 itemID=0;
^
dotvibrant.c: In function 'SCP_OrganizeAlnsInSet':
dotvibrant.c:6873:21: warning: variable 'indextype' set but not used [-Wunused-but-set-variable]
Int4 indextype;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from ../include/dotviewer.h:32,
from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/dotviewer.h:32,
from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dotvibrant.c:2760:16: warning: 'DOT_SVGetDiag' defined but not used [-Wunused-function]
static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
^
dotvibrant.c:2954:13: warning: 'DOT_SVChangeLabels' defined but not used [-Wunused-function]
static void DOT_SVChangeLabels (GrouP g)
^
dotvibrant.c:3318:13: warning: 'DOT_AddFeatureToSegment' defined but not used [-Wunused-function]
static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
^
dotvibrant.c:3688:13: warning: 'DOT_HideAcceptProc' defined but not used [-Wunused-function]
static void DOT_HideAcceptProc(ButtoN b)
^
dotvibrant.c:4213:25: warning: 'DOT_MsgFunc' defined but not used [-Wunused-function]
static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
^
dotvibrant.c:4749:13: warning: 'DOT_GetInfoProc' defined but not used [-Wunused-function]
static void DOT_GetInfoProc (IteM i)
^
dotvibrant.c:4767:13: warning: 'DOT_FeatAnalysisProc' defined but not used [-Wunused-function]
static void DOT_FeatAnalysisProc(ButtoN b)
^
dotvibrant.c:5281:16: warning: 'AlnMgr2GetNextLine' defined but not used [-Wunused-function]
static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
^
dotvibrant.c:5325:16: warning: 'DOT_GetAlign' defined but not used [-Wunused-function]
static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
^
dotvibrant.c:5894:16: warning: 'DOT_get_eval' defined but not used [-Wunused-function]
static FloatHi DOT_get_eval(Int4 exp)
^
dotvibrant.c:6346:13: warning: 'DOT_NewAnalysis' defined but not used [-Wunused-function]
static void DOT_NewAnalysis (ButtoN b)
^
dotvibrant.c:6642:16: warning: 'DOT_DeselectPrim' defined but not used [-Wunused-function]
static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
^
dotvibrant.c: In function 'DOT_GetNthSeqFromAlign':
dotvibrant.c:5072:11: warning: 'spp' may be used uninitialized in this function [-Wmaybe-uninitialized]
ctr = SeqPortRead(spp, buffer, 100);
^
dotvibrant.c: In function 'DOT_SVPopulateSequenceViewer':
dotvibrant.c:2611:32: warning: 'strand2' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2380:23: note: 'strand2' was declared here
Uint1 strand1, strand2;
^
dotvibrant.c:2611:32: warning: 'strand1' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2380:14: note: 'strand1' was declared here
Uint1 strand1, strand2;
^
dotvibrant.c:2583:37: warning: 'residue_names' may be used uninitialized in this function [-Wmaybe-uninitialized]
sBuf[c]=*residue_names[(int)*s];
^
dotvibrant.c:2378:16: note: 'residue_names' was declared here
CharPtr PNTR residue_names;
^
dotvibrant.c:2611:32: warning: 's_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2370:42: note: 's_pos' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2611:32: warning: 'q_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
^
dotvibrant.c:2370:35: note: 'q_pos' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2504:11: warning: 'hit_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
hit_stop+=hit_stop/10;
^
dotvibrant.c:2370:25: note: 'hit_stop' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2614:32: warning: 'hit_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOT_HlSeq(sbSeg, rc, margin, i, BLOCK_SIZE, hit_start, hit_stop, Fh, chw_2);
^
dotvibrant.c:2370:14: note: 'hit_start' was declared here
Int4 hit_start, hit_stop, q_pos, s_pos;
^
dotvibrant.c:2503:16: warning: 'buf_len' may be used uninitialized in this function [-Wmaybe-uninitialized]
end=s+buf_len-1;
^
dotvibrant.c:2367:21: note: 'buf_len' was declared here
Int4 vis_2, buf_len;
^
dotvibrant.c:2545:18: warning: 'is_na' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_na)
^
dotvibrant.c:2361:27: note: 'is_na' was declared here
Boolean ambig=FALSE, is_na;
^
dotvibrant.c:2503:6: warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized]
end=s+buf_len-1;
^
dotvibrant.c:2357:14: note: 's' was declared here
Uint1Ptr s;
^
dotvibrant.c:2356:14: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint1Ptr q;
^
dotvibrant.c: In function 'DOT_MakeMainViewer':
dotvibrant.c:6248:10: warning: 's_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:44: note: 's_stop' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 's_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:35: note: 's_start' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'q_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:27: note: 'q_stop' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'q_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6209:18: note: 'q_start' was declared here
Int4 q_start, q_stop, s_start, s_stop;
^
dotvibrant.c:6248:10: warning: 'sname' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6208:35: note: 'sname' was declared here
Char PNTR qname, PNTR sname;
^
dotvibrant.c:6248:10: warning: 'qname' may be used uninitialized in this function [-Wmaybe-uninitialized]
sprintf(vdp->iInfo, "%s (x-axis)[%d..%d] vs. %s (y-axis)[%d..%d]", qname, q_start, q_stop, sname, s_start, s_stop);
^
dotvibrant.c:6208:23: note: 'qname' was declared here
Char PNTR qname, PNTR sname;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
dlgutil1.c: In function 'IsAuthList':
dlgutil1.c:3008:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
dlgutil1.c: In function 'TestAuthorDialog':
dlgutil1.c:3357:20: warning: unused variable 'cp' [-Wunused-variable]
CharPtr cp;
^
dlgutil1.c: In function 'TestIntervalEditor':
dlgutil1.c:5318:20: warning: variable 'fuzz_to' set but not used [-Wunused-but-set-variable]
Int2 fuzz_to;
^
dlgutil1.c:5317:20: warning: variable 'fuzz_from' set but not used [-Wunused-but-set-variable]
Int2 fuzz_from;
^
dlgutil1.c:5316:41: warning: variable 'fuzz_before' set but not used [-Wunused-but-set-variable]
Boolean isInterval, isPoint, fuzz_before, fuzz_after;
^
dlgutil1.c: In function 'CreateStandardEditMenu':
dlgutil1.c:9189:8: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dlgutil1.c:8061:16: warning: 'ParseSpecimenVoucherOk' defined but not used [-Wunused-function]
static Boolean ParseSpecimenVoucherOk (CharPtr str)
^
dlgutil1.c:8378:25: warning: 'GetNthNameValuePair' defined but not used [-Wunused-function]
static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
dlgutil2.c: In function 'CreateImportFields':
dlgutil2.c:1401:19: warning: variable 'is_gap' set but not used [-Wunused-but-set-variable]
Boolean is_gap = FALSE;
^
dlgutil2.c: In function 'UpdateTableDisplayDialogScrollBars':
dlgutil2.c:3532:11: warning: variable 'y' set but not used [-Wunused-but-set-variable]
Int4 x, y;
^
dlgutil2.c:3532:8: warning: variable 'x' set but not used [-Wunused-but-set-variable]
Int4 x, y;
^
dlgutil2.c: In function 'GetTableDisplayCell':
dlgutil2.c:3931:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
Int4 start_row, start_col;
^
dlgutil2.c: In function 'NewCreateInferenceDialog':
dlgutil2.c:7600:19: warning: variable 'fnt' set but not used [-Wunused-but-set-variable]
FonT fnt;
^
dlgutil2.c: In function 'ClickableListOnKey':
dlgutil2.c:10202:20: warning: variable 'clp' set but not used [-Wunused-but-set-variable]
ClickableListPtr clp;
^
dlgutil2.c: In function 'GetSelectedClickableListText':
dlgutil2.c:10874:36: warning: variable 'char_offset' set but not used [-Wunused-but-set-variable]
Int2 item, row, col, char_offset;
^
dlgutil2.c: In function 'AutomatchFeatures':
dlgutil2.c:13840:36: warning: variable 's3' set but not used [-Wunused-but-set-variable]
SeqIntPtr s1, s2, s3;
^
dlgutil2.c: At top level:
dlgutil2.c:1672:16: warning: 'GetNameForFeature' defined but not used [-Wunused-function]
static CharPtr GetNameForFeature (SeqFeatPtr sfp)
^
dlgutil2.c:8577:13: warning: 'GetCategoryNumFromName' defined but not used [-Wunused-function]
static Int4 GetCategoryNumFromName (CharPtr category)
^
dlgutil2.c:10039:13: warning: 'DrawClickableListItem' defined but not used [-Wunused-function]
static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
^
dlgutil2.c:10059:13: warning: 'ClickClickableListItem' defined but not used [-Wunused-function]
static void ClickClickableListItem (DoC d, PoinT pt)
^
dlgutil2.c:11993:16: warning: 'ParseMultiListQualOk' defined but not used [-Wunused-function]
static Boolean ParseMultiListQualOk (CharPtr val)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
e2trmlst.c: In function 'ReadAFew':
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF e2docsum.c
e2docsum.c: In function 'FormatCdsSeq':
e2docsum.c:1523:22: warning: variable 'gene' set but not used [-Wunused-but-set-variable]
SeqFeatPtr gene = NULL;
^
e2docsum.c: In function 'FetchSequence':
e2docsum.c:1591:16: warning: variable 'currDbName' set but not used [-Wunused-but-set-variable]
CharPtr currDbName;
^
e2docsum.c:1580:16: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
Uint1 group_segs = 0;
^
e2docsum.c: In function 'SaveDocsumProject':
e2docsum.c:3606:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SummFormPtr sfp;
^
e2docsum.c: In function 'RetrieveGeneration':
e2docsum.c:4135:19: warning: variable 'e2ip' set but not used [-Wunused-but-set-variable]
Entrez2InfoPtr e2ip;
^
e2docsum.c: In function 'SetupMenus':
e2docsum.c:4849:16: warning: variable 'c' set but not used [-Wunused-but-set-variable]
ChoicE c;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/dlogutil.h:50,
from ../include/bspview.h:48,
from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strucapi.h:52:0,
from e2docsum.c:62:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
e2docsum.c:2154:20: warning: 'cddDocProcs' defined but not used [-Wunused-variable]
static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
^
e2docsum.c:2850:13: warning: 'GetBiostrucComplexity' defined but not used [-Wunused-function]
static Int4 GetBiostrucComplexity (void)
^
e2docsum.c:2883:13: warning: 'GetBiostrucMaxModels' defined but not used [-Wunused-function]
static Int4 GetBiostrucMaxModels (void)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
asn2graphic.c: In function 'ParseFilterItem':
asn2graphic.c:1191:21: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int2 i, j;
^
asn2graphic.c: In function 'GeneProductsLayoutInternal':
asn2graphic.c:3730:36: warning: variable 'featureStart' set but not used [-Wunused-but-set-variable]
Int4 newLeft, featureStart, rowMaxRight;
^
asn2graphic.c: In function 'ScaleSntDrawProc':
asn2graphic.c:4401:28: warning: variable 'r' set but not used [-Wunused-but-set-variable]
RecT r;
^
asn2graphic.c: In function 'GphSentProc':
asn2graphic.c:4996:16: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
Int4 scaleY;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
asn2graphic.c: In function 'ProcessRows':
asn2graphic.c:4361:37: warning: 'SegmentTreeBot' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (! EnsureFeatureHasSegment (FPSP, featdeftype, SegmentTreeBot)) return 0;
^
asn2graphic.c:4353:24: warning: 'SegmentTreeMid' may be used uninitialized in this function [-Wmaybe-uninitialized]
SegmentTreeBot = CreateSegment (SegmentTreeMid, 0, 0);
^
asn2graphic.c:4349:24: warning: 'SegmentTreeTop' may be used uninitialized in this function [-Wmaybe-uninitialized]
SegmentTreeMid = CreateSegment (SegmentTreeTop , 0, 0);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF medview.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from bspview.c:61:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gbfview.c
gbfview.c: In function 'RelModeFailText':
gbfview.c:1004:22: warning: variable 'hasPubs' set but not used [-Wunused-but-set-variable]
Boolean hasPubs;
^
gbfview.c: In function 'PopulateFlatFile':
gbfview.c:1289:22: warning: variable 'doColors' set but not used [-Wunused-but-set-variable]
Boolean doColors;
^
gbfview.c: In function 'PopulateFasta':
gbfview.c:1714:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
if (ISA_na (bsp->mol)) {TRUE,
^
gbfview.c:1646:20: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
Uint1 group_segs;
^
gbfview.c: In function 'PopulateAsnOrXML':
gbfview.c:1969:16: warning: variable 'lookupFar' set but not used [-Wunused-but-set-variable]
Boolean lookupFar = FALSE;
^
gbfview.c:1968:16: warning: variable 'lockFar' set but not used [-Wunused-but-set-variable]
Boolean lockFar = FALSE;
^
gbfview.c: At top level:
gbfview.c:289:16: warning: 'ColorIcon' defined but not used [-Wunused-function]
static Boolean ColorIcon (
^
gbfview.c:944:13: warning: 'LookForPubs' defined but not used [-Wunused-function]
static void LookForPubs (BioseqPtr bsp, Pointer userdata)
^
gbfview.c:1212:13: warning: 'LookForFarBsp' defined but not used [-Wunused-function]
static void LookForFarBsp (
^
gbfview.c:1231:13: warning: 'LookForFarProds' defined but not used [-Wunused-function]
static void LookForFarProds (
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gphview.c
gphview.c: In function 'ReleaseAlignment':
gphview.c:1306:18: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp;
^
gphview.c: In function 'DrawAlignOnAllSequences':
gphview.c:1391:10: warning: variable 'vn' set but not used [-Wunused-but-set-variable]
ValNode vn;
^
gphview.c: In function 'ReleaseDesktop':
gphview.c:1836:18: warning: variable 'seg' set but not used [-Wunused-but-set-variable]
SegmenT seg;
^
gphview.c: In function 'AutoScrollGeneName':
gphview.c:2100:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
Int2 num;
^
gphview.c: In function 'DisplayGeneChoiceWindow':
gphview.c:2426:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
PrompT p;
^
gphview.c: In function 'PrintGraphical':
gphview.c:3268:14: warning: unused variable 'ans' [-Wunused-variable]
MsgAnswer ans;
^
gphview.c: In function 'PopulateAsn2GphGraphic':
gphview.c:3868:16: warning: variable 'min' set but not used [-Wunused-but-set-variable]
Int4 min;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gphdraw.c
gphdraw.c: In function 'GraphSentProc':
gphdraw.c:195:18: warning: variable 'scaleY' set but not used [-Wunused-but-set-variable]
Int4 scaleY;
^
gphdraw.c: In function 'DrawGraphToPanel':
gphdraw.c:453:27: warning: variable 'xp' set but not used [-Wunused-but-set-variable]
Int4Ptr xpoints, xp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gxydraw.c
gxydraw.c: In function 'DotXYPlot':
gxydraw.c:259:19: warning: 'xaxiscount' may be used uninitialized in this function [-Wmaybe-uninitialized]
gsp->xaxiscount = xaxiscount;
^
gxydraw.c:182:19: note: 'xaxiscount' was declared here
Int4 xaxiscount, yaxiscount;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqpanel.c
seqpanel.c: In function 'FillFeatureInfo':
seqpanel.c:427:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c:427:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c: In function 'DrawFeatureCodonLines':
seqpanel.c:1897:21: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
Char tmp[2];
^
seqpanel.c: In function 'DrawFeature':
seqpanel.c:2127:21: warning: variable 'prot_len' set but not used [-Wunused-but-set-variable]
Int4 prot_len;
^
seqpanel.c: In function 'GetSeqChapterFeatureInfo':
seqpanel.c:3136:18: warning: variable 'stop' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c:3136:11: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 j, start, stop;
^
seqpanel.c: In function 'onSeqEdVScrollBarSeqPanel':
seqpanel.c:3406:17: warning: variable 'totallines' set but not used [-Wunused-but-set-variable]
Int4 totallines;
^
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3812:28: warning: variable 'fRight' set but not used [-Wunused-but-set-variable]
Int4 fLeft, fRight, swap;
^
seqpanel.c:3812:21: warning: variable 'fLeft' set but not used [-Wunused-but-set-variable]
Int4 fLeft, fRight, swap;
^
seqpanel.c: In function 'PrintTranslatedFrame':
seqpanel.c:3966:17: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
Char tmp[2];
^
seqpanel.c: In function 'ExportSequenceText':
seqpanel.c:4372:15: warning: pointer targets in passing argument 1 of 'complement_string' differ in signedness [-Wpointer-sign]
complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
^
In file included from ../include/alignmgr2.h:112:0,
from seqpanel.c:39:
../include/salutil.h:78:20: note: expected 'Nlm_CharPtr' but argument is of type 'Nlm_Uint1Ptr'
NLM_EXTERN CharPtr complement_string (CharPtr str);
^
seqpanel.c:4236:17: warning: variable 'curr_para_strings' set but not used [-Wunused-but-set-variable]
ValNodePtr curr_para_strings = NULL;
^
seqpanel.c:4229:17: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1Ptr buf;
^
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:4946:21: warning: variable 'direction' set but not used [-Wunused-but-set-variable]
Int4 direction;
^
seqpanel.c: In function 'SeqAlnOnDrag':
seqpanel.c:5685:34: warning: variable 'is_ctrl' set but not used [-Wunused-but-set-variable]
Boolean is_double_click, is_ctrl;
^
seqpanel.c:5685:17: warning: variable 'is_double_click' set but not used [-Wunused-but-set-variable]
Boolean is_double_click, is_ctrl;
^
seqpanel.c: In function 'ResizeSeqEdView':
seqpanel.c:5760:8: warning: variable 'sequence_pos' set but not used [-Wunused-but-set-variable]
Int4 sequence_pos = 0;
^
seqpanel.c:5755:8: warning: variable 'height' set but not used [-Wunused-but-set-variable]
Int4 height, width;
^
seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx':
seqpanel.c:8664:15: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c:8664:15: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c: In function 'WriteAlignmentContiguousToFile':
seqpanel.c:8760:13: warning: passing argument 1 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'const char * __restrict__' but argument is of type 'struct FILE *'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c:8760:13: warning: passing argument 2 of 'fputs' from incompatible pointer type [enabled by default]
fputs (fp, printed_line);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from ../include/vibtypes.h:94,
from ../include/vibrant.h:124,
from ../include/dlogutil.h:48,
from ../include/bspview.h:48,
from seqpanel.c:33:
/usr/include/stdio.h:689:12: note: expected 'struct FILE * __restrict__' but argument is of type 'Nlm_CharPtr'
extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
^
seqpanel.c: In function 'ReverseSequenceStrandsInAlignment':
seqpanel.c:9007:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
seqpanel.c:1171:16: warning: 'GetAlignmentColumnPercentIDsForAlignmentSection' defined but not used [-Wunused-function]
static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
^
seqpanel.c: In function 'SeqEdFindPatternDialog':
seqpanel.c:7707:16: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) p1, (HANDLE) fdp->pattern_txt, (HANDLE)fdp->prompt,
^
seqpanel.c: In function 'PrintFeature':
seqpanel.c:3726:24: warning: 'str_prot' may be used uninitialized in this function [-Wmaybe-uninitialized]
prot_len = StringLen (str_prot);
^
seqpanel.c:3810:21: note: 'str_prot' was declared here
CharPtr str_prot;
^
seqpanel.c: In function 'SeqEdExportProc':
seqpanel.c:4353:38: warning: 'seq_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
^
seqpanel.c:4233:17: note: 'seq_pos' was declared here
Int4 seq_pos;
^
seqpanel.c: In function 'SeqEdOnClick':
seqpanel.c:5026:10: warning: 'is_left_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (is_left_end)
^
seqpanel.c:5030:15: warning: 'is_right_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if (is_right_end)
^
seqpanel.c: In function 'onDrawSeqPanel':
seqpanel.c:1301:24: warning: 'alnbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemCpy(buf, alnbuf + from, len);
^
seqpanel.c:2466:33: note: 'alnbuf' was declared here
Uint1Ptr buf, seqbuf, alnbuf;
^
seqpanel.c:1252:29: warning: 'seqbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
^
seqpanel.c:2466:25: note: 'seqbuf' was declared here
Uint1Ptr buf, seqbuf, alnbuf;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ingengraph.c
ingengraph.c: In function 'Ing_BigEncodeIdxFeat':
ingengraph.c:262:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
return *((Uint8Ptr) index_g);
^
ingengraph.c: In function 'Ing_AddOneAlignToOverviewPage':
ingengraph.c:347:13: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp=NULL;
^
ingengraph.c: In function 'Ing_AddAlignsToOverviewPage':
ingengraph.c:372:18: warning: unused variable 'buf' [-Wunused-variable]
Char buf[41]={""};
^
ingengraph.c:367:18: warning: variable 'NewLine' set but not used [-Wunused-but-set-variable]
Boolean NewLine=FALSE;
^
ingengraph.c: In function 'Ing_DrawOverviewPage':
ingengraph.c:492:14: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
Int4 offset;
^
In file included from ../include/vibrant.h:130:0,
from ../include/ingengraph.h:54,
from ingengraph.c:45:
../include/vibdefns.h:438:17: warning: unused variable 'Nlm_Visible' [-Wunused-variable]
#define Visible Nlm_Visible
^
ingengraph.c:488:14: note: in expansion of macro 'Visible'
Boolean Visible=FALSE;
^
ingengraph.c: In function 'Ing_PopOverviewPage':
ingengraph.c:715:16: warning: variable 'margin' set but not used [-Wunused-but-set-variable]
Int4 margin, len;
^
ingengraph.c:714:16: warning: unused variable 'buf' [-Wunused-variable]
Char buf[50]={""};
^
ingengraph.c:708:16: warning: unused variable 'sanp' [-Wunused-variable]
SeqAnnotPtr sanp=NULL;
^
ingengraph.c: In function 'Ing_PopDetailedPage':
ingengraph.c:1437:16: warning: variable 'CurrentSeg' set but not used [-Wunused-but-set-variable]
SegmenT CurrentSeg=NULL;
^
ingengraph.c: In function 'Ing_ExploreSegments':
ingengraph.c:1829:22: warning: unused variable 'isDraft' [-Wunused-variable]
Boolean isDraft = FALSE;
^
ingengraph.c:1827:22: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp = NULL;
^
ingengraph.c:1826:22: warning: unused variable 'gbp' [-Wunused-variable]
GBBlockPtr gbp = NULL;
^
ingengraph.c:1824:33: warning: variable 'black' set but not used [-Wunused-but-set-variable]
Uint1 orange[3], black[3];
^
ingengraph.c:1823:33: warning: variable 'lime' set but not used [-Wunused-but-set-variable]
Uint1 indigo[3], lime[3];
^
ingengraph.c:1823:22: warning: variable 'indigo' set but not used [-Wunused-but-set-variable]
Uint1 indigo[3], lime[3];
^
ingengraph.c: In function 'Ing_AddGCRect':
ingengraph.c:1933:17: warning: variable 'comp2' set but not used [-Wunused-but-set-variable]
FloatHi comp2, comp_prev;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/ingengraph.h:63,
from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
ingengraph.c:71:13: warning: 'Ing_GetNamesZoomedVal' declared 'static' but never defined [-Wunused-function]
static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
^
ingengraph.c:583:24: warning: 'Ing_SortByChoice' defined but not used [-Wunused-function]
static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
^
ingengraph.c:602:28: warning: 'Ing_CollectFeatures1' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ingenext.c
ingenext.c: In function 'Ing_KeepTheBestAlignments':
ingenext.c:167:20: warning: variable 'amaip' set but not used [-Wunused-but-set-variable]
AMAlignIndex2Ptr amaip = NULL;
^
ingenext.c: In function 'Ing_HandleQBlastResults':
ingenext.c:272:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
^
ingenext.c: In function 'Ing_HandleResults':
ingenext.c:535:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
^
ingenext.c: In function 'Ing_AccepttRNAargsProc':
ingenext.c:739:18: warning: unused variable 'paramlist' [-Wunused-variable]
ValNodePtr paramlist = NULL;
^
ingenext.c: In function 'Ing_tRNAscanProc':
ingenext.c:915:22: warning: unused variable 'moveMe' [-Wunused-variable]
ValNodePtr moveMe = NULL;
^
ingenext.c:906:22: warning: unused variable 'first' [-Wunused-variable]
TexT first = NULL;
^
ingenext.c:902:22: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
ingenext.c:896:17: warning: unused variable 'args' [-Wunused-variable]
CharPtr args = NULL;
^
ingenext.c: In function 'Ing_ReadtRNAConfigFile':
ingenext.c:1125:15: warning: variable 'demomode' set but not used [-Wunused-but-set-variable]
Boolean demomode = FALSE;
^
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1312:23: warning: variable 'is_local' set but not used [-Wunused-but-set-variable]
Boolean is_local, first_bsp=TRUE;
^
ingenext.c: In function 'Ing_CreateDotMatrixForm':
ingenext.c:1834:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
^
ingenext.c: In function 'Ing_RunSpidey':
ingenext.c:1994:20: warning: unused variable 'sanp' [-Wunused-variable]
SeqAnnotPtr sanp = NULL;
^
ingenext.c:1993:20: warning: unused variable 'spidp_next' [-Wunused-variable]
SPI_mRNAPtr spidp_next = NULL;
^
ingenext.c:1992:20: warning: unused variable 'spidp_head' [-Wunused-variable]
SPI_mRNAPtr spidp_head = NULL;
^
ingenext.c: In function 'Ing_ReadmRNAs_ext':
ingenext.c:2025:4: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
^
ingenext.c: In function 'Ing_DeleteInsertInGenomic':
ingenext.c:2522:16: warning: unused variable 'newsegs' [-Wunused-variable]
Int2 newsegs = 0, offset = 0;
^
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2615:21: warning: unused variable 'str' [-Wunused-variable]
Char str[200] = {""};
^
ingenext.c:2612:22: warning: unused variable 'amaip' [-Wunused-variable]
AMAlignIndex2Ptr amaip = NULL;
^
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3025:15: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip = NULL;
^
ingenext.c: In function 'Ing_PrintSpideyReport':
ingenext.c:3471:27: warning: variable 'gmis' set but not used [-Wunused-but-set-variable]
Int4 mmis, gmis, miscount = 0;
^
ingenext.c: In function 'Ing_PrintBlastReport':
ingenext.c:3853:18: warning: unused variable 'more' [-Wunused-variable]
Boolean more = FALSE;
^
In file included from ../include/vibrant.h:130:0,
from ../include/dlogutil.h:48,
from ../include/import.h:48,
from ../include/ingenwin.h:64,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/vibdefns.h:622:16: warning: variable 'Nlm_DkGray' set but not used [-Wunused-but-set-variable]
#define DkGray Nlm_DkGray
^
ingenext.c:3850:18: note: in expansion of macro 'DkGray'
Uint1 DkGray[3];
^
ingenext.c: In function 'Ing_PopulateReport':
ingenext.c:4328:20: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip=NULL;
^
ingenext.c:4324:20: warning: unused variable 'temp' [-Wunused-variable]
CharPtr temp = NULL;
^
ingenext.c: In function 'Ing_ResizeReportWindow':
ingenext.c:4484:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/ingenwin.h:60,
from ../include/ingenext.h:53,
from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from ../include/ingenwin.h:62,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from ../include/ingenwin.h:62,
from ../include/ingenext.h:53,
from ingenext.c:46:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
ingenext.c:59:28: warning: 'Ing_BlastCallback' defined but not used [-Wunused-function]
static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
^
ingenext.c:129:13: warning: 'querytimerlimit' defined but not used [-Wunused-variable]
static Int4 querytimerlimit = 100;
^
ingenext.c:130:13: warning: 'querytimercount' defined but not used [-Wunused-variable]
static Int4 querytimercount = 0;
^
ingenext.c: In function 'Ing_DoBlast2Seqs':
ingenext.c:1457:17: warning: 'e_head' may be used uninitialized in this function [-Wmaybe-uninitialized]
e_tmp->next=e_head;
^
ingenext.c: In function 'Ing_MismatchProc':
ingenext.c:3170:32: warning: 'gstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
gstart = start + (stop - gstart);
^
ingenext.c:3206:45: warning: 'mstart' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if (mstart == R1 || mstart == R2 || mstart == R3){
^
ingenext.c: In function 'Ing_ReplaceAllMismatchedInLocation':
ingenext.c:2617:33: warning: 'nmismatches' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 gmis, mmis, nmismatches, nkeep = 0;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ingenwin.c
ingenwin.c: In function 'Ing_PopulateDetailedPage':
ingenwin.c:134:22: warning: unused variable 'bSelected' [-Wunused-variable]
Boolean bSelected = FALSE;
^
ingenwin.c: In function 'Ing_DoRange':
ingenwin.c:394:22: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp;
^
ingenwin.c: In function 'Ing_PopulateCpG':
ingenwin.c:576:19: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
Int2 cxChar, nchars;
^
ingenwin.c: In function 'Ing_ResizeCpGWindow':
ingenwin.c:642:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
ingenwin.c: In function 'Ing_PopulateMotif':
ingenwin.c:718:26: warning: variable 'nchars' set but not used [-Wunused-but-set-variable]
Int2 cxChar, nchars;
^
ingenwin.c:717:24: warning: variable 'swidth' set but not used [-Wunused-but-set-variable]
Int4 slen, swidth;
^
ingenwin.c:717:18: warning: variable 'slen' set but not used [-Wunused-but-set-variable]
Int4 slen, swidth;
^
ingenwin.c: In function 'Ing_ResizeMotifWindow':
ingenwin.c:785:12: warning: unused variable 'name' [-Wunused-variable]
CharPtr name = NULL;
^
ingenwin.c:783:12: warning: variable 'hsb' set but not used [-Wunused-but-set-variable]
BaR hsb;
^
ingenwin.c: In function 'Ing_ShowComplexity':
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
^
ingenwin.c: In function 'Ing_CreateNewFeature':
ingenwin.c:1301:22: warning: unused variable 'rnatype' [-Wunused-variable]
Uint1 rnatype=0;
^
ingenwin.c: In function 'Ing_GetAlignmentIntervals':
ingenwin.c:1418:20: warning: unused variable 'master' [-Wunused-variable]
SeqIdPtr master = NULL;
^
ingenwin.c: In function 'Ing_OldGetAlignmentIntervals':
ingenwin.c:1494:20: warning: unused variable 'master' [-Wunused-variable]
SeqIdPtr master = NULL;
^
ingenwin.c: In function 'Ing_OldMakeLocListFromSAP':
ingenwin.c:1613:26: warning: unused variable 'slp2' [-Wunused-variable]
SeqLocPtr slp1 = NULL, slp2 = NULL;
^
ingenwin.c:1613:13: warning: unused variable 'slp1' [-Wunused-variable]
SeqLocPtr slp1 = NULL, slp2 = NULL;
^
ingenwin.c: In function 'Ing_OM_MsgFunc':
ingenwin.c:2380:15: warning: the address of 'sfc' will always evaluate as 'true' [-Waddress]
if (&sfc)
^
ingenwin.c:2284:22: warning: unused variable 'segID' [-Wunused-variable]
Uint2 segID=0;
^
ingenwin.c:2280:22: warning: unused variable 'sep' [-Wunused-variable]
SeqEntryPtr sep=NULL;
^
ingenwin.c:2271:31: warning: unused variable 'number' [-Wunused-variable]
Int4 score=0, number=0;
^
ingenwin.c:2271:22: warning: unused variable 'score' [-Wunused-variable]
Int4 score=0, number=0;
^
ingenwin.c:2270:34: warning: unused variable 'n' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c:2270:28: warning: unused variable 's2' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c:2270:22: warning: unused variable 's1' [-Wunused-variable]
Int4 s1=0, s2=0, n=1;
^
ingenwin.c: In function 'Ing_MoveCursor':
ingenwin.c:2631:9: warning: variable 'grayClr2' set but not used [-Wunused-but-set-variable]
Uint1 grayClr2[3];
^
ingenwin.c: In function 'Ing_FeatViewerClickProc':
ingenwin.c:2814:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
^
ingenwin.c:2804:14: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp=NULL;
^
ingenwin.c: In function 'Ing_SequenceClickProc':
ingenwin.c:2908:22: warning: variable 'ssp' set but not used [-Wunused-but-set-variable]
SelStructPtr ssp=NULL;
^
ingenwin.c: In function 'Ing_ReadInBlastAsn':
ingenwin.c:3077:19: warning: unused variable 'Report' [-Wunused-variable]
IngReportPtr Report=NULL;
^
ingenwin.c:3075:19: warning: unused variable 'sip' [-Wunused-variable]
SeqIdPtr sip=NULL;
^
ingenwin.c:3074:19: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp=NULL;
^
ingenwin.c:3073:19: warning: unused variable 'n_sap' [-Wunused-variable]
SeqAlignPtr n_sap=NULL;
^
ingenwin.c: In function 'Ing_ParseSeqIdFile':
ingenwin.c:3142:20: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp=NULL;
^
ingenwin.c: In function 'Ing_ReadInFeatureTable':
ingenwin.c:3194:20: warning: variable 'sanp' set but not used [-Wunused-but-set-variable]
SeqAnnotPtr sanp;
^
ingenwin.c: In function 'Ing_AssembleGenscanInfo':
ingenwin.c:3258:17: warning: unused variable 'slp' [-Wunused-variable]
SeqLocPtr slp=NULL;
^
ingenwin.c: In function 'Ing_ReadInGenscan':
ingenwin.c:3300:33: warning: unused variable 'str' [-Wunused-variable]
CharPtr letter=NULL, str=NULL;
^
ingenwin.c:3300:20: warning: unused variable 'letter' [-Wunused-variable]
CharPtr letter=NULL, str=NULL;
^
ingenwin.c:3298:33: warning: unused variable 'first_pass' [-Wunused-variable]
Boolean found=FALSE, first_pass=FALSE;
^
ingenwin.c: In function 'Ing_AssembleTabDelimited':
ingenwin.c:3519:17: warning: variable 'score' set but not used [-Wunused-but-set-variable]
Int4 score;
^
ingenwin.c:3516:17: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp=NULL;
^
ingenwin.c: In function 'Ing_ReadInTabDelimited':
ingenwin.c:3659:40: warning: variable 'label_str' set but not used [-Wunused-but-set-variable]
CharPtr tmp=NULL, str=NULL, label_str=NULL;
^
ingenwin.c:3659:20: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp=NULL, str=NULL, label_str=NULL;
^
ingenwin.c:3653:20: warning: unused variable 'lip_tmp' [-Wunused-variable]
IngInfoPtr lip_tmp=NULL;
^
ingenwin.c:3650:20: warning: unused variable 'letter' [-Wunused-variable]
CharPtr letter=NULL;
^
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3984:16: warning: unused variable 'Report' [-Wunused-variable]
IngReportPtr Report=NULL;
^
ingenwin.c: In function 'Ing_FileOpenMain':
ingenwin.c:4078:21: warning: unused variable 'sep_orig' [-Wunused-variable]
SeqEntryPtr sep_orig=NULL, sep=NULL;
^
ingenwin.c: In function 'Ing_ResizeMainWindow':
ingenwin.c:4187:25: warning: variable 'InfoHeight' set but not used [-Wunused-but-set-variable]
Int2 RulerHeight, InfoHeight;
^
ingenwin.c: In function 'Ing_OpenFromFileORNetwork':
ingenwin.c:4491:25: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b,b2;
^
ingenwin.c: In function 'Ing_EditFeature':
ingenwin.c:4640:22: warning: variable 'igvp' set but not used [-Wunused-but-set-variable]
IngGenomeViewerPtr igvp=NULL;
^
ingenwin.c: In function 'Ing_MarkSeqAnnot':
ingenwin.c:4713:16: warning: unused variable 'bNoParent' [-Wunused-variable]
Boolean bNoParent = FALSE;
^
ingenwin.c: In function 'Ing_CreateMismatchedDialog':
ingenwin.c:4924:31: warning: 'main' is usually a function [-Wmain]
GrouP g, g1, g2, main;
^
ingenwin.c: In function 'Ing_PropagateClickProc':
ingenwin.c:5064:22: warning: unused variable 'primID' [-Wunused-variable]
Uint2 primID=0;
^
ingenwin.c:5063:22: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 itemtype=0;
^
ingenwin.c:5062:22: warning: unused variable 'itemID' [-Wunused-variable]
Uint4 itemID=0;
^
ingenwin.c:5061:22: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID=0;
^
ingenwin.c:5060:22: warning: unused variable 'ssp' [-Wunused-variable]
SelStructPtr ssp=NULL;
^
ingenwin.c:5059:22: warning: unused variable 'igvp' [-Wunused-variable]
IngGenomeViewerPtr igvp=NULL;
^
ingenwin.c: In function 'Ing_PrintCompProteins':
ingenwin.c:5146:32: warning: unused variable 'str2' [-Wunused-variable]
Char str1[200] = {""}, str2[10] = {""};
^
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5282:14: warning: variable 'ARROW' set but not used [-Wunused-but-set-variable]
Uint1 ARROW=NO_ARROW;
^
ingenwin.c:5279:14: warning: unused variable 'stringwidth' [-Wunused-variable]
Int4 stringwidth = 0;
^
ingenwin.c:5277:14: warning: unused variable 'left' [-Wunused-variable]
Int4 left = 10;
^
ingenwin.c:5276:14: warning: variable 'prim' set but not used [-Wunused-but-set-variable]
PrimitivE prim;
^
ingenwin.c: In function 'Ing_DoPropagate':
ingenwin.c:5596:14: warning: unused variable 'strErr' [-Wunused-variable]
Char strErr[50]={""};
^
ingenwin.c: In function 'Ing_GetFromNetwork':
ingenwin.c:7518:11: warning: unused variable 'szAppName' [-Wunused-variable]
Char szAppName [10]={"Ingenue"};
^
ingenwin.c: In function 'Ing_SetupMainWindow':
ingenwin.c:7761:16: warning: unused variable 'szAppName' [-Wunused-variable]
Char szAppName [10]={"Ingenue"};
^
ingenwin.c:7760:48: warning: unused variable 'str2' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
ingenwin.c:7760:33: warning: unused variable 'str1' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
ingenwin.c:7760:16: warning: unused variable 'title' [-Wunused-variable]
Char title[100]={""}, str1[20]={""}, str2[20]={""};
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/ingenwin.h:60,
from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ingenwin.h:61,
from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from ../include/ingenwin.h:62,
from ingenwin.c:45:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from ../include/ingenwin.h:62,
from ingenwin.c:45:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
ingenwin.c:1869:16: warning: 'Ing_DeSelectPrim' defined but not used [-Wunused-function]
static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
^
ingenwin.c:1487:23: warning: 'Ing_OldGetAlignmentIntervals' defined but not used [-Wunused-function]
static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
^
ingenwin.c:1610:18: warning: 'Ing_OldMakeLocListFromSAP' defined but not used [-Wunused-function]
static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
^
ingenwin.c:5535:16: warning: 'Ing_KeywordAlreadyInList' defined but not used [-Wunused-function]
static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
^
ingenwin.c:6717:13: warning: 'Ing_BspListProc' defined but not used [-Wunused-function]
static void Ing_BspListProc(IteM i)
^
ingenwin.c:7552:13: warning: 'Ing_ItemtoNetwork' defined but not used [-Wunused-function]
static void Ing_ItemtoNetwork(IteM i){
^
ingenwin.c: In function 'Ing_ReplaceMismatchedProc':
ingenwin.c:4902:37: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
^
ingenwin.c:4902:37: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function 'Ing_PropagateReport':
ingenwin.c:5224:12: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
last_pos = j;
^
ingenwin.c:5137:17: note: 'j' was declared here
Int4 i, j, k, row;
^
ingenwin.c: In function 'Ing_FileOpenSpecial':
ingenwin.c:3290:12: warning: 'strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
^
ingenwin.c:3255:17: note: 'strand' was declared here
Uint1 strand;
^
ingenwin.c: In function 'Ing_KozakProc':
ingenwin.c:1048:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:1049:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_SignalPeptideProc':
ingenwin.c:1099:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:1100:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_RepeatsProc':
ingenwin.c:997:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:998:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_PolyAProc':
ingenwin.c:946:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:947:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
ingenwin.c: In function 'Ing_CpGProc':
ingenwin.c:895:6: warning: 'ans' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (ans == ANS_NO)
^
ingenwin.c:896:11: warning: 'ReportW' may be used uninitialized in this function [-Wmaybe-uninitialized]
Select(ReportW);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF macrodlg.c
macrodlg.c: In function 'CloseMacroEditorWindowProc':
macrodlg.c:99:11: warning: unused variable 'do_remove' [-Wunused-variable]
Boolean do_remove = FALSE;
^
macrodlg.c: In function 'ExistingTextDialog':
macrodlg.c:1908:22: warning: variable 'ppt' set but not used [-Wunused-but-set-variable]
PrompT ppt;
^
macrodlg.c: In function 'SourceQualChoiceDialog':
macrodlg.c:3725:48: warning: variable 'b4' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c:3725:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3 = NULL, b4 = NULL;
^
macrodlg.c: In function 'SourceConstraintDialog':
macrodlg.c:3963:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:3963:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:3963:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c: In function 'CDSGeneProtQualConstraintDialog':
macrodlg.c:4277:37: warning: variable 'b3' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:4277:33: warning: variable 'b2' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c:4277:29: warning: variable 'b1' set but not used [-Wunused-but-set-variable]
ButtoN b1, b2, b3;
^
macrodlg.c: In function 'FeatureFieldTypeFromComplexConstraintType':
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_seqid' not handled in switch [-Wswitch]
switch (constraint_type) {
^
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_string' not handled in switch [-Wswitch]
macrodlg.c:10273:3: warning: enumeration value 'eComplexConstraintType_loc' not handled in switch [-Wswitch]
macrodlg.c: In function 'TestApplyActionDialog':
macrodlg.c:12680:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'TestEditActionDialog':
macrodlg.c:12854:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'TestRemoveOutsideActionDialog':
macrodlg.c:13012:8: warning: variable 'field_type' set but not used [-Wunused-but-set-variable]
Int2 field_type = 0;
^
macrodlg.c: In function 'AddMacroActions':
macrodlg.c:19633:25: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Boolean rval = FALSE;
^
macrodlg.c: In function 'PointerToSampleDialog':
macrodlg.c:19769:19: warning: variable 'max_char_per_line' set but not used [-Wunused-but-set-variable]
Int4 max_char_per_line;
^
macrodlg.c: In function 'SampleDialogCopy':
macrodlg.c:19889:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
macrodlg.c:19889:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
macrodlg.c: In function 'SingleMacroAcceptButton':
macrodlg.c:21177:33: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
Int4 num_fields, num_features;
^
macrodlg.c:21177:21: warning: variable 'num_fields' set but not used [-Wunused-but-set-variable]
Int4 num_fields, num_features;
^
macrodlg.c: In function 'LaunchMacroTemplateEditor':
macrodlg.c:22877:23: warning: variable 'bfp' set but not used [-Wunused-but-set-variable]
BaseFormPtr bfp;
^
macrodlg.c: At top level:
macrodlg.c:9778:15: warning: 'LocOrStringConstraintDialog' defined but not used [-Wunused-function]
static DialoG LocOrStringConstraintDialog (GrouP h, Nlm_ChangeNotifyProc change_notify, Pointer change_userdata)
^
macrodlg.c: In function 'ApplyProductUpdateTableBtn':
macrodlg.c:26278:15: warning: 'lip' may be used uninitialized in this function [-Wmaybe-uninitialized]
FreeLog (lip);
^
macrodlg.c: In function 'RemoveSequencesActionDialog':
macrodlg.c:6490:15: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
dlg->dialog = (DialoG) p;
^
macrodlg.c: In function 'ActionToSingleMacroActionForm':
macrodlg.c:21322:25: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int2 val, i;
^
macrodlg.c: In function 'BuildEditMacroActionWindow':
macrodlg.c:15004:16: warning: 'indexer_only_group' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) dlg->feature_type_dlg,
^
macrodlg.c:14910:47: note: 'indexer_only_group' was declared here
GrouP p, g, parts_group, x, indexer_only_group;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF biosrc.c
biosrc.c: In function 'CreateBioSourceDialog':
biosrc.c:3506:18: warning: variable 'y' set but not used [-Wunused-but-set-variable]
PrompT y;
^
biosrc.c: At top level:
biosrc.c:2459:13: warning: 'OrgModPtrToOrgmodDialog' defined but not used [-Wunused-function]
static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
^
biosrc.c:2508:16: warning: 'OrgmodDialogToOrgModPtr' defined but not used [-Wunused-function]
static Pointer OrgmodDialogToOrgModPtr (DialoG d)
^
biosrc.c:2568:13: warning: 'SubSourcePtrToSubsourceDialog' defined but not used [-Wunused-function]
static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
^
biosrc.c:2991:16: warning: 'SubsourceDialogToSubSourcePtr' defined but not used [-Wunused-function]
static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
^
biosrc.c:3182:26: warning: 'EnumListFromQualNameAssoc' defined but not used [-Wunused-function]
static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cdrgn.c
cdrgn.c: In function 'ProductToSeqLocPtr':
cdrgn.c:1318:19: warning: variable 'rfp' set but not used [-Wunused-but-set-variable]
RnaFormPtr rfp = NULL;
^
cdrgn.c: In function 'CreateCodeBreakAlist':
cdrgn.c:1951:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
cdrgn.c: In function 'CodeBreakPtrToCodeBreakDialog':
cdrgn.c:2002:19: warning: variable 'aa' set but not used [-Wunused-but-set-variable]
Uint1 aa;
^
cdrgn.c: In function 'PopulateAAPopup':
cdrgn.c:7044:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
cdrgn.c: At top level:
cdrgn.c:2174:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
static Int4 AccessionToGi (CharPtr string)
^
cdrgn.c:6253:14: warning: 'check_rna_type' defined but not used [-Wunused-function]
static Uint1 check_rna_type (Uint1 type)
^
cdrgn.c:6330:15: warning: 'CreateMrnaUserObjectDialog' defined but not used [-Wunused-function]
static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
^
cdrgn.c:6773:18: warning: 'FindOrAddQual' defined but not used [-Wunused-function]
static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
^
cdrgn.c:6792:13: warning: 'RemoveQualByName' defined but not used [-Wunused-function]
static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
^
cdrgn.c:6854:13: warning: 'ConvertRnaRefNameToProductQual' defined but not used [-Wunused-function]
static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF import.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pubdesc.c
pubdesc.c: In function 'SetPubdescImportExportItems':
pubdesc.c:2859:37: warning: comparison between pointer and integer [enabled by default]
&&& pfp->currentPage == 1) {
^
pubdesc.c: In function 'MakeReplaceAuthorsForm':
pubdesc.c:4289:24: warning: variable 'pepp' set but not used [-Wunused-but-set-variable]
PubdescEditProcsPtr pepp;
^
pubdesc.c: In function 'DisplayDocSum':
pubdesc.c:4851:9: warning: variable 'lineheight' set but not used [-Wunused-but-set-variable]
Int2 lineheight;
^
pubdesc.c: At top level:
pubdesc.c:5363:13: warning: 'Quit' defined but not used [-Wunused-function]
static void Quit (ButtoN b)
^
pubdesc.c:5099:14: warning: 'AddAll' defined but not used [-Wunused-function]
static void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqsub.c
seqsub.c: In function 'SeqSubmitFromTemplateEditor':
seqsub.c:3250:20: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
ObjMgrDataPtr omdp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mapgene.c
mapgene.c: In function 'load_new_align':
mapgene.c:79:17: warning: variable 'match_slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp, match_slp, t_slp;
^
mapgene.c: In function 'figure_loc_by_position':
mapgene.c:1039:20: warning: variable 'center' set but not used [-Wunused-but-set-variable]
Int4 start, stop, center;
^
mapgene.c: In function 'cvt_loc_for_single_gene':
mapgene.c:1958:29: warning: variable 'p_align_offset' set but not used [-Wunused-but-set-variable]
Int4 offset, align_offset, p_align_offset;
^
mapgene.c:1957:7: warning: unused variable 'shift' [-Wunused-variable]
Int4 shift = 0;
^
mapgene.c: In function 'print_header_for_center':
mapgene.c:2693:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
CharPtr link;
^
mapgene.c: In function 'PrintGeneticMarkerForOneMap':
mapgene.c:3635:10: warning: variable 'link' set but not used [-Wunused-but-set-variable]
CharPtr link;
^
mapgene.c: At top level:
mapgene.c:27:13: warning: 'print_this_id' defined but not used [-Wunused-function]
static void print_this_id (SeqIdPtr sip)
^
mapgene.c:200:13: warning: 'get_center_pointer' defined but not used [-Wunused-function]
static Int4 get_center_pointer(SeqLocPtr slp)
^
mapgene.c:1280:13: warning: 'change_anchor_to_front' defined but not used [-Wunused-function]
static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
^
mapgene.c:1748:16: warning: 'merge_slp_list' defined but not used [-Wunused-function]
static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
^
mapgene.c:1788:13: warning: 'adjust_slp_list' defined but not used [-Wunused-function]
static void adjust_slp_list(ValNodePtr slp_list)
^
mapgene.c:3207:16: warning: 'convert_center_name_to_gifname' defined but not used [-Wunused-function]
static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
^
mapgene.c: In function 'PrintContigForOneMap':
mapgene.c:3126:2: warning: 'yac_num' may be used uninitialized in this function [-Wmaybe-uninitialized]
for(i = 0; i<num; ++i)
^
mapgene.c:3152:7: note: 'yac_num' was declared here
Int4 yac_num;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prtgene.c
prtgene.c: In function 'print_store_for_html':
prtgene.c:749:7: warning: variable 'white_sp' set but not used [-Wunused-but-set-variable]
Char white_sp;
^
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvclick.c
ddvclick.c: In function 'DDV_SendBSPSelectMsg_OLD':
ddvclick.c:979:13: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
ddvclick.c: In function 'DDV_SendBSPSelectMsg':
ddvclick.c:1090:18: warning: variable 'bDeselectAll' set but not used [-Wunused-but-set-variable]
Boolean bDeselectAll=TRUE;
^
ddvclick.c: In function 'DDV_DragProc':
ddvclick.c:2013:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ParaGPtr cur_pgp=NULL;
^
ddvclick.c: In function 'DDV_HoldProc':
ddvclick.c:2494:13: warning: unused variable 'Scroll' [-Wunused-variable]
Boolean Scroll=FALSE;
^
ddvclick.c:2490:13: warning: unused variable 'cur_pgp' [-Wunused-variable]
ParaGPtr cur_pgp=NULL;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvclick.c:1823:13: warning: 'EraseOutline' defined but not used [-Wunused-function]
static void EraseOutline(PaneL p) {
^
ddvclick.c:1811:16: warning: 'RectanglesAreSame' defined but not used [-Wunused-function]
static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
^
ddvclick.c:611:13: warning: 'DDV_GetSeqAlignCoordGivenCol' defined but not used [-Wunused-function]
static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
^
ddvclick.c:970:13: warning: 'DDV_SendBSPSelectMsg_OLD' defined but not used [-Wunused-function]
static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
^
ddvclick.c: In function 'DDV_GetSeqNameGivenRow':
ddvclick.c:956:6: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (!sip)
^
ddvclick.c: In function 'DDV_ReleaseProc':
ddvclick.c:1127:7: warning: 'bsp_coord_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1085:18: note: 'bsp_coord_start' was declared here
Int4 bsp_coord_start, bsp_coord_stop, ParaGLine_Num, col;
^
ddvclick.c:1127:22: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1091:18: note: 'pgp' was declared here
ParaGPtr pgp;
^
ddvclick.c:1127:7: warning: 'bsp_coord_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
^
ddvclick.c:1085:35: note: 'bsp_coord_stop' was declared here
Int4 bsp_coord_start, bsp_coord_stop, ParaGLine_Num, col;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
ddvgraph.c: In function 'DDV_DrawSequence':
ddvgraph.c:701:31: warning: unused variable 'pos' [-Wunused-variable]
Int2 decal=1,i,x,y,pos=0;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvopen.c
ddvopen.c: In function 'DDV_GetAndCheckSeqAlign':
ddvopen.c:1739:8: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
Uint2 nRet=DVV_MSG_M_OK;
^
ddvopen.c: In function 'DDV_FOpenAcceptProc':
ddvopen.c:1932:11: warning: variable 'nRet' set but not used [-Wunused-but-set-variable]
Uint2 nRet=DVV_MSG_M_OK,The_entityID;
^
ddvopen.c: In function 'DDV_NetOpen_okProc':
ddvopen.c:2141:8: warning: variable 'AccessType' set but not used [-Wunused-but-set-variable]
Int2 AccessType,procval;
^
ddvopen.c: In function 'DDV_ImportBioseqDlg':
ddvopen.c:2819:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
ddvopen.c: In function 'DDV_HideDlg':
ddvopen.c:3135:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvopen.c:1272:13: warning: 'DDV_Convert' defined but not used [-Wunused-function]
static void DDV_Convert(ButtoN g) {
^
ddvopen.c:1285:13: warning: 'DDV_NoConvert' defined but not used [-Wunused-function]
static void DDV_NoConvert(ButtoN g) {
^
ddvopen.c:2111:16: warning: 'DDV_IsInt' defined but not used [-Wunused-function]
static Boolean DDV_IsInt(CharPtr szAccess)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
ddvpanel.c: In function 'DDV_CreateViewerPanel':
ddvpanel.c:1177:8: warning: variable 'cxChar' set but not used [-Wunused-but-set-variable]
Int2 cxChar,cyChar;
^
ddvpanel.c: In function 'DDV_DispStyles_OkProc':
ddvpanel.c:1543:21: warning: unused variable 'szBuf' [-Wunused-variable]
Char szBuf[15]={""};
^
ddvpanel.c: In function 'DDV_ExportTexte':
ddvpanel.c:2799:40: warning: variable 'browse' set but not used [-Wunused-but-set-variable]
ButtoN chk2,chk3,chk4,chk5,chk6,browse,ok;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/ddvopen.h:140,
from ../include/ddvmain.h:202,
from ../include/ddvpanel.h:150,
from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
ddvpanel.c:3024:13: warning: 'DDV_DeleteRow' defined but not used [-Wunused-function]
static void DDV_DeleteRow(IteM i)
^
ddvpanel.c:3266:13: warning: 'DDV_MoveRowLeft' defined but not used [-Wunused-function]
static void DDV_MoveRowLeft(IteM i)
^
ddvpanel.c:3272:13: warning: 'DDV_MoveRowRight' defined but not used [-Wunused-function]
static void DDV_MoveRowRight(IteM i)
^
ddvpanel.c:3278:13: warning: 'DDV_MoveLeftBoundaryLeft' defined but not used [-Wunused-function]
static void DDV_MoveLeftBoundaryLeft(IteM i)
^
ddvpanel.c:3284:13: warning: 'DDV_MoveLeftBoundaryRight' defined but not used [-Wunused-function]
static void DDV_MoveLeftBoundaryRight(IteM i)
^
ddvpanel.c:3290:13: warning: 'DDV_MoveRightBoundaryLeft' defined but not used [-Wunused-function]
static void DDV_MoveRightBoundaryLeft(IteM i)
^
ddvpanel.c:3296:13: warning: 'DDV_MoveRightBoundaryRight' defined but not used [-Wunused-function]
static void DDV_MoveRightBoundaryRight(IteM i)
^
ddvpanel.c:3377:13: warning: 'write_annot' defined but not used [-Wunused-function]
static void write_annot(SeqAlignPtr align)
^
ddvpanel.c: In function 'DDVExportTexteOkProc':
ddvpanel.c:2647:27: warning: 'bPrintGap' may be used uninitialized in this function [-Wmaybe-uninitialized]
DDV_DumpSAPInFastaFile(&(dmp->MSA_d.pgp_l),&dob, hFile,bPrintGap);
^
ddvpanel.c: In function 'DDV_SortPGPLineNum':
ddvpanel.c:2441:9: warning: 'pgp' may be used uninitialized in this function [-Wmaybe-uninitialized]
n+=pgp->nLines;
^
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF corematx.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dvncode.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
objmmdb1.c: In function 'BiostrucAsnRead':
objmmdb1.c:90:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucIdFree':
objmmdb1.c:323:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucIdAsnRead':
objmmdb1.c:358:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucSetAsnRead':
objmmdb1.c:547:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucAnnotSetAsnRead':
objmmdb1.c:716:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucResidueGraphSetAsnRead':
objmmdb1.c:885:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiostrucDescrFree':
objmmdb1.c:1015:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucHistoryAsnRead':
objmmdb1.c:1270:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:1269:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucReplaceAsnRead':
objmmdb1.c:1450:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:1449:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseFree':
objmmdb1.c:1618:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiostrucSourceAsnRead':
objmmdb1.c:1652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'VersionOfDatabase_version_of_databaseAsnRead':
objmmdb1.c:1753:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucGraphAsnRead':
objmmdb1.c:2000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'BiomolDescrFree':
objmmdb1.c:2138:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2188:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueGraphAsnRead':
objmmdb1.c:2445:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'MoleculeGraphAsnRead':
objmmdb1.c:2652:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'InterResidueBondAsnRead':
objmmdb1.c:2853:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:2852:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueAsnRead':
objmmdb1.c:3033:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3032:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ResidueGraphPntrFree':
objmmdb1.c:3172:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb1.c: In function 'ResidueGraphPntrAsnRead':
objmmdb1.c:3207:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucGraphPntrAsnRead':
objmmdb1.c:3394:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3393:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'BiostrucResidueGraphSetPntrAsnRead':
objmmdb1.c:3559:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3558:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomAsnRead':
objmmdb1.c:3725:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c: In function 'IntraResidueBondAsnRead':
objmmdb1.c:3916:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:3915:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'ChiralCenterAsnRead':
objmmdb1.c:4088:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:4087:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomPntrAsnRead':
objmmdb1.c:4276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb1.c:4275:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb1.c: In function 'AtomPntrSetAsnRead':
objmmdb1.c:4430:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:73:0,
from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objmmdb1.c: In function 'BiostrucDescrAsnRead':
objmmdb1.c:1126:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb1.c: In function 'BiomolDescrAsnRead':
objmmdb1.c:2283:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
objmmdb2.c: In function 'BiostrucModelAsnRead':
objmmdb2.c:88:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ModelDescrFree':
objmmdb2.c:241:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:288:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'ModelSpaceAsnRead':
objmmdb2.c:511:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:510:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'Coordinates_coordinatesFree':
objmmdb2.c:707:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:741:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'Coordinates_coordinatesAsnRead':
objmmdb2.c:829:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'ReferenceFrameAsnRead':
objmmdb2.c:1060:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:1059:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'CoordinatesFree':
objmmdb2.c:1190:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1228:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'AtomicCoordinatesAsnRead':
objmmdb2.c:1417:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'Surface_surfaceFree':
objmmdb2.c:1636:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1682:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c:1681:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'Surface_surfaceAsnRead':
objmmdb2.c:1762:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'DensityCoordinatesAsnRead':
objmmdb2.c:2026:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ModelSpacePointsAsnRead':
objmmdb2.c:2258:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsFree':
objmmdb2.c:2398:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2433:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmmdb2.c: In function 'AtomicOccupanciesAsnRead':
objmmdb2.c:2609:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AlternateConformationIdsAsnRead':
objmmdb2.c:2753:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'ConformationEnsembleAsnRead':
objmmdb2.c:2883:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'IsotropicTemperatureFactorsAsnRead':
objmmdb2.c:3046:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'AnisotropicTemperatureFactorsAsnRead':
objmmdb2.c:3212:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'TMeshAsnRead':
objmmdb2.c:3416:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb2.c: In function 'TrianglesAsnRead':
objmmdb2.c:3615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objmmdb2.c: In function 'ModelDescrAsnRead':
objmmdb2.c:365:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'CoordinatesAsnRead':
objmmdb2.c:1278:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'AtomicTemperatureFactorsAsnRead':
objmmdb2.c:2479:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c: In function 'ModelCoordinateSetAsnRead':
objmmdb2.c:875:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c:828:10: note: 'choice' was declared here
Uint1 choice;
^
objmmdb2.c: In function 'SurfaceCoordinatesAsnRead':
objmmdb2.c:1824:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb2.c:1761:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
objmmdb3.c: In function 'BiostrucFeatureSetAsnRead':
objmmdb3.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphPntrsFree':
objmmdb3.c:219:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'AtomPntrsAsnRead':
objmmdb3.c:442:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphAlignmentAsnRead':
objmmdb3.c:624:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ChemGraphInteractionAsnRead':
objmmdb3.c:821:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'SphereAsnRead':
objmmdb3.c:1020:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ConeAsnRead':
objmmdb3.c:1188:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'CylinderAsnRead':
objmmdb3.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BrickAsnRead':
objmmdb3.c:1553:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'TransformAsnRead':
objmmdb3.c:1792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucFeatureSetDescrFree':
objmmdb3.c:1916:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'Location_locationFree':
objmmdb3.c:2156:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2201:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'Property_propertyFree':
objmmdb3.c:2716:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'ColorPropAsnRead':
objmmdb3.c:2792:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'CameraAsnRead':
objmmdb3.c:2979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucScriptAsnRead':
objmmdb3.c:3163:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3322:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionSimilarityAsnRead':
objmmdb3.c:3639:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'OtherFeatureAsnRead':
objmmdb3.c:3815:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucMoleculePntrAsnRead':
objmmdb3.c:3988:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'MoleculePntrsAsnRead':
objmmdb3.c:4330:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ResidueExplicitPntrsAsnRead':
objmmdb3.c:4492:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ResidueIntervalPntrAsnRead':
objmmdb3.c:4659:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionCoordinatesAsnRead':
objmmdb3.c:4830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RegionBoundaryFree':
objmmdb3.c:4965:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'AlignStatsAsnRead':
objmmdb3.c:5196:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'RealValueAsnRead':
objmmdb3.c:5437:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'ModelSpacePointAsnRead':
objmmdb3.c:5597:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'MoveFree':
objmmdb3.c:5740:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmmdb3.c: In function 'RotMatrixAsnRead':
objmmdb3.c:5948:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'TransMatrixAsnRead':
objmmdb3.c:6180:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'GLMatrixAsnRead':
objmmdb3.c:6358:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmmdb3.c: In function 'BiostrucScriptStepAsnRead':
objmmdb3.c:6658:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/strimprt.h:72:0,
from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
objmmdb3.c: In function 'ChemGraphPntrsAsnRead':
objmmdb3.c:306:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'BiostrucFeatureSetDescrAsnRead':
objmmdb3.c:2019:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'RegionBoundaryAsnRead':
objmmdb3.c:5059:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'MoveAsnRead':
objmmdb3.c:5820:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c: In function 'RegionPntrsAsnRead':
objmmdb3.c:3456:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c:3401:10: note: 'choice' was declared here
Uint1 choice;
^
objmmdb3.c: In function 'BiostrucFeatureAsnRead':
objmmdb3.c:2365:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmmdb3.c:2303:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objcn3d.c
objcn3d.c: In function 'Cn3dStyleDictionaryAsnRead':
objcn3d.c:87:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dUserAnnotationsAsnRead':
objcn3d.c:251:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dColorAsnRead':
objcn3d.c:415:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:414:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dBackboneStyleAsnRead':
objcn3d.c:604:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:603:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dGeneralStyleAsnRead':
objcn3d.c:787:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:786:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dBackboneLabelStyleAsnRead':
objcn3d.c:969:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:968:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dStyleSettingsAsnRead':
objcn3d.c:1171:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1170:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dStyleSettingsSetAsnRead':
objcn3d.c:1573:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dStyleTableItemAsnRead':
objcn3d.c:1702:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1701:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dResidueRangeAsnRead':
objcn3d.c:1866:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:1865:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dMoleculeLocationAsnRead':
objcn3d.c:2028:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dObjectLocationAsnRead':
objcn3d.c:2190:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dUserAnnotationAsnRead':
objcn3d.c:2355:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c: In function 'Cn3dGLMatrixAsnRead':
objcn3d.c:2546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:2545:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dVectorAsnRead':
objcn3d.c:2833:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:2832:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcn3d.c: In function 'Cn3dViewSettingsAsnRead':
objcn3d.c:3005:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcn3d.c:3004:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from ../include/mapcn3d.h:8:0,
from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/mapcn3d.h:8:0,
from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
mmdbapi.c: In function 'MakeAModelstruc':
mmdbapi.c:192:11: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
mmdbapi.c:189:11: warning: unused variable 'pdnmsCount' [-Wunused-variable]
PDNMS pdnmsCount = NULL;
^
mmdbapi.c: In function 'AddPFBSelect':
mmdbapi.c:532:11: warning: unused variable 'pmsdStruc' [-Wunused-variable]
PMSD pmsdStruc = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
mmdbapi1.c: In function 'FreeAtomicModelAsnLists':
mmdbapi1.c:1037:21: warning: unused variable 'pcoThis' [-Wunused-variable]
CoordinatesPtr pcoThis = NULL;
^
mmdbapi1.c: In function 'FetchBS':
mmdbapi1.c:1242:13: warning: unused variable 'bIsNetwork' [-Wunused-variable]
Boolean bIsNetwork = FALSE;
^
mmdbapi1.c: In function 'FreeSurfaceModelAsnList':
mmdbapi1.c:1627:16: warning: variable 'pvnX' set but not used [-Wunused-but-set-variable]
ValNodePtr pvnX = NULL;
^
mmdbapi1.c: In function 'MakeChemGraphNodeList':
mmdbapi1.c:2343:16: warning: variable 'pvnThis' set but not used [-Wunused-but-set-variable]
ValNodePtr pvnThis = NULL;
^
mmdbapi1.c: In function 'DoApplyTransform':
mmdbapi1.c:2573:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'DoReverseTransform':
mmdbapi1.c:2713:8: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2860:8: warning: unused variable 'psfsThis' [-Wunused-variable]
PSFS psfsThis = NULL;
^
mmdbapi1.c:2859:22: warning: unused variable 'pbsfThis' [-Wunused-variable]
BiostrucFeaturePtr pbsfThis = NULL;
^
mmdbapi1.c:2855:9: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:2978:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c:2967:22: warning: unused variable 'pbsf' [-Wunused-variable]
BiostrucFeaturePtr pbsf=NULL;
^
mmdbapi1.c: In function 'fnPBSFtoPSA':
mmdbapi1.c:3174:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3408:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi1.c:3397:22: warning: unused variable 'pbsf' [-Wunused-variable]
BiostrucFeaturePtr pbsf=NULL;
^
mmdbapi1.c: In function 'InstallAlignedSlave':
mmdbapi1.c:3877:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi1.c:3874:9: warning: unused variable 'psfsThis' [-Wunused-variable]
PSFS psfsThis = NULL;
^
mmdbapi1.c: In function 'BiostrucAddFeature':
mmdbapi1.c:4184:11: warning: variable 'ncbiVast' set but not used [-Wunused-but-set-variable]
Boolean ncbiVast = FALSE;
^
mmdbapi1.c:4182:11: warning: variable 'pdbFootnote' set but not used [-Wunused-but-set-variable]
Boolean pdbFootnote = FALSE;
^
mmdbapi1.c:4181:11: warning: variable 'pdbSite' set but not used [-Wunused-but-set-variable]
Boolean pdbSite = FALSE;
^
mmdbapi1.c:4172:15: warning: unused variable 'pdvnThis' [-Wunused-variable]
DValNodePtr pdvnThis = NULL;
^
mmdbapi1.c: In function 'BiostrucAsnGet':
mmdbapi1.c:5289:18: warning: variable 'aop' set but not used [-Wunused-but-set-variable]
AsnOptionPtr aop;
^
mmdbapi1.c: In function 'BiosToSeq':
mmdbapi1.c:3127:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
mmdbapi1.c: In function 'BiostrToSeqAnnotSet':
mmdbapi1.c:3559:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
mmdbapi1.c: In function 'InstBSAnnotSet':
mmdbapi1.c:2885:13: warning: 'iMMDBId' may be used uninitialized in this function [-Wmaybe-uninitialized]
pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
mmdbapi2.c: In function 'GetAtomLocs':
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (pmadThis)
^
mmdbapi2.c: In function 'AssignAtomLocId':
mmdbapi2.c:1537:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignBackBone':
mmdbapi2.c:1686:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignVirtual':
mmdbapi2.c:1790:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'AssignIons':
mmdbapi2.c:1846:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest = 0;
^
mmdbapi2.c: In function 'MolFromPDBChain':
mmdbapi2.c:1931:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi2.c: In function 'SeqStringFromMol':
mmdbapi2.c:1948:9: warning: unused variable 'iTest' [-Wunused-variable]
Int4 iTest =0;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
mmdbapi3.c: In function 'WritePDBHeader':
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(org)
^
mmdbapi3.c: In function 'WritePDBRemarks':
mmdbapi3.c:1389:8: warning: unused variable 'len' [-Wunused-variable]
int len;
^
mmdbapi3.c:1388:9: warning: unused variable 'pcThis' [-Wunused-variable]
Char pcThis[81];
^
mmdbapi3.c:1387:21: warning: unused variable 'pbsdrLast' [-Wunused-variable]
BiostrucDescrPtr pbsdrLast = NULL;
^
mmdbapi3.c:1386:21: warning: unused variable 'pbsdrThis' [-Wunused-variable]
BiostrucDescrPtr pbsdrThis = NULL;
^
mmdbapi3.c: In function 'WritePDBConnect':
mmdbapi3.c:1610:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
mmdbapi3.c: In function 'WritePDBModelList':
mmdbapi3.c:1625:10: warning: variable 'iCount' set but not used [-Wunused-but-set-variable]
Int4 iCount;
^
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2287:11: warning: unused variable 'pcElName' [-Wunused-variable]
CharPtr pcElName = NULL;
^
mmdbapi3.c: In function 'WriteFASTAMolecule':
mmdbapi3.c:3537:9: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int4 iTest =0;
^
mmdbapi3.c: In function 'WriteKinAtom':
mmdbapi3.c:2314:12: warning: 'iTemp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
mmdbapi4.c: In function 'RefreshSurface':
mmdbapi4.c:147:10: warning: unused variable 'iVal' [-Wunused-variable]
Int4 iVal = 0;
^
mmdbapi4.c: In function 'FreeCoordinatesAsnLists':
mmdbapi4.c:335:28: warning: variable 'pdcThis' set but not used [-Wunused-but-set-variable]
DensityCoordinatesPtr pdcThis = NULL;
^
mmdbapi4.c: In function 'FreeRedundantAsn':
mmdbapi4.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
mmdbapi4.c:370:11: warning: unused variable 'pdnmmThis' [-Wunused-variable]
PDNMM pdnmmThis = NULL;
^
mmdbapi4.c:367:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
BiostrucModelPtr pbsmThis = NULL;
^
mmdbapi4.c: In function 'RefreshModelAsnMem':
mmdbapi4.c:474:13: warning: unused variable 'iCoordSets' [-Wunused-variable]
Int4 iCoordSets = 0;
^
mmdbapi4.c:465:20: warning: unused variable 'pappThis' [-Wunused-variable]
AtomPntrsPtr pappThis = NULL;
^
mmdbapi4.c:464:27: warning: unused variable 'pmspThis' [-Wunused-variable]
ModelSpacePointsPtr pmspThis = NULL;
^
mmdbapi4.c:463:28: warning: unused variable 'pocThis' [-Wunused-variable]
AtomicOccupanciesPtr pocThis = NULL;
^
mmdbapi4.c:458:34: warning: unused variable 'paciThis' [-Wunused-variable]
AlternateConformationIdsPtr paciThis = NULL;
^
mmdbapi4.c: In function 'RebuildChemGraphAsn':
mmdbapi4.c:931:15: warning: unused variable 'bOK' [-Wunused-variable]
Boolean bOK = TRUE;
^
mmdbapi4.c: In function 'WriteASNChemGraphOnly':
mmdbapi4.c:1192:10: warning: unused variable 'iHash' [-Wunused-variable]
Int4 iHash = 0;
^
mmdbapi4.c: In function 'FreeSingleModel':
mmdbapi4.c:1336:11: warning: unused variable 'pdnml' [-Wunused-variable]
PDNML pdnml = NULL;
^
mmdbapi4.c:1332:22: warning: unused variable 'pbsmTemp' [-Wunused-variable]
BiostrucModelPtr pbsmTemp = NULL;
^
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1505:14: warning: unused variable 'paioAIP' [-Wunused-variable]
AsnIoPtr paioAIP = NULL;
^
mmdbapi4.c:1502:11: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
mmdbapi4.c:1498:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
mmdbapi4.c:1496:22: warning: unused variable 'pbsmThis' [-Wunused-variable]
BiostrucModelPtr pbsmThis = NULL;
^
mmdbapi4.c:1495:17: warning: unused variable 'pBSThis' [-Wunused-variable]
BiostrucPtr pBSThis = NULL;
^
mmdbapi4.c:1494:13: warning: unused variable 'bFirst' [-Wunused-variable]
Boolean bFirst = TRUE;
^
mmdbapi4.c:1493:10: warning: unused variable 'iTest' [-Wunused-variable]
Int2 iTest = 0;
^
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1741:19: warning: unused variable 'loc1' [-Wunused-variable]
ValNodePtr loc1 = NULL;
^
mmdbapi4.c: In function 'WriteAsnModelList':
mmdbapi4.c:1503:13: warning: 'bRet' may be used uninitialized in this function [-Wmaybe-uninitialized]
Boolean bRet;
^
mmdbapi4.c: In function 'BiostrucAnnotSetToSeqAnnot':
mmdbapi4.c:1872:20: warning: 'slavesip' may be used uninitialized in this function [-Wmaybe-uninitialized]
dsp->ids->next = slavesip;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function 'LoadSubsetTable':
vastsubs.c:202:16: warning: 'len' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 i, j, n, len, strindex, ndoms, nsubs;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF prunebsc.c
prunebsc.c: In function 'PruneFeatureSet':
prunebsc.c:220:22: warning: variable 'bsfpDie' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
^
prunebsc.c: In function 'PruneModel':
prunebsc.c:272:30: warning: variable 'mcsDie' set but not used [-Wunused-but-set-variable]
ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
^
prunebsc.c: In function 'PruneBiostruc':
prunebsc.c:559:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
^
prunebsc.c:574:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
^
prunebsc.c:663:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
^
prunebsc.c:666:21: warning: 'feature_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((!StringICmp("NCBI assigned secondary structure", feature_name)) ||
^
prunebsc.c:649:23: warning: 'pirbnew' may be used uninitialized in this function [-Wmaybe-uninitialized]
pirbnew->next = pirb;
^
prunebsc.c:591:26: warning: 'currenthet' may be used uninitialized in this function [-Wmaybe-uninitialized]
currenthet->next = het;
^
prunebsc.c:701:34: warning: 'mol_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
bsmpTail->next = PruneModel(bsmp, pvnIds, mol_id);
^
prunebsc.c:562:16: warning: 'chnid' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (*chnid == *chain)
^
prunebsc.c:182:7: warning: 'mtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
switch(mtype)
^
prunebsc.c:173:8: note: 'mtype' was declared here
Int4 mtype, molecule_id;
^
prunebsc.c:204:25: warning: 'currenthet' may be used uninitialized in this function [-Wmaybe-uninitialized]
currenthet->next = newhet;
^
prunebsc.c:171:47: note: 'currenthet' was declared here
MoleculeGraphPtr newhet = NULL, het = NULL, currenthet;
^
prunebsc.c:110:7: warning: 'mtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
switch(mtype)
^
prunebsc.c:102:8: note: 'mtype' was declared here
Int4 mtype;
^
prunebsc.c:127:25: warning: 'currentbp' may be used uninitialized in this function [-Wmaybe-uninitialized]
currentbp->next = newbp;
^
prunebsc.c:100:38: note: 'currentbp' was declared here
MoleculeGraphPtr newbp, bp = NULL, currentbp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objcdd.c
objcdd.c: In function 'CddIdFree':
objcdd.c:53:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'CddIdAsnRead':
objcdd.c:85:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddIdSetAsnRead':
objcdd.c:248:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:245:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddIdSetAsnWrite':
objcdd.c:301:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddAsnRead':
objcdd.c:401:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddSetAsnRead':
objcdd.c:796:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:793:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddSetAsnWrite':
objcdd.c:849:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddTreeAsnRead':
objcdd.c:932:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:931:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddTreeSetAsnRead':
objcdd.c:1143:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1140:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddTreeSetAsnWrite':
objcdd.c:1196:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodesAsnRead':
objcdd.c:1276:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1275:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddPrefNodesAsnWrite':
objcdd.c:1365:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddProjectAsnRead':
objcdd.c:1472:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddOrgRefAsnRead':
objcdd.c:1661:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1660:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddOrgRefSetAsnRead':
objcdd.c:1830:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:1827:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddOrgRefSetAsnWrite':
objcdd.c:1883:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodeDescrFree':
objcdd.c:1923:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'CddPrefNodeDescrAsnRead':
objcdd.c:1958:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddPrefNodeDescrSetAsnRead':
objcdd.c:2121:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2118:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddPrefNodeDescrSetAsnWrite':
objcdd.c:2174:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'GlobalIdAsnRead':
objcdd.c:2253:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2252:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddRepeatAsnRead':
objcdd.c:2439:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2438:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddBookRefAsnRead':
objcdd.c:2615:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:2614:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddDescrSetAsnRead':
objcdd.c:3170:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:3167:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'CddDescrSetAsnWrite':
objcdd.c:3223:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'MatrixAsnRead':
objcdd.c:3301:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'TriangleAsnRead':
objcdd.c:3489:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'UpdateCommentFree':
objcdd.c:3625:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'UpdateCommentAsnRead':
objcdd.c:3669:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'UpdateAlignAsnRead':
objcdd.c:3873:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'RejectIdAsnRead':
objcdd.c:4047:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'RejectIdAsnWrite':
objcdd.c:4122:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'FeatureEvidenceFree':
objcdd.c:4170:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objcdd.c: In function 'FeatureEvidenceAsnRead':
objcdd.c:4214:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'AlignAnnotAsnRead':
objcdd.c:4419:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'AlignAnnotSetAsnRead':
objcdd.c:4587:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4584:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'AlignAnnotSetAsnWrite':
objcdd.c:4640:12: warning: unused variable 'av' [-Wunused-variable]
DataVal av;
^
objcdd.c: In function 'DomainParentAsnRead':
objcdd.c:4718:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4717:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'SequenceTreeAsnRead':
objcdd.c:4898:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:4897:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'AlgorithmTypeAsnRead':
objcdd.c:5085:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5084:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'SeqTreeNodeAsnRead':
objcdd.c:5387:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5386:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'Children_footprintAsnRead':
objcdd.c:5572:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5571:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'NodeAnnotationAsnRead':
objcdd.c:5862:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:5861:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddViewerRectAsnRead':
objcdd.c:6027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:6026:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objcdd.c: In function 'CddViewerAsnRead':
objcdd.c:6208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c: In function 'CddScriptAsnRead':
objcdd.c:6382:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objcdd.c:6381:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
In file included from objcdd.c:6:0:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from objcdd.c:6:0:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from objcdd.c:7:0:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
objcdd.c: In function 'CddDescrAsnRead':
objcdd.c:2994:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cddutil.c
cddutil.c: In function 'CddGetPmIds':
cddutil.c:649:17: warning: unused variable 'bRefOpen' [-Wunused-variable]
Boolean bRefOpen = FALSE;
^
cddutil.c: In function 'CddGetAnnotNames':
cddutil.c:807:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp, vnpHead = NULL;
^
cddutil.c: In function 'CddCheckForRepeats':
cddutil.c:1034:7: warning: the address of 'CddHasConsensus' will always evaluate as 'true' [-Waddress]
if (!CddHasConsensus) return FALSE;
^
cddutil.c:1013:23: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddMSLDenDiagToMSLDenSeg':
cddutil.c:1663:30: warning: variable 'lasts' set but not used [-Wunused-but-set-variable]
Int4 lastm, lasts;
^
cddutil.c:1663:23: warning: variable 'lastm' set but not used [-Wunused-but-set-variable]
Int4 lastm, lasts;
^
cddutil.c: In function 'SeqAlignInform':
cddutil.c:1938:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddAlignInform':
cddutil.c:2125:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddPssmInform':
cddutil.c:2248:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddPosFreqInform':
cddutil.c:2306:22: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddDenDiagCposComputation':
cddutil.c:2368:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c:2365:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddCposComputation':
cddutil.c:2571:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c:2568:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddRetrieveBioseqById':
cddutil.c:3379:15: warning: unused variable 'retcode' [-Wunused-variable]
Int2 retcode = 1;
^
cddutil.c:3377:15: warning: unused variable 'uid' [-Wunused-variable]
Int4 uid = 0;
^
cddutil.c: In function 'CddConsensus':
cddutil.c:3853:49: warning: variable 'm_end' set but not used [-Wunused-but-set-variable]
Int4 m_last, m_frst, s_insert, m_end;
^
cddutil.c: In function 'CddCposCompPart1':
cddutil.c:4247:25: warning: variable 'iStatus' set but not used [-Wunused-but-set-variable]
Int2 iStatus;
^
cddutil.c: In function 'CddGetNewIndexForThreading':
cddutil.c:4392:14: warning: unused variable 'Index' [-Wunused-variable]
Int4 i, Index=0;
^
cddutil.c: In function 'CddCposComp':
cddutil.c:4474:33: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr newRow, RowHead;
^
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4745:59: warning: variable 'RowHead' set but not used [-Wunused-but-set-variable]
ValNodePtr ColumnHead, LetterHead, newRow, RowHead, newLetter;
^
cddutil.c: In function 'CddDumpTaxLinks':
cddutil.c:5727:16: warning: unused variable 'txid' [-Wunused-variable]
Int4 txid = 0, gi = 0;
^
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
/*---------------------------------------------------------------------------*/
^
In file included from cddutil.c:349:0:
../include/cdd.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "cdd.h24";
^
../include/cdd.h:341:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/cdd.h:342:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/cdd.h:343:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/cddutil.h:205:0,
from cddutil.c:353:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
cddutil.c:4661:16: warning: 'CddtakeMatrixCheckpoint' defined but not used [-Wunused-function]
static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
^
In file included from cddutil.c:353:0:
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location);
^
cddutil.c: In function 'CddBioseqCopy':
cddutil.c:1362:21: warning: 'head' may be used uninitialized in this function [-Wmaybe-uninitialized]
newbsp->seq_ext = (Pointer)head;
^
cddutil.c: In function 'CddCopyMSLDenDiag':
cddutil.c:3015:25: warning: 'ddpTail' may be used uninitialized in this function [-Wmaybe-uninitialized]
ddpTail->next = ddpNew;
^
cddutil.c: In function 'CddCalculateTriangle':
cddutil.c:3535:24: warning: 'buffer1' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (buffer1) MemFree(buffer1);
^
cddutil.c:3524:22: warning: 'pscTail' may be used uninitialized in this function [-Wmaybe-uninitialized]
pscTail->next = psc; pscTail = psc; psc = NULL;
^
cddutil.c: In function 'CddDenDiagCposComp2KBP':
cddutil.c:4764:27: warning: 'pssm' may be used uninitialized in this function [-Wmaybe-uninitialized]
Seq_Mtf* pssm;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cddposutil.c
cddposutil.c: In function 'CddfindThreshSequences':
cddposutil.c:359:15: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */
^
cddposutil.c: In function 'CddfindDenseDiagThreshSequences':
cddposutil.c:386:16: warning: variable 'thisId' set but not used [-Wunused-but-set-variable]
SeqIdPtr thisId; /* Ids of target sequences in current SeqAlign */
^
cddposutil.c: In function 'CddposFreqsToMatrix':
cddposutil.c:1038:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4u)) + (sizetype)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
^
cddposutil.c: In function 'CddposDenseDiagDemographics':
cddposutil.c:1094:17: warning: unused variable 'is_new_id' [-Wunused-variable]
Boolean is_new_id = FALSE;
^
cddposutil.c:1093:17: warning: unused variable 'segIndex' [-Wunused-variable]
Int4 segIndex; /*Index for which piece we are at*/
^
cddposutil.c:1092:25: warning: variable 'startS' set but not used [-Wunused-but-set-variable]
Int4 startQ, startS; /*Indices into array of starting positions*/
^
cddposutil.c:1092:17: warning: variable 'startQ' set but not used [-Wunused-but-set-variable]
Int4 startQ, startS; /*Indices into array of starting positions*/
^
cddposutil.c:1091:17: warning: unused variable 'curId' [-Wunused-variable]
SeqIdPtr curId; /*Used to compare seq. coming from different SeqAligns*/
^
cddposutil.c: In function 'CddSetUpSearchInternalByLoc':
cddposutil.c:1246:39: warning: unused variable 'last_length_adjustment' [-Wunused-variable]
index, length, length_adjustment=0, last_length_adjustment, min_query_length;
^
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:2040:43: warning: variable 'final_db_seq' set but not used [-Wunused-but-set-variable]
Int4 final_virtual_db_seq=0, final_db_seq=0;
^
cddposutil.c:2006:28: warning: unused variable 'virtual_oid_bit' [-Wunused-variable]
Uint4 oid_bit, virtual_oid_bit;
^
cddposutil.c:2006:19: warning: unused variable 'oid_bit' [-Wunused-variable]
Uint4 oid_bit, virtual_oid_bit;
^
cddposutil.c:2005:30: warning: unused variable 'virtual_mask_index' [-Wunused-variable]
Int4 mask_index, virtual_mask_index;
^
cddposutil.c:2005:18: warning: unused variable 'mask_index' [-Wunused-variable]
Int4 mask_index, virtual_mask_index;
^
cddposutil.c:2004:19: warning: unused variable 'alias_oidlist' [-Wunused-variable]
OIDListPtr alias_oidlist;
^
cddposutil.c:2003:19: warning: unused variable 'use_private_gilist' [-Wunused-variable]
Boolean use_private_gilist = FALSE;
^
cddposutil.c:2000:20: warning: unused variable 'vnp' [-Wunused-variable]
ValNodePtr vnp;
^
cddposutil.c: In function 'CddposReadAlignment':
cddposutil.c:2226:16: warning: variable 'alignPos' set but not used [-Wunused-but-set-variable]
Int4 alignPos, queryOffset, subjectOffset, matchLength;
^
In file included from ../include/cddutil.h:205:0,
from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
In file included from cddposutil.c:131:0:
../include/cddutil.h:507:27: warning: 'CddReadBlastOptions' declared 'static' but never defined [-Wunused-function]
static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
^
../include/cddutil.h:512:13: warning: 'BlastKarlinBlkCopy' declared 'static' but never defined [-Wunused-function]
static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
^
../include/cddutil.h:516:13: warning: 'CddputMatrixKbp' declared 'static' but never defined [-Wunused-function]
static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
^
../include/cddutil.h:518:13: warning: 'CddputMatrixMatrix' declared 'static' but never defined [-Wunused-function]
static void CddputMatrixMatrix(FILE *checkFile,
^
../include/cddutil.h:522:16: warning: 'CddtakeMatrixCheckpoint' declared 'static' but never defined [-Wunused-function]
static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
^
../include/cddutil.h:589:25: warning: 'CddFindSeqIdInSeqLoc' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInSeqLoc(SeqLocPtr location);
^
../include/cddutil.h:591:25: warning: 'CddRelocateSeqLoc' declared 'static' but never defined [-Wunused-function]
static void CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
^
../include/cddutil.h:592:25: warning: 'CddSeqLocInExpAlign' declared 'static' but never defined [-Wunused-function]
static Int4 CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
^
../include/cddutil.h:593:25: warning: 'CddFindSeqIdInAlignAnnot' declared 'static' but never defined [-Wunused-function]
static SeqIdPtr CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
^
../include/cddutil.h:623:24: warning: 'HitYet' declared 'static' but never defined [-Wunused-function]
static Boolean HitYet(Int4Ptr retlist, Int4 index, Int4 i);
^
../include/cddutil.h:649:16: warning: 'CddFixForXML' declared 'static' but never defined [-Wunused-function]
static CharPtr CddFixForXML(CharPtr pc);
^
cddposutil.c:971:13: warning: 'CddfreePosFreqs' defined but not used [-Wunused-function]
static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
^
cddposutil.c: In function 'CddposComputeSequenceWeights':
cddposutil.c:840:35: warning: 'intervalSigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
posSearch->posSigma[qplace] = intervalSigma;
^
cddposutil.c:829:10: warning: 'Sigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Sigma > 0) {
^
cddposutil.c: In function 'CddposDemographics':
cddposutil.c:1199:24: warning: 'retrievalOffset' may be used uninitialized in this function [-Wmaybe-uninitialized]
subjectOffset = curSegs->starts[startS] - retrievalOffset;
^
cddposutil.c: In function 'CddSetUpSearchWithReadDb':
cddposutil.c:1740:48: warning: 'min_query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
^
cddposutil.c:1246:63: note: 'min_query_length' was declared here
index, length, length_adjustment=0, last_length_adjustment, min_query_length;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF objmime.c
objmime.c: In function 'NcbiMimeAsn1Free':
objmime.c:123:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:170:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'Data_dataFree':
objmime.c:377:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:423:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c:422:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'Data_dataAsnRead':
objmime.c:517:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'BiostrucAlignAsnRead':
objmime.c:791:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucAlignSeqAsnRead':
objmime.c:1016:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucSeqAsnRead':
objmime.c:1208:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'BiostrucSeqsAsnRead':
objmime.c:1402:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'SeqAlignData_seq_align_dataFree':
objmime.c:1599:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1633:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmime.c: In function 'SeqAlignData_seq_align_dataAsnRead':
objmime.c:1720:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmime.c: In function 'BundleSeqsAlignsAsnRead':
objmime.c:1954:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
In file included from ../include/mapmime.h:4:0,
from objmime.c:78:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/mapmime.h:4:0,
from objmime.c:78:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/mapmime.h:6:0,
from objmime.c:78:
../include/objcdd.h:642:37: warning: 'Children_childrenFree' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
^
../include/objcdd.h:643:37: warning: 'Children_childrenAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:644:24: warning: 'Children_childrenAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:666:38: warning: 'Children_footprintFree' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
^
../include/objcdd.h:667:38: warning: 'Children_footprintNew' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
^
../include/objcdd.h:668:38: warning: 'Children_footprintAsnRead' declared 'static' but never defined [-Wunused-function]
static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objcdd.h:669:24: warning: 'Children_footprintAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
^
objmime.c: In function 'NcbiMimeAsn1AsnRead':
objmime.c:232:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c: In function 'EntrezGeneralAsnRead':
objmime.c:579:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c:516:10: note: 'choice' was declared here
Uint1 choice;
^
objmime.c: In function 'BiostrucSeqsAlignsCddAsnRead':
objmime.c:1766:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmime.c:1719:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF strucapi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function 'atd':
thrdatd.c:201:8: warning: variable 'hh' set but not used [-Wunused-but-set-variable]
float hh;
^
thrdatd.c:198:6: warning: variable 'rf' set but not used [-Wunused-but-set-variable]
int rf; /* Reference position for a core element */
^
thrdatd.c:188:14: warning: unused variable 'm' [-Wunused-variable]
int i,j,k,l,m,n; /* Counters */
^
thrdatd.c:188:12: warning: unused variable 'l' [-Wunused-variable]
int i,j,k,l,m,n; /* Counters */
^
thrdatd.c:171:6: warning: variable 'nrp' set but not used [-Wunused-but-set-variable]
int nrp; /* Number of residue-peptide contacts in motif */
^
thrdatd.c:170:6: warning: variable 'nrr' set but not used [-Wunused-but-set-variable]
int nrr; /* Number of residue-residue contacts in motif */
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function 'bwfi':
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdbwfi.c:102:13: warning: 'nt' may be used uninitialized in this function [-Wmaybe-uninitialized]
ct=ttb->mx; for(i=0; i<=nt; i++) {
^
thrdbwfi.c:89:20: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized]
cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function 'cpal':
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function 'cpll':
thrdcpll.c:74:5: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types */
^
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdcpll.c:220:15: warning: 'r2' may be used uninitialized in this function [-Wmaybe-uninitialized]
cl->rf.t2[k]=r2;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function 'cprl':
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function 'cxei':
thrdcxei.c:94:15: warning: variable 'ms' set but not used [-Wunused-but-set-variable]
int ntot, ms;
^
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function 'g':
thrddgri.c:72:5: warning: variable 's0' set but not used [-Wunused-but-set-variable]
int s0;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function 'salu':
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function 'sgoi':
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdslor.c
thrdslor.c: In function 'slor':
thrdslor.c:90:6: warning: 'mp' may be used uninitialized in this function [-Wmaybe-uninitialized]
int *mp; /* Motif-derived loop length limits */
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function 'slou':
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdspci.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function 'spea':
thrdspea.c:91:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types in potential */
^
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function 'spel':
thrdspel.c:88:9: warning: variable 'nrt' set but not used [-Wunused-but-set-variable]
int nrt; /* Number of residue types in potential */
^
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function 'spni':
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function 'ttb0':
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function 'zsc':
thrdzsc.c:107:7: warning: unused variable 'gs' [-Wunused-variable]
int g,gs;
^
thrdzsc.c:102:18: warning: unused variable 'zsc' [-Wunused-variable]
float tg,tgp,tgm,zsc; /* Energy of shuffled sequence */
^
thrdzsc.c:95:5: warning: unused variable 'ps' [-Wunused-variable]
int ps,ms,cs,
^
thrdzsc.c:80:5: warning: unused variable 'temp' [-Wunused-variable]
int temp; /* Random index of the query sequence */
^
thrdzsc.c:79:2: warning: unused variable 'kk' [-Wunused-variable]
kk,itr,ii,jj; /* Counters */
^
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
thrdzsc.c:357:39: warning: 'tg_max' may be used uninitialized in this function [-Wmaybe-uninitialized]
ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
^
thrdzsc.c:89:6: warning: 'tls' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlf,tls,dln;
^
thrdzsc.c:89:2: warning: 'tlf' may be used uninitialized in this function [-Wmaybe-uninitialized]
tlf,tls,dln;
^
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF csim.c
csim.c: In function 'set_pam_200':
csim.c:165:2: warning: missing braces around initializer [-Wmissing-braces]
2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
^
csim.c:165:2: warning: (near initialization for 'wgts[0]') [-Wmissing-braces]
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
V[achars[i]][achars[j]]=10*(wgts[i][j]);
^
csim.c:196:8: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'set_pam_file':
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
V[alph[i]][alph[j]]=(Int2)(10*weight);
^
csim.c:228:12: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c: In function 'big_pass':
csim.c:668:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:692:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c: In function 'diff1':
csim.c:799:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[1]];
^
csim.c:805:13: warning: array subscript has type 'char' [-Wchar-subscripts]
{ c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
^
csim.c:849:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
^
csim.c:853:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:874:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i+1]];
^
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
^
csim.c:878:4: warning: array subscript has type 'char' [-Wchar-subscripts]
csim.c:893:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
^
csim.c: In function 'locate':
csim.c:974:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:991:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c:1030:8: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[(plist->m1)]];
^
csim.c:1043:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG((plist->m1), j, c, p+va[B[j]]) /* diagonal */
^
csim.c:1061:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1062:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1071:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1072:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1084:8: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[B[(plist->n1)]];
^
csim.c:1110:12: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, (plist->n1), c, p+va[A[i]])
^
csim.c:1128:38: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1129:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1138:34: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:1139:47: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| fi > rl && fj > cl ) )
^
csim.c:1144:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
^
csim.c: In function 'small_pass':
csim.c:1186:7: warning: array subscript has type 'char' [-Wchar-subscripts]
va = v[A[i]];
^
csim.c:1212:5: warning: array subscript has type 'char' [-Wchar-subscripts]
DIAG(i, j, c, p+va[B[j]]) /* diagonal */
^
csim.c: In function 'display':
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (i < M || j < N)
^
csim.c: In function 'SIM':
csim.c:1071:62: warning: 'dj' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:928:23: note: 'dj' was declared here
register Int4 di, dj; /* end-point associated with d */
^
csim.c:1071:51: warning: 'di' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
^
csim.c:928:19: note: 'di' was declared here
register Int4 di, dj; /* end-point associated with d */
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF db_slist.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dust.c
dust.c: In function 'slpDust.isra.0':
dust.c:655:23: warning: 'sintp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp->data.ptrvalue = (Pointer) sintp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_dust.c
blast_dust.c: In function 's_SlpDust':
blast_dust.c:348:23: warning: 'sintp' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp->data.ptrvalue = (Pointer) sintp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF falign.c
falign.c: In function 'fbld_table':
falign.c:490:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:494:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'bbld_table':
falign.c:517:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:521:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rcbld_table':
falign.c:544:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:548:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'ex_table':
falign.c:567:2: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'free_all':
falign.c:668:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = cdiag_prev[l]) {
^
falign.c: In function 'scan':
falign.c:688:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:694:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c:710:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+len2-1-pos]) {
^
falign.c:719:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df=diag_prev[l]) {
^
falign.c: In function 'fscan':
falign.c:763:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:769:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'bscan':
falign.c:794:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:800:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rfscan':
falign.c:870:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*++q];
^
falign.c:876:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c:881:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+se2-pos]) {
^
falign.c:889:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (df = diag_prev[len1+se2-pos]) {
^
falign.c: In function 'trcscan':
falign.c:1476:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*--q];
^
falign.c:1482:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*q];
^
falign.c: In function 'rclocal':
falign.c:1547:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = diag_prev[ocur_diag]) {
^
falign.c: In function 'enterS':
falign.c:1897:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (s = findS(f->bgf)) {
^
falign.c: In function 'local':
falign.c:1958:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = diag_prev[cur_diag]) {
^
falign.c: In function 'align':
falign.c:1999:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
falign.c: In function 'calign':
falign.c:2054:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
falign.c: In function 'malign':
falign.c:2109:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (pf = cdiag_prev[cur_diag]) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF g_any.c
g_any.c: In function 'k_align':
g_any.c:212:3: warning: array subscript has type 'char' [-Wchar-subscripts]
va = vv[A[i+1]];
^
g_any.c:229:4: warning: array subscript has type 'char' [-Wchar-subscripts]
if (j < J2) c = s + va[B[j+1]];
^
g_any.c:319:3: warning: array subscript has type 'char' [-Wchar-subscripts]
b2 = PP[t1][b1];
^
g_any.c:322:3: warning: array subscript has type 'char' [-Wchar-subscripts]
t2 = PT[t1][b1];
^
g_any.c: In function 'z_ALIGN':
g_any.c:367:7: warning: variable 'check_score' set but not used [-Wunused-but-set-variable]
Int4 check_score;
^
g_any.c: In function 'CHECK_SCORE':
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
score = vv[A[++i]][B[++j]] + score;
^
g_any.c:492:3: warning: array subscript has type 'char' [-Wchar-subscripts]
g_any.c: At top level:
g_any.c:428:13: warning: 'ALINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
g_any.c:428:24: warning: 'BLINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
g_any.c:428:35: warning: 'CLINE' defined but not used [-Wunused-variable]
static Char ALINE[51], BLINE[51], CLINE[51];
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function 'SIM2':
sim2.c:19:16: warning: unused variable 'compB' [-Wunused-variable]
CharPtr A, B, compB = NULL;
^
sim2.c:17:26: warning: unused variable 'sapC' [-Wunused-variable]
SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
^
sim2.c:135:20: warning: 's_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
Change_Loc_Strand(cslp2, s_strand);
^
sim2.c:136:20: warning: 'm_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
Change_Loc_Strand(cslp1, m_strand);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sim3.c
sim3.c: In function 'locate':
sim3.c:103:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:105:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:113:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:115:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:129:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = (ecode << 2) + encoding[*p++];
^
sim3.c:133:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c:152:3: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
^
sim3.c:155:17: warning: array subscript has type 'char' [-Wchar-subscripts]
ecode = ((ecode & mask) << 2) + encoding[*p++];
^
sim3.c: At top level:
sim3.c:806:13: warning: 'Print_Script' defined but not used [-Wunused-function]
static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
^
sim3.c:1048:13: warning: 'get_start_pos' defined but not used [-Wunused-function]
static Int4 get_start_pos(SeqLocPtr slp)
^
sim3.c:1056:13: warning: 'get_current_pos' defined but not used [-Wunused-function]
static Int4 get_current_pos(Int4Ptr pos, Int4 length)
^
sim3.c:1067:16: warning: 'is_end_seg' defined but not used [-Wunused-function]
static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sim4.c
sim4.c: In function 'sim4x':
sim4.c:630:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while(i1 = sgp->Blist[i].next) {
^
sim4.c: In function 'greedy':
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == 0 && col == 0)
^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == 0)
^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (col == 0)
^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == m && col == n)
^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (row == m)
^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (col == n)
^
sim4.c: In function 'DISPLAY':
sim4.c:2625:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if (a >= ALINE+50 || i >= M && j >= N)
^
sim4.c: At top level:
sim4.c:2563:13: warning: 'S2A' defined but not used [-Wunused-function]
static void S2A(EditScriptPtr head, Int4Ptr S)
^
sim4.c:2592:13: warning: 'DISPLAY' defined but not used [-Wunused-function]
static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
^
sim4.c:2499:13: warning: 'Print_Script' defined but not used [-Wunused-function]
static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
^
sim4.c: In function 'greedy.isra.12':
sim4.c:2112:37: warning: 'forth' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (m-min_row[back]>=max_row[forth]) {
^
sim4.c:2112:22: warning: 'back' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (m-min_row[back]>=max_row[forth]) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF simutil.c
simutil.c: In function 'make_align':
simutil.c:495:9: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
simutil.c: At top level:
simutil.c:344:17: warning: 'convert' defined but not used [-Wunused-function]
static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
^
simutil.c:814:16: warning: 're_cal_score' defined but not used [-Wunused-function]
static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
^
simutil.c:848:16: warning: 'is_alu_seq' defined but not used [-Wunused-function]
static Boolean is_alu_seq(CharPtr name)
^
simutil.c: In function 'sort_align_list':
simutil.c:602:20: warning: 'score2' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (score2 > score1) { /* swap */
^
simutil.c:602:20: warning: 'score1' may be used uninitialized in this function [-Wmaybe-uninitialized]
simutil.c: In function 'get_top_K_alignment':
simutil.c:659:16: warning: 'score' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (score < cut_off) break;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF slist.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF sec.c
sec.c: In function 'Region':
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:268:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:292:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:321:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
ext_score += V[seq1[i]][seq2[j]];
^
sec.c:345:5: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
diag_score = diag_score + V[seq1[i]][seq2[j]];
^
sec.c:428:8: warning: array subscript has type 'char' [-Wchar-subscripts]
sec.c:72:37: warning: 'ppj' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define Min(x,y) ((x) <= (y) ? (x) : (y))
^
sec.c:172:20: note: 'ppj' was declared here
Int4 pi, pj, ppi, ppj;
^
sec.c:172:15: warning: 'ppi' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 pi, pj, ppi, ppj;
^
sec.c:405:26: warning: 'ej' may be used uninitialized in this function [-Wmaybe-uninitialized]
c = ((FloatHi)z_ALIGN(seq1-1,seq2-1,bi,bj,ei,ej,LB,RB,V,G,H,S+fk))/DIGIT + (FloatHi)fk + (FloatHi)lk;
^
sec.c:405:26: warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized]
sec.c:405:26: warning: 'bj' may be used uninitialized in this function [-Wmaybe-uninitialized]
sec.c:468:13: warning: 'bi' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(LB+bi);
^
sec.c:159:10: warning: 'RB' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr RB;
^
sec.c:158:10: warning: 'LB' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4Ptr LB;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function 'find_orf':
tfuns.c:846:26: warning: unused variable 'into' [-Wunused-variable]
IntFuzzPtr infrom=NULL, into=NULL;
^
tfuns.c:846:13: warning: unused variable 'infrom' [-Wunused-variable]
IntFuzzPtr infrom=NULL, into=NULL;
^
tfuns.c: At top level:
tfuns.c:956:13: warning: 'find_orf_from_circle' defined but not used [-Wunused-function]
static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF toasn3.c
toasn3.c: In function 'FindOrg':
toasn3.c:1311:17: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
toasn3.c: In function 'CheckQualsWithComm':
toasn3.c:1592:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toasn3.c: In function 'CheckQuals':
toasn3.c:1629:18: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toasn3.c: In function 'CountSourceFeat':
toasn3.c:2415:13: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
toasn3.c:2406:19: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
toasn3.c: In function 'TASNTrimInternalSemicolons':
toasn3.c:3986:12: warning: variable 'tmp' set but not used [-Wunused-but-set-variable]
CharPtr tmp;
^
toasn3.c: In function 'ImpFeatToProtRef':
toasn3.c:4672:13: warning: variable 'lfree' set but not used [-Wunused-but-set-variable]
Boolean lfree = FALSE, partial5, partial3;
^
toasn3.c: In function 'RemovePeptideImpFeats':
toasn3.c:4967:24: warning: variable 'ifp' set but not used [-Wunused-but-set-variable]
ImpFeatPtr ifp;
^
In file included from ../include/asn2ff6.h:142:0,
from toasn3.c:19:
toasn3.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
toasn3.c:1572:16: warning: 'GetQualValue' defined but not used [-Wunused-function]
static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
^
toasn3.c: In function 'GetOriginalBeforeAdjustment':
toasn3.c:4185:29: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (last != NULL && last->choice != SEQLOC_INT) /* this is too weird */
^
toasn3.c: In function 'FixNucProtSet':
toasn3.c:2058:21: warning: 'bseg' may be used uninitialized in this function [-Wmaybe-uninitialized]
bseg->annot = sap;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function 'ChkSegset':
toporg.c:62:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE;
^
toporg.c:61:17: warning: variable 'orp' set but not used [-Wunused-but-set-variable]
OrgRefPtr orp;
^
toporg.c:58:17: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
toporg.c:53:17: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
^
toporg.c: In function 'ChkNucProt':
toporg.c:594:51: warning: variable 'is_title' set but not used [-Wunused-but-set-variable]
Boolean is_org = FALSE, is_modif = FALSE, is_title = FALSE;
^
toporg.c: In function 'StripBSfromParts':
toporg.c:1280:17: warning: variable 'empty' set but not used [-Wunused-but-set-variable]
Boolean empty;
^
toporg.c:1279:17: warning: variable 'bsmp' set but not used [-Wunused-but-set-variable]
BSMapPtr bsmp;
^
toporg.c:1278:29: warning: variable 'set_vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr descr, vnp, set_vnp;
^
toporg.c: In function 'MapsToGenref':
toporg.c:1944:17: warning: variable 'loc' set but not used [-Wunused-but-set-variable]
SeqLocPtr loc;
^
toporg.c:1939:17: warning: variable 'descr' set but not used [-Wunused-but-set-variable]
ValNodePtr descr = NULL, head, last, vnp;
^
toporg.c: In function 'FindOldLineage':
toporg.c:2521:17: warning: variable 'lineage' set but not used [-Wunused-but-set-variable]
CharPtr lineage;
^
toporg.c: In function 'StripBadTitleFromProteinProducts':
toporg.c:4968:22: warning: variable 'tech' set but not used [-Wunused-but-set-variable]
Uint1 tech;
^
toporg.c: At top level:
toporg.c:3010:13: warning: 'BarCodeTechToKeyword' defined but not used [-Wunused-function]
static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
^
toporg.c: In function 'MergeEquivCitSubs':
toporg.c:3831:16: warning: 'csp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
alp1 = csp1->authors;
^
toporg.c: In function 'CheckMaps':
toporg.c:1715:11: warning: 'to' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->to = to;
^
toporg.c:1696:24: note: 'to' was declared here
Int4 from, to;
^
toporg.c:1714:13: warning: 'from' may be used uninitialized in this function [-Wmaybe-uninitialized]
sip->from = from;
^
toporg.c:1696:18: note: 'from' was declared here
Int4 from, to;
^
toporg.c: In function 'ConvertSegSetToDeltaSeq':
toporg.c:6566:29: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqMgrClearFeatureIndexes (entityID, NULL);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pobutil.c
pobutil.c: In function 'build_repeat_feat':
pobutil.c:187:7: warning: unused variable 'c' [-Wunused-variable]
Char c='%';
^
pobutil.c: In function 'merge_StdSeg':
pobutil.c:1033:7: warning: variable 'start_1' set but not used [-Wunused-but-set-variable]
Int4 start_1, stop_1, start_2, stop_2;
^
pobutil.c:1031:7: warning: unused variable 'overlap' [-Wunused-variable]
Int4 overlap = -1;
^
pobutil.c: In function 'AluFeat':
pobutil.c:2431:10: warning: variable 'my_userdata' set but not used [-Wunused-but-set-variable]
Pointer my_userdata;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF stsutil.c
stsutil.c: In function 'InitSTSSearch_r':
stsutil.c:270:10: warning: unused variable 'StsCount' [-Wunused-variable]
Int4 StsCount=0;
^
stsutil.c: In function 'GetSTSEntry':
stsutil.c:635:13: warning: variable 'p' set but not used [-Wunused-but-set-variable]
CharPtr p;
^
stsutil.c: In function 'STSCalculateHash':
stsutil.c:753:9: warning: array subscript has type 'char' [-Wchar-subscripts]
if ((j = HashCode[*p++]) < 0)
^
stsutil.c: In function 'STSReverse':
stsutil.c:771:9: warning: array subscript has type 'char' [-Wchar-subscripts]
if ((*t = ComplCode[*s]) == 0)
^
stsutil.c: In function 'InitHashTable':
stsutil.c:910:21: warning: variable 'sts_uid' set but not used [-Wunused-but-set-variable]
CharPtr gb_uid, sts_uid;
^
stsutil.c:910:13: warning: variable 'gb_uid' set but not used [-Wunused-but-set-variable]
CharPtr gb_uid, sts_uid;
^
stsutil.c:908:23: warning: variable 'gi' set but not used [-Wunused-but-set-variable]
Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
^
stsutil.c:908:10: warning: variable 'id_sts' set but not used [-Wunused-but-set-variable]
Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
^
stsutil.c:907:23: warning: unused variable 'error' [-Wunused-variable]
Int4 LineLength, error= FALSE;
^
stsutil.c: At top level:
stsutil.c:892:13: warning: 'STSHashInitFree' defined but not used [-Wunused-function]
static void STSHashInitFree(STSHashInitPtr sts)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF suggadj.c
suggadj.c: In function 'score_possible_splice_sites':
suggadj.c:874:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
^
suggadj.c:875:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
^
suggadj.c:878:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
^
suggadj.c:879:1: warning: array subscript has type 'char' [-Wchar-subscripts]
score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
^
suggadj.c: In function 'check_split_codon':
suggadj.c:985:1: warning: array subscript has type 'char' [-Wchar-subscripts]
val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
^
suggadj.c:986:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-2]]*4+
^
suggadj.c:987:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-1]];
^
suggadj.c:998:1: warning: array subscript has type 'char' [-Wchar-subscripts]
val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
^
suggadj.c:999:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[left_ends+2]] * 4 +
^
suggadj.c:1000:2: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_starts-1]];
^
suggadj.c: In function 'overlapping_fixer':
suggadj.c:1370:5: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val = vx[seq_or_rev[left_exon_ends]]*16 +
^
suggadj.c:1371:6: warning: array subscript has type 'char' [-Wchar-subscripts]
vx[seq_or_rev[right_exon_starts-1]];
^
suggadj.c:1373:6: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
^
suggadj.c:1375:6: warning: array subscript has type 'char' [-Wchar-subscripts]
test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF suggest.c
suggest.c: In function 'get_frames':
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
^
suggest.c:458:4: warning: array subscript has type 'char' [-Wchar-subscripts]
suggest.c: At top level:
suggest.c:1222:1: warning: 'fprintf_m_stk_entry' defined but not used [-Wunused-function]
fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
^
suggest.c:1331:13: warning: 'ReportSuggestIntervalsError' defined but not used [-Wunused-function]
static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF suggslp.c
suggslp.c: In function 'MakeReverseSequence':
suggslp.c:190:3: warning: array subscript has type 'char' [-Wchar-subscripts]
*t++ = r[*--s];
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast.c
blast.c: In function 'BlastReevaluateWithAmbiguities':
blast.c:2954:24: warning: variable 'query_end' set but not used [-Wunused-but-set-variable]
Uint1Ptr query_start, query_end, subject_real_start=NULL;
^
blast.c:2949:16: warning: variable 'hspcnt' set but not used [-Wunused-but-set-variable]
Int4 context, hspcnt, hspcnt_max, index, index1, status;
^
blast.c: In function 'BlastGetVirtualOIDList':
blast.c:3179:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (virtual_oidlist = rdfp_chain->oidlist) {
^
blast.c: In function 'BlastGetDbChunk':
blast.c:3210:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
^
blast.c: In function 'BlastCreateQueryDNAP':
blast.c:4100:11: warning: variable 'strand_option' set but not used [-Wunused-but-set-variable]
Uint1 strand_option;
^
blast.c: In function 'BlastWordFinder_contig':
blast.c:7094:16: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
register Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c: In function 'BlastWordExtend':
blast.c:7835:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
BLAST_Score leftsum, rightsum, rightscore, leftscore;
^
blast.c: In function 'BlastNewWordExtend':
blast.c:7982:46: warning: variable 'leftscore' set but not used [-Wunused-but-set-variable]
BLAST_Score leftsum, rightsum, rightscore, leftscore;
^
blast.c: In function 'BlastNtWordFinder_mh':
blast.c:8843:23: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
register Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c:8842:103: warning: variable 'compression_factor' set but not used [-Wunused-but-set-variable]
Int4 s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
^
blast.c: In function 'BlastNtWordFinder':
blast.c:9076:14: warning: variable 'bits_to_shift' set but not used [-Wunused-but-set-variable]
Int4 bits_to_shift, min_diag_length, min_diag_mask;
^
blast.c: In function 'BlastSaveCurrentHitlist':
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if( hitlist_max > 1 )
^
blast.c:9785:7: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
Int4 query_length;
^
blast.c: In function 'SumHSPEvalue':
blast.c:10588:9: warning: variable 'gap_size' set but not used [-Wunused-but-set-variable]
Int4 gap_size, num, subject_length;
^
blast.c: In function 'link_hsps':
blast.c:11267:10: warning: variable 'frame_change' set but not used [-Wunused-but-set-variable]
Boolean frame_change, linked_set, ignore_small_gaps;
^
blast.c: In function 'blastMergeFilterLocs':
blast.c:3983:16: warning: 'dup_slp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (dup_slp->choice == SEQLOC_PACKED_INT) {
^
blast.c: In function 'BlastLinkHsps':
blast.c:10455:41: warning: 'orig_hitlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->current_hitlist = orig_hitlist;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blastutl.c
blastutl.c: In function 'BlastSeqLocFilterEx':
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
stop_timer("after repeat filtering");
^
blastutl.c: In function 'BlastPreliminaryGappedScore':
blastutl.c:9853:30: warning: variable 'query_length' set but not used [-Wunused-but-set-variable]
Int4 index, max_offset = 0, query_length, min_score;
^
blastutl.c: In function 'BlastGetGappedScore':
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
stop_timer("after BlastGappedScoreInternal");
^
blastutl.c: In function 'BlastNtFindWords':
blastutl.c:11445:10: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = MIN(end, len-initial_wordsize);
^
blastutl.c: In function 'BlastFindWords':
blastutl.c:11623:8: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
stop = MIN(stop, len);
^
blastutl.c:11711:18: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
^
blastutl.c:11704:17: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score+first_score;
^
blastutl.c:11695:11: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'BlastNewFindWords_Old':
blastutl.c:11931:18: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += MtrxScorePosSearch(search->sbp,
^
blastutl.c:11924:17: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score+first_score;
^
blastutl.c:11915:11: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'BlastNewFindWordsEx':
blastutl.c:12124:30: warning: 'start_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score2 += posMatrix[offset+index2][*(words+index2)];
^
blastutl.c:12118:29: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
start_score = second_score + first_score;
^
blastutl.c:12110:23: warning: 'diff' may be used uninitialized in this function [-Wmaybe-uninitialized]
diff2 += diff;
^
blastutl.c: In function 'RealBlastGetGappedAlignmentTraceback':
blastutl.c:9377:56: warning: 'seqalign_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqalign_array[index2] =
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blastool.c
blastool.c: In function 'OOFBlastHSPGetNumIdentical':
blastool.c:6081:9: warning: variable 'context' set but not used [-Wunused-but-set-variable]
Int2 context;
^
blastool.c: In function 'BlastCreateVirtualOIDList':
blastool.c:2556:24: warning: 'gilist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDoubleInt4Ptr gilist, real_gilist = NULL, *real_gilist_ptrs = NULL;
^
blastool.c: In function 'BlastInsertList2Heap':
blastool.c:3600:13: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = 2*query_length - hsp->query_offset;
^
blastool.c: In function 'BlastFreeHeap':
blastool.c:3692:13: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
end = 2*query_length - hsp->query_offset;
^
blastool.c: In function 'BLASTFilterOverlapRegions':
blastool.c:4531:24: warning: 'next_tail' may be used uninitialized in this function [-Wmaybe-uninitialized]
tail->next = seqalign;
^
blastool.c: In function 'BlastPrintAlignInfo':
blastool.c:4800:23: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap->next = SeqAlignNew();
^
blastool.c: In function 'MegaBlastPrintAlignInfo':
blastool.c:5321:17: warning: 'subject_seq_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(subject_seq_buffer);
^
blastool.c:5320:17: warning: 'query_seq_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(query_seq_buffer);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blastconcat.c
blastconcat.c: In function 'BlastMakeFakeBspConcat':
blastconcat.c:648:12: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF splutil.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
gapxdrop.c: In function 'ALIGN_EX':
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s == 1)
^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (s == 2)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg0.c
bandalg0.c: In function 'g_band0_align':
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(leftd >= 1)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg1.c
bandalg1.c: In function 'gband_quadratic':
bandalg1.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg1.c: In function 'g_band1_align':
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if(leftd >= 1)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg2.c
bandalg2.c: In function 'gb_linear_align':
bandalg2.c:208:24: warning: variable 'misma' set but not used [-Wunused-but-set-variable]
register Int4 match, misma;
^
bandalg2.c:208:17: warning: variable 'match' set but not used [-Wunused-but-set-variable]
register Int4 match, misma;
^
bandalg2.c:207:18: warning: variable 'AA' set but not used [-Wunused-but-set-variable]
register Uint1 AA;
^
bandalg2.c:494:15: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (rmid > Y - X) {
^
bandalg2.c:494:15: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg3.c
bandalg3.c: In function 'gband_linear_qgap':
bandalg3.c:54:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg3.c:314:41: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
else if(Y != rightd) _INS(rightd-Y)
^
bandalg3.c:185:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg3.c:313:5: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M) _DEL(M - X)
^
bandalg3.c:185:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg4.c
bandalg4.c: In function 'g_band4_align_small':
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 1)
^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 2)
^
bandalg4.c:630:8: warning: variable 'band' set but not used [-Wunused-but-set-variable]
Int4 band, j;
^
bandalg4.c: In function 'g_band4_align':
bandalg4.c:534:22: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M || Y != N) regA = regB = 1;
^
bandalg4.c:534:12: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(X != M || Y != N) regA = regB = 1;
^
bandalg4.c:545:7: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
FP[k] = r;
^
bandalg4.c:824:27: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
k = (t=data->state[i][j]) %5;
^
bandalg4.c:640:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg4.c:824:24: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
k = (t=data->state[i][j]) %5;
^
bandalg4.c:640:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalg5.c
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:56:14: warning: variable 'j' set but not used [-Wunused-but-set-variable]
Int4 c, i, j;
^
bandalg5.c: In function 'g_band5_align':
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 1)
^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (e == 2)
^
bandalg5.c: In function 'gband_q3gap':
bandalg5.c:320:32: warning: 'Y' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Y != rightd) _INS(rightd - Y);
^
bandalg5.c:146:28: note: 'Y' was declared here
Int4 ib, best=MININT, X, Y;
^
bandalg5.c:319:6: warning: 'X' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (X != M) _DEL(M - X);
^
bandalg5.c:146:25: note: 'X' was declared here
Int4 ib, best=MININT, X, Y;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bandalgn.c
bandalgn.c: In function 'ExtendSeqAlign':
bandalgn.c:1113:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
bandalgn.c: In function 'CC_ExtendSeqAlign':
bandalgn.c:1188:22: warning: variable 'ddp' set but not used [-Wunused-but-set-variable]
DenseDiagPtr ddp;
^
bandalgn.c: At top level:
bandalgn.c:699:14: warning: 'HSblastna_to_ncbi4na' defined but not used [-Wunused-variable]
static Uint1 HSblastna_to_ncbi4na[] = { 1, /* A, 0 */
^
bandalgn.c: In function 'LocalBandToEditBlock':
bandalgn.c:463:20: warning: 'edit_block' may be used uninitialized in this function [-Wmaybe-uninitialized]
lbsp->edit_block = edit_block;
^
bandalgn.c: In function 'SetLowUpFromBlast':
bandalgn.c:1053:7: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (maxsc < val) {
^
bandalgn.c:1060:7: warning: 'alnlen' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (maxlen < alnlen) {
^
bandalgn.c:1070:9: warning: 'maxdi_up' may be used uninitialized in this function [-Wmaybe-uninitialized]
maxy = MAX(maxy,maxdi_up);
^
bandalgn.c:1069:9: warning: 'mindi_low' may be used uninitialized in this function [-Wmaybe-uninitialized]
miny = MIN(miny,mindi_low);
^
bandalgn.c:1062:10: warning: 'maxdi' may be used uninitialized in this function [-Wmaybe-uninitialized]
maxy = maxdi + width;
^
bandalgn.c:1063:10: warning: 'mindi' may be used uninitialized in this function [-Wmaybe-uninitialized]
miny = mindi - width;
^
bandalgn.c: In function 'GetAlignExtremes':
bandalgn.c:1309:7: warning: 'y2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*yy2 = y2;
^
bandalgn.c:1308:7: warning: 'y1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*yy1 = y1;
^
bandalgn.c:1307:7: warning: 'x2' may be used uninitialized in this function [-Wmaybe-uninitialized]
*xx2 = x2;
^
bandalgn.c:1306:7: warning: 'x1' may be used uninitialized in this function [-Wmaybe-uninitialized]
*xx1 = x1;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blastkar.c
blastkar.c:1053:21: warning: 'blosum62_20_values' defined but not used [-Wunused-variable]
static Nlm_FloatHi blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
^
blastkar.c:1121:13: warning: 'blosum62_20_prefs' defined but not used [-Wunused-variable]
static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
^
blastkar.c:2347:25: warning: 'Dayhoff_prob' defined but not used [-Wunused-variable]
static BLAST_LetterProb Dayhoff_prob[] = {
^
blastkar.c:2373:25: warning: 'Altschul_prob' defined but not used [-Wunused-variable]
static BLAST_LetterProb Altschul_prob[] = {
^
blastkar.c: In function 'BLAST_ScoreBlkNew':
blastkar.c:1213:29: warning: 'sctp' may be used uninitialized in this function [-Wmaybe-uninitialized]
sbp->alphabet_size = sctp->num;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF actutils.c
actutils.c: In function 'SlideToHit':
actutils.c:346:23: warning: variable 'done' set but not used [-Wunused-but-set-variable]
Boolean inIsland, done;
^
actutils.c:346:13: warning: variable 'inIsland' set but not used [-Wunused-but-set-variable]
Boolean inIsland, done;
^
actutils.c: In function 'ResolveSpinConflict':
actutils.c:1484:35: warning: unused variable 'row2_conflict' [-Wunused-variable]
Boolean row1_conflict = FALSE, row2_conflict = FALSE;
^
actutils.c:1484:12: warning: unused variable 'row1_conflict' [-Wunused-variable]
Boolean row1_conflict = FALSE, row2_conflict = FALSE;
^
actutils.c: In function 'ACT_FindBestAlnByDotPlot':
actutils.c:2002:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
actutils.c:2001:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
actutils.c:2000:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
actutils.c:749:13: warning: 'StateTableSearch' defined but not used [-Wunused-function]
static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
^
actutils.c:1375:16: warning: 'am_isa_gap' defined but not used [-Wunused-function]
static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
^
actutils.c:1392:13: warning: 'am_fix_strand' defined but not used [-Wunused-function]
static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
^
actutils.c:1654:16: warning: 'SpinsConflict' defined but not used [-Wunused-function]
static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
^
actutils.c:2927:13: warning: 'MapBioseqToBioseqSpecial' defined but not used [-Wunused-function]
static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
^
actutils.c:3132:13: warning: 'DumpAlignments' defined but not used [-Wunused-function]
static void DumpAlignments (SeqAlignPtr salp)
^
actutils.c: In function 'GetOldBlastAlignmentPiece':
actutils.c:3128:11: warning: 'program' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(program);
^
actutils.c: In function 'ACT_FindPeakScores':
actutils.c:1342:31: warning: 'ats_newprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
ats_newprev->next = ats_new;
^
actutils.c:1321:28: warning: 'ats_prev' may be used uninitialized in this function [-Wmaybe-uninitialized]
ats_prev->next = ats;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF posit.c
posit.c: In function 'posDemographics':
posit.c:1110:17: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
Int4 numseq, numSeqAligns; /*number of matching sequences and SeqAligns*/
^
posit.c: In function 'posFreqsToMatrix':
posit.c:1679:45: warning: operation on '*(*(posSearch->posPrivateMatrix + (sizetype)((unsigned int)length * 4u)) + (sizetype)((unsigned int)a * 4u))' may be undefined [-Wsequence-point]
posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
^
posit.c: In function 'posComputePseudoFreqs':
posit.c:1840:16: warning: variable 'lambda' set but not used [-Wunused-but-set-variable]
Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
^
posit.c: In function 'WposComputation':
posit.c:1988:13: warning: variable 'numSeqAligns' set but not used [-Wunused-but-set-variable]
Int4 i, numSeqAligns, numseq, qlength;
^
posit.c: In function 'posPrintInformation':
posit.c:2319:8: warning: variable 'querySize' set but not used [-Wunused-but-set-variable]
Int4 querySize;
^
posit.c: In function 'posFindAlignmentDimensions':
posit.c:3087:20: warning: 'testCountSeqs' may be used uninitialized in this function [-Wmaybe-uninitialized]
testCountSeqs++;
^
posit.c: In function 'posComputeSequenceWeights':
posit.c:1447:36: warning: 'intervalSigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
posSearch->posSigma[qplace] = intervalSigma;
^
posit.c:1424:11: warning: 'Sigma' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (Sigma > 0) {
^
posit.c: In function 'posReadCheckpoint':
posit.c:2873:28: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (i < pssm->numColumns || j < pssm->numRows) {
^
posit.c:2702:11: note: 'j' was declared here
Int4 i, j, c;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF lookup.c
lookup.c: In function 'lookup_get_memory':
lookup.c:555:28: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Uint8 extra = ((Uint8)mem_struct->current) & ((Uint8) 63);
^
In file included from ../include/blastdef.h:922:0,
from ../include/blast.h:470,
from lookup.c:309:
lookup.c: In function 'MegaBlastBuildLookupTable':
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1047:35: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1051:35: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1078:31: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq) | bit0;
^
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses]
#define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
^
lookup.c:1082:31: note: in expansion of macro 'GET_EXTRA_CODE_18_OPT'
GET_EXTRA_CODE_18_OPT(seq) | bit0;
^
lookup.c:914:25: warning: variable 'extra_code' set but not used [-Wunused-but-set-variable]
register Int4 ecode, extra_code;
^
lookup.c:975:10: warning: 'word_weight' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (word_weight >= 12) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF readdb.c
readdb.c: In function 'readdb_parse_db_names':
readdb.c:2498:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (**filenames == '"')
^
readdb.c: In function 's_GetBlastDirInfo':
readdb.c:2729:32: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
memset(blast_dir, 0, sizeof(blast_dir));
^
readdb.c: In function 'FindBlastDBFileEx':
readdb.c:3475:33: warning: unused variable 'envp' [-Wunused-variable]
CharPtr buffer, buffer1, envp = NULL;
^
readdb.c: In function 'readdb_new_internalEx':
readdb.c:3553:25: warning: unused variable 'envp' [-Wunused-variable]
CharPtr charptr, envp = NULL;
^
readdb.c: In function 'readdb_get_link':
readdb.c:4747:12: warning: variable 'loaded_new' set but not used [-Wunused-but-set-variable]
Boolean loaded_new = FALSE;
^
readdb.c:4746:24: warning: variable 'last_used' set but not used [-Wunused-but-set-variable]
ReadDBFILEPtr last, last_used, rdfp_var;
^
readdb.c: In function 'readdb_check_oid':
readdb.c:4891:38: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning [-Wparentheses]
if (rdfp_var->start <= oid <= rdfp_var->stop)
^
readdb.c: In function 'readdb_seqid2fasta':
readdb.c:5231:22: warning: unused variable 'dummy_gi' [-Wunused-variable]
Int4 dummy_gi = 0; /* Not used, should have been handled above. */
^
readdb.c:5175:13: warning: unused variable 'chptr' [-Wunused-variable]
CharPtr chptr = NULL;
^
readdb.c: In function 'FDBuildOldStyleDefline':
readdb.c:6361:33: warning: argument to 'sizeof' in 'memset' call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
MemSet(defline, '\0', sizeof(defline));
^
readdb.c: In function 'FDBLoadMembershipsTable':
readdb.c:8260:21: warning: variable 'fn_name' set but not used [-Wunused-but-set-variable]
const char* fn_name = NULL;
^
readdb.c: In function 'SeqIdE2Index':
readdb.c:8572:13: warning: unused variable 'tmp' [-Wunused-variable]
CharPtr tmp, ptr=NULL;
^
readdb.c:8571:11: warning: unused variable 'tmptype' [-Wunused-variable]
Uint1 tmptype;
^
readdb.c: In function 'SeqIdSetE2Index':
readdb.c:8876:14: warning: variable 'oldanp' set but not used [-Wunused-but-set-variable]
SeqIdPtr oldanp;
^
readdb.c: In function 'Fastacmd_Search_ex':
readdb.c:12072:22: warning: variable 'guess_gi' set but not used [-Wunused-but-set-variable]
Int4 guess_gi = -1;
^
readdb.c: In function 'DumpOneSequence':
readdb.c:12409:14: warning: unused variable 'numeric_id' [-Wunused-variable]
Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
^
In file included from readdb.c:2055:0:
readdb.c: At top level:
../include/ncbisami.h:183:14: warning: 'PowersOfTwo' defined but not used [-Wunused-variable]
static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
^
../include/ncbisami.h:191:14: warning: 'OneBit' defined but not used [-Wunused-variable]
static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
^
In file included from ../include/sqnutils.h:51:0,
from readdb.c:2062:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
readdb.c:12821:1: warning: 'readdb_preload_index' defined but not used [-Wunused-function]
readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
^
readdb.c: In function 'readdb_get_taxonomy_names':
readdb.c:5674:28: warning: 'ufp_last' may be used uninitialized in this function [-Wmaybe-uninitialized]
ufp_last->next = ufp;
^
readdb.c: In function 'readdb_get_descriptor':
readdb.c:6663:44: warning: 'new_defline_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_defline_length += StringLen(defline) + StringLen(id_buf);
^
readdb.c: In function 'GetAccList':
readdb.c:11813:29: warning: 'AccListLast' may be used uninitialized in this function [-Wmaybe-uninitialized]
AccListLast->next = AccListTmp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbisam.c
ncbisam.c: In function 'ISAMMakeStringIndex':
ncbisam.c:842:22: warning: unused variable 'file_pos' [-Wunused-variable]
Int4 file_pos = ftell(data->db_fd);
^
ncbisam.c: In function 'ISAMInitSearch':
ncbisam.c:1399:10: warning: variable 'reserved2' set but not used [-Wunused-but-set-variable]
Int4 reserved2;
^
ncbisam.c: In function 'ISAMMakeIndex':
ncbisam.c:984:21: warning: 'KeyDataInfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
^
ncbisam.c:983:14: warning: 'KeyInfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
Uint4Ptr KeyInfo, KeySamples;
^
ncbisam.c: In function 'ISAMCreateDatabase':
ncbisam.c:1372:12: warning: 'prevterm' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(prevterm);
^
ncbisam.c:1331:29: warning: 'field_in' may be used uninitialized in this function [-Wmaybe-uninitialized]
ErrLogPrintf("Invalidly formatted database. Database creation "
^
ncbisam.c: In function 'NISAMSearch':
ncbisam.c:1814:32: warning: 'KeyDataPageStart' may be used uninitialized in this function [-Wmaybe-uninitialized]
KeyDataPageStart = MemFree(KeyDataPageStart);
^
ncbisam.c:1812:28: warning: 'KeyPageStart' may be used uninitialized in this function [-Wmaybe-uninitialized]
KeyPageStart = MemFree(KeyPageStart);
^
ncbisam.c:1750:36: warning: 'KeyPage' may be used uninitialized in this function [-Wmaybe-uninitialized]
Key = SwapUint4(KeyPage[current]);
^
ncbisam.c:1593:24: warning: 'SampleNum' may be used uninitialized in this function [-Wmaybe-uninitialized]
*Start = SampleNum * data->PageSize;
^
ncbisam.c:1618:27: note: 'SampleNum' was declared here
Int4 Start = 0, Stop, SampleNum;
^
ncbisam.c: In function 'SISAMSearch':
ncbisam.c:2373:8: warning: 'SampleNum' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbisort.c
ncbisort.c: In function 'SORTFracCompare':
ncbisort.c:692:12: warning: type defaults to 'int' in declaration of 'tmpa' [-Wimplicit-int]
register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
^
ncbisort.c:692:30: warning: type defaults to 'int' in declaration of 'tmpb' [-Wimplicit-int]
register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
^
In file included from ncbisort.c:83:0:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: 'inthandler' declared 'static' but never defined [-Wunused-function]
static void inthandler(int i);
^
ncbisort.c: In function 'SORTMergeFPS':
ncbisort.c:1110:10: warning: 'savealloc' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (savealloc < lines[ord[0]].lines[cur[ord[0]]].length + 1) {
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salign.c
salign.c: In function 'BandAlignTwoSeqLocsFunc':
salign.c:173:13: warning: variable 'is_prot' set but not used [-Wunused-but-set-variable]
Boolean is_prot;
^
salign.c: In function 'SortBlastHits':
salign.c:391:15: warning: variable 'totalvalmax' set but not used [-Wunused-but-set-variable]
totalvalmax = INT4_MAX,
^
salign.c: In function 'link_solution':
salign.c:1188:15: warning: unused variable 'first' [-Wunused-variable]
Boolean first = TRUE;
^
salign.c: In function 'SortBlastHits':
salign.c:455:22: warning: 'salpdup' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignSetFree (salpdup);
^
salign.c: In function 'TranslateSeqLoc.constprop.5':
salign.c:660:3: warning: 'slpp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return slpp;
^
salign.c: In function 'BlastTwoSeqLocs':
salign.c:591:18: warning: 'strand2' may be used uninitialized in this function [-Wmaybe-uninitialized]
sit->strand = strand2;
^
salign.c:589:18: warning: 'strand1' may be used uninitialized in this function [-Wmaybe-uninitialized]
sit->strand = strand1;
^
salign.c: In function 'BlastBandAlignTwoSeqLocs.isra.4':
salign.c:1433:17: warning: 'tail' may be used uninitialized in this function [-Wmaybe-uninitialized]
tail->next = salptmp;
^
salign.c:1408:15: note: 'tail' was declared here
tail,
^
salign.c:1348:38: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
^
salign.c:1301:30: note: 'stop' was declared here
Int4 start, start1, stop;
^
salign.c:1348:38: warning: 'start1' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
^
salign.c:1301:22: note: 'start1' was declared here
Int4 start, start1, stop;
^
salign.c:1270:38: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
^
salign.c:1229:30: note: 'stop' was declared here
Int4 start, start1, stop;
^
salign.c:1270:38: warning: 'start1' may be used uninitialized in this function [-Wmaybe-uninitialized]
intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
^
salign.c:1229:22: note: 'start1' was declared here
Int4 start, start1, stop;
^
salign.c: In function 'SeqLocListToSeqAlign':
salign.c:1672:23: warning: 'slptmp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
salpnew = BandAlignTwoSeqLocs (master_slp, slp, msp);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF salptool.c
salptool.c: In function 'MergeTwoDspBySIM4':
salptool.c:285:10: warning: variable 'has_overlap' set but not used [-Wunused-but-set-variable]
Boolean has_overlap;
^
salptool.c:281:7: warning: variable 'gap' set but not used [-Wunused-but-set-variable]
Int4 gap=0,gap_1, gap_2;
^
In file included from ../include/sqnutils.h:51:0,
from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from salptool.c:14:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
salptool.c:46:13: warning: 'SeqAnnotWrite' defined but not used [-Wunused-function]
static void SeqAnnotWrite(SeqAlignPtr align)
^
salptool.c:838:13: warning: 'SeqLocTrimPolyATail' defined but not used [-Wunused-function]
static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
^
salptool.c:1267:16: warning: 'need_recompute' defined but not used [-Wunused-function]
static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
^
salptool.c:1453:13: warning: 'getlengthforid' defined but not used [-Wunused-function]
static Int4 getlengthforid (SeqIdPtr sip)
^
salptool.c:1468:13: warning: 'showtextalign_fromalign' defined but not used [-Wunused-function]
static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
^
salptool.c:1518:24: warning: 'OrderBestHits' defined but not used [-Wunused-function]
static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkutil.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkpcc.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkptpf.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkepi.c
urkepi.c: In function 'PredictEpiI0':
urkepi.c:214:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*seq] += 1;
^
urkepi.c:239:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
^
urkepi.c:240:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*seq] += 1;
^
urkepi.c:241:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
^
urkepi.c:263:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
^
urkepi.c:264:7: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[*(seq-window)] -= 1;
^
urkepi.c:265:7: warning: array subscript has type 'char' [-Wchar-subscripts]
episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
^
urkepi.c: In function 'OptimizeEpiComp':
urkepi.c:605:11: warning: array subscript has type 'char' [-Wchar-subscripts]
bin[seq[i]] += 1;
^
urkepi.c:621:11: warning: array subscript has type 'char' [-Wchar-subscripts]
bin[seq[i]] += 1;
^
urkepi.c:651:7: warning: array subscript has type 'char' [-Wchar-subscripts]
if (fbin[seq[i]] > expect)
^
urkepi.c:657:7: warning: array subscript has type 'char' [-Wchar-subscripts]
if (fbin[seq[i]] > expect)
^
urkepi.c: In function 'OptimizeEpiHP':
urkepi.c:782:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[j]] += 1;
^
urkepi.c:797:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[j]] += 1;
^
urkepi.c:837:11: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] -= 1;
^
urkepi.c: In function 'OptimizeEpiProbFunc':
urkepi.c:982:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] += 1;
^
urkepi.c:994:13: warning: array subscript has type 'char' [-Wchar-subscripts]
epip->epiarray[seq[n]] += 1;
^
urkepi.c: In function 'FilterEpi':
urkepi.c:1053:21: warning: 'right' may be used uninitialized in this function [-Wmaybe-uninitialized]
cfap->right = right;
^
urkepi.c:936:56: note: 'right' was declared here
Int4 i, n, j, k, start, stop, loop, fact, left, right;
^
urkepi.c:1052:20: warning: 'left' may be used uninitialized in this function [-Wmaybe-uninitialized]
cfap->left = left;
^
urkepi.c:936:50: note: 'left' was declared here
Int4 i, n, j, k, start, stop, loop, fact, left, right;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkfltr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkdust.c
urkdust.c: In function 'DustMe_h':
urkdust.c:196:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
(dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
^
urkdust.c: In function 'DustForGraph':
urkdust.c:776:17: warning: variable 'drphead' set but not used [-Wunused-but-set-variable]
DustRegionPtr drphead;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urksigu.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c: In function 'getprob':
seg.c:935:15: warning: 'ans2' may be used uninitialized in this function [-Wmaybe-uninitialized]
ans = ans1 + ans2 - totseq;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkbias.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
urkcnsrt.c:1203:13: warning: 'ScanFrame' defined but not used [-Wunused-function]
static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
^
urkcnsrt.c: In function 'Scan3Frames':
urkcnsrt.c:1312:34: warning: 'length' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 i, n, start, stop, length, chunk;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF urktree.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pseed3.c
pseed3.c: In function 'SeedPruneHitsFromSeedReturn':
pseed3.c:230:17: warning: variable 'curSegs' set but not used [-Wunused-but-set-variable]
DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
^
pseed3.c: In function 'seedEngineCore':
pseed3.c:507:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
^
pseed3.c: In function 'output_hits':
pseed3.c:1202:10: warning: variable 'posBaseIndex' set but not used [-Wunused-but-set-variable]
Int4 posBaseIndex; /*loop index for copying pos results arrays*/
^
pseed3.c: In function 'init_order':
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->order[seedSearch->pchars[i]] = i;
^
pseed3.c:1483:2: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1487:9: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->charMultiple[i] = 0;
^
pseed3.c:1489:2: warning: array subscript has type 'char' [-Wchar-subscripts]
if (seedSearch->standardProb[i] > seedepsilon) {
^
pseed3.c:1490:4: warning: array subscript has type 'char' [-Wchar-subscripts]
matrixRow = matrix[i];
^
pseed3.c:1493:6: warning: array subscript has type 'char' [-Wchar-subscripts]
if (seedSearch->standardProb[j] > seedepsilon)
^
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
^
pseed3.c:1494:8: warning: array subscript has type 'char' [-Wchar-subscripts]
pseed3.c:1496:4: warning: array subscript has type 'char' [-Wchar-subscripts]
seedSearch->charMultiple[i] = rowSum;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pattern1.c
pattern1.c: In function 'init_pattern':
pattern1.c:286:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability = seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c:303:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability += seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c:317:6: warning: array subscript has type 'char' [-Wchar-subscripts]
positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
^
pattern1.c: In function 'find_hitsS_DNA':
pattern1.c:534:5: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
^
pattern1.c:547:3: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
^
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to 'int' [-Wreturn-type]
static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
^
pattern1.c: In function 'and':
pattern1.c:750:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (result[i] = (a[i] & b[i]))
^
pattern1.c: In function 'align':
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (leftd >= 1)
^
pattern1.c: In function 'get_patL':
pattern1.c:1348:42: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
*end = wordIndex*BITS_PACKED_PER_WORD+j;
^
pattern1.c: In function 'align':
pattern1.c:1158:8: warning: 'CDrow' may be used uninitialized in this function [-Wmaybe-uninitialized]
score = (CDrow-1)->CC;
^
pattern1.c: In function 'get_patLL':
pattern1.c:1393:5: warning: 'pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (j = 0; j < pos; j+= wordIndex) {
^
pattern1.c: In function 'init_pattern':
pattern1.c:192:11: warning: 'tj' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 tj; /*temporary copy of j*/
^
pattern1.c: In function 'align_of_pattern':
pattern1.c:1506:30: warning: 'data' may be used uninitialized in this function [-Wmaybe-uninitialized]
local_score += ALIGN_B(querySeq-1, dbSeq-1, hitArray1[wordIndex+1], hitArray2[wordIndex+1],
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF impatool.c
impatool.c: In function 'IMPALAPrintHelp':
impatool.c:301:20: warning: 'ret_buffer' may be used uninitialized in this function [-Wmaybe-uninitialized]
ret_buffer = MemFree(ret_buffer);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF posit2.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mbalign.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF vecscrn.c
vecscrn.c: In function 'VSPrintOverviewFromSeqLocs':
vecscrn.c:1081:11: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (tmp->next)
^
vecscrn.c: In function 'VSPrintListFromSeqLocs':
vecscrn.c:1191:8: warning: 'tmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
tmp = tmp->next;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF mblast.c
mblast.c: In function 'BioseqMegaBlastEngineCore':
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
^
mblast.c:942:14: warning: variable 'seqalign' set but not used [-Wunused-but-set-variable]
SeqAlignPtr seqalign, PNTR seqalignp;
^
mblast.c: In function 'MegaBlastSetUpSearchInternalByLoc':
mblast.c:1167:16: warning: variable 'avglen' set but not used [-Wunused-but-set-variable]
Nlm_FloatHi avglen;
^
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1829:14: warning: variable 'slp' set but not used [-Wunused-but-set-variable]
SeqLocPtr slp;
^
mblast.c: In function 'MegaBlastWordFinder_disc_1b':
mblast.c:2372:32: warning: variable 'mask' set but not used [-Wunused-but-set-variable]
register Int4 s_off, ecode, mask, q_off, extra_code;
^
mblast.c: In function 'MegaBlastPackAlignmentsByQuery':
mblast.c:1864:19: warning: 'sap' may be used uninitialized in this function [-Wmaybe-uninitialized]
sap->next = seqalign_var;
^
mblast.c: In function 'MegaBlastWordFinder_disc':
mblast.c:2250:53: warning: 'ecode2' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
^
mblast.c:2117:51: warning: 'ecode1' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
^
mblast.c: In function 'MegaBlastWordFinder':
mblast.c:2620:54: warning: 'ecode2' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
^
mblast.c:2373:17: note: 'ecode2' was declared here
Int4 ecode1, ecode2;
^
mblast.c:2475:52: warning: 'ecode1' may be used uninitialized in this function [-Wmaybe-uninitialized]
(((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
^
mblast.c:2373:9: note: 'ecode1' was declared here
Int4 ecode1, ecode2;
^
mblast.c: In function 'MegaBlastGapInfoToSeqAlign':
mblast.c:3504:16: warning: 'seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqAlignPtr seqalign, seqalign_var, sap;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF rpsutil.c
rpsutil.c: In function 'RPSBlastSearchLight':
rpsutil.c:1838:10: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status;
^
rpsutil.c: In function 'RPSBgetCddHits':
rpsutil.c:2210:21: warning: variable 'found_score' set but not used [-Wunused-but-set-variable]
Boolean found_score = FALSE;
^
In file included from ../include/sqnutils.h:51:0,
from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
rpsutil.c: In function 'RPSAlignTraceBack':
rpsutil.c:1444:32: warning: 'posMatrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->sbp->posMatrix = posMatrix;
^
rpsutil.c:1433:22: warning: 'rev_subject_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
^
rpsutil.c: In function 'RPSCalcEValue':
rpsutil.c:1269:30: warning: 'posMatrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
search->sbp->posMatrix = posMatrix;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function 'Kappa_SequenceGetProteinRange':
kappa.c:1399:7: warning: unused variable 'i' [-Wunused-variable]
int i;
^
kappa.c: At top level:
kappa.c:2203:5: warning: initialization from incompatible pointer type [enabled by default]
Kappa_SequenceGetRange,
^
kappa.c:2203:5: warning: (near initialization for 'redo_align_callbacks.get_range') [enabled by default]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF xmlblast.c
xmlblast.c: In function 'PSIXmlInit':
xmlblast.c:1239:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
xmlblast.c: In function 'BXMLGetSeqLineForStdSeg':
xmlblast.c:491:34: warning: 'genetic_code2' may be used uninitialized in this function [-Wmaybe-uninitialized]
residue1 = AAForCodon(codon, master_is_translated ? genetic_code2 : genetic_code1);
^
xmlblast.c: In function 'BXMLSeqAlignToHits':
xmlblast.c:867:36: warning: 'hspp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
^
xmlblast.c: In function 'SeqAlignToHits':
xmlblast.c:1646:24: warning: 'hspp' may be used uninitialized in this function [-Wmaybe-uninitialized]
hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
bxmlobj.c: In function 'BlastOutputAsnRead':
bxmlobj.c:96:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'ParametersAsnRead':
bxmlobj.c:361:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:360:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
bxmlobj.c: In function 'IterationAsnRead':
bxmlobj.c:613:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'StatisticsAsnRead':
bxmlobj.c:829:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:828:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
bxmlobj.c: In function 'HitAsnRead':
bxmlobj.c:1039:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c: In function 'HspAsnRead':
bxmlobj.c:1244:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
bxmlobj.c:1243:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dotseq.c
dotseq.c:97:3: warning: missing braces around initializer [-Wmissing-braces]
4, -1, -2, -2, 0, -1, -1, 0, -2, -1, -1, -1, -1, -2, -1, 1, 0, -3, -2, 0, -2, -1, 0, -4,
^
dotseq.c:97:3: warning: (near initialization for 'DOTblosum62[0]') [-Wmissing-braces]
dotseq.c: In function 'DOT_BuildPLookup':
dotseq.c:887:31: warning: variable 'found_ambig' set but not used [-Wunused-but-set-variable]
Boolean EXACTMATCH, found_ambig, saved_index = FALSE;
^
dotseq.c:885:19: warning: unused variable 'threshold' [-Wunused-variable]
Int4 threshold=13; /* one-hit heuristics T must be at least 13*/
^
dotseq.c:883:19: warning: unused variable 'index' [-Wunused-variable]
Int4 index = 0;
^
dotseq.c: In function 'DOT_ComputeHits':
dotseq.c:1043:47: warning: variable 'q_end' set but not used [-Wunused-but-set-variable]
Uint1Ptr s, subject0, s_end, q_end;
^
dotseq.c:1041:19: warning: unused variable 'saved_index' [-Wunused-variable]
Boolean saved_index = FALSE;
^
dotseq.c:1039:19: warning: unused variable 'threshold' [-Wunused-variable]
Int4 threshold=13;
^
dotseq.c: In function 'DOT_SPI_FindBestAlnByDotPlot':
dotseq.c:2016:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
dotseq.c:2015:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
dotseq.c:2014:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
dotseq.c: In function 'DOT_BuildHitList':
dotseq.c:1310:19: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 index;
^
dotseq.c:1309:19: warning: 'hitlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
DOTDiagPtr PNTR hitlist;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF spidey.c
spidey.c: In function 'SPI_PrintResult':
spidey.c:1736:21: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
Int4 offset;
^
spidey.c: In function 'SPI_AlnSinglemRNAToPieces':
spidey.c:2850:19: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if (spot->from == spot->to == 0)
^
spidey.c: In function 'SPI_FillInLastmRNAHoles':
spidey.c:6295:21: warning: variable 'internal' set but not used [-Wunused-but-set-variable]
Boolean internal;
^
spidey.c: In function 'SPI_FindBestAlnByDotPlot':
spidey.c:6441:20: warning: variable 'strand' set but not used [-Wunused-but-set-variable]
Uint1 strand;
^
spidey.c:6440:20: warning: variable 'start2' set but not used [-Wunused-but-set-variable]
Int4 start2;
^
spidey.c:6439:20: warning: variable 'start1' set but not used [-Wunused-but-set-variable]
Int4 start1;
^
spidey.c: In function 'SPI_ConnectAlnPieces':
spidey.c:7810:30: warning: variable 'tmparray' set but not used [-Wunused-but-set-variable]
SPI_FragPtr PNTR tmparray;
^
spidey.c:7796:25: warning: variable 'sfpprev' set but not used [-Wunused-but-set-variable]
SPI_FragPtr sfpprev;
^
spidey.c: In function 'SPI_AdjustSplicesInPieces':
spidey.c:8444:23: warning: variable 'minus' set but not used [-Wunused-but-set-variable]
Boolean minus;
^
spidey.c: In function 'SPI_CheckMrnaOrder':
spidey.c:10292:35: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if ((ival->strand == Seq_strand_plus == ival2->strand
^
spidey.c:10296:38: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
|| (ival->strand == Seq_strand_minus == ival2->strand
^
spidey.c:10309:35: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
if ((ival->strand == Seq_strand_plus == ival2->strand
^
spidey.c:10311:38: warning: suggest parentheses around comparison in operand of '==' [-Wparentheses]
|| (ival->strand == Seq_strand_plus == ival2->strand
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/spidey.h:103,
from spidey.c:259:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
spidey.c: In function 'SPI_GetProteinFrommRNA':
spidey.c:9771:22: warning: 'c3start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 2+3*c3start;
^
spidey.c:9765:22: warning: 'c2start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 1+3*c2start;
^
spidey.c:9759:20: warning: 'c1start' may be used uninitialized in this function [-Wmaybe-uninitialized]
*start = 3*c1start;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF motif.c
motif.c: In function 'MOT_FindPolyA':
motif.c:86:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1 buf[MOT_WINSIZE];
^
motif.c: In function 'MOT_FindKozak':
motif.c:216:18: warning: variable 'buf' set but not used [-Wunused-but-set-variable]
Uint1 buf[MOT_WINSIZE];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from ../include/motif.h:48,
from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
blfmtutl.c: In function 'BlastPrintTabularResults':
blfmtutl.c:1113:13: warning: 'alignments_count' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (--alignments_count < 0)
^
blfmtutl.c:1331:19: warning: 's_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_end += s_shift;
^
blfmtutl.c:1330:21: warning: 's_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_start += s_shift;
^
blfmtutl.c:1329:19: warning: 'q_end' may be used uninitialized in this function [-Wmaybe-uninitialized]
q_end += q_shift;
^
blfmtutl.c:1328:21: warning: 'q_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
q_start += q_shift;
^
blfmtutl.c:1072:20: warning: 'query_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (SeqIdComp(query_id, old_query_id) != SIC_YES) {
^
blfmtutl.c: In function 'BlastSetUserErrorString':
blfmtutl.c:1431:13: warning: 'title' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (title[index] == NULLB || title[index] == ' ')
^
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF compo_heap.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gdfontg.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gdfontt.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pictogif.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gdfontl.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gdfonts.c
gcc -DWIN_GIF -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
ncbidrwg.c: In function 'Nlm_ClearRgn':
ncbidrwg.c:6081:16: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool;
^
ncbidrwg.c: In function 'Nlm_DiffRgn':
ncbidrwg.c:6273:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool3;
^
ncbidrwg.c:6272:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6271:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_XorRgn':
ncbidrwg.c:6324:16: warning: variable 'ntool3' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool3;
^
ncbidrwg.c:6323:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6322:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_EqualRgn':
ncbidrwg.c:6353:16: warning: variable 'ntool2' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool2;
^
ncbidrwg.c:6352:16: warning: variable 'ntool1' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool1;
^
ncbidrwg.c: In function 'Nlm_EmptyRgn':
ncbidrwg.c:6381:17: warning: variable 'ntool' set but not used [-Wunused-but-set-variable]
Nlm_RgnTool ntool;
^
ncbidrwg.c: In function 'Nlm_CopyPixmap':
ncbidrwg.c:7040:25: warning: variable 'height' set but not used [-Wunused-but-set-variable]
Nlm_Int2 height;
^
ncbidrwg.c:7039:25: warning: variable 'width' set but not used [-Wunused-but-set-variable]
Nlm_Int2 width;
^
ncbidrwg.c: In function 'Nlm_GetColorRGB':
ncbidrwg.c:1373:3: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
return (Nlm_Uint4)i;
^
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF algorend.c
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
Int2 rsult = 0;
^
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
^
algorend.c: In function 'RenderObject':
algorend.c:3135:25: warning: variable 'fZTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3135:19: warning: variable 'fYTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3135:13: warning: variable 'fXTo' set but not used [-Wunused-but-set-variable]
FloatLo fXTo, fYTo, fZTo;
^
algorend.c:3134:29: warning: variable 'fZFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c:3134:21: warning: variable 'fYFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c:3134:13: warning: variable 'fXFrom' set but not used [-Wunused-but-set-variable]
FloatLo fXFrom, fYFrom, fZFrom;
^
algorend.c: In function 'RenderLabel':
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent;
^
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
PMAD pmad0, pmad1, pmad2, pmad3;
^
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
PMAD pmadFrom = NULL;
^
algorend.c:3757:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
int iMenu;
^
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
Byte bReservedThis = 0;
^
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
PMBD pmbdThis = NULL;
^
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
PDNMM pdnmmThis = NULL;
^
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
Int2 i = 0;
^
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
Int2 Cn3d_LayerNow_sofar = 0;
^
algorend.c: In function 'Do3DOrigin':
algorend.c:5756:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c:5751:13: warning: variable 'fTo' set but not used [-Wunused-but-set-variable]
FloatLo fTo[3];
^
algorend.c:5750:13: warning: variable 'fFrom' set but not used [-Wunused-but-set-variable]
FloatLo fFrom[3];
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
static Boolean Cn3d_CopyToNode = FALSE;
^
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
static void LabelGroupOnOffProc(GrouP g)
^
algorend.c: In function 'RenderLabel':
algorend.c:3493:14: warning: 'iX' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddText3D(pic, (Segment3D) paldPrim->pGraphic, (BigScalar) 0,
^
algorend.c:3493:14: warning: 'iY' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3493:14: warning: 'iZ' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fZCen += fZt / l;
^
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYCen += fYt / l;
^
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXCen += fXt / l;
^
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c: In function 'MasterChangeRenderProc.isra.1':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
pars->SolventRender = k;
^
algorend.c: In function 'RenderObject':
algorend.c:3260:22: warning: 'iXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddCylinder3D(pic, NULL, (BigScalar) pmodThis,
^
algorend.c:3260:22: warning: 'iYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:3260:22: warning: 'iZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c: In function 'Do3DOrigin':
algorend.c:5792:18: warning: 'iXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
AddLine3D(p3d, NULL, (BigScalar) 0, Cn3d_LayerNow,
^
algorend.c:5792:18: warning: 'iYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
algorend.c:5792:18: warning: 'iZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
Int4 iBioseq = 0;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
BiostrucAlignSeqPtr pbsasThis = NULL;
^
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from cn3dopen.c:413:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
static WindoW Cn3D_wOpen;
^
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bOpenBrowse;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(am_guess_numrows(salp) > 2) return sap;
^
cn3dopen.c:513:15: note: 'salp' was declared here
SeqAlign *salp;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr pbsfThis;
^
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdSlave = NULL, pmsdMaster = NULL;
^
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
Boolean iCn3d = TRUE, FirstSlave = FALSE;
^
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from cn3dsave.c:165:0:
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnmime.h12";
^
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dsave.c:171:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bFeatOn;
^
cn3dsave.c: In function 'Cn3D_GetSubSet.isra.1':
cn3dsave.c:289:24: warning: 'isep' may be used uninitialized in this function [-Wmaybe-uninitialized]
isep->next = SeqEntryNew();
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 */
^
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Viewer3DViewer':
cn3dwin.c:1784:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
Int2 iCount = 0;
^
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
PMMD pmmdThis = NULL;
^
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp = NULL;
^
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iLabelCtrl = NULL;
^
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iModelCtrl = NULL;
^
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
static void Cn3D_ZoomCB(IteM i)
^
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
static void Cn3D_MoveCB(IteM i)
^
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
static void HLatom_MA(MAPtr ma,
^
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
static void HLmolecule_MA(MAPtr ma,
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omudp = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
^
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
Byte MainAtom = 0;
^
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
PALD paldThis = NULL;
^
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
PVNAL pvnalThis = NULL;
^
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
PMAD pmadThis = NULL;
^
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
PDNMG pdnmgThis = NULL;
^
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
PMGD pmgd = NULL;
^
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
SeqIdPtr sipThis = NULL;
^
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
PVNMO pvnmoThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
PARS parsThis = NULL;
^
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
^
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
Int4 val = 0;
^
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
PrompT ppt12, ppt13, ppt14;
^
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
^
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
Int2 iMol = 0, iMolCurrent = 0;
^
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
PDNMM pdnmmHead = NULL;
^
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
static PopuP Cn3D_pupModelStyleItem;
^
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
static ButtoN bResetFeatureTitle;
^
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
^
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wmaybe-uninitialized]
rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from seqcons.c:115:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from seqcons.c:116:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
algorend.c: In function 'Cn3D_SetOGLFont':
algorend.c:791:24: warning: unused variable 'currentUnderlined' [-Wunused-variable]
currentUnderlined = FALSE;
^
algorend.c:790:45: warning: unused variable 'currentItalic' [-Wunused-variable]
static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
^
algorend.c:790:24: warning: unused variable 'currentBold' [-Wunused-variable]
static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
^
algorend.c:789:40: warning: unused variable 'currentSize' [-Wunused-variable]
static Nlm_Int2 currentIndex = -1, currentSize = -1;
^
algorend.c:789:21: warning: unused variable 'currentIndex' [-Wunused-variable]
static Nlm_Int2 currentIndex = -1, currentSize = -1;
^
algorend.c: In function 'ColorFromSS':
algorend.c:893:10: warning: unused variable 'rsult' [-Wunused-variable]
Int2 rsult = 0;
^
algorend.c: In function 'Cn3D_RenWire':
algorend.c:1400:10: warning: unused variable 'pmldThis' [-Wunused-variable]
PMLD pmldThis = NULL;
^
algorend.c:1399:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
algorend.c:1398:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
algorend.c: In function 'Cn3D_ColSeqCons':
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
^
algorend.c: In function 'MasterChangeLabelsProc':
algorend.c:2075:44: warning: unused variable 'TopOn' [-Wunused-variable]
Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
^
algorend.c:2073:13: warning: unused variable 'k' [-Wunused-variable]
Int2 i, k, nameval;
^
algorend.c: In function 'ResetLabelCtrls':
algorend.c:2272:25: warning: variable 'size' set but not used [-Wunused-but-set-variable]
Int2 i, val, style, size, termStyle;
^
algorend.c: In function 'LabelControls':
algorend.c:2434:19: warning: variable 'ppt11' set but not used [-Wunused-but-set-variable]
PrompT ppt10, ppt11;
^
algorend.c:2431:36: warning: unused variable 'ppt7' [-Wunused-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
^
algorend.c: In function 'Cn3D_SetQualityFromAppParams':
algorend.c:2649:9: warning: unused variable 'i' [-Wunused-variable]
int i;
^
algorend.c: In function 'OGL_Quality':
algorend.c:2769:23: warning: unused variable 'q' [-Wunused-variable]
Nlm_PrompT bp, p, q;
^
algorend.c:2769:20: warning: variable 'p' set but not used [-Wunused-but-set-variable]
Nlm_PrompT bp, p, q;
^
algorend.c:2769:16: warning: variable 'bp' set but not used [-Wunused-but-set-variable]
Nlm_PrompT bp, p, q;
^
algorend.c: In function 'RenderControls':
algorend.c:2893:12: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt5;
^
algorend.c: In function 'RenderObject':
algorend.c:3138:10: warning: unused variable 'iCylRadius' [-Wunused-variable]
Int4 iCylRadius;
^
algorend.c:3137:22: warning: unused variable 'iZTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3137:16: warning: unused variable 'iYTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3137:10: warning: unused variable 'iXTo' [-Wunused-variable]
Int4 iXTo, iYTo, iZTo;
^
algorend.c:3136:26: warning: unused variable 'iZFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3136:18: warning: unused variable 'iYFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3136:10: warning: unused variable 'iXFrom' [-Wunused-variable]
Int4 iXFrom, iYFrom, iZFrom;
^
algorend.c:3133:10: warning: unused variable 'i' [-Wunused-variable]
Int4 i = 0;
^
algorend.c: In function 'RenderLabel':
algorend.c:3394:10: warning: variable 'paldPrim' set but not used [-Wunused-but-set-variable]
PALD paldPrim = NULL;
^
algorend.c:3393:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
algorend.c:3389:18: warning: unused variable 'iZ' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c:3389:14: warning: unused variable 'iY' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c:3389:10: warning: unused variable 'iX' [-Wunused-variable]
Int4 iX, iY, iZ;
^
algorend.c: In function 'RenderBond':
algorend.c:3554:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent = NULL;
^
algorend.c: In function 'RenderHalfWormBond':
algorend.c:3673:10: warning: variable 'pmsdParent' set but not used [-Wunused-but-set-variable]
PMSD pmsdParent;
^
algorend.c:3671:24: warning: variable 'pmad2' set but not used [-Wunused-but-set-variable]
PMAD pmad0, pmad1, pmad2, pmad3;
^
algorend.c: In function 'RenderAnAtom':
algorend.c:3758:10: warning: unused variable 'pmadFrom' [-Wunused-variable]
PMAD pmadFrom = NULL;
^
algorend.c: In function 'RenderAllAtom':
algorend.c:3829:9: warning: variable 'iMenu' set but not used [-Wunused-but-set-variable]
int iMenu;
^
algorend.c:3815:11: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c:3811:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
algorend.c: In function 'RenderGraph':
algorend.c:4498:10: warning: unused variable 'bReservedThis' [-Wunused-variable]
Byte bReservedThis = 0;
^
algorend.c: In function 'LabelChainTermini':
algorend.c:4772:14: warning: unused variable 'pmbdThis' [-Wunused-variable]
PMBD pmbdThis = NULL;
^
algorend.c:4771:15: warning: unused variable 'pvnmbThis' [-Wunused-variable]
PVNMB pvnmbThis = NULL;
^
algorend.c: In function 'RenderMolecule':
algorend.c:4871:11: warning: variable 'pdnmmThis' set but not used [-Wunused-but-set-variable]
PDNMM pdnmmThis = NULL;
^
algorend.c: In function 'fnARLoop':
algorend.c:5556:10: warning: variable 'iTest' set but not used [-Wunused-but-set-variable]
Int2 iTest;
^
algorend.c: In function 'AlgorithmicRendering':
algorend.c:5684:10: warning: unused variable 'i' [-Wunused-variable]
Int2 i = 0;
^
algorend.c:5683:10: warning: unused variable 'Cn3d_LayerNow_sofar' [-Wunused-variable]
Int2 Cn3d_LayerNow_sofar = 0;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
algorend.c:717:16: warning: 'Cn3d_CopyToNode' defined but not used [-Wunused-variable]
static Boolean Cn3d_CopyToNode = FALSE;
^
algorend.c:2265:13: warning: 'LabelGroupOnOffProc' defined but not used [-Wunused-function]
static void LabelGroupOnOffProc(GrouP g)
^
algorend.c: In function 'MasterChangeRenderProc':
algorend.c:1316:33: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
pars->SolventRender = k;
^
algorend.c: In function 'RenderLabel':
algorend.c:3448:15: warning: 'fZCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fZCen += fZt / l;
^
algorend.c:3447:15: warning: 'fYCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYCen += fYt / l;
^
algorend.c:3446:15: warning: 'fXCen' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXCen += fXt / l;
^
algorend.c:3449:41: warning: 'fZTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:77: warning: 'fYTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:41: warning: 'fXTo' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
algorend.c:3449:58: warning: 'fZFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3449:22: warning: 'fYFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
^
algorend.c:3450:58: warning: 'fXFrom' may be used uninitialized in this function [-Wmaybe-uninitialized]
fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
^
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
cn3dopen.c: In function 'Cn3D_OpenStart':
cn3dopen.c:722:10: warning: unused variable 'iBioseq' [-Wunused-variable]
Int4 iBioseq = 0;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:1000:19: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dopen.c:989:25: warning: unused variable 'pbsasThis' [-Wunused-variable]
BiostrucAlignSeqPtr pbsasThis = NULL;
^
cn3dopen.c: In function 'Cn3D_NetOpenBiostruc':
cn3dopen.c:1310:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from cn3dopen.c:413:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
cn3dopen.c:430:15: warning: 'Cn3D_wOpen' defined but not used [-Wunused-variable]
static WindoW Cn3D_wOpen;
^
cn3dopen.c:431:15: warning: 'Cn3D_bOpenBrowse' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bOpenBrowse;
^
cn3dopen.c: In function 'MMDB_ReadMime':
cn3dopen.c:528:28: warning: 'salp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if(am_guess_numrows(salp) > 2) return sap;
^
cn3dopen.c:513:15: note: 'salp' was declared here
SeqAlign *salp;
^
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
cn3dsave.c: In function 'Cn3D_AddMatrix':
cn3dsave.c:206:41: warning: unused variable 'bsfsp_new' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportAsnNow':
cn3dsave.c:375:11: warning: unused variable 'pdnmlThis' [-Wunused-variable]
PDNML pdnmlThis = NULL;
^
cn3dsave.c:372:24: warning: variable 'pbsfThis' set but not used [-Wunused-but-set-variable]
BiostrucFeaturePtr pbsfThis;
^
cn3dsave.c:366:10: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdSlave = NULL, pmsdMaster = NULL;
^
cn3dsave.c:362:27: warning: variable 'FirstSlave' set but not used [-Wunused-but-set-variable]
Boolean iCn3d = TRUE, FirstSlave = FALSE;
^
cn3dsave.c:357:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveBiostruc':
cn3dsave.c:524:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:523:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dsave.c:518:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_ExportDictNow':
cn3dsave.c:598:13: warning: unused variable 'pcSave' [-Wunused-variable]
CharPtr pcSave = NULL;
^
cn3dsave.c:596:10: warning: unused variable 'iCount' [-Wunused-variable]
Int4 iCount = 0;
^
cn3dsave.c: In function 'Cn3D_SaveDictionary':
cn3dsave.c:629:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dsave.c:624:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dsave.c: In function 'Cn3D_SaveSub':
cn3dsave.c:688:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
In file included from cn3dsave.c:165:0:
cn3dsave.c: At top level:
../include/asnmime.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnmime.h12";
^
../include/asnmime.h:117:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/asnmime.h:118:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnmime.h:119:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dsave.c:171:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dsave.c:184:15: warning: 'Cn3D_bFeatOn' defined but not used [-Wunused-variable]
static ButtoN Cn3D_bFeatOn;
^
cn3dsave.c: In function 'Cn3D_GetSubSet.isra.1':
cn3dsave.c:289:24: warning: 'isep' may be used uninitialized in this function [-Wmaybe-uninitialized]
isep->next = SeqEntryNew();
^
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
cn3dxprt.c: In function 'Cn3D_ExportPDB':
cn3dxprt.c:209:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:208:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:203:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportKin':
cn3dxprt.c:381:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
cn3dxprt.c:380:11: warning: variable 'gMS' set but not used [-Wunused-but-set-variable]
GrouP gMS;
^
cn3dxprt.c:375:10: warning: variable 'pmsdThis' set but not used [-Wunused-but-set-variable]
PMSD pmsdThis = NULL;
^
cn3dxprt.c: In function 'Cn3D_ExportSub':
cn3dxprt.c:513:10: warning: variable 'i' set but not used [-Wunused-but-set-variable]
IteM i;
^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
cn3dwin.c:734:3: warning: missing braces around initializer [-Wmissing-braces]
255, 255, 255, /* default 0 */
^
cn3dwin.c:734:3: warning: (near initialization for 'Cn3d_PaletteRGB[0]') [-Wmissing-braces]
cn3dwin.c: In function 'Cn3D_Default_HLColor':
cn3dwin.c:982:27: warning: variable 'colorB' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c:982:19: warning: variable 'colorG' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c:982:11: warning: variable 'colorR' set but not used [-Wunused-but-set-variable]
Uint1 colorR, colorG, colorB;
^
cn3dwin.c: In function 'Cn3D_RedrawEx':
cn3dwin.c:1251:19: warning: unused variable 'iColor' [-Wunused-variable]
DDV_ColorCell iColor;
^
cn3dwin.c: In function 'fnPreCHLresidue':
cn3dwin.c:1543:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dwin.c: In function 'Viewer3DGroups':
cn3dwin.c:1728:10: warning: unused variable 'groups' [-Wunused-variable]
Int2 groups = 0;
^
cn3dwin.c: In function 'Cn3D_AlignEdit':
cn3dwin.c:1936:10: warning: unused variable 'iCount' [-Wunused-variable]
Int2 iCount = 0;
^
cn3dwin.c:1935:10: warning: variable 'pmmdThis' set but not used [-Wunused-but-set-variable]
PMMD pmmdThis = NULL;
^
cn3dwin.c:1933:17: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp = NULL;
^
cn3dwin.c:1931:29: warning: variable 'pmsdSlave' set but not used [-Wunused-but-set-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dwin.c:1930:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave = NULL;
^
cn3dwin.c: In function 'Cn3DWin':
cn3dwin.c:2364:5: warning: implicit declaration of function 'Nlm_SetOGLContext' [-Wimplicit-function-declaration]
Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
^
In file included from ../include/sqnutils.h:51:0,
from ../include/udviewer.h:219,
from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/udviewer.h:228,
from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
cn3dwin.c:676:14: warning: 'Cn3D_Vy' defined but not used [-Wunused-variable]
static Uint2 Cn3D_Vy, Cn3D_Rx;
^
cn3dwin.c:682:13: warning: 'Cn3D_iLabelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iLabelCtrl = NULL;
^
cn3dwin.c:688:13: warning: 'Cn3D_iModelCtrl' defined but not used [-Wunused-variable]
static IteM Cn3D_iModelCtrl = NULL;
^
cn3dwin.c:713:14: warning: 'Cn3D_gViewer' defined but not used [-Wunused-variable]
static GrouP Cn3D_gViewer;
^
cn3dwin.c:719:14: warning: 'Cn3D_gViewCtrl' defined but not used [-Wunused-variable]
static GrouP Cn3D_gViewCtrl;
^
cn3dwin.c:922:13: warning: 'Cn3D_ZoomCB' defined but not used [-Wunused-function]
static void Cn3D_ZoomCB(IteM i)
^
cn3dwin.c:929:13: warning: 'Cn3D_MoveCB' defined but not used [-Wunused-function]
static void Cn3D_MoveCB(IteM i)
^
cn3dwin.c:936:13: warning: 'Cn3D_Default_BgColor' defined but not used [-Wunused-function]
static void Cn3D_Default_BgColor(IteM i)
^
cn3dwin.c:953:13: warning: 'Cn3D_BgColor' defined but not used [-Wunused-function]
static void Cn3D_BgColor(IteM i)
^
cn3dwin.c:979:13: warning: 'Cn3D_Default_HLColor' defined but not used [-Wunused-function]
static void Cn3D_Default_HLColor(IteM i)
^
cn3dwin.c:1349:25: warning: 'DoHighlightSeg' defined but not used [-Wunused-function]
static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
^
cn3dwin.c:1428:13: warning: 'HLatom_MA' defined but not used [-Wunused-function]
static void HLatom_MA(MAPtr ma,
^
cn3dwin.c:1626:13: warning: 'HLmolecule_MA' defined but not used [-Wunused-function]
static void HLmolecule_MA(MAPtr ma,
^
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
cn3dmsg.c: In function 'SeqStrucMediaMsgFunc':
cn3dmsg.c:593:19: warning: variable 'omudp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omudp = NULL;
^
In file included from ../include/sqnutils.h:51:0,
from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
cn3dmatn.c: In function 'FindMM':
cn3dmatn.c:217:29: warning: unused variable 'pdnmsThisSlave' [-Wunused-variable]
PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
^
cn3dmatn.c: In function 'DoMediaHL':
cn3dmatn.c:249:10: warning: variable 'MainAtom' set but not used [-Wunused-but-set-variable]
Byte MainAtom = 0;
^
cn3dmatn.c:247:10: warning: unused variable 'paldThis' [-Wunused-variable]
PALD paldThis = NULL;
^
cn3dmatn.c:246:11: warning: unused variable 'pvnalThis' [-Wunused-variable]
PVNAL pvnalThis = NULL;
^
cn3dmatn.c:245:10: warning: unused variable 'pmadThis' [-Wunused-variable]
PMAD pmadThis = NULL;
^
cn3dmatn.c:244:11: warning: unused variable 'pvnmaThis' [-Wunused-variable]
PVNMA pvnmaThis = NULL;
^
cn3dmatn.c: In function 'Cn3DCheckAndDoHighlight':
cn3dmatn.c:372:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmatn.c:371:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
cn3dmodl.c: In function 'Cn3DCheckNoSingleHighlight':
cn3dmodl.c:353:11: warning: unused variable 'pdnmgThis' [-Wunused-variable]
PDNMG pdnmgThis = NULL;
^
cn3dmodl.c: In function 'Cn3DCheckHighlighted':
cn3dmodl.c:364:29: warning: unused variable 'pmsdSlave' [-Wunused-variable]
PMSD pmsdMaster = NULL, pmsdSlave = NULL;
^
cn3dmodl.c: In function 'Cn3D_ReSetVisibleStatus':
cn3dmodl.c:508:10: warning: unused variable 'pmgd' [-Wunused-variable]
PMGD pmgd = NULL;
^
cn3dmodl.c:507:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:506:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'fnAlignList':
cn3dmodl.c:996:25: warning: unused variable 'itemtype' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:996:11: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 entityID = 0, itemtype = 0;
^
cn3dmodl.c:995:14: warning: unused variable 'sipThis' [-Wunused-variable]
SeqIdPtr sipThis = NULL;
^
cn3dmodl.c:993:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SynchronizeModVisibleStatus':
cn3dmodl.c:1065:11: warning: unused variable 'pdnmg' [-Wunused-variable]
PDNMG pdnmg = NULL;
^
cn3dmodl.c:1064:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dmodl.c: In function 'SetResidueVisibilities':
cn3dmodl.c:1201:11: warning: unused variable 'pvnmoThis' [-Wunused-variable]
PVNMO pvnmoThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
cn3dshim.c: In function 'Cn3D_Size':
cn3dshim.c:413:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis;
^
cn3dshim.c:412:11: warning: unused variable 'pdnmsSlave' [-Wunused-variable]
PDNMS pdnmsSlave;
^
cn3dshim.c: In function 'Cn3D_SizeCB':
cn3dshim.c:391:36: warning: iteration 2u invokes undefined behavior [-Waggressive-loop-optimizations]
BoundBox->x[i] = pflvDataThis[i / (int) 2];
^
cn3dshim.c:390:17: note: containing loop
for (i = 0; i < 6; i++) {
^
cn3dshim.c:396:69: warning: iteration 1u invokes undefined behavior [-Waggressive-loop-optimizations]
if (pflvDataThis[i / (Nlm_Int4) 2] < BoundBox->x[i])
^
cn3dshim.c:395:17: note: containing loop
for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
^
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
cn3dmesh.c: In function 'Cn3D_MeshAcceptProc':
cn3dmesh.c:103:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
cn3dmesh.c: In function 'Cn3D_OpenMesh':
cn3dmesh.c:151:12: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
cn3dstyl.c: In function 'GetThisSpecialAlgorRenderSet':
cn3dstyl.c:459:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'GetSpecialAlgorRenderSet':
cn3dstyl.c:641:10: warning: unused variable 'parsThis' [-Wunused-variable]
PARS parsThis = NULL;
^
cn3dstyl.c:640:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ChangeSpecialLabelsProc':
cn3dstyl.c:867:16: warning: unused variable 'TopOn' [-Wunused-variable]
FALSE, TopOn = FALSE;
^
cn3dstyl.c:866:44: warning: unused variable 'PDBOn' [-Wunused-variable]
Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
^
cn3dstyl.c:864:17: warning: unused variable 'k' [-Wunused-variable]
Int2 i = 0, k = 0, nameval = 0;
^
cn3dstyl.c: In function 'ModelSetLabelCtrls':
cn3dstyl.c:1059:37: warning: variable 'size' set but not used [-Wunused-but-set-variable]
Int2 i = 0, val = 0, style = 0, size = 0;
^
cn3dstyl.c: In function 'lFeatureEditedAction':
cn3dstyl.c:1136:10: warning: unused variable 'val' [-Wunused-variable]
Int4 val = 0;
^
cn3dstyl.c: In function 'bFeatureMoveAction':
cn3dstyl.c:1153:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'bFeatureEditAction':
cn3dstyl.c:1176:23: warning: unused variable 'sfpThis' [-Wunused-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c: In function 'ModelControls':
cn3dstyl.c:1364:19: warning: variable 'ppt13' set but not used [-Wunused-but-set-variable]
PrompT ppt12, ppt13, ppt14;
^
cn3dstyl.c:1363:9: warning: unused variable 'ppt11' [-Wunused-variable]
ppt11;
^
cn3dstyl.c:1362:60: warning: unused variable 'ppt9' [-Wunused-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:36: warning: variable 'ppt5' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c:1362:12: warning: variable 'ppt1' set but not used [-Wunused-but-set-variable]
PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
^
cn3dstyl.c: In function 'GetBiostrucFeatureLocationForHihglightedResidues':
cn3dstyl.c:1728:30: warning: variable 'SingleInterval' set but not used [-Wunused-but-set-variable]
Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
^
cn3dstyl.c:1725:20: warning: variable 'iMolCurrent' set but not used [-Wunused-but-set-variable]
Int2 iMol = 0, iMolCurrent = 0;
^
cn3dstyl.c: In function 'MakeBiostrucFeatureSetForUserDefinedFeature':
cn3dstyl.c:2122:60: warning: unused variable 'bsfsp_tail' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c:2122:41: warning: unused variable 'bsfsp_head' [-Wunused-variable]
BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
^
cn3dstyl.c: In function 'GetUserDefinedFeature':
cn3dstyl.c:2196:27: warning: unused variable 'sfipThis' [-Wunused-variable]
SpecialFeatureInfoPtr sfipThis = NULL;
^
cn3dstyl.c: In function 'Cn3DIndexUserDefinedFeature':
cn3dstyl.c:2551:23: warning: variable 'sfpThis' set but not used [-Wunused-but-set-variable]
SpecialFeaturePtr sfpThis = NULL;
^
cn3dstyl.c:2549:10: warning: unused variable 'pmmdThis' [-Wunused-variable]
PMMD pmmdThis = NULL;
^
cn3dstyl.c:2548:11: warning: unused variable 'pdnmmHead' [-Wunused-variable]
PDNMM pdnmmHead = NULL;
^
cn3dstyl.c:2547:10: warning: unused variable 'pmsdThis' [-Wunused-variable]
PMSD pmsdThis = NULL;
^
In file included from ../include/cn3dopen.h:111:0,
from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
cn3dstyl.c:144:14: warning: 'Cn3D_pupModelStyleItem' defined but not used [-Wunused-variable]
static PopuP Cn3D_pupModelStyleItem;
^
cn3dstyl.c:149:15: warning: 'bResetFeatureTitle' defined but not used [-Wunused-variable]
static ButtoN bResetFeatureTitle;
^
cn3dstyl.c:456:30: warning: 'GetThisSpecialAlgorRenderSet' defined but not used [-Wunused-function]
static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
^
cn3dstyl.c: In function 'CopyLocation':
cn3dstyl.c:496:27: warning: 'rsipNewHead' may be used uninitialized in this function [-Wmaybe-uninitialized]
rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
^
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from seqcons.c:115:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from seqcons.c:116:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
seqcons.c: In function 'CSC_Algorithm_ByBlosum62':
seqcons.c:402:43: warning: 'minScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
seqcons.c:402:67: warning: 'maxScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
^
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_engine.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_extend.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_filter.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_hits.c
blast_hits.c: In function 'Blast_HSPResultsFromHSPStreamWithLimitEx':
blast_hits.c:3499:13: warning: variable 'rm_hsps' set but not used [-Wunused-but-set-variable]
Boolean rm_hsps = FALSE;
^
blast_hits.c: At top level:
blast_hits.c:3212:12: warning: 's_SortHspWrapEvalue' defined but not used [-Wunused-function]
static int s_SortHspWrapEvalue(const void *x, const void *y)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_itree.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_message.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_options.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_seg.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_sw.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_setup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_stat.c
blast_stat.c: In function 's_BlastGumbelBlkNew':
blast_stat.c:818:21: warning: unused variable 'retv' [-Wunused-variable]
Blast_GumbelBlk* retv;
^
blast_stat.c: At top level:
blast_stat.c:5081:15: warning: 's_CalculateNormalProbability' defined but not used [-Wunused-function]
static double s_CalculateNormalProbability(double x_, double eps_)
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function 'Blast_TracebackFromHSPList':
blast_traceback.c:393:38: warning: 'qe' may be used uninitialized in this function [-Wmaybe-uninitialized]
Blast_HSPInit(qs, qe, ss, se, qs, ss,
^
blast_traceback.c:365:22: note: 'qe' was declared here
Int4 qs, qe, ss, se, es, ee, os;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_util.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gapinfo.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF greedy_align.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF link_hsps.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF pattern.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF phi_extend.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF lookup_util.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_psi.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_posit.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_program.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_tune.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF split_query.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_api.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_input.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_format.c
blast_format.c: In function 's_MBXmlInit':
blast_format.c:255:13: warning: variable 'retval' set but not used [-Wunused-but-set-variable]
Boolean retval = FALSE;
^
blast_format.c: In function 's_LoadMatrix':
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
^
blast_format.c:673:18: warning: array subscript has type 'char' [-Wchar-subscripts]
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function 'Blast_PrelimSearchThreadRun':
blast_prelim.c:100:9: warning: variable 'status' set but not used [-Wunused-but-set-variable]
Int2 status = 0;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_returns.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_seq.c
blast_seq.c: In function 's_SeqLocFillSequenceBuffer':
blast_seq.c:529:10: warning: variable 'seq_code' set but not used [-Wunused-but-set-variable]
Uint1 seq_code, strand;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
blast_seqalign.c: In function 's_HSPListToSeqAlignUngapped':
blast_seqalign.c:343:26: warning: variable 'hspset_cnt_old' set but not used [-Wunused-but-set-variable]
Int4 hsp_cnt, index2, hspset_cnt_old;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
seqsrc_readdb.c: In function 's_ReaddbGetNextChunk':
seqsrc_readdb.c:375:11: warning: variable 'real_readdb_entries' set but not used [-Wunused-but-set-variable]
Uint4 real_readdb_entries;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function 's_TwoSeqBasicFillOptions':
twoseq_api.c:100:10: warning: unused variable 'status' [-Wunused-variable]
Int2 status = 0;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/algo/blast/api/twoseq_api.h:41,
from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF dust_filter.c
dust_filter.c: In function 's_GetFilteringLocations':
dust_filter.c:171:32: warning: unused variable 'filter_slp_rev' [-Wunused-variable]
BlastSeqLoc* filter_slp_rev = NULL;
^
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
gcc -c -g -O2 -Wall -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
hspfilter_queue.c: In function 's_BlastHSPQueueInit':
hspfilter_queue.c:65:24: warning: unused variable 'q_data' [-Wunused-variable]
BlastHSPQueueData * q_data = data;
^
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
gcc -o asntool -g -O2 -Wall -I../include -DWIN_MOTIF -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
asncode.c: In function 'AsnCode_SETOF_base_or_user':
asncode.c:1518:20: warning: variable 'real_type' set but not used [-Wunused-but-set-variable]
Int2 real_type;
^
asncode.c:1517:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
CharPtr valslot;
^
asncode.c: In function 'userobj_and_basetype_SETOF':
asncode.c:2472:20: warning: variable 'valslot' set but not used [-Wunused-but-set-variable]
CharPtr valslot;
^
asncode.c: In function 'AsnCodeIsReallyChoice':
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (now_atp)
^
asncode.c: In function 'AsnCodeFunctionWriteFuncChoiceStart':
asncode.c:3623:20: warning: variable 'obj_use' set but not used [-Wunused-but-set-variable]
CharPtr obj_use = which_node->obj_name;
^
asncode.c: In function 'AsnCodeIter':
asncode.c:4237:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (iter->atp != NULL)
^
asncode.c: In function 'AsnCode':
asncode.c:4316:48: warning: variable 'objnamety' set but not used [-Wunused-but-set-variable]
CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
^
asncode.c: At top level:
asncode.c:286:17: warning: 'defptr' defined but not used [-Wunused-variable]
static CharPtr defptr = "ASNCODE_PTRVAL_SLOT";
^
asncode.c:288:17: warning: 'defbigint' defined but not used [-Wunused-variable]
static CharPtr defbigint = "ASNCODE_BIGINTVAL_SLOT";
^
asncode.c:289:17: warning: 'defreal' defined but not used [-Wunused-variable]
static CharPtr defreal = "ASNCODE_REALVAL_SLOT";
^
asncode.c:290:17: warning: 'defbool' defined but not used [-Wunused-variable]
static CharPtr defbool = "ASNCODE_BOOLVAL_SLOT";
^
asncode.c:291:17: warning: 'defbyte' defined but not used [-Wunused-variable]
static CharPtr defbyte = "ASNCODE_BYTEVAL_SLOT";
^
cp -p asntool ../bin
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall " VIBLIBS= VIBFLAG= LIB50=-lpcre
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc -o testcore -g -O2 -Wall -I../include -L../shlib testcore.c -lncbi -lm
testcore.c:337:13: warning: 'TestStrings' defined but not used [-Wunused-function]
static void TestStrings (void)
^
gcc -o makeset -g -O2 -Wall -I../include -L../shlib makeset.c -lncbi
In file included from makeset.c:9:0:
../include/all.h:7192:0: warning: "RNA_QUAL" redefined [enabled by default]
#define RNA_QUAL &at[2231]
^
../include/all.h:5745:0: note: this is the location of the previous definition
#define RNA_QUAL &at[1023]
^
makeset.c: In function 'Nlm_Main':
makeset.c:27:26: warning: unused variable 'uid' [-Wunused-variable]
Int4 seekptr, tempseek, uid;
^
makeset.c:27:16: warning: unused variable 'tempseek' [-Wunused-variable]
Int4 seekptr, tempseek, uid;
^
makeset.c:27:7: warning: unused variable 'seekptr' [-Wunused-variable]
Int4 seekptr, tempseek, uid;
^
gcc -o getmesh -g -O2 -Wall -I../include -L../shlib getmesh.c -lncbi
gcc -o indexpub -g -O2 -Wall -I../include -L../shlib indexpub.c -lncbi
indexpub.c: In function 'Nlm_Main':
indexpub.c:60:11: warning: 'seekptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
fprintf(fp, "%d %d\n", uid, seekptr);
^
gcc -o getpub -g -O2 -Wall -I../include -L../shlib getpub.c -lncbi
gcc -o testobj -g -O2 -Wall -I../include -L../shlib testobj.c -lncbiobj -lncbi -lm
gcc -o seqtest -g -O2 -Wall -I../include -L../shlib seqtest.c -lncbiobj -lncbi -lm
gcc -o dosimple -g -O2 -Wall -I../include -L../shlib dosimple.c -lncbiobj -lncbi -lm
gcc -o asn2ff -g -O2 -Wall -I../include -L../shlib asn2ff.c -lncbiobj -lncbi
asn2ff.c: In function 'Nlm_Main':
asn2ff.c:129:10: warning: unused variable 'good' [-Wunused-variable]
Boolean good = FALSE;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from asn2ff.c:9:
asn2ff.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asn2ff.c: In function 'Nlm_Main':
asn2ff.c:405:13: warning: 'atp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
the_set = SeqEntryAsnRead(aip, atp);
^
asn2ff.c:352:9: warning: 'atp1' may be used uninitialized in this function [-Wmaybe-uninitialized]
ssp = SeqSubmitAsnRead(aip, atp);
^
gcc -o checksub -g -O2 -Wall -I../include -L../shlib checksub.c -lncbiobj -lncbi
gcc -o asndhuff -g -O2 -Wall -I../include -L../shlib asndhuff.c -lncbicdr -lncbiobj -lncbi
asndhuff.c: In function 'do_medline':
asndhuff.c:182:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
^
asndhuff.c: In function 'do_sequence':
asndhuff.c:221:2: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
^
asndhuff.c:200:10: warning: unused variable 'val' [-Wunused-variable]
DataVal val;
^
gcc -o entrcmd -g -O2 -Wall -I../include -L../shlib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
entrcmd.c: In function 'PrintDSPMwww':
entrcmd.c:373:21: warning: unused variable 'lsp' [-Wunused-variable]
LocalLinkSetPtr lsp;
^
entrcmd.c: In function 'PrintDSPNwww':
entrcmd.c:465:21: warning: unused variable 'lsp' [-Wunused-variable]
LocalLinkSetPtr lsp;
^
entrcmd.c: In function 'PrintDSPPwww':
entrcmd.c:569:21: warning: unused variable 'lsp' [-Wunused-variable]
LocalLinkSetPtr lsp;
^
entrcmd.c: In function 'TermProcessing':
entrcmd.c:1297:13: warning: variable 'inclusive' set but not used [-Wunused-but-set-variable]
Boolean inclusive;
^
entrcmd.c:1296:13: warning: variable 'endWithTerm' set but not used [-Wunused-but-set-variable]
Boolean endWithTerm = FALSE;
^
entrcmd.c:1295:13: warning: variable 'beginWithTerm' set but not used [-Wunused-but-set-variable]
Boolean beginWithTerm = FALSE;
^
entrcmd.c: At top level:
entrcmd.c:284:16: warning: 'IsGenBank' defined but not used [-Wunused-function]
static Boolean IsGenBank (SeqEntryPtr sep)
^
entrcmd.c: In function 'LinkSetToLocalLinkSet':
entrcmd.c:212:5: warning: 'lsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return lsp;
^
entrcmd.c: In function 'TermProcessing':
entrcmd.c:1387:43: warning: 'ratio' may be used uninitialized in this function [-Wmaybe-uninitialized]
termsBefore = (Int2) (numTerms / ((float) ratio / 2));
^
entrcmd.c: In function 'Nlm_Main':
entrcmd.c:1548:17: warning: 'db' may be used uninitialized in this function [-Wmaybe-uninitialized]
slp->db = db;
^
entrcmd.c:1476:13: note: 'db' was declared here
DocType db;
^
entrcmd.c:1602:31: warning: 'vector' may be used uninitialized in this function [-Wmaybe-uninitialized]
vector[count] = (Int4) uid;
^
entrcmd.c:1582:13: note: 'vector' was declared here
Int4Ptr vector;
^
entrcmd.c:2207:24: warning: 'neighborFile' may be used uninitialized in this function [-Wmaybe-uninitialized]
neighborFp = FileOpen(neighborFile, "r");
^
entrcmd.c:1447:32: warning: 'taxString' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (StrICmp(ecp->name, taxString) != 0)
^
entrcmd.c:1917:13: note: 'taxString' was declared here
CharPtr taxString;
^
entrcmd.c:2231:23: warning: 'termString' may be used uninitialized in this function [-Wmaybe-uninitialized]
TermProcessing(programStr, termString, db, FALSE);
^
entrcmd.c:2137:12: warning: 'boolString' may be used uninitialized in this function [-Wmaybe-uninitialized]
if ((bsp = EntrezTLEvalXString(boolString, db, -1, NULL, NULL)) != NULL)
^
gcc -o errhdr -g -O2 -Wall -I../include -L../shlib errhdr.c -lncbi
gcc -o cdscan -g -O2 -Wall -I../include -L../shlib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
cdscan.c:133:13: warning: 'root' defined but not used [-Wunused-variable]
static Char root [PATH_MAX];
^
cdscan.c:392:13: warning: 'GenBankPubs' defined but not used [-Wunused-function]
static void GenBankPubs (SeqEntryPtr sep, FILE * fp)
^
cdscan.c:576:13: warning: 'SeqEntryToFeat' defined but not used [-Wunused-function]
static void SeqEntryToFeat (SeqEntryPtr sep, FILE *fp)
^
gcc -o findspl -g -O2 -Wall -I../include -L../shlib findspl.c -lncbiacc -lncbiobj -lncbi
gcc -o ncbisort -g -O2 -Wall -I../include -L../shlib sortcmd.c -lncbitool -lblastcompadj \
-lncbi -lm
gcc -o fa2htgs -g -O2 -Wall -I../include -L../shlib fa2htgs.c -lncbiobj -lncbi
fa2htgs.c: In function 'Nlm_Main':
fa2htgs.c:474:25: warning: 'dsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (dsp != NULL && dsp->choice == 2) {
^
fa2htgs.c:448:16: note: 'dsp' was declared here
DeltaSeqPtr dsp;
^
gcc -o fastacmd -g -O2 -Wall -I../include -L../shlib fastacmd.c -lncbitool -lncbi
gcc -o formatdb -g -O2 -Wall -I../include -L../shlib formatdb.c -lncbitool -lncbiobj -lncbi
In file included from ../include/sqnutils.h:51:0,
from formatdb.c:421:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o formatrpsdb -g -O2 -Wall -I../include -L../shlib formatrpsdb.c -lncbitool \
-lblast -lncbiobj -lncbi
In file included from ../include/sqnutils.h:51:0,
from formatrpsdb.c:145:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
formatrpsdb.c: In function 'RPSUpdateStatistics':
formatrpsdb.c:440:43: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (freq_list != NULL || i < seq_size || j < alphabet_size)
^
formatrpsdb.c: In function 'RPSUpdatePSSM':
formatrpsdb.c:575:27: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (i < seq_size || j < alphabet_size) {
^
gcc -o blastall -g -O2 -Wall -I../include -L../shlib blastall.c -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
Boolean concat_done, nuc_concat;
^
In file included from ../include/sqnutils.h:51:0,
from blastall.c:727:
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_bsp = (num_queries>0) ? *(fake_bsp_arr + bsp_iter) : query_bsp;
^
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*(seq_annot_arr + sap_iter) = seqannot;
^
blastall.c:2609:69: warning: 'sap_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_seqalign = (num_queries>0) ? *(sap_array + sap_iter) : seqalign;
^
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (index=0; index<num_bsps; index++) {
^
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDeleteUserErrorString(err_ticket);
^
blastall.c:2812:33: warning: 'xml_aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
BXMLPrintOutput(xml_aip, NULL, options, blast_program,
^
gcc -o blastpgp -g -O2 -Wall -I../include -L../shlib blastpgp.c -lncbitool \
-lncbiobj -lncbi
blastpgp.c: In function 'PGPFormatFooter':
blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable]
TxDfDbInfoPtr dbinfo=NULL, dbinfo_head;
^
blastpgp.c: In function 'Nlm_Main':
blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable]
Boolean alignCheckpoint = FALSE;
^
In file included from ../include/sqnutils.h:51:0,
from blastpgp.c:561:
blastpgp.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from blastpgp.c:563:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o testval -g -O2 -Wall -I../include -L../shlib testval.c -lncbiobj -lncbi -lm
testval.c: In function 'Nlm_Main':
testval.c:188:9: warning: 'atp2' may be used uninitialized in this function [-Wmaybe-uninitialized]
sep = SeqEntryAsnRead(aip, atp);
^
testval.c:183:9: warning: 'atp' may be used uninitialized in this function [-Wmaybe-uninitialized]
while ((atp = AsnReadId(aip, amp, atp)) != NULL)
^
gcc -o seedtop -g -O2 -Wall -I../include -L../shlib seedtop.c -lncbitool \
-lncbiobj -lncbi
seedtop.c: In function 'Nlm_Main':
seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
&error_returns, &info_vnp,hitArraySz)) {
^
gcc -o makemat -g -O2 -Wall -I../include -L../shlib makemat.c -lncbitool \
-lncbiobj -lncbi
In file included from ../include/sqnutils.h:51:0,
from makemat.c:52:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
makemat.c: In function 'makeMatrixName':
makemat.c:97:15: warning: 'lastc' may be used uninitialized in this function [-Wmaybe-uninitialized]
returnName[lastc] = '.';
^
makemat.c: In function 'Nlm_Main':
makemat.c:437:27: warning: 'sbp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BLAST_ScoreBlkDestruct(sbp);
^
makemat.c:244:23: note: 'sbp' was declared here
BLAST_ScoreBlkPtr sbp;
^
makemat.c:416:24: warning: 'relativeMatrixFileName' may be used uninitialized in this function [-Wmaybe-uninitialized]
MemFree(relativeMatrixFileName);
^
makemat.c:230:29: note: 'relativeMatrixFileName' was declared here
Char * matrixFileName, *relativeMatrixFileName; /*file name for corresponding matrix file*/
^
makemat.c:281:19: warning: 'prefixLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
c1++, c2++)
^
makemat.c:232:10: note: 'prefixLength' was declared here
Int4 prefixLength; /*length of directoryPrefix*/
^
gcc -o copymat -g -O2 -Wall -I../include -L../shlib copymat.c -lblast -lncbitool \
-lncbi
copymat.c: In function 'RPSCreateLookupFile':
copymat.c:622:10: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start, i, header_size, all_length, magicNumber;
^
copymat.c: In function 'Nlm_Main':
copymat.c:387:19: warning: 'prefixLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
c1++, c2++)
^
copymat.c:371:10: note: 'prefixLength' was declared here
Int4 prefixLength; /*length of directoryPrefix*/
^
gcc -o impala -g -O2 -Wall -I../include -L../shlib profiles.c -lncbitool \
-lncbiobj -lncbi -lm
profiles.c: In function 'Nlm_Main':
profiles.c:1430:16: warning: variable 'spp' set but not used [-Wunused-but-set-variable]
SeqPortPtr spp=NULL; /*used for filtering*/
^
In file included from ../include/sqnutils.h:51:0,
from profiles.c:105:
profiles.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
profiles.c: In function 'findMatchingProfiles':
profiles.c:252:25: warning: 'query' may be used uninitialized in this function [-Wmaybe-uninitialized]
query[c] = ResToInt((Char) query[c]);
^
profiles.c:192:11: note: 'query' was declared here
Uint1 * query; /*sequence read in*/
^
profiles.c:1251:27: warning: 'subject_id' may be used uninitialized in this function [-Wmaybe-uninitialized]
newSW->subject_id = subject_id;
^
profiles.c:1244:22: warning: 'bestScore' may be used uninitialized in this function [-Wmaybe-uninitialized]
newSW->score = bestScore;
^
profiles.c:1246:23: warning: 'bestEvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
newSW->eValue = bestEvalue;
^
profiles.c:1108:13: warning: 'prefixLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
c1++, c2++)
^
profiles.c: In function 'Nlm_Main':
profiles.c:1769:16: warning: 'txmatrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
txmatrix = TxMatrixDestruct(txmatrix);
^
profiles.c:1767:11: warning: 'matrix' may be used uninitialized in this function [-Wmaybe-uninitialized]
matrix = BLAST_MatrixDestruct(matrix);
^
profiles.c:1775:11: warning: 'search' may be used uninitialized in this function [-Wmaybe-uninitialized]
search = BlastSearchBlkDestruct(search);
^
profiles.c:1761:21: warning: 'options' may be used uninitialized in this function [-Wmaybe-uninitialized]
printDemographics(proDemographics,outfp, options->expect_value);
^
profiles.c:1779:25: warning: 'fake_bsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
fake_bsp->length = 0;
^
profiles.c:1746:14: warning: 'prune' may be used uninitialized in this function [-Wmaybe-uninitialized]
prune = BlastPruneSapStructDestruct(prune);
^
gcc -o megablast -g -O2 -Wall -I../include -L../shlib megablast.c -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi
megablast.c: In function 'BLAST_FillOptions':
megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable]
Int4 windows = 0;
^
In file included from ../include/sqnutils.h:51:0,
from megablast.c:661:
megablast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o vecscreen -g -O2 -Wall -I../include -L../shlib vecscreen.c -lncbitool \
-lncbiobj -lncbi
In file included from ../include/sqnutils.h:51:0,
from vecscreen.c:68:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o gil2bin -g -O2 -Wall -I../include -L../shlib gil2bin.c -lncbitool -lncbi
gcc -o blastclust -g -O2 -Wall -I../include -L../shlib blastclust.c -lncbitool \
-lncbiobj -lncbi
blastclust.c: In function 'Nlm_Main':
blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmpdir = getenv("TMPDIR")) {
^
blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable]
SeqAlignPtr PNTR head; /* Will not be used */
^
blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable]
Uint1 align_type;
^
In file included from ../include/sqnutils.h:51:0,
from blastclust.c:200:
blastclust.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
blastclust.c: In function 'PrintNeighbors':
blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wmaybe-uninitialized]
kbp = search->sbp->kbp[context];
^
blastclust.c:779:59: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
length_coverage = MAX(((FloatHi)q_length) / query_length,
^
blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastClustHspInfoPtr PNTR hsp_info_array;
^
blastclust.c:773:22: warning: 'hsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_length = hsp->subject.length;
^
blastclust.c: In function 'Nlm_Main':
blastclust.c:1333:21: warning: 'progressfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
fprintf(progressfp, "%s Finished processing of %d queries\n",
^
gcc -o rpsblast -g -O2 -Wall -I../include -L../shlib rpsblast.c -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi
rpsblast.c: In function 'Nlm_Main':
rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable]
EBlastProgramType program_number;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/algo/blast/api/twoseq_api.h:41,
from ../include/algo/blast/api/blast_format.h:51,
from rpsblast.c:330:
rpsblast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o asn2xml -g -O2 -Wall -I../include -L../shlib asn2xml.c -lncbiobj -lncbi
gcc -o debruijn -g -O2 -Wall -I../include -L../shlib debruijn.c -lblast -lncbi
debruijn.c: In function 'Nlm_Main':
debruijn.c:72:12: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
alphabet = myargs[1].strvalue;
^
debruijn.c:80:3: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness [-Wpointer-sign]
k = strlen(alphabet);
^
In file included from ../include/ncbilcl.h:156:0,
from ../include/ncbi.h:57,
from debruijn.c:38:
/usr/include/string.h:395:15: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *'
extern size_t strlen (const char *__s)
^
debruijn.c:89:10: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
output = (char *) malloc(outputsize + 1);
^
debruijn.c:106:3: warning: pointer targets in passing argument 1 of 'puts' differ in signedness [-Wpointer-sign]
puts(output);
^
In file included from ../include/ncbilcl.h:154:0,
from ../include/ncbi.h:57,
from debruijn.c:38:
/usr/include/stdio.h:695:12: note: expected 'const char *' but argument is of type 'Nlm_Uint1 *'
extern int puts (const char *__s);
^
debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
gcc -o asn2idx -g -O2 -Wall -I../include -L../shlib asn2idx.c -lncbiobj -lncbi
gcc -o sortbyquote -g -O2 -Wall -I../include -L../shlib sortbyquote.c -lncbi
gcc -o subfuse -g -O2 -Wall -I../include -L../shlib subfuse.c -lncbiobj -lncbi
gcc -o test_regexp -g -O2 -Wall -I../include -L../shlib pcretest.c -lpcre
gcc -o demo_regexp -g -O2 -Wall -I../include -L../shlib pcredemo.c -lpcre
gcc -o demo_regexp_grep -g -O2 -Wall -I../include -L../shlib pcregrep.c -lpcre
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
cd build && rm -f blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall " VIBLIBS= VIBFLAG= THREAD_OBJ="ncbithr.o" \
THREAD_OTHERLIBS="-lpthread" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
gcc -o blast -g -O2 -Wall -I../include -L../shlib blast_driver.c ncbithr.o -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi -lpthread
gcc -o blastall -g -O2 -Wall -I../include -L../shlib blastall.c ncbithr.o -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi -lpthread
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
Boolean concat_done, nuc_concat;
^
In file included from ../include/sqnutils.h:51:0,
from blastall.c:727:
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_bsp = (num_queries>0) ? *(fake_bsp_arr + bsp_iter) : query_bsp;
^
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*(seq_annot_arr + sap_iter) = seqannot;
^
blastall.c:2609:69: warning: 'sap_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_seqalign = (num_queries>0) ? *(sap_array + sap_iter) : seqalign;
^
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (index=0; index<num_bsps; index++) {
^
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDeleteUserErrorString(err_ticket);
^
blastall.c:2812:33: warning: 'xml_aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
BXMLPrintOutput(xml_aip, NULL, options, blast_program,
^
gcc -o blastall_old -g -O2 -Wall -I../include -L../shlib -DBLASTALL_TOOLS_ONLY blastall.c \
ncbithr.o -lncbitool -lncbiobj -lncbi -lpthread
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
Boolean concat_done, nuc_concat;
^
In file included from ../include/sqnutils.h:51:0,
from blastall.c:727:
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function]
readdb_use_new_blast(char* dbname)
^
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_bsp = (num_queries>0) ? *(fake_bsp_arr + bsp_iter) : query_bsp;
^
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*(seq_annot_arr + sap_iter) = seqannot;
^
blastall.c:2609:69: warning: 'sap_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_seqalign = (num_queries>0) ? *(sap_array + sap_iter) : seqalign;
^
blastall.c:2468:5: warning: 'num_bsps' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (index=0; index<num_bsps; index++) {
^
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDeleteUserErrorString(err_ticket);
^
blastall.c:2812:33: warning: 'xml_aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
BXMLPrintOutput(xml_aip, NULL, options, blast_program,
^
gcc -o blastpgp -g -O2 -Wall -I../include -L../shlib blastpgp.c ncbithr.o -lncbitool \
-lncbiobj -lncbi -lpthread
blastpgp.c: In function 'PGPFormatFooter':
blastpgp.c:1290:32: warning: variable 'dbinfo_head' set but not used [-Wunused-but-set-variable]
TxDfDbInfoPtr dbinfo=NULL, dbinfo_head;
^
blastpgp.c: In function 'Nlm_Main':
blastpgp.c:1685:14: warning: variable 'alignCheckpoint' set but not used [-Wunused-but-set-variable]
Boolean alignCheckpoint = FALSE;
^
In file included from ../include/sqnutils.h:51:0,
from blastpgp.c:561:
blastpgp.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/ddvcreate.h:143,
from blastpgp.c:563:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o seedtop -g -O2 -Wall -I../include -L../shlib seedtop.c ncbithr.o -lncbitool \
-lncbiobj -lncbi -lpthread
seedtop.c: In function 'Nlm_Main':
seedtop.c:363:36: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
&error_returns, &info_vnp,hitArraySz)) {
^
gcc -o megablast -g -O2 -Wall -I../include -L../shlib megablast.c ncbithr.o -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi -lpthread
megablast.c: In function 'BLAST_FillOptions':
megablast.c:1908:9: warning: unused variable 'windows' [-Wunused-variable]
Int4 windows = 0;
^
In file included from ../include/sqnutils.h:51:0,
from megablast.c:661:
megablast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o rpsblast -g -O2 -Wall -I../include -L../shlib rpsblast.c ncbithr.o -lblastapi \
-lblast -lncbitool -lncbiobj -lncbi -lpthread
rpsblast.c: In function 'Nlm_Main':
rpsblast.c:567:22: warning: variable 'program_number' set but not used [-Wunused-but-set-variable]
EBlastProgramType program_number;
^
In file included from ../include/sqnutils.h:51:0,
from ../include/algo/blast/api/twoseq_api.h:41,
from ../include/algo/blast/api/blast_format.h:51,
from rpsblast.c:330:
rpsblast.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o blastclust -g -O2 -Wall -I../include -L../shlib blastclust.c ncbithr.o -lncbitool \
-lncbiobj -lncbi -lpthread
blastclust.c: In function 'Nlm_Main':
blastclust.c:1067:8: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (tmpdir = getenv("TMPDIR")) {
^
blastclust.c:1278:25: warning: variable 'head' set but not used [-Wunused-but-set-variable]
SeqAlignPtr PNTR head; /* Will not be used */
^
blastclust.c:961:11: warning: variable 'align_type' set but not used [-Wunused-but-set-variable]
Uint1 align_type;
^
In file included from ../include/sqnutils.h:51:0,
from blastclust.c:200:
blastclust.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
blastclust.c: In function 'PrintNeighbors':
blastclust.c:785:39: warning: 'context' may be used uninitialized in this function [-Wmaybe-uninitialized]
kbp = search->sbp->kbp[context];
^
blastclust.c:779:59: warning: 'query_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
length_coverage = MAX(((FloatHi)q_length) / query_length,
^
blastclust.c:668:31: warning: 'hsp_info_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastClustHspInfoPtr PNTR hsp_info_array;
^
blastclust.c:773:22: warning: 'hsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
s_length = hsp->subject.length;
^
blastclust.c: In function 'Nlm_Main':
blastclust.c:1333:21: warning: 'progressfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
fprintf(progressfp, "%s Finished processing of %d queries\n",
^
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="gcc " LDFLAGS1="-g -O2 -Wall " RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" NCBI_LINKINGLIBDIR="../shlib" \
CFLAGS1="-c -g -O2 -Wall " THREAD_OBJ="ncbithr.o" \
THREAD_OTHERLIBS="-lpthread" \
NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \
OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D"
make[2]: Entering directory `/«PKGBUILDDIR»/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
ni_service.c: In function 's_GenericGetService':
ni_service.c:199:19: warning: unused variable 'c' [-Wunused-variable]
CONNECTOR c;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
netentr.c: In function 's_NetEntTLEvalCount':
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
/*MsgSetReadTimeout(Entrez_ni, 60);*/
^
netentr.c: In function 's_NetDocSumListGet':
netentr.c:856:18: warning: variable 'amp' set but not used [-Wunused-but-set-variable]
AsnModulePtr amp;
^
netentr.c: In function 's_NetTermListByTerm':
netentr.c:1212:9: warning: variable 'terms_to_read' set but not used [-Wunused-but-set-variable]
int terms_to_read;
^
netentr.c:1200:14: warning: unused variable 'asnout' [-Wunused-variable]
AsnIoPtr asnout = Entrez_asnout;
^
netentr.c: In function 's_NetTermListByPage':
netentr.c:1343:14: warning: unused variable 'asnout' [-Wunused-variable]
AsnIoPtr asnout = Entrez_asnout;
^
netentr.c: In function 'NetEntTLEval':
netentr.c:675:5: warning: 'lsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return lsp;
^
netentr.c: In function 'NetEntTLEvalCount':
netentr.c:800:8: warning: 'atp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (atp == ENTREZ_BACK_eval_count)
^
netentr.c:782:16: note: 'atp' was declared here
AsnTypePtr atp;
^
netentr.c: In function 'NetTermListByTerm':
netentr.c:1286:19: warning: 'next_page' may be used uninitialized in this function [-Wmaybe-uninitialized]
next_page += p->num_pages_read;
^
netentr.c:1210:9: note: 'next_page' was declared here
int next_page;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
netlib.c: In function 'BoolExprAsnWrite':
netlib.c:307:16: warning: unused variable 'n' [-Wunused-variable]
static int n = 0;
^
netlib.c: At top level:
netlib.c:96:16: warning: 'loaded' defined but not used [-Wunused-variable]
static Boolean loaded = FALSE;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
objneten.c: In function 'EntrezNeighborTextAsnRead':
objneten.c:2938:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'ChildLinkAsnRead':
objneten.c:3148:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'EntrezHierarchyAsnRead':
objneten.c:3442:15: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'EntrezBlastreqAsnRead':
objneten.c:3705:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:3704:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'EntrezExtraInfoAsnRead':
objneten.c:3911:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:3910:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'ClusterArticlesAsnRead':
objneten.c:4262:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4261:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'ClusterRespAsnRead':
objneten.c:4455:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'DateConstraintsAsnRead':
objneten.c:4622:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c: In function 'DateVectorAsnRead':
objneten.c:4785:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4784:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'GetByFidAsnRead':
objneten.c:4963:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:4962:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objneten.c: In function 'GetFeatIdsAsnRead':
objneten.c:5133:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objneten.c:5132:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
Naccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
8, 6, 3, 3,
^
Naccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Naccentr.c: In function 'EntrezDocSumListGet':
Naccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
Int2 actual;
^
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
Caccentr.c:358:3: warning: missing braces around initializer [-Wmissing-braces]
8, 6, 3, 3,
^
Caccentr.c:358:3: warning: (near initialization for 'AdaptiveDocSumMatrix[0]') [-Wmissing-braces]
Caccentr.c: In function 'EntrezDocSumListGet':
Caccentr.c:1409:14: warning: variable 'actual' set but not used [-Wunused-but-set-variable]
Int2 actual;
^
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
trmlst.c: In function 'FetchFromTermList':
trmlst.c:1048:16: warning: variable 'numRead' set but not used [-Wunused-but-set-variable]
Int2 numRead;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
docsum.c: In function 'ImportDocSumForm':
docsum.c:2298:21: warning: unused variable 'sephead' [-Wunused-variable]
SeqEntryPtr sephead = NULL;
^
docsum.c:2296:21: warning: unused variable 'is_na' [-Wunused-variable]
Boolean is_na = TRUE;
^
docsum.c:2290:21: warning: unused variable 'choice' [-Wunused-variable]
Uint1 choice = 0;
^
docsum.c: In function 'SaveDocsumProject':
docsum.c:3042:16: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SummFormPtr sfp;
^
docsum.c: At top level:
docsum.c:439:15: warning: 'checkmark' defined but not used [-Wunused-variable]
static Uint1 checkmark [] = {
^
docsum.c: In function 'FetchLocalBioseq':
docsum.c:1223:6: warning: 'str' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (str == NULL) return failed;
^
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
objtax1.c: In function 'Taxon1ReqFree':
objtax1.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1InfoAsnRead':
objtax1.c:467:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:466:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1ErrorAsnRead':
objtax1.c:1067:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1066:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1NameAsnRead':
objtax1.c:1232:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1231:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon1DataAsnRead':
objtax1.c:1418:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c:1417:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objtax1.c: In function 'Taxon2DataAsnRead':
objtax1.c:1606:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objtax1.c: In function 'Taxon1ReqAsnRead':
objtax1.c:265:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objtax1.c: In function 'Taxon1RespAsnRead':
objtax1.c:868:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
taxutil.c: In function 'taxname_match':
taxutil.c:66:24: warning: unused variable 'taxstr' [-Wunused-variable]
CharPtr taxstr = NULL;
^
taxutil.c: In function 'get_lineage':
taxutil.c:140:28: warning: 'onp' may be used uninitialized in this function [-Wmaybe-uninitialized]
return Nlm_StringSave(onp->lineage);
^
taxutil.c: In function 'get_gcode':
taxutil.c:160:23: warning: 'onp' may be used uninitialized in this function [-Wmaybe-uninitialized]
gclp->genomic = onp->gcode;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function 'getIdByOrgRef':
tc2proc.c:407:17: warning: unused variable 'om_flag' [-Wunused-variable]
Boolean om_flag= FALSE;
^
tc2proc.c: In function 'bldLineage':
tc2proc.c:1095:10: warning: unused variable 'rank' [-Wunused-variable]
Int2 rank= 0;
^
tc2proc.c: In function 'storedTaxId':
tc2proc.c:2114:17: warning: unused variable 'object_id' [-Wunused-variable]
ObjectIdPtr object_id;
^
tc2proc.c: In function 'tax1e_needUpdate':
tc2proc.c:2181:13: warning: unused variable 'hit_name' [-Wunused-variable]
CharPtr hit_name;
^
tc2proc.c:2180:13: warning: unused variable 'need_search_name' [-Wunused-variable]
Boolean need_search_name= TRUE;
^
tc2proc.c:2179:9: warning: unused variable 'is_species' [-Wunused-variable]
int is_species;
^
tc2proc.c:2176:19: warning: unused variable 'res' [-Wunused-variable]
Taxon1DataPtr res;
^
tc2proc.c: At top level:
tc2proc.c:403:13: warning: 'getIdByOrgRef' defined but not used [-Wunused-function]
static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
^
tc2proc.c: In function 'mergeOrgMod':
tc2proc.c:1619:22: warning: 'lst' may be used uninitialized in this function [-Wmaybe-uninitialized]
lst->next= src;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
parttree.c: In function 'tax_ptree_addSubtree':
parttree.c:392:13: warning: unused variable 'need_remove' [-Wunused-variable]
Boolean need_remove= FALSE;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
taxblast.c: In function 'TXBHtmlReportInternal':
taxblast.c:1294:37: warning: variable 'linlines' set but not used [-Wunused-but-set-variable]
Int2 numtaxa, numorgs, numhits, linlines, longname;
^
taxblast.c: At top level:
taxblast.c:1902:13: warning: 'getTotalTaxIdCount' defined but not used [-Wunused-function]
static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
^
taxblast.c: In function 'RDTaxLookupReset':
taxblast.c:1985:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
taxblast.c: In function 'TXBGetTargetGi.isra.2':
taxblast.c:501:5: warning: 'gi' may be used uninitialized in this function [-Wmaybe-uninitialized]
return gi;
^
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
id1gen.c: In function 'ID1serverRequestFree':
id1gen.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1serverMaxcomplexAsnRead':
id1gen.c:348:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:347:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1SeqHistAsnRead':
id1gen.c:530:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:529:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1SeqEntryInfoAsnRead':
id1gen.c:979:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:978:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1blobInfoAsnRead':
id1gen.c:1147:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c:1146:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
id1gen.c: In function 'ID1serverDebugAsnRead':
id1gen.c:1368:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
id1gen.c: In function 'ID1serverBackAsnRead':
id1gen.c:811:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
id1gen.c: In function 'ID1serverRequestAsnRead':
id1gen.c:186:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
id1arch.c: In function 'ID1ArchSeqEntryGet':
id1arch.c:173:7: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
id1arch.c: In function 'ID1ArchGIGet':
id1arch.c:486:10: warning: unused variable 'retval' [-Wunused-variable]
Int4 retval = 0;
^
id1arch.c: In function 'SeqHistPrintTable':
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
1900+shp->replace_date->data[1]);
^
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat=]
id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat=]
fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
accid1.c: In function 's_ID1BioseqFetchFunc':
accid1.c:262:9: warning: unused variable 'retcode' [-Wunused-variable]
Int2 retcode=0;
^
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
objblst3.c: In function 'BlastSearchAsnRead':
objblst3.c:91:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:90:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastRequestFree':
objblst3.c:287:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:337:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff2_cutoff2Free':
objblst3.c:999:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1027:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'Cutoff2_cutoff2AsnRead':
objblst3.c:1422:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff_cutoffAsnRead':
objblst3.c:1788:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'Cutoff_cutoffFree':
objblst3.c:1871:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objblst3.c: In function 'BlastMatrixAsnRead':
objblst3.c:1936:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastDbinfoAsnRead':
objblst3.c:2153:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2152:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastMaskAsnRead':
objblst3.c:2357:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastKABlkAsnRead':
objblst3.c:2517:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2516:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastErrorAsnRead':
objblst3.c:2697:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:2696:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastPhialignAsnRead':
objblst3.c:2861:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastDbinfoGetAsnRead':
objblst3.c:3022:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3021:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastSeqIdAsnRead':
objblst3.c:3187:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3186:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastSequenceAsnRead':
objblst3.c:3364:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3363:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastPartsAsnRead':
objblst3.c:3532:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastQueuedAsnRead':
objblst3.c:3694:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3693:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastProgressAsnRead':
objblst3.c:3846:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3845:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastDeflineAsnRead':
objblst3.c:4000:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:3999:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'BlastVersionAsnRead':
objblst3.c:4168:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:4167:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'MegaBlastHitAsnRead':
objblst3.c:4335:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c:4334:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objblst3.c: In function 'MegaBlastResultsAsnRead':
objblst3.c:4546:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objblst3.c: In function 'BlastRequestAsnRead':
objblst3.c:430:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c: In function 'BlastResponseAsnRead':
objblst3.c:791:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c: In function 'BlastParametersAsnRead':
objblst3.c:1474:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c:1421:10: note: 'choice' was declared here
Uint1 choice;
^
objblst3.c:1840:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objblst3.c:1787:10: note: 'choice' was declared here
Uint1 choice;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
netblap3.c: In function 'BlastNetBioseqFetchFunc':
netblap3.c:1835:16: warning: variable 'omdp' set but not used [-Wunused-but-set-variable]
OMUserDataPtr omdp;
^
netblap3.c: In function 'MegaBlastSeqLocNetCore':
netblap3.c:2049:8: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID = 0;
^
In file included from ../include/netblap3.h:134:0,
from netblap3.c:364:
netblap3.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from netblap3.c:364:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
netblap3.c:430:1: warning: 'BlastSetErrorHook' defined but not used [-Wunused-function]
BlastSetErrorHook(void)
^
netblap3.c:438:1: warning: 'BlastSetErrorStatus' defined but not used [-Wunused-function]
BlastSetErrorStatus(Boolean status)
^
netblap3.c:445:1: warning: 'BlastGetErrorStatus' defined but not used [-Wunused-function]
BlastGetErrorStatus(void)
^
netblap3.c:452:1: warning: 'BlastResetOldHook' defined but not used [-Wunused-function]
BlastResetOldHook(void)
^
netblap3.c: In function 'BlastNetMatrixToBlastMatrix':
netblap3.c:1212:35: warning: 'index2' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
^
netblap3.c: In function 'TraditionalBlastReportEngine':
netblap3.c:2570:11: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
objmla.c: In function 'MlaRequestFree':
objmla.c:49:12: warning: variable 'pnt' set but not used [-Wunused-but-set-variable]
Pointer pnt;
^
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:96:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla.c: In function 'TitleMsgAsnRead':
objmla.c:447:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla.c:446:12: warning: unused variable 'isError' [-Wunused-variable]
Boolean isError = FALSE;
^
objmla.c: In function 'TitleMsgListAsnRead':
objmla.c:612:16: warning: variable 'func' set but not used [-Wunused-but-set-variable]
AsnReadFunc func;
^
objmla.c: In function 'MlaRequestAsnRead':
objmla.c:249:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
objmla.c: In function 'MlaBackAsnRead':
objmla.c:902:16: warning: 'choice' may be used uninitialized in this function [-Wmaybe-uninitialized]
anp->choice = choice;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
medarch.c:710:8: warning: 's_MedArchPubSetEntryGetPmId' defined but not used [-Wunused-function]
/*FCN*/s_MedArchPubSetEntryGetPmId (
^
medarch.c:758:8: warning: 's_MedArchPubSetEntryGetUid' defined but not used [-Wunused-function]
/*FCN*/s_MedArchPubSetEntryGetUid (
^
medarch.c: In function 'MedArchPubSetCreate':
medarch.c:1693:30: warning: 'pubSetEAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
^
In file included from ../include/ni_types.h:85:0,
from ../include/ncbinet.h:84,
from medarch.c:122:
../include/asn.h:465:41: warning: 'pubSetAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
^
medarch.c:1625:16: note: 'pubSetAtp' was declared here
AsnTypePtr pubSetAtp;
^
medarch.c:1655:14: warning: 'startAtp' may be used uninitialized in this function [-Wmaybe-uninitialized]
AsnWrite (aip, startAtp, NULL);
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
gcc -o Psequin -I. -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \
-lvibnet -lncbidesk -lblastapi -lnetblast -lncbitool -lncbimla \
-lvibrant -lncbiobj -lncbi
sequin1.c: In function 'SQACT_GuessWhatIAm':
sequin1.c:4927:76: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
if ((Int4)(*cp) < 0 || (Int4)(*cp) >= 256 || ! isprint ((Int4)(*cp)) && ! isspace ((Int4)(*cp)))
^
sequin1.c: In function 'FinishAlignmentRead':
sequin1.c:5239:16: warning: variable 'rsult' set but not used [-Wunused-but-set-variable]
Boolean rsult;
^
sequin1.c: In function 'DeleteSelectedFeatureOrDescriptor':
sequin1.c:8904:19: warning: variable 'itemtype' set but not used [-Wunused-but-set-variable]
Uint2 itemtype;
^
sequin1.c:8903:19: warning: variable 'itemID' set but not used [-Wunused-but-set-variable]
Uint4 itemID;
^
sequin1.c:8901:19: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sequin1.c: In function 'WizardTrackerFree':
sequin1.c:15642:20: warning: variable 'sep_next' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep, sep_next;
^
sequin1.c: In function 'AddCodingRegionFromWizard':
sequin1.c:15711:33: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr old, psep, nsep;
^
sequin1.c: In function 'SetWizardTrackerBaseSrcQuals':
sequin1.c:15990:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
switch (wiz->virus_class) {
^
sequin1.c:16037:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
switch (wiz->cultured_kingdom) {
^
sequin1.c: In function 'SetWizardTrackerExtraSrcQuals':
sequin1.c:16136:7: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
switch (wiz->virus_class) {
^
sequin1.c:16161:7: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
switch (wiz->cultured_kingdom) {
^
sequin1.c: In function 'AddWizardFeatureCallback':
sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_None' not handled in switch [-Wswitch]
switch (wiz->virus_feat) {
^
sequin1.c:16488:3: warning: enumeration value 'eVirusFeat_CDS' not handled in switch [-Wswitch]
sequin1.c: In function 'HaveUniqueCombinationOfQuals':
sequin1.c:17141:15: warning: variable 'num_quals' set but not used [-Wunused-but-set-variable]
Int4 num_quals;
^
sequin1.c: In function 'VirusQualsOk':
sequin1.c:20709:5: warning: enumeration value 'eVirusClass_Unknown' not handled in switch [-Wswitch]
switch (wiz->virus_class) {
^
sequin1.c: In function 'CulturedSamplesOk':
sequin1.c:20814:5: warning: enumeration value 'eCulturedKingdom_Unknown' not handled in switch [-Wswitch]
switch (wiz->cultured_kingdom) {
^
sequin1.c: In function 'CheckFeatureQualsUniqueness':
sequin1.c:22415:8: warning: variable 'num_rows' set but not used [-Wunused-but-set-variable]
Int4 num_rows, row_num;
^
sequin1.c: In function 'WizardFeatureQualsOk':
sequin1.c:22506:11: warning: variable 'num_features' set but not used [-Wunused-but-set-variable]
Int4 num_features;
^
sequin1.c: In function 'TabTableToMultiModTabTable':
sequin1.c:22874:16: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp = NULL;
^
sequin1.c: In function 'MultiModTableToTabTable':
sequin1.c:22953:21: warning: variable 'fq' set but not used [-Wunused-but-set-variable]
WizardFeatQualPtr fq;
^
sequin1.c: In function 'ShowAllFeatureQualSequences':
sequin1.c:23510:15: warning: variable 'show_all' set but not used [-Wunused-but-set-variable]
Boolean show_all = TRUE;
^
sequin1.c: In function 'TabTableLineFromFeature':
sequin1.c:24456:14: warning: unused variable 'vals' [-Wunused-variable]
ValNodePtr vals = NULL, q_vnp;
^
sequin1.c: In function 'PregenerateFeatures':
sequin1.c:24506:22: warning: unused variable 'problems' [-Wunused-variable]
CharPtr PNTR problems = NULL;
^
sequin1.c: In function 'CollectWizardSetType':
sequin1.c:25697:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
switch (wiz->wizard_type) {
^
sequin1.c:25697:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c: In function 'SequencingMethodToDialog':
sequin1.c:26179:27: warning: variable 'info' set but not used [-Wunused-but-set-variable]
SequencingMethodInfoPtr info;
^
sequin1.c: In function 'CollectWizardSourceType':
sequin1.c:26622:5: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
switch (wiz->wizard_type) {
^
sequin1.c:26622:5: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26622:5: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'HaveWizardSourceType':
sequin1.c:26655:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
switch (wiz->wizard_type) {
^
sequin1.c:26655:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:26655:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26655:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'WizardSourceTypeForm':
sequin1.c:26717:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
switch (wiz->wizard_type) {
^
sequin1.c:26717:3: warning: enumeration value 'eWizardType_TSA' not handled in switch [-Wswitch]
sequin1.c:26717:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
sequin1.c:26717:3: warning: enumeration value 'eWizardType_DLoop' not handled in switch [-Wswitch]
sequin1.c: In function 'PopulateAAPopup':
sequin1.c:27745:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
sequin1.c: In function 'CountAmbiProc':
sequin1.c:29126:11: warning: unused variable 'normal' [-Wunused-variable]
Int4 normal = 0;
^
sequin1.c: In function 'SetFastaText':
sequin1.c:29946:15: warning: unused variable 'intro' [-Wunused-variable]
CharPtr intro = NULL;
^
sequin1.c: In function 'WizardFASTAFwd':
sequin1.c:30287:3: warning: enumeration value 'eWizardType_UnculturedSamples' not handled in switch [-Wswitch]
switch (frm->wiz->wizard_type) {
^
sequin1.c:30287:3: warning: enumeration value 'eWizardType_Viruses' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_CulturedSamples' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_IGS' not handled in switch [-Wswitch]
sequin1.c:30287:3: warning: enumeration value 'eWizardType_Microsatellite' not handled in switch [-Wswitch]
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/accutils.h:119,
from sequin1.c:78:
sequin1.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/accutils.h:119,
from sequin1.c:78:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/accutils.h:119,
from sequin1.c:78:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from ../include/accutils.h:119,
from sequin1.c:78:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from sequin1.c:84:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from ../include/ingenwin.h:62,
from sequin1.c:89:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/netblap3.h:135:0,
from ../include/ingenwin.h:62,
from sequin1.c:89:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sequin1.c:92:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
In file included from sequin1.c:116:0:
../include/objmime.h:145:29: warning: 'Data_dataFree' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
^
../include/objmime.h:146:29: warning: 'Data_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:147:24: warning: 'Data_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:285:47: warning: 'SeqAlignData_seq_align_dataFree' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
^
../include/objmime.h:286:47: warning: 'SeqAlignData_seq_align_dataAsnRead' declared 'static' but never defined [-Wunused-function]
static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmime.h:287:24: warning: 'SeqAlignData_seq_align_dataAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
^
sequin1.c:381:13: warning: 'SetSequinAppParamTF' defined but not used [-Wunused-function]
static void SetSequinAppParamTF (CharPtr section, CharPtr type, Boolean value)
^
sequin1.c:630:13: warning: 'ReplaceString' defined but not used [-Wunused-function]
static void ReplaceString (CharPtr PNTR target, CharPtr newstr)
^
sequin1.c:2288:13: warning: 'StyleManagerProc' defined but not used [-Wunused-function]
static void StyleManagerProc (IteM i)
^
sequin1.c:7084:16: warning: 'LookupJournalFuncNew' defined but not used [-Wunused-function]
static Boolean LookupJournalFuncNew (CharPtr title, size_t maxsize, Int1Ptr jtaType, ValNodePtr PNTR all_titlesP)
^
sequin1.c:7668:13: warning: 'FindAlu' defined but not used [-Wunused-function]
static void FindAlu (IteM i)
^
sequin1.c:7894:13: warning: 'DefaultMessageProc' defined but not used [-Wunused-function]
static void DefaultMessageProc (ForM f, Int2 mssg)
^
sequin1.c:7907:13: warning: 'PreferencesProc' defined but not used [-Wunused-function]
static void PreferencesProc (IteM i)
^
sequin1.c:9051:13: warning: 'TermSelectionFormMessage' defined but not used [-Wunused-function]
static void TermSelectionFormMessage (ForM f, Int2 mssg)
^
sequin1.c:9071:13: warning: 'DocumentSummaryFormMessage' defined but not used [-Wunused-function]
static void DocumentSummaryFormMessage (ForM f, Int2 mssg)
^
sequin1.c:10824:13: warning: 'ObjMgrReport' defined but not used [-Wunused-function]
static void ObjMgrReport (IteM i)
^
sequin1.c:17187:16: warning: 'DoAllSequencesHaveAnExtraQual' defined but not used [-Wunused-function]
static Boolean DoAllSequencesHaveAnExtraQual (SeqEntryPtr sep, ValNodePtr extra_src_quals)
^
sequin1.c:17257:13: warning: 'SeqEntryToModTabTable' defined but not used [-Wunused-function]
static void SeqEntryToModTabTable (SeqEntryPtr sep, DialoG d, CharPtr mod_name)
^
sequin1.c:17292:13: warning: 'ModTableToSeqEntryList' defined but not used [-Wunused-function]
static void ModTableToSeqEntryList (SeqEntryPtr sep, DialoG d, CharPtr mod_name)
^
sequin1.c:17324:13: warning: 'ClearModifierValues' defined but not used [-Wunused-function]
static void ClearModifierValues (SeqEntryPtr sep, DialoG d, CharPtr mod_name)
^
sequin1.c:18852:16: warning: 'RNAAnnotationWindow' defined but not used [-Wunused-function]
static Boolean RNAAnnotationWindow(WizardTrackerPtr wiz)
^
sequin1.c:26802:16: warning: 'WizardCommentForm' defined but not used [-Wunused-function]
static Boolean WizardCommentForm (WizardTrackerPtr wiz)
^
sequin1.c:18084:16: warning: 'JumpToMainSubmission' defined but not used [-Wunused-function]
static Boolean JumpToMainSubmission (WizardTrackerPtr wiz)
^
sequin1.c:18185:13: warning: 'GroupChoiceFromName' defined but not used [-Wunused-function]
static Int2 GroupChoiceFromName (CharPtr rna_name, CharPtr PNTR standard_names)
^
sequin1.c:18659:16: warning: 'MultOrganelleFeat' defined but not used [-Wunused-function]
static Boolean MultOrganelleFeat (WizardTrackerPtr wiz)
^
sequin1.c:23478:16: warning: 'EqualIgnoreWhiteSpacePunctAndCaps' defined but not used [-Wunused-function]
static Boolean EqualIgnoreWhiteSpacePunctAndCaps (CharPtr a, CharPtr b)
^
sequin1.c:24580:16: warning: 'GetLocStart' defined but not used [-Wunused-function]
static CharPtr GetLocStart (SeqFeatPtr sfp)
^
sequin1.c:24593:16: warning: 'GetLocStop' defined but not used [-Wunused-function]
static CharPtr GetLocStop (SeqFeatPtr sfp)
^
sequin1.c:24606:13: warning: 'ApplyLocStart' defined but not used [-Wunused-function]
static void ApplyLocStart (SeqFeatPtr sfp, CharPtr val)
^
sequin1.c:24622:13: warning: 'ApplyLocStop' defined but not used [-Wunused-function]
static void ApplyLocStop (SeqFeatPtr sfp, CharPtr val)
^
sequin1.c:24729:16: warning: 'IsAllATGC' defined but not used [-Wunused-function]
static Boolean IsAllATGC (CharPtr val)
^
sequin1.c:25266:13: warning: 'SaveVirusFeatureTableChoice' defined but not used [-Wunused-function]
static void SaveVirusFeatureTableChoice (Pointer data, WizardTrackerPtr wiz)
^
sequin1.c:25864:16: warning: 'WizardStructuredCommentForm' defined but not used [-Wunused-function]
static Boolean WizardStructuredCommentForm
^
sequin1.c: In function 'TabTableToSeqAnnotList':
sequin1.c:23167:62: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
RemoveValueFromDefline (sq->name, iatep->title_list[i]);
^
sequin1.c: In function 'SubtoolDoneFuncEx':
sequin1.c:2018:31: warning: 'bfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqMgrClearFeatureIndexes (bfp->input_entityID, NULL);
^
sequin1.c: In function 'BioseqViewFormMenus':
sequin1.c:8507:23: warning: 'mssgupd_idx' may be used uninitialized in this function [-Wmaybe-uninitialized]
SetFormMenuItem (bfp, mssgupd_idx, (IteM) sub);
^
sequin2.c: In function 'ValidateModifierTableSequenceIDs':
sequin2.c:2845:16: warning: variable 'deleted_rows' set but not used [-Wunused-but-set-variable]
Int4 deleted_rows;
^
sequin2.c: In function 'ImportFastaDialog':
sequin2.c:4568:17: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep, new_sep_list, new_sep, test_sep;
^
sequin2.c: In function 'ExportOneRawSequence':
sequin2.c:4830:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
Char buffer [EXPORT_PAGE_WIDTH + 1];
^
sequin2.c: In function 'ExportOneDeltaBioseq':
sequin2.c:4929:15: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
Char buffer [EXPORT_PAGE_WIDTH + 1];
^
sequin2.c: In function 'FindBioseqWithValue':
sequin2.c:7883:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp = NULL;
^
sequin2.c: In function 'CollectNucleotideProteinAssociations':
sequin2.c:9250:73: warning: variable 'p_msg' set but not used [-Wunused-but-set-variable]
GrouP h, title_grp, all_gene_grp, all_prot_grp, k, c, p_msg;
^
sequin2.c: In function 'GetModNameStartFromEqLoc':
sequin2.c:11839:11: warning: variable 'match_quote' set but not used [-Wunused-but-set-variable]
Char match_quote;
^
sequin2.c: In function 'GetValueFromTitle':
sequin2.c:12403:15: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable]
Boolean is_nontext;
^
sequin2.c: In function 'PrepareSourceAssistantTableData':
sequin2.c:13654:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable]
Int4 column_width, num_columns = 0;
^
sequin2.c: In function 'SetOrganismText':
sequin2.c:13856:30: warning: variable 'changed_val' set but not used [-Wunused-but-set-variable]
Boolean changed_val = FALSE;
^
sequin2.c: In function 'ApplyRowListToIDAndTitleEdit':
sequin2.c:15507:32: warning: variable 'next_org' set but not used [-Wunused-but-set-variable]
CharPtr org_loc, org_end, next_org;
^
sequin2.c: In function 'EditOrgModColumn':
sequin2.c:16418:26: warning: variable 'row_list' set but not used [-Wunused-but-set-variable]
ValNodePtr row_list = NULL;
^
sequin2.c: In function 'ApplyOrgModColumn':
sequin2.c:17267:11: warning: variable 'is_nontext' set but not used [-Wunused-but-set-variable]
Boolean is_nontext;
^
sequin2.c: In function 'PrepareSequenceAssistantTableData':
sequin2.c:18241:36: warning: variable 'num_columns' set but not used [-Wunused-but-set-variable]
Int4 column_width, num_columns = 0;
^
sequin2.c: In function 'UpdateIdAndTitleEditDialog':
sequin2.c:19658:50: warning: variable 'has_space' set but not used [-Wunused-but-set-variable]
Boolean has_dups, has_missing, has_bracket, has_space, has_unrec_mods = FALSE;
^
sequin2.c: In function 'SetIDAndTitleEditDialogErrorColumn':
sequin2.c:19808:74: warning: variable 'has_space' set but not used [-Wunused-but-set-variable]
Boolean has_dups, has_missing, has_bracket, has_unrec_mods = FALSE, has_space;
^
sequin2.c: In function 'GetDiffDlgCoord':
sequin2.c:20978:19: warning: variable 'start_col' set but not used [-Wunused-but-set-variable]
Int4 start_row, start_col;
^
sequin2.c:20978:8: warning: variable 'start_row' set but not used [-Wunused-but-set-variable]
Int4 start_row, start_col;
^
sequin2.c: In function 'DownloadAndDisplay':
sequin2.c:26788:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable]
CharPtr dbname;
^
sequin2.c: In function 'DownloadProc':
sequin2.c:26956:17: warning: variable 'dbname' set but not used [-Wunused-but-set-variable]
CharPtr dbname;
^
sequin2.c: In function 'LoadSecondaryAccessionNumbersPlusHistFromFile':
sequin2.c:28210:17: warning: variable 'need_seqid' set but not used [-Wunused-but-set-variable]
Boolean need_seqid;
^
sequin2.c: In function 'RemoveEmptyGenomeProjectIDCallback':
sequin2.c:28350:13: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
&& StringCmp (oip->str, "ProjectID") == 0 || StringCmp (oip->str, "ParentID") == 0) {
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from sequin2.c:66:
sequin2.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sequin2.c:3920:1: warning: 'ReadOneSegSet' defined but not used [-Wunused-function]
ReadOneSegSet
^
sequin2.c:8182:20: warning: 'FindSeqEntryWithTranscriptID' defined but not used [-Wunused-function]
static SeqEntryPtr FindSeqEntryWithTranscriptID (SeqEntryPtr sep, CharPtr transcript_id)
^
sequin2.c:10754:17: warning: 'GetSeqIdFromSeqEntryPtr' defined but not used [-Wunused-function]
static SeqIdPtr GetSeqIdFromSeqEntryPtr (SeqEntryPtr sep)
^
sequin2.c:24973:1: warning: 'SequenceAssistantValidateSegments' defined but not used [-Wunused-function]
SequenceAssistantValidateSegments
^
sequin2.c:26384:13: warning: 'GetRawBsps' defined but not used [-Wunused-function]
static void GetRawBsps (BioseqPtr bsp, Pointer userdata)
^
sequin2.c: In function 'SeqEntryPtrToOrgDoc':
sequin2.c:13143:26: warning: 'row_status' may be used uninitialized in this function [-Wmaybe-uninitialized]
line_len = StringLen (row_status) + 30;
^
sequin2.c:13033:14: note: 'row_status' was declared here
CharPtr row_status;
^
sequin2.c: In function 'InsertMostUsedFeatureValNodes':
sequin2.c:28486:22: warning: 'new_item' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_item->next = old_list;
^
sequin3.c: In function 'FarToNearProc':
sequin3.c:941:12: warning: variable 'olddelta' set but not used [-Wunused-but-set-variable]
Pointer olddelta;
^
sequin3.c: In function 'FixLocus':
sequin3.c:1404:15: warning: variable 'embl_code' set but not used [-Wunused-but-set-variable]
CharPtr ptr, embl_code;
^
sequin3.c: In function 'RemoveGeneXrefsOnBioseqs':
sequin3.c:2667:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
sequin3.c: In function 'MakeCDS':
sequin3.c:6938:27: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr psep, nsep, old, topsep;
^
sequin3.c: In function 'ConvertOneCDSToMiscFeat':
sequin3.c:9351:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| must_have_stops && !HasInternalStops (sfp))
^
sequin3.c: In function 'SuppressGenesOnFeatures':
sequin3.c:11193:20: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
sequin3.c: In function 'CheckForExistingMolInfo':
sequin3.c:12866:17: warning: variable 'bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr bsp;
^
sequin3.c: In function 'UniqueAndCountValNodeCS':
sequin3.c:13830:17: warning: variable 'curr' set but not used [-Wunused-but-set-variable]
ValNodePtr curr;
^
sequin3.c: In function 'RemoveNthCDS':
sequin3.c:21998:17: warning: variable 'segCount' set but not used [-Wunused-but-set-variable]
Int4 segCount;
^
sequin3.c: In function 'InstantiateGapFeatCallback':
sequin3.c:23218:15: warning: variable 'fuzz' set but not used [-Wunused-but-set-variable]
IntFuzzPtr fuzz;
^
In file included from ../include/tax3api.h:51:0,
from sequin3.c:71:
sequin3.c: At top level:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sequin3.c:73:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sequin3.c:2382:13: warning: 'JustTaxonFixup' defined but not used [-Wunused-function]
static void JustTaxonFixup (IteM i)
^
sequin3.c:2548:13: warning: 'NewRemoveDuplicateFeatsGenes' defined but not used [-Wunused-function]
static void NewRemoveDuplicateFeatsGenes (IteM i)
^
sequin3.c:4349:13: warning: 'CorrectAlignmentsAfterNToGapConversion' defined but not used [-Wunused-function]
static void CorrectAlignmentsAfterNToGapConversion (SeqEntryPtr sep, Uint2 entityID)
^
sequin3.c:4381:13: warning: 'RawSeqToDeltaSeq' defined but not used [-Wunused-function]
static void RawSeqToDeltaSeq (IteM i)
^
sequin3.c:4395:13: warning: 'RawSeqToDeltaSeqUnknownLengthGaps' defined but not used [-Wunused-function]
static void RawSeqToDeltaSeqUnknownLengthGaps (IteM i)
^
sequin3.c:4412:13: warning: 'RawSeqToDeltaSeqUnknown100LengthGaps' defined but not used [-Wunused-function]
static void RawSeqToDeltaSeqUnknown100LengthGaps (IteM i)
^
sequin3.c:6006:13: warning: 'EnableFeatureToGeneControlsPopup' defined but not used [-Wunused-function]
static void EnableFeatureToGeneControlsPopup (PopuP p)
^
sequin3.c:6014:13: warning: 'EnableFeatureToGeneControlsText' defined but not used [-Wunused-function]
static void EnableFeatureToGeneControlsText (TexT t)
^
sequin3.c:8121:13: warning: 'MultiTransformProc' defined but not used [-Wunused-function]
static void MultiTransformProc (IteM i, Uint1 targettype)
^
sequin3.c:12594:13: warning: 'NewMolInfoFieldsApply' defined but not used [-Wunused-function]
static void NewMolInfoFieldsApply (IteM i)
^
sequin3.c:12650:13: warning: 'RibosomalRNAToGenomicDNAMenuItem' defined but not used [-Wunused-function]
static void RibosomalRNAToGenomicDNAMenuItem (IteM i)
^
sequin3.c:14618:13: warning: 'PrepareTaxListProc' defined but not used [-Wunused-function]
static void PrepareTaxListProc (IteM i)
^
sequin3.c:17573:13: warning: 'DoGeneReset' defined but not used [-Wunused-function]
static void DoGeneReset (IteM i)
^
sequin3.c:18047:1: warning: 'TruncProtsAtStopsExEx' defined but not used [-Wunused-function]
TruncProtsAtStopsExEx
^
sequin3.c:23365:13: warning: 'AddAllDbxrefsMenuItem' defined but not used [-Wunused-function]
static void AddAllDbxrefsMenuItem (IteM i)
^
sequin3.c:23410:13: warning: 'NewAligmentViewer' defined but not used [-Wunused-function]
static void NewAligmentViewer (IteM i)
^
sequin3.c:23543:13: warning: 'TestTax3A' defined but not used [-Wunused-function]
static void TestTax3A (IteM i)
^
sequin3.c:23549:13: warning: 'TestTax3B' defined but not used [-Wunused-function]
static void TestTax3B (IteM i)
^
sequin3.c:23908:13: warning: 'ModernizePCRs' defined but not used [-Wunused-function]
static void ModernizePCRs (IteM i)
^
sequin3.c:23935:13: warning: 'ModernizeRNAs' defined but not used [-Wunused-function]
static void ModernizeRNAs (IteM i)
^
sequin3.c:23962:13: warning: 'ModernizeGenes' defined but not used [-Wunused-function]
static void ModernizeGenes (IteM i)
^
sequin3.c:24389:13: warning: 'WriteAccessionsCallback' defined but not used [-Wunused-function]
static void WriteAccessionsCallback (BioseqPtr bsp, Pointer data)
^
sequin3.c:24720:13: warning: 'TestSegregateByList' defined but not used [-Wunused-function]
static void TestSegregateByList (IteM i)
^
sequin4.c: In function 'SplitSegmentedFeatsOnOneSet':
sequin4.c:1692:20: warning: variable 'set_sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep, set_sep;
^
sequin4.c: In function 'RemoveOneSegSet':
sequin4.c:2363:30: warning: variable 'seg_bssp' set but not used [-Wunused-but-set-variable]
BioseqSetPtr seg_nuc_prot, seg_bssp;
^
sequin4.c: In function 'NewUpdateSeqAlign':
sequin4.c:3418:20: warning: variable 'bssp' set but not used [-Wunused-but-set-variable]
BioseqSetPtr bssp;
^
sequin4.c: In function 'ImportAlignmentForSeqHistInterval':
sequin4.c:3613:21: warning: unused variable 'bssp' [-Wunused-variable]
BioseqSetPtr bssp = NULL;
^
sequin4.c:3600:21: warning: unused variable 'salp' [-Wunused-variable]
SeqAlignPtr salp=NULL,
^
sequin4.c: In function 'GenerateSeqAlignFromSeqEntryMasterOption':
sequin4.c:5300:21: warning: unused variable 'bsp' [-Wunused-variable]
BioseqPtr bsp = NULL;
^
sequin4.c: In function 'LaunchOrfViewer':
sequin4.c:7681:9: warning: variable 'qu' set but not used [-Wunused-but-set-variable]
ButtoN qu, b1;
^
sequin4.c: In function 'MRnaFromCdsCallback':
sequin4.c:8579:17: warning: variable 'entityID' set but not used [-Wunused-but-set-variable]
Uint2 entityID;
^
sequin4.c: In function 'FindNonACGT':
sequin4.c:10240:21: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
sequin4.c: In function 'ConsolidateOrganismNotesProc':
sequin4.c:11481:21: warning: variable 'note_mod' set but not used [-Wunused-but-set-variable]
OrgModPtr mod, note_mod;
^
sequin4.c:11480:21: warning: variable 'note_ssp' set but not used [-Wunused-but-set-variable]
SubSourcePtr ssp, note_ssp;
^
sequin4.c: In function 'GetPubStatus':
sequin4.c:13310:14: warning: variable 'csp' set but not used [-Wunused-but-set-variable]
CitSubPtr csp;
^
In file included from ../include/asn2ff6.h:142:0,
from ../include/asn2ffp.h:374,
from sequin4.c:55:
sequin4.c: At top level:
../include/asnprt.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnprt.h60";
^
../include/asnprt.h:59:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = NULL;
^
../include/asnprt.h:60:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnprt.h:61:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from sequin4.c:72:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
sequin4.c:16360:25: warning: 'FeatToDeltaSeq' defined but not used [-Wunused-function]
static Int2 LIBCALLBACK FeatToDeltaSeq (Pointer data)
^
sequin4.c:3513:18: warning: 'FindBioseqForSeqHist' defined but not used [-Wunused-function]
static BioseqPtr FindBioseqForSeqHist (SeqAlignPtr salp)
^
sequin4.c:7172:13: warning: 'AddOrfListToDoc' defined but not used [-Wunused-function]
static void AddOrfListToDoc(DoC doc, ValNodePtr list)
^
sequin4.c:12398:13: warning: 'PubConstraintClearText' defined but not used [-Wunused-function]
static void PubConstraintClearText (PubConstraintPtr pcp)
^
sequin4.c:16818:13: warning: 'CleanupTruncateByProtAlignForm' defined but not used [-Wunused-function]
static void CleanupTruncateByProtAlignForm (GraphiC g, VoidPtr data)
^
sequin4.c: In function 'SplitSegmentedFeats.isra.77':
sequin4.c:1700:27: warning: 'new_frame' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 len_modulo, new_frame;
^
sequin4.c: In function 'GroupExplodeFunc':
sequin4.c:6012:18: warning: 'lastEsp' may be used uninitialized in this function [-Wmaybe-uninitialized]
lastEsp->next = esp;
^
sequin5.c: In function 'GeneExtendFunc':
sequin5.c:262:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
sequin5.c: In function 'RemoveGBIDsProc':
sequin5.c:1562:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
sequin5.c: In function 'RemoveGBProtIDsProc':
sequin5.c:1612:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
sequin5.c: In function 'RemoveGIProc':
sequin5.c:1663:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
sequin5.c: In function 'SetmRNAFieldString':
sequin5.c:6823:17: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
Int4 field_choice;
^
sequin5.c: In function 'GetCDSGeneProtField':
sequin5.c:7508:11: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
Int4 field_choice;
^
sequin5.c: In function 'GetRNAFieldString':
sequin5.c:7903:21: warning: variable 'field_choice' set but not used [-Wunused-but-set-variable]
Int4 field_choice;
^
sequin5.c:7897:14: warning: variable 'rrp' set but not used [-Wunused-but-set-variable]
RnaRefPtr rrp;
^
sequin5.c: In function 'SetRNAFieldString':
sequin5.c:8138:17: warning: variable 'rrp' set but not used [-Wunused-but-set-variable]
RnaRefPtr rrp;
^
sequin5.c: In function 'BioseqConstrainedFeaturesCallback':
sequin5.c:11568:21: warning: variable 'cop' set but not used [-Wunused-but-set-variable]
ConstraintOpPtr cop;
^
sequin5.c: In function 'SampleDialogCopy':
sequin5.c:13820:53: warning: variable 'last_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
sequin5.c:13820:42: warning: variable 'first_col' set but not used [-Wunused-but-set-variable]
Int2 start_col = 0, end_col = 0, first_col, last_col;
^
sequin5.c: In function 'TestFeatureFieldChoice':
sequin5.c:14341:31: warning: variable 'dlg' set but not used [-Wunused-but-set-variable]
FeatureFieldChoiceDialogPtr dlg;
^
sequin5.c: In function 'CreateClickableListForSourceFeats':
sequin5.c:15126:27: warning: variable 'insertion_seq_txt' set but not used [-Wunused-but-set-variable]
CharPtr transposon_txt, insertion_seq_txt, note_txt;
^
sequin5.c:15126:11: warning: variable 'transposon_txt' set but not used [-Wunused-but-set-variable]
CharPtr transposon_txt, insertion_seq_txt, note_txt;
^
sequin5.c: In function 'CDSToMiscFeatConvertFunc':
sequin5.c:15286:24: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Boolean rval = FALSE;
^
sequin5.c: In function 'GetRegionOpts':
sequin5.c:15424:25: warning: unused variable 'rval' [-Wunused-variable]
Boolean rval = FALSE;
^
sequin5.c: In function 'NewConvertFeaturesByList':
sequin5.c:15594:14: warning: unused variable 'only_pseudo' [-Wunused-variable]
Boolean only_pseudo = FALSE;
^
sequin5.c: In function 'FeatureRemoveOrConvertAction':
sequin5.c:15860:25: warning: variable 'sfp' set but not used [-Wunused-but-set-variable]
SeqFeatPtr sfp;
^
sequin5.c: In function 'CDSGeneProtAECRDialog':
sequin5.c:18829:25: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin5.c: In function 'CDSGeneProtConvert':
sequin5.c:19196:18: warning: unused variable 'str_dst' [-Wunused-variable]
CharPtr str_dst = NULL;
^
sequin5.c: In function 'CDSGeneProtParse':
sequin5.c:19406:18: warning: variable 'avd' set but not used [-Wunused-but-set-variable]
ApplyValueData avd;
^
sequin5.c: In function 'RNAQualListDialog':
sequin5.c:21868:22: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin5.c: In function 'GetRNAFeatureList':
sequin5.c:22057:14: warning: variable 'matches' set but not used [-Wunused-but-set-variable]
Boolean matches;
^
sequin5.c: In function 'RNAQualConvertSwapParseList':
sequin5.c:22189:26: warning: variable 'avd' set but not used [-Wunused-but-set-variable]
ApplyValueData avd;
^
sequin5.c: In function 'RNAQualEditRemoveList':
sequin5.c:22285:20: warning: unused variable 'rval' [-Wunused-variable]
Boolean rval = TRUE;
^
sequin5.c: In function 'GetGBQualSampleName':
sequin5.c:22998:14: warning: variable 'num_feature_choices' set but not used [-Wunused-but-set-variable]
Int4 num_feature_choices;
^
sequin5.c: In function 'ConvertGeneLocusTagToOldLocusTagCallback':
sequin5.c:23233:28: warning: variable 'mp' set but not used [-Wunused-but-set-variable]
LocusTagToOldLocusTagPtr mp;
^
sequin5.c: In function 'GetCombinedCDSLocationCallback':
sequin5.c:23550:21: warning: unused variable 'fcontext' [-Wunused-variable]
SeqMgrFeatContext fcontext;
^
sequin5.c: In function 'NewSegregateBioseqSet':
sequin5.c:26583:22: warning: variable 'p' set but not used [-Wunused-but-set-variable]
PrompT p, p2;
^
sequin5.c: In function 'CompareBulkRows':
sequin5.c:28054:8: warning: variable 'col' set but not used [-Wunused-but-set-variable]
Int4 col;
^
sequin5.c: In function 'ResortBulkEditorRows':
sequin5.c:28321:20: warning: unused variable 'matches' [-Wunused-variable]
ValNodePtr matches = NULL, vnp;
^
sequin5.c:28318:26: warning: unused variable 'last_inserted' [-Wunused-variable]
Int4 row_num, sub_num, last_inserted = 0, comp, col;
^
sequin5.c: In function 'UpdateBulkEdDisplay':
sequin5.c:29402:17: warning: unused variable 'text_len' [-Wunused-variable]
Int4 i, text_len = 0, sub_num;
^
sequin5.c: In function 'AddColumnToRowList':
sequin5.c:30137:11: warning: unused variable 'm' [-Wunused-variable]
Int4 i, m = 0, f = 0, num_columns = 1;
^
sequin5.c: In function 'ApplyBulkEditCommon':
sequin5.c:30562:23: warning: unused variable 'need_redraw' [-Wunused-variable]
Boolean need_redraw = FALSE;
^
sequin5.c: In function 'CopyAllFieldsFromList':
sequin5.c:30917:8: warning: unused variable 'num_full' [-Wunused-variable]
Int4 num_full = 0;
^
sequin5.c: In function 'BulkEditorObjectList':
sequin5.c:32879:22: warning: unused variable 'subtype' [-Wunused-variable]
Uint1 subtype = 0;
^
sequin5.c: In function 'BulkEditor':
sequin5.c:32937:22: warning: variable 'field_list' set but not used [-Wunused-but-set-variable]
BulkEdFieldPtr field_list = NULL;
^
sequin5.c: In function 'GetSpecificHostCorrectionCategory':
sequin5.c:33691:22: warning: unused variable 'fmt' [-Wunused-variable]
CharPtr fmt = "Unable to suggest correction for '%s'";
^
In file included from ../include/netblap3.h:134:0,
from sequin5.c:53:
sequin5.c: At top level:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
In file included from ../include/tax3api.h:51:0,
from sequin5.c:78:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sequin5.c:13071:25: warning: 'ParseFieldSrcFree' defined but not used [-Wunused-function]
static ParseFieldSrcPtr ParseFieldSrcFree (ParseFieldSrcPtr pfsp)
^
sequin5.c:21552:23: warning: 'AECRRNAQualFree' defined but not used [-Wunused-function]
static AECRRNAQualPtr AECRRNAQualFree (AECRRNAQualPtr ap)
^
sequin5.c:27713:13: warning: 'FreeBulkEditorValuesList' defined but not used [-Wunused-function]
static void FreeBulkEditorValuesList (ValNodePtr PNTR values_list, Int4 num_rows, BulkEdFieldPtr field_list)
^
sequin5.c:28245:13: warning: 'FlatCopyRows' defined but not used [-Wunused-function]
static Int4 FlatCopyRows (BulkEditorRowPtr new_rows, BulkEditorRowPtr orig_rows, BulkEdFieldPtr field_list)
^
sequin5.c:28749:28: warning: 'OneFieldBulkEditNew' defined but not used [-Wunused-function]
static OneFieldBulkEditPtr OneFieldBulkEditNew (void)
^
sequin5.c:29002:28: warning: 'TwoFieldBulkEditNew' defined but not used [-Wunused-function]
static TwoFieldBulkEditPtr TwoFieldBulkEditNew (void)
^
sequin5.c:31224:15: warning: 'BulkNucLocationDialog' defined but not used [-Wunused-function]
static DialoG BulkNucLocationDialog (GrouP g, CharPtr name, SeqEntryPtr sep)
^
sequin5.c:31390:16: warning: 'BulkReleaseTrueFalse' defined but not used [-Wunused-function]
static Pointer BulkReleaseTrueFalse (Pointer p)
^
sequin5.c:31401:13: warning: 'BulkSetPseudo' defined but not used [-Wunused-function]
static void BulkSetPseudo (Pointer target, Pointer val)
^
sequin5.c:31412:16: warning: 'BulkGetPseudo' defined but not used [-Wunused-function]
static Pointer BulkGetPseudo (Pointer data)
^
sequin5.c:31877:23: warning: 'GetBulkEditorFieldListForFeature' defined but not used [-Wunused-function]
static BulkEdFieldPtr GetBulkEditorFieldListForFeature (SeqFeatPtr sfp)
^
sequin5.c:32179:16: warning: 'BulkSrcGetOrgModDescTF' defined but not used [-Wunused-function]
static Pointer BulkSrcGetOrgModDescTF (Uint1 data_choice, Pointer data, Uint2 mod_type)
^
sequin5.c:32200:13: warning: 'BulkSrcSetOrgModDescTF' defined but not used [-Wunused-function]
static void BulkSrcSetOrgModDescTF (Pointer target, Pointer data, Uint2 mod_type)
^
sequin5.c: In function 'ResortBulkEditorRows':
sequin5.c:28381:6: warning: 'smallest_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (smallest_pos < row_num - 1) {
^
sequin5.c: In function 'ConvertDescriptorFieldCallback':
sequin5.c:6059:18: warning: 'dst_text' may be used uninitialized in this function [-Wmaybe-uninitialized]
avd.new_text = dst_text;
^
sequin5.c: In function 'ApplyEditConvertRemoveCombo.constprop.163':
sequin5.c:17922:18: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) m,
^
sequin6.c: In function 'CleanupDeleteByTextConvertForm':
sequin6.c:1489:19: warning: variable 'cfp' set but not used [-Wunused-but-set-variable]
ConvertFormPtr cfp;
^
sequin6.c: In function 'RemoveOrgModText':
sequin6.c:3680:35: warning: variable 'next_mod' set but not used [-Wunused-but-set-variable]
OrgModPtr mod, prev_mod = NULL, next_mod;
^
sequin6.c: In function 'GapLocationsFromNs':
sequin6.c:5229:15: warning: variable 'seq_ext' set but not used [-Wunused-but-set-variable]
ValNodePtr seq_ext;
^
sequin6.c:5228:15: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len;
^
sequin6.c: In function 'RemoveTerminalNsFromLocation':
sequin6.c:5772:21: warning: unused variable 'seq_offset' [-Wunused-variable]
Int4 seq_offset = 0, start, stop;
^
sequin6.c: In function 'ApplyBioFeatToList':
sequin6.c:6890:23: warning: variable 'oldscope' set but not used [-Wunused-but-set-variable]
SeqEntryPtr nsep, oldscope;
^
sequin6.c: In function 'CopyContactToAuthors':
sequin6.c:8820:16: warning: unused variable 'list' [-Wunused-variable]
ValNodePtr list = NULL;
^
sequin6.c: In function 'AddCommentsToList':
sequin6.c:14010:22: warning: unused variable 'comment_len' [-Wunused-variable]
Int4 comment_len = 0, num_segments = 0;
^
sequin6.c: In function 'RNAWordsFromString':
sequin6.c:14124:32: warning: variable 'last_pos' set but not used [-Wunused-but-set-variable]
CharPtr last_hit = NULL, last_pos = NULL;
^
sequin6.c:14124:15: warning: variable 'last_hit' set but not used [-Wunused-but-set-variable]
CharPtr last_hit = NULL, last_pos = NULL;
^
sequin6.c: In function 'FeatureEditorActionGroup':
sequin6.c:15192:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin6.c: In function 'DoPartialFeatureProc':
sequin6.c:15455:16: warning: variable 'dash_at_end' set but not used [-Wunused-but-set-variable]
Boolean dash_at_end = FALSE;
^
sequin6.c: In function 'FeatureEditorDoOneAction':
sequin6.c:16047:19: warning: unused variable 'act' [-Wunused-variable]
AECRActionPtr act = NULL;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from sequin6.c:60:
sequin6.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/vibrant.h:133:0,
from ../include/dlogutil.h:48,
from sequin.h:85,
from sequin6.c:45:
sequin6.c:85:20: warning: 'publication_field_alist' defined but not used [-Wunused-variable]
static ENUM_ALIST (publication_field_alist)
^
../include/vibforms.h:61:45: note: in definition of macro 'ENUM_ALIST'
#define ENUM_ALIST(name) Nlm_EnumFieldAssoc name[] = {
^
sequin6.c:123:19: warning: 'cds_short_field_alist' defined but not used [-Wunused-variable]
static ENUM_ALIST(cds_short_field_alist)
^
../include/vibforms.h:61:45: note: in definition of macro 'ENUM_ALIST'
#define ENUM_ALIST(name) Nlm_EnumFieldAssoc name[] = {
^
sequin6.c:154:19: warning: 'rnax_short_field_alist' defined but not used [-Wunused-variable]
static ENUM_ALIST(rnax_short_field_alist)
^
../include/vibforms.h:61:45: note: in definition of macro 'ENUM_ALIST'
#define ENUM_ALIST(name) Nlm_EnumFieldAssoc name[] = {
^
sequin6.c:225:13: warning: 'PopulateParseQualPopup' defined but not used [-Wunused-function]
static void PopulateParseQualPopup (PopuP p)
^
sequin6.c:650:16: warning: 'TrimOffEndQuotes' defined but not used [-Wunused-function]
static Boolean TrimOffEndQuotes (CharPtr trimString,
^
sequin6.c:7713:13: warning: 'SetContactNameFromString' defined but not used [-Wunused-function]
static void SetContactNameFromString (SubmitFormPtr sbfp, CharPtr txt)
^
sequin6.c:15251:13: warning: 'DoPseudoFeatureProc' defined but not used [-Wunused-function]
static void DoPseudoFeatureProc (SeqFeatPtr sfp, Pointer userdata, FilterSetPtr fsp)
^
sequin6.c: In function 'CreateFieldSubfieldDlg.constprop.82':
sequin6.c:575:16: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
AlignObjects (ALIGN_CENTER, (HANDLE) dlg->subfield_dlg[eFieldTypeGene],
^
sequin7.c: In function 'GeneExtendFunc':
sequin7.c:959:18: warning: variable 'grp' set but not used [-Wunused-but-set-variable]
GeneRefPtr grp;
^
sequin7.c: In function 'FinishConvertingToCDS':
sequin7.c:2767:17: warning: variable 'nsep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr nsep;
^
sequin7.c: In function 'SetBestFrame':
sequin7.c:5529:26: warning: variable 'seq_str2' set but not used [-Wunused-but-set-variable]
CharPtr seq_str1, seq_str2;
^
sequin7.c:5529:16: warning: variable 'seq_str1' set but not used [-Wunused-but-set-variable]
CharPtr seq_str1, seq_str2;
^
sequin7.c: In function 'FixFeatureIntervalSeqLoc':
sequin7.c:7054:17: warning: variable 'tmpsip' set but not used [-Wunused-but-set-variable]
SeqIdPtr tmpsip;
^
sequin7.c: In function 'RNABlastOptionNew':
sequin7.c:7592:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Int2 rval;
^
sequin7.c: In function 'GetSubListForRNAStrandCorrection':
sequin7.c:7872:27: warning: variable 'found_id' set but not used [-Wunused-but-set-variable]
Boolean found_id;
^
sequin7.c: In function 'ShowClickableItemListEx':
sequin7.c:10117:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin7.c: In function 'ChooseFeaturesForConversion':
sequin7.c:10258:28: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin7.c: In function 'GetTableOptions':
sequin7.c:14437:30: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin7.c: In function 'RemoveCDSandmRNAForGene':
sequin7.c:14720:27: warning: variable 'prev_xref' set but not used [-Wunused-but-set-variable]
SeqFeatXrefPtr xref, prev_xref, next_xref;
^
sequin7.c: In function 'CombineToCreatePseudoGene':
sequin7.c:14803:48: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| best_left == fcontext.left && best_right < fcontext.right) {
^
sequin7.c: In function 'TrimTaxFix':
sequin7.c:16288:46: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
|| word_break - t->suggested_fix == 10 && StringNICmp (t->suggested_fix, "uncultured ", 11) == 0) {
^
sequin7.c: In function 'FindBestNTrimSites':
sequin7.c:17131:21: warning: unused variable 'trim_list' [-Wunused-variable]
ValNodePtr trim_list = NULL;
^
sequin7.c: In function 'BarcodeBlastOptionNew':
sequin7.c:17374:17: warning: variable 'rval' set but not used [-Wunused-but-set-variable]
Int2 rval;
^
sequin7.c: At top level:
sequin7.c:47:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable]
static char *time_of_compilation = __TIME__;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sequin7.c:74:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sequin7.c:77:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sequin7.c:5092:13: warning: 'RemoveMultipleTitles' defined but not used [-Wunused-function]
static void RemoveMultipleTitles (SeqEntryPtr sep, Pointer mydata, Int4 index, Int2 indent)
^
sequin7.c:7176:16: warning: 'DoesBioseqMatchStringConstraint' defined but not used [-Wunused-function]
static Boolean DoesBioseqMatchStringConstraint (BioseqPtr bsp, StringConstraintXPtr scp)
^
sequin7.c:12852:13: warning: 'RemoveBarcodeKeywordsFromLowTrace' defined but not used [-Wunused-function]
static void RemoveBarcodeKeywordsFromLowTrace (ButtoN b)
^
sequin7.c:14966:13: warning: 'FindBadLatLonSourceFeat' defined but not used [-Wunused-function]
static void FindBadLatLonSourceFeat (SeqFeatPtr sfp, Pointer userdata)
^
sequin7.c:16481:25: warning: 'NTrimIntervalFree' defined but not used [-Wunused-function]
static NTrimIntervalPtr NTrimIntervalFree (NTrimIntervalPtr n)
^
sequin7.c: In function 'CombineToCreatePseudoGene':
sequin7.c:14917:40: warning: 'int_strand' may be used uninitialized in this function [-Wmaybe-uninitialized]
first_sfp->location = SeqLocIntNew (int_left, int_right, int_strand, sip);
^
sequin7.c:14803:48: warning: 'best_right' may be used uninitialized in this function [-Wmaybe-uninitialized]
|| best_left == fcontext.left && best_right < fcontext.right) {
^
sequin7.c:14803:18: warning: 'best_left' may be used uninitialized in this function [-Wmaybe-uninitialized]
|| best_left == fcontext.left && best_right < fcontext.right) {
^
sequin8.c: In function 'PopulateAAPopup':
sequin8.c:1531:20: warning: variable 'first' set but not used [-Wunused-but-set-variable]
Uint1 first;
^
sequin8.c: In function 'UserObjectPtrToUnverifiedDialog':
sequin8.c:4313:28: warning: unused variable 'status' [-Wunused-variable]
Int2 status = 0;
^
sequin8.c: In function 'SelectBestRepeatsFromList':
sequin8.c:8316:18: warning: variable 'best_len' set but not used [-Wunused-but-set-variable]
Int4 best_len;
^
sequin8.c:8311:18: warning: variable 'strand2' set but not used [-Wunused-but-set-variable]
Uint1 strand1, strand2;
^
sequin8.c:8311:9: warning: variable 'strand1' set but not used [-Wunused-but-set-variable]
Uint1 strand1, strand2;
^
sequin8.c: In function 'ExamineAln':
sequin8.c:8832:8: warning: variable 'len' set but not used [-Wunused-but-set-variable]
Int4 len, num_aln = 0;
^
sequin8.c: In function 'GetWindowForReportType':
sequin8.c:15341:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
switch (report_type) {
^
sequin8.c: In function 'SetWindowForReportType':
sequin8.c:15372:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
switch (report_type) {
^
sequin8.c: In function 'GetReportConfigName':
sequin8.c:15390:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
switch (report_type) {
^
sequin8.c: In function 'ScrollToDiscrepancyItem':
sequin8.c:16161:17: warning: variable 'special_flag' set but not used [-Wunused-but-set-variable]
Boolean special_flag = FALSE;
^
sequin8.c: In function 'GetReportEditButtonProc':
sequin8.c:16944:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
switch (report_type) {
^
sequin8.c: In function 'GetReportName':
sequin8.c:16968:3: warning: enumeration value 'eReportTypeTSA' not handled in switch [-Wswitch]
switch (report_type) {
^
sequin8.c: In function 'SortVnpBymRNAPos':
sequin8.c:19000:22: warning: variable 'mrna2' set but not used [-Wunused-but-set-variable]
SeqFeatPtr mrna1, mrna2;
^
sequin8.c:19000:15: warning: variable 'mrna1' set but not used [-Wunused-but-set-variable]
SeqFeatPtr mrna1, mrna2;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sequin8.c:57:
sequin8.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sequin8.c:63:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sequin8.c:452:13: warning: 'ExtendOnePartialFeatureToEndOrGap' defined but not used [-Wunused-function]
static void ExtendOnePartialFeatureToEndOrGap (SeqFeatPtr sfp, Pointer userdata)
^
sequin8.c:664:13: warning: 'FixReadingFrame' defined but not used [-Wunused-function]
static void FixReadingFrame (
^
sequin8.c:1890:18: warning: 'SqnGetBioseqGivenSeqLoc' defined but not used [-Wunused-function]
static BioseqPtr SqnGetBioseqGivenSeqLoc (SeqLocPtr slp, Uint2 entityID)
^
sequin8.c:6725:16: warning: 'CKA_ValidateSeqAlign' defined but not used [-Wunused-function]
static Boolean CKA_ValidateSeqAlign(SeqAlignPtr sap, CKA_AccPtr acc_head, Int4 bioseqlen, ValNodePtr PNTR errors)
^
sequin8.c:6931:13: warning: 'CKA_ShowAln' defined but not used [-Wunused-function]
static void CKA_ShowAln(SeqAlignPtr sap, CKA_AccPtr acc_head)
^
sequin8.c:7259:16: warning: 'DoesRowContainPoint' defined but not used [-Wunused-function]
static Boolean DoesRowContainPoint (SeqAlignRowPtr row, Int4 point)
^
sequin8.c:7711:16: warning: 'DoesFirstRepeatContainAllOtherRepeats' defined but not used [-Wunused-function]
static Boolean DoesFirstRepeatContainAllOtherRepeats (ValNodePtr start, ValNodePtr stop)
^
sequin8.c:8745:20: warning: 'GetNewBlastTPAHistAlignPiece' defined but not used [-Wunused-function]
static SeqAlignPtr GetNewBlastTPAHistAlignPiece (BioseqPtr bsp1, BioseqPtr bsp2)
^
sequin8.c:8768:20: warning: 'GetOldBlastTPAHistAlignPiece' defined but not used [-Wunused-function]
static SeqAlignPtr GetOldBlastTPAHistAlignPiece (BioseqPtr bsp1, BioseqPtr bsp2)
^
sequin8.c:8830:13: warning: 'ExamineAln' defined but not used [-Wunused-function]
static void ExamineAln (SeqAlignPtr sap)
^
sequin8.c:13113:13: warning: 'ShowAssemblyAlignment' defined but not used [-Wunused-function]
static void ShowAssemblyAlignment (SeqAlignPtr salp)
^
sequin8.c:15651:13: warning: 'VisitFeaturesInViewedBioseqs' defined but not used [-Wunused-function]
static void VisitFeaturesInViewedBioseqs (Pointer userdata, VisitFeaturesFunc callback)
^
sequin8.c:19897:13: warning: 'TrimCDSFortRNAOverlap' defined but not used [-Wunused-function]
static void TrimCDSFortRNAOverlap (ValNodePtr item_list)
^
sequin8.c:20204:19: warning: 'DivideClickableItemListByEntityID' defined but not used [-Wunused-function]
static ValNodePtr DivideClickableItemListByEntityID (ValNodePtr clickable_list)
^
sequin9.c: In function 'DoVecScreens':
sequin9.c:633:19: warning: variable 'hits' set but not used [-Wunused-but-set-variable]
Int2 hits;
^
sequin9.c: In function 'AcceptArgumentFormProc':
sequin9.c:1468:18: warning: variable 'choice' set but not used [-Wunused-but-set-variable]
Int2 choice;
^
sequin9.c: In function 'ExtendBothEnds':
sequin9.c:4777:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
BioseqPtr oldbsp;
^
sequin9.c: In function 'Extend5Prime':
sequin9.c:4845:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
BioseqPtr oldbsp;
^
sequin9.c: In function 'Extend3Prime':
sequin9.c:4905:17: warning: variable 'oldbsp' set but not used [-Wunused-but-set-variable]
BioseqPtr oldbsp;
^
sequin9.c: In function 'FixProteinString':
sequin9.c:5116:16: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start, stop, new_stop, prot_len;
^
sequin9.c: In function 'ShiftStopForLengthChange':
sequin9.c:5193:13: warning: variable 'start' set but not used [-Wunused-but-set-variable]
Int4 start, stop, new_stop;
^
sequin9.c: In function 'ExtendProtein5':
sequin9.c:5386:23: warning: variable 'new_stop' set but not used [-Wunused-but-set-variable]
Int4 stop, new_stop;
^
sequin9.c: In function 'PrepareUpdateAlignmentForProtein':
sequin9.c:5914:17: warning: variable 'changed_frame' set but not used [-Wunused-but-set-variable]
Boolean changed_frame;
^
sequin9.c: In function 'DrawAlignDiffs':
sequin9.c:7508:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, i;
^
sequin9.c:7508:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, i;
^
sequin9.c: In function 'MakeAlignDetails':
sequin9.c:7643:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable]
Int4 aln_length;
^
sequin9.c: In function 'MakeAlignSequence':
sequin9.c:7692:56: warning: variable 'to' set but not used [-Wunused-but-set-variable]
Int4 aln_length, len, lens, start, stop, from, to, i, j;
^
sequin9.c:7692:50: warning: variable 'from' set but not used [-Wunused-but-set-variable]
Int4 aln_length, len, lens, start, stop, from, to, i, j;
^
sequin9.c: In function 'DrawUpdateAlignmentDiffs':
sequin9.c:13384:20: warning: variable 'len2' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, i;
^
sequin9.c:13384:14: warning: variable 'len1' set but not used [-Wunused-but-set-variable]
Int4 len1, len2, i;
^
sequin9.c: In function 'MakeAlignmentDetailsPicture':
sequin9.c:13469:12: warning: variable 'aln_length' set but not used [-Wunused-but-set-variable]
Int4 aln_length;
^
sequin9.c: In function 'MakeUpdateAlignmentSequenceString':
sequin9.c:13551:44: warning: variable 'to' set but not used [-Wunused-but-set-variable]
Int4 len, lens, start, stop, from, to, i, j;
^
sequin9.c:13551:38: warning: variable 'from' set but not used [-Wunused-but-set-variable]
Int4 len, lens, start, stop, from, to, i, j;
^
sequin9.c: In function 'SetPreviewSequenceSelectionByPosition':
sequin9.c:15725:46: warning: variable 'curr_scroll' set but not used [-Wunused-but-set-variable]
Int4 prevrow, curr_scroll, max_scroll;
^
sequin9.c: In function 'DoTestUpdateOneSequence':
sequin9.c:16781:30: warning: variable 'update_bsp' set but not used [-Wunused-but-set-variable]
BioseqPtr update_bsp = NULL;
^
sequin9.c:16780:30: warning: variable 'update_entityID' set but not used [-Wunused-but-set-variable]
Uint2 update_entityID = 0;
^
sequin9.c: In function 'UpdateAllSequences':
sequin9.c:17071:30: warning: unused variable 'update_entityID' [-Wunused-variable]
Uint2 update_entityID = 0;
^
sequin9.c:17070:30: warning: unused variable 'update_bsp' [-Wunused-variable]
BioseqPtr update_bsp = NULL;
^
sequin9.c: In function 'CleanupUpdateMultiSequence':
sequin9.c:17390:30: warning: unused variable 'entityIDList' [-Wunused-variable]
ValNodePtr entityIDList = NULL;
^
sequin9.c: In function 'UpdateSequenceViaDownload':
sequin9.c:18717:15: warning: variable 'is_na' set but not used [-Wunused-but-set-variable]
Boolean is_na;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from sequin9.c:47:
sequin9.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from sequin9.c:50:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from sequin9.c:50:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from sequin9.c:50:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from sequin9.c:50:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/sqnutils.h:51:0,
from ../include/alignmgr2.h:111,
from ../include/actutils.h:105,
from sequin9.c:56:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
sequin9.c:215:13: warning: 'TruncateCDS' declared 'static' but never defined [-Wunused-function]
static void TruncateCDS (SeqFeatPtr sfp, Uint1 frame, BioseqPtr pbsp);
^
sequin9.c:1405:16: warning: 'StrSaveNoNullEncodeSpaces' defined but not used [-Wunused-function]
static CharPtr StrSaveNoNullEncodeSpaces (CharPtr from)
^
sequin9.c:17033:29: warning: 'FeatureUpdateNew' defined but not used [-Wunused-function]
static FeatureUpdateInfoPtr FeatureUpdateNew (BioseqPtr orig_bsp, BioseqPtr update_bsp)
^
sequin9.c: In function 'TruncateSeqGraphValues':
sequin9.c:3131:14: warning: 'fmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (((FloatHiPtr)new_values)[newpos] > fmax) {
^
sequin9.c:3134:14: warning: 'fmin' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (((FloatHiPtr)new_values)[newpos] < fmin) {
^
sequin9.c: In function 'UnmatchedSequenceDialog':
sequin9.c:15996:16: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
ObjectRect (b, &r);
^
sequin9.c: In function 'PrepareUpdateAlignmentForProtein':
sequin9.c:6026:37: warning: 'gene_sfp' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (correct_cds_genes && gene_sfp != NULL) {
^
sequin10.c: In function 'ApplyTableQuals':
sequin10.c:4530:26: warning: variable 'fqtd' set but not used [-Wunused-but-set-variable]
FeatureQualTableData fqtd;
^
sequin10.c: In function 'EraseAllFieldsWhenBlank':
sequin10.c:5591:19: warning: unused variable 'columns' [-Wunused-variable]
ValNodePtr columns = NULL;
^
sequin10.c: In function 'ExternalSourceQualifierTableReader':
sequin10.c:6515:22: warning: variable 'any_valid' set but not used [-Wunused-but-set-variable]
Boolean any_valid = FALSE;
^
sequin10.c: In function 'LoadFeatureFieldTable':
sequin10.c:8816:24: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin10.c: In function 'OrgModListsMatch':
sequin10.c:10557:14: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
sequin10.c: In function 'SubtypeListsMatch':
sequin10.c:10750:14: warning: variable 'found' set but not used [-Wunused-but-set-variable]
Boolean found;
^
sequin10.c: In function 'RetranscribemRNA':
sequin10.c:12121:21: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
sequin10.c: In function 'TrimSequencesByAlignment':
sequin10.c:12516:25: warning: variable 'b' set but not used [-Wunused-but-set-variable]
ButtoN b;
^
sequin10.c: In function 'AddOneFeatureBetween':
sequin10.c:12907:14: warning: variable 'seqfeattype' set but not used [-Wunused-but-set-variable]
Int4 seqfeattype;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from sequin10.c:63:
sequin10.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from sequin10.c:68:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
sequin10.c:1452:19: warning: 'OrgModTableColumnListFree' defined but not used [-Wunused-function]
static ValNodePtr OrgModTableColumnListFree (ValNodePtr vnp)
^
sequin10.c:3013:19: warning: 'FreeTableData' defined but not used [-Wunused-function]
static ValNodePtr FreeTableData (ValNodePtr lines)
^
sequin10.c:8884:16: warning: 'GetRevSectionSequence' defined but not used [-Wunused-function]
static Pointer GetRevSectionSequence (Uint1 data_choice, Pointer data, Pointer metadata)
^
sequin10.c:8902:16: warning: 'GetRevSectionInterval' defined but not used [-Wunused-function]
static Pointer GetRevSectionInterval (Uint1 data_choice, Pointer data, Pointer metadata)
^
sequin10.c: In function 'CreateOneProteinId':
sequin10.c:15361:16: warning: 'sip_local' may be used uninitialized in this function [-Wmaybe-uninitialized]
SeqIdWrite (sip_local, id1, PRINTID_REPORT, sizeof (id1) - 1);
^
sequin10.c: In function 'AutoDefBaseFormCommon':
sequin10.c:763:12: warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized]
k2 = HiddenGroup (k, 2, 0, NULL);
^
sequin10.c:716:24: note: 'k' was declared here
GrouP p, g1, s1, s2, k, k2;
^
: Psequin
gcc -o sbtedit -I. -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \
-lncbidesk -lncbitool -lvibrant -lncbiobj -lncbi
sbtedit.c: In function 'LookupTaxonomyFunc':
sbtedit.c:604:15: warning: variable 'rsult' set but not used [-Wunused-but-set-variable]
Int4 rsult;
^
sbtedit.c: At top level:
sbtedit.c:48:14: warning: 'date_of_compilation' defined but not used [-Wunused-variable]
static char *date_of_compilation = __DATE__;
^
sbtedit.c:49:14: warning: 'time_of_compilation' defined but not used [-Wunused-variable]
static char *time_of_compilation = __TIME__;
^
: sbtedit
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c
udvmain.c: In function 'Nlm_Main':
udvmain.c:232:8: warning: unused variable 'rcL' [-Wunused-variable]
RecT rcL;
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from udvmain.c:81:
udvmain.c: At top level:
../include/objmmdb1.h:206:57: warning: 'VersionOfDatabase_version_of_databaseFree' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
^
In file included from ../include/strimprt.h:72:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from udvmain.c:81:
../include/objmmdb1.h:207:57: warning: 'VersionOfDatabase_version_of_databaseAsnRead' declared 'static' but never defined [-Wunused-function]
static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb1.h:208:24: warning: 'VersionOfDatabase_version_of_databaseAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:73:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from udvmain.c:81:
../include/objmmdb2.h:151:43: warning: 'Coordinates_coordinatesFree' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
^
../include/objmmdb2.h:152:43: warning: 'Coordinates_coordinatesAsnRead' declared 'static' but never defined [-Wunused-function]
static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:153:24: warning: 'Coordinates_coordinatesAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:247:35: warning: 'Surface_surfaceFree' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
^
../include/objmmdb2.h:248:35: warning: 'Surface_surfaceAsnRead' declared 'static' but never defined [-Wunused-function]
static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb2.h:249:24: warning: 'Surface_surfaceAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/strimprt.h:74:0,
from ../include/mmdbapi1.h:234,
from ../include/accentr.h:143,
from udvmain.c:81:
../include/objmmdb3.h:287:37: warning: 'Location_locationFree' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
^
../include/objmmdb3.h:288:37: warning: 'Location_locationAsnRead' declared 'static' but never defined [-Wunused-function]
static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:289:24: warning: 'Location_locationAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:310:37: warning: 'Property_propertyFree' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
^
../include/objmmdb3.h:311:37: warning: 'Property_propertyAsnRead' declared 'static' but never defined [-Wunused-function]
static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:312:24: warning: 'Property_propertyAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:419:33: warning: 'Region_regionFree' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
^
../include/objmmdb3.h:420:33: warning: 'Region_regionAsnRead' declared 'static' but never defined [-Wunused-function]
static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objmmdb3.h:421:24: warning: 'Region_regionAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
^
gcc -o udv -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF udvmain.o -lvibnet -lncbidesk \
-lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c
ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' [enabled by default]
extern Args DDV_myargs[NUMARGS] = {
^
ddvmain.c:267:16: warning: 'DDV_UseNetwork' defined but not used [-Wunused-function]
static Boolean DDV_UseNetwork(void)
^
ddvmain.c: In function 'Nlm_Main':
ddvmain.c:441:5: warning: 'UseNetwork' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (UseNetwork && EntrezIsInited()) EntrezBioseqFetchDisable();
^
gcc -o ddv -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF ddvmain.o -lvibnet -lncbidesk -lddvlib \
-lncbiNacc -lnetentr -lvibrant -lncbiobj -lncbi
gcc -g -o blastcl3 -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF -DBLAST_CS_API blastall.c \
-lblastapi -lblast -lnetblast -lncbitool -lncbiobj -lncbi
blastall.c: In function 'Main_old':
blastall.c:1812:26: warning: variable 'nuc_concat' set but not used [-Wunused-but-set-variable]
Boolean concat_done, nuc_concat;
^
blastall.c:1800:23: warning: variable 'handle_results' set but not used [-Wunused-but-set-variable]
int (LIBCALLBACK *handle_results)(VoidPtr srch);
^
blastall.c:1795:20: warning: unused variable 'index' [-Wunused-variable]
Int4 num_bsps, index;
^
blastall.c:1794:42: warning: unused variable 'seqalignp' [-Wunused-variable]
SeqAlignPtr sap, next_seqalign, PNTR seqalignp;
^
blastall.c: In function 'Nlm_Main':
blastall.c:2963:13: warning: unused variable 'use_new_engine' [-Wunused-variable]
Boolean use_new_engine=FALSE;
^
In file included from ../include/sqnutils.h:51:0,
from blastall.c:727:
blastall.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
In file included from blastall.c:733:0:
../include/objblst3.h:180:35: warning: 'Cutoff2_cutoff2Free' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
^
../include/objblst3.h:181:35: warning: 'Cutoff2_cutoff2AsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:182:24: warning: 'Cutoff2_cutoff2AsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:199:33: warning: 'Cutoff_cutoffFree' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
^
../include/objblst3.h:200:33: warning: 'Cutoff_cutoffAsnRead' declared 'static' but never defined [-Wunused-function]
static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objblst3.h:201:24: warning: 'Cutoff_cutoffAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/netblap3.h:134:0,
from blastall.c:734:
../include/blstspc.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "blstspc.h23";
^
../include/blstspc.h:227:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/blstspc.h:228:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/blstspc.h:229:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
blastall.c:2931:1: warning: 'readdb_use_new_blast' defined but not used [-Wunused-function]
readdb_use_new_blast(char* dbname)
^
blastall.c: In function 'Main_old':
blastall.c:2410:74: warning: 'fake_bsp_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_bsp = (num_queries>0) ? *(fake_bsp_arr + bsp_iter) : query_bsp;
^
blastall.c:2715:40: warning: 'seq_annot_arr' may be used uninitialized in this function [-Wmaybe-uninitialized]
*(seq_annot_arr + sap_iter) = seqannot;
^
blastall.c:2609:69: warning: 'sap_array' may be used uninitialized in this function [-Wmaybe-uninitialized]
curr_seqalign = (num_queries>0) ? *(sap_array + sap_iter) : seqalign;
^
blastall.c:2618:18: warning: 'next_seqalign' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (seqalign) {
^
blastall.c:2895:38: warning: 'err_ticket' may be used uninitialized in this function [-Wmaybe-uninitialized]
BlastDeleteUserErrorString(err_ticket);
^
blastall.c:2812:33: warning: 'xml_aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
BXMLPrintOutput(xml_aip, NULL, options, blast_program,
^
gcc -g -o taxblast -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF taxblast_main.c \
-lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool \
-lncbiobj -lncbi -lm
gcc -g -o idfetch -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lncbiobj -lncbi
idfetch.c: In function 'Nlm_Main':
idfetch.c:354:46: warning: variable 'any_type' set but not used [-Wunused-but-set-variable]
found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
^
idfetch.c:354:28: warning: variable 'dna_type' set but not used [-Wunused-but-set-variable]
found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
^
idfetch.c: In function 'IdFetch_func':
idfetch.c:828:3: warning: missing braces around initializer [-Wmissing-braces]
SeqId si={SEQID_GI,0,0};
^
idfetch.c:828:3: warning: (near initialization for 'si.data') [-Wmissing-braces]
idfetch.c:835:10: warning: variable 'group_segs' set but not used [-Wunused-but-set-variable]
Uint1 group_segs;
^
idfetch.c: In function 'BEGetUidsFromQuery':
idfetch.c:1089:14: warning: unused variable 'e2rp' [-Wunused-variable]
E2ReplyPtr e2rp;
^
idfetch.c: In function 'IdFetch_func':
idfetch.c:937:22: warning: 'gi_state' may be used uninitialized in this function [-Wmaybe-uninitialized]
id_print_gi_state(gi_state,buf,sizeof(buf));
^
idfetch.c: In function 'Nlm_Main':
idfetch.c:497:13: warning: 'type_int' may be used uninitialized in this function [-Wmaybe-uninitialized]
Int4 tgi = TryGetGi( type_int, tacc, NULL, 0);
^
idfetch.c:519:10: warning: 'sip' may be used uninitialized in this function [-Wmaybe-uninitialized]
gi = ID1ArchGIGet (sip);
^
gcc -o bl2seq -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool \
-lncbiid1 -lncbiobj -lncbi
bl2seq.c: In function 'BioseqFromAccession':
bl2seq.c:331:10: warning: unused variable 'dummy_ptr' [-Wunused-variable]
char* dummy_ptr = NULL;
^
bl2seq.c:330:10: warning: unused variable 'defline' [-Wunused-variable]
char* defline = NULL;
^
bl2seq.c:329:10: warning: unused variable 'buf' [-Wunused-variable]
Uint1 buf[512];
^
bl2seq.c:328:17: warning: unused variable 'buf_length' [-Wunused-variable]
Int2 retval, buf_length=512;
^
bl2seq.c:328:9: warning: unused variable 'retval' [-Wunused-variable]
Int2 retval, buf_length=512;
^
bl2seq.c:327:15: warning: unused variable 'spp' [-Wunused-variable]
SeqPortPtr spp;
^
bl2seq.c:322:24: warning: unused variable 'number' [-Wunused-variable]
Int4 version=0, gi, number;
^
bl2seq.c: In function 'Main_new':
bl2seq.c:803:21: warning: unused variable 'seqalign' [-Wunused-variable]
SeqAlignPtr seqalign=NULL;
^
In file included from ../include/sqnutils.h:51:0,
from bl2seq.c:305:
bl2seq.c: At top level:
../include/objentgene.h:176:33: warning: 'Method_methodFree' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
^
../include/objentgene.h:177:33: warning: 'Method_methodAsnRead' declared 'static' but never defined [-Wunused-function]
static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objentgene.h:178:24: warning: 'Method_methodAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
^
gcc -g -o asn2gb -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asn2gb.c -lncbitool -lncbiobj -lncbi
asn2gb.c:967:13: warning: 'FreeUnpubAffil' defined but not used [-Wunused-function]
static void FreeUnpubAffil (
^
asn2gb.c:1290:13: warning: 'CheckOrder' defined but not used [-Wunused-function]
static void CheckOrder (
^
asn2gb.c: In function 'Nlm_Main':
asn2gb.c:1824:9: warning: 'entityID' may be used uninitialized in this function [-Wmaybe-uninitialized]
sfp = SeqMgrGetDesiredFeature (entityID, 0, itemID, 0, NULL, NULL);
^
asn2gb.c:1774:15: note: 'entityID' was declared here
Uint2 entityID;
^
gcc -o tbl2asn -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lncbiobj -lncbi
tbl2asn.c: In function 'ProcessOneAnnot':
tbl2asn.c:2529:15: warning: variable 'sep' set but not used [-Wunused-but-set-variable]
SeqEntryPtr sep;
^
tbl2asn.c: In function 'MakeOneRnaTitle':
tbl2asn.c:5123:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable]
SeqFeatPtr cds;
^
tbl2asn.c: In function 'FindSingleNucleotideOrNucProtSetInBioseqInSet':
tbl2asn.c:6932:30: warning: variable 'single_result' set but not used [-Wunused-but-set-variable]
SeqEntryPtr single = NULL, single_result;
^
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr.h:266,
from ../include/aliparse.h:15,
from tbl2asn.c:65:
tbl2asn.c: At top level:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from ../include/tax3api.h:51:0,
from tbl2asn.c:68:
../include/objtax3.h:183:31: warning: 'Value_valueFree' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
^
../include/objtax3.h:184:31: warning: 'Value_valueAsnRead' declared 'static' but never defined [-Wunused-function]
static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objtax3.h:185:24: warning: 'Value_valueAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
^
tbl2asn.c:2617:16: warning: 'ExceptionExplainsMismatch' defined but not used [-Wunused-function]
static Boolean ExceptionExplainsMismatch (CharPtr except_text)
^
tbl2asn.c: In function 'DBLinkFieldsConflict':
tbl2asn.c:2130:40: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (CompareBioProjects (cpp1[i], field2->data.ptrvalue) == 0) {
^
tbl2asn.c:2092:18: note: 'i' was declared here
Int4 i;
^
gcc -g -o gene2xml -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF gene2xml.c -lncbiobj -lncbi
gcc -g -o entrez2 -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF entrez2.c -lncbidesk \
-lncbiobj -lvibrant -lncbi
entrez2.c: In function 'Nlm_Main':
entrez2.c:866:12: warning: variable 'server' set but not used [-Wunused-but-set-variable]
CharPtr server = "www.ncbi.nlm.nih.gov";
^
entrez2.c:864:12: warning: variable 'port' set but not used [-Wunused-but-set-variable]
Uint2 port = 2441;
^
entrez2.c:863:12: warning: variable 'path' set but not used [-Wunused-but-set-variable]
CharPtr path = "/entrez/utils/entrez2server.fcgi";
^
entrez2.c: At top level:
entrez2.c:724:13: warning: 'AboutProc' defined but not used [-Wunused-function]
static void AboutProc (IteM i)
^
: entrez2
gcc -g -o gbseqget -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF gbseqget.c -lncbiobj -lncbi
gcc -g -o asn2all -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiobj -lncbi \
-lpthread
asn2all.c: In function 'DoLockFarComponents':
asn2all.c:67:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
asn2all.c:67:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
gcc -o asn2asn -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asn2asn.c -lncbiobj -lncbi
gcc -g -o asn2fsa -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o \
-lncbitool -lncbiobj -lncbi -lpthread
asn2fsa.c: In function 'AddBspToList':
asn2fsa.c:216:15: warning: variable 'vnp' set but not used [-Wunused-but-set-variable]
ValNodePtr vnp;
^
asn2fsa.c: In function 'DoLockFarComponents':
asn2fsa.c:406:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
asn2fsa.c:406:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
gcc -g -o asndisc -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \
-lncbitool -lncbiobj -lncbi -lpthread
asndisc.c: In function 'ProcessMultipleRecord':
asndisc.c:728:19: warning: variable 'memory_usage' set but not used [-Wunused-but-set-variable]
Boolean memory_usage = FALSE;
^
asndisc.c:726:19: warning: variable 'detailed_report' set but not used [-Wunused-but-set-variable]
Boolean detailed_report = FALSE;
^
asndisc.c:722:19: warning: variable 'subcit' set but not used [-Wunused-but-set-variable]
SeqDescrPtr subcit = NULL;
^
gcc -o asnmacro -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool \
-lncbiobj -lncbi
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/actutils.h:105,
from asnmacro.c:54:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
In file included from asnmacro.c:57:0:
../include/asnmacro.h:12:15: warning: 'asnfilename' defined but not used [-Wunused-variable]
static char * asnfilename = "asnmacro.h11";
^
../include/asnmacro.h:1325:23: warning: 'avn' defined but not used [-Wunused-variable]
static AsnValxNodePtr avn = avnx;
^
../include/asnmacro.h:1326:19: warning: 'at' defined but not used [-Wunused-variable]
static AsnTypePtr at = atx;
^
../include/asnmacro.h:1327:21: warning: 'amp' defined but not used [-Wunused-variable]
static AsnModulePtr amp = ampx;
^
asnmacro.c:147:20: warning: 'GlobalAlign2Seq' defined but not used [-Wunused-function]
static SeqAlignPtr GlobalAlign2Seq (BioseqPtr bsp1, BioseqPtr bsp2, BoolPtr revcomp)
^
asnmacro.c: In function 'AsnIoFromOutputStream':
asnmacro.c:233:14: warning: 'aip' may be used uninitialized in this function [-Wmaybe-uninitialized]
AsnIoPtr aip;
^
gcc -g -o asnval -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiobj -lncbi \
-lpthread
asnval.c: In function 'DoLockFarComponents':
asnval.c:556:27: warning: variable 'stop_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
asnval.c:556:15: warning: variable 'start_time' set but not used [-Wunused-but-set-variable]
time_t start_time, stop_time;
^
asnval.c: In function 'ReportBadTaxID':
asnval.c:1049:5: warning: zero-length gnu_printf format string [-Wformat-zero-length]
sprintf (buf1, "");
^
asnval.c:1058:5: warning: zero-length gnu_printf format string [-Wformat-zero-length]
sprintf (buf2, "");
^
gcc -o cleanasn -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF cleanasn.c -lncbitool -lncbiobj -lncbi
cleanasn.c: In function 'JournalIsPresent':
cleanasn.c:8001:14: warning: variable 'is_issn' set but not used [-Wunused-but-set-variable]
Boolean is_issn = FALSE;
^
cleanasn.c: In function 'RemoveGIProc':
cleanasn.c:8305:18: warning: variable 'nextid' set but not used [-Wunused-but-set-variable]
SeqIdPtr nextid, sip;
^
cleanasn.c: At top level:
cleanasn.c:3854:13: warning: 'NormalizeSegSetTitle' defined but not used [-Wunused-function]
static void NormalizeSegSetTitle (
^
cleanasn.c:3905:13: warning: 'CountParts' defined but not used [-Wunused-function]
static void CountParts (
^
cleanasn.c:4063:13: warning: 'PrintPartsTitle' defined but not used [-Wunused-function]
static void PrintPartsTitle (
^
cleanasn.c:4076:13: warning: 'PrintSegSeqTitleBefore' defined but not used [-Wunused-function]
static void PrintSegSeqTitleBefore (
^
cleanasn.c:4096:13: warning: 'PrintSegSeqTitleAfter' defined but not used [-Wunused-function]
static void PrintSegSeqTitleAfter (
^
cleanasn.c:4116:13: warning: 'FindOneCds' defined but not used [-Wunused-function]
static void FindOneCds (
^
cleanasn.c:6613:19: warning: 'DuplicateStringList' defined but not used [-Wunused-function]
static ValNodePtr DuplicateStringList (
^
cleanasn.c:7647:13: warning: 'DoUnpublishedReport' defined but not used [-Wunused-function]
static void DoUnpublishedReport (
^
cleanasn.c:9911:16: warning: 'PvtStrToLong' defined but not used [-Wunused-function]
static Boolean PvtStrToLong (CharPtr str, Int4Ptr longval)
^
cleanasn.c:9952:13: warning: 'AccessionToGi' defined but not used [-Wunused-function]
static Int4 AccessionToGi (CharPtr string)
^
cleanasn.c: In function 'RemoveFeatEvInf':
cleanasn.c:585:9: warning: 'nextqual' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (gbq != NULL) {
^
gcc -g -o insdseqget -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF insdseqget.c -lncbiobj -lncbi
gcc -g -o nps2gps -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lncbiobj -lncbi
nps2gps.c: In function 'LclMakeOneRnaTitle':
nps2gps.c:417:22: warning: variable 'cds' set but not used [-Wunused-but-set-variable]
SeqFeatPtr cds;
^
nps2gps.c: In function 'LoopThroughCDSs':
nps2gps.c:910:22: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Int2 count;
^
nps2gps.c: At top level:
nps2gps.c:584:17: warning: 'MakeIdFromLocusTag' defined but not used [-Wunused-function]
static SeqIdPtr MakeIdFromLocusTag (
^
gcc -o spidey -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \
-lncbiobj -lncbi
In file included from ../include/samutil.h:234:0,
from ../include/alignmgr2.h:114,
from ../include/spidey.h:103,
from spideymain.c:80:
../include/objalignloc.h:80:27: warning: 'Loc_locFree' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
^
../include/objalignloc.h:81:27: warning: 'Loc_locAsnRead' declared 'static' but never defined [-Wunused-function]
static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
^
../include/objalignloc.h:82:24: warning: 'Loc_locAsnWrite' declared 'static' but never defined [-Wunused-function]
static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
^
gcc -g -o trna2sap -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF trna2sap.c -lncbiobj -lncbi
trna2sap.c: In function 'ProcessOneRecord':
trna2sap.c:290:28: warning: unused variable 'entityID' [-Wunused-variable]
Uint2 datatype, entityID = 0;
^
trna2sap.c: In function 'Nlm_Main':
trna2sap.c:460:12: warning: variable 'tsp' set but not used [-Wunused-but-set-variable]
T2SPtr tsp;
^
gcc -g -o trna2tbl -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF trna2tbl.c
trna2tbl.c: In function 'RunTrnaScan':
trna2tbl.c:142:13: warning: unused variable 'str' [-Wunused-variable]
Char str [80];
^
trna2tbl.c:139:13: warning: unused variable 'speed' [-Wunused-variable]
CharPtr speed;
^
trna2tbl.c:127:13: warning: unused variable 'cmmd' [-Wunused-variable]
Char cmmd [256];
^
trna2tbl.c: At top level:
trna2tbl.c:232:1: warning: return type defaults to 'int' [-Wreturn-type]
main (int argc, char *argv[])
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c
cn3dmain.c: In function 'OpenMimeFile':
cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment]
/* the Web browsers on other platforms get upset if you delete the file, */
^
cn3dmain.c: In function 'NetConfigureProc':
cn3dmain.c:267:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable]
Boolean netCurrentlyOn = FALSE;
^
cn3dmain.c: In function 'Cn3D_PrintImage':
cn3dmain.c:288:10: warning: variable 'pmldVec' set but not used [-Wunused-but-set-variable]
PMLD pmldVec = NULL;
^
cn3dmain.c:284:11: warning: unused variable 'pdnmlFirst' [-Wunused-variable]
PDNML pdnmlFirst = NULL;
^
cn3dmain.c: In function 'Nlm_Main':
cn3dmain.c:334:13: warning: unused variable 'netCurrentlyOn' [-Wunused-variable]
Boolean netCurrentlyOn = FALSE;
^
cn3dmain.c: At top level:
cn3dmain.c:246:25: warning: 'seqedprocs' defined but not used [-Wunused-variable]
static SeqEditViewProcs seqedprocs;
^
gcc -c -g -O2 -Wall -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF netentcf.c -o netentcf
gcc -o Cn3D -g -O2 -Wall -I../include -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \
-lddvlib -lncbimmdb -lncbiNacc -lnetentr \
-lvibrantOGL -lncbiobj -lncbi
make[2]: Leaving directory `/«PKGBUILDDIR»/build'
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory `/«PKGBUILDDIR»'
install -d debian/tmp/usr/lib/arm-linux-gnueabihf
install -m 644 lib/* shlib/*.so.6.1.20120620 debian/tmp/usr/lib/arm-linux-gnueabihf
for x in ncbiacc ncbiCacc netentr; do \
rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \
ln -s libncbiNacc.so.6 \
debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \
ln -s libncbiNacc.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \
done
for x in ncbicn3d vibrant; do \
rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6.1.20120620 && \
ln -s lib${x}OGL.so.6 \
debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so.6 && \
ln -s lib${x}OGL.so debian/tmp/usr/lib/arm-linux-gnueabihf/lib$x.so; \
done
rm -f debian/tmp/usr/lib/arm-linux-gnueabihf/libregexp.*
cd debian/tmp/usr/lib/arm-linux-gnueabihf && \
for f in *.so.6.1.20120620; do \
base=`basename $f .so.6.1.20120620` && \
ln -s $f $base.so.6 && \
ln -s $f $base.so; \
done
install -d debian/tmp/usr/include/ncbi
cp -LRp include/* debian/tmp/usr/include/ncbi
cd debian/tmp/usr/include/ncbi && \
rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h
find debian/tmp/usr/include -type f | xargs chmod 644
install -d debian/tmp/usr/bin
install `find build -type f -perm /111 -print` debian/tmp/usr/bin
rm -f debian/tmp/usr/bin/*test*
rm -f debian/tmp/usr/bin/*demo*
rm -f debian/tmp/usr/bin/dosimple
rm -f debian/tmp/usr/bin/ncbisort
rm -f debian/tmp/usr/bin/cdscan
rm -f debian/tmp/usr/bin/entrcmd
rm -f debian/tmp/usr/bin/blast.REAL
mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0
mv debian/tmp/usr/bin/blast debian/tmp/usr/bin/blast2
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_install -a
debian/rules override_dh_installdocs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installdocs
install -m 644 config/README \
debian/libncbi6/usr/share/doc/libncbi6/README.config
install -m 644 network/nsclilib/readme \
debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg
install -m 644 doc/fa2htgs/README \
debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs
install -m 644 sequin/README \
debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_installchangelogs
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_installchangelogs -k README
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_link # otherwise runs too late to influence debian/installman
debian/installman blast2
debian/installman blast2 blast
debian/installman ncbi-tools-bin
debian/installman ncbi-tools-x11
dh_installman
make[1]: Leaving directory `/«PKGBUILDDIR»'
debian/rules override_dh_installmenu
make[1]: Entering directory `/«PKGBUILDDIR»'
debian/makemenu debian/ncbi-tools-x11.install
debian/makemenu: Warning: No .desktop information for sbtedit
debian/makemenu -v debian/ncbi-tools-bin.install
debian/makemenu -v debian/blast2.install
dh_installmenu
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_installmime -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
debian/rules override_dh_strip
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_strip -plibncbi6 --dbg-package=libncbi6-dbg
dh_strip -plibvibrant6b --dbg-package=libvibrant6b-dbg
dh_strip -Nlibncbi6 -Nlibvibrant6b
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
debian/rules override_dh_gencontrol
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_gencontrol -pblast2 -- -v1:2.2.26.20120620-7
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_gencontrol -Nblast2
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_md5sums -a
debian/rules override_dh_builddeb
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme
dh_builddeb: No packages to build.
dh_builddeb -Nncbi-rrna-data
dpkg-deb: building package `libncbi6-dbg' in `../libncbi6-dbg_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `libncbi6-dev' in `../libncbi6-dev_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `ncbi-tools-bin' in `../ncbi-tools-bin_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `libncbi6' in `../libncbi6_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `ncbi-tools-x11' in `../ncbi-tools-x11_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `blast2' in `../blast2_2.2.26.20120620-7_armhf.deb'.
dpkg-deb: building package `libvibrant6b' in `../libvibrant6b_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `libvibrant6-dev' in `../libvibrant6-dev_6.1.20120620-7_armhf.deb'.
dpkg-deb: building package `libvibrant6b-dbg' in `../libvibrant6b-dbg_6.1.20120620-7_armhf.deb'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../ncbi-tools6_6.1.20120620-7_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build ncbi-tools6-6.1.20120620
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20131013-0441
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
ncbi-tools6_6.1.20120620-7_armhf.changes:
─────────────────────────────────────────
Format: 1.8
Date: Tue, 01 Oct 2013 10:58:03 -0400
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev libncbi6-dbg ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 blast2 libvibrant6b libvibrant6-dev libvibrant6b-dbg
Architecture: armhf
Version: 6.1.20120620-7
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Aaron M. Ucko <ucko@debian.org>
Description:
blast2 - Basic Local Alignment Search Tool
libncbi6 - NCBI libraries for biology applications
libncbi6-dbg - NCBI libraries for biology applications (debugging symbols)
libncbi6-dev - NCBI libraries for biology applications (development files)
libvibrant6-dev - NCBI libraries for graphic biology applications (development file
libvibrant6b - NCBI libraries for graphic biology applications
libvibrant6b-dbg - NCBI libraries for graphic biology applications (debugging symbol
ncbi-data - Platform-independent data for the NCBI toolkit
ncbi-rrna-data - large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 724777
Changes:
ncbi-tools6 (6.1.20120620-7) unstable; urgency=low
.
* debian/rules: Use find -perm /..., not deprecated +.... (Closes: #724777.)
* debian/.gitignore: Belatedly update for switch to libvibrant6b.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
blast2_2.2.26.20120620-7_armhf.deb
──────────────────────────────────
new debian package, version 2.0.
size 643630 bytes: control archive=2313 bytes.
868 bytes, 21 lines control
3180 bytes, 51 lines md5sums
185 bytes, 7 lines * postinst #!/bin/sh
160 bytes, 5 lines * postrm #!/bin/sh
Package: blast2
Source: ncbi-tools6 (6.1.20120620-7)
Version: 1:2.2.26.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1071
Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.7)
Suggests: libvibrant6b, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11
Conflicts: ncbi-blast
Section: science
Priority: optional
Multi-Arch: foreign
Homepage: http://www.ncbi.nih.gov/BLAST/
Description: Basic Local Alignment Search Tool
The famous sequence alignment program. This is "official" NCBI version,
#2. The blastall executable allows you to give a nucleotide or protein
sequence to the program. It is compared against databases and a summary of
matches is returned to the user.
.
Note that databases are not included in Debian; they must be retrieved
manually.
drwxr-xr-x root/root 0 2013-10-13 04:39 ./
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/bin/
-rwxr-xr-x root/root 21732 2013-10-13 04:38 ./usr/bin/bl2seq
-rwxr-xr-x root/root 29564 2013-10-13 04:38 ./usr/bin/blast2
-rwxr-xr-x root/root 49364 2013-10-13 04:38 ./usr/bin/blastall
-rwxr-xr-x root/root 40924 2013-10-13 04:38 ./usr/bin/blastall_old
-rwxr-xr-x root/root 38132 2013-10-13 04:38 ./usr/bin/blastcl3
-rwxr-xr-x root/root 29340 2013-10-13 04:38 ./usr/bin/blastclust
-rwxr-xr-x root/root 41060 2013-10-13 04:38 ./usr/bin/blastpgp
-rwxr-xr-x root/root 12036 2013-10-13 04:38 ./usr/bin/copymat
-rwxr-xr-x root/root 6748 2013-10-13 04:38 ./usr/bin/fastacmd
-rwxr-xr-x root/root 20364 2013-10-13 04:38 ./usr/bin/formatdb
-rwxr-xr-x root/root 19996 2013-10-13 04:38 ./usr/bin/formatrpsdb
-rwxr-xr-x root/root 27564 2013-10-13 04:38 ./usr/bin/impala
-rwxr-xr-x root/root 12308 2013-10-13 04:38 ./usr/bin/makemat
-rwxr-xr-x root/root 45148 2013-10-13 04:38 ./usr/bin/megablast
-rwxr-xr-x root/root 23564 2013-10-13 04:38 ./usr/bin/rpsblast
-rwxr-xr-x root/root 23900 2013-10-13 04:38 ./usr/bin/seedtop
-rwxr-xr-x root/root 5284 2013-10-13 04:38 ./usr/bin/taxblast
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/blast2/
-rw-r--r-- root/root 1829 2004-05-17 15:07 ./usr/share/doc/blast2/bl2seq.html
-rw-r--r-- root/root 12158 2010-03-26 14:52 ./usr/share/doc/blast2/blast.html
-rw-r--r-- root/root 4898 2009-08-11 14:43 ./usr/share/doc/blast2/blastall.html
-rw-r--r-- root/root 8338 2005-08-24 15:20 ./usr/share/doc/blast2/blastclust.html
-rw-r--r-- root/root 16243 2008-10-02 16:01 ./usr/share/doc/blast2/blastdb.html
-rw-r--r-- root/root 25538 2006-03-02 15:40 ./usr/share/doc/blast2/blastftp.html
-rw-r--r-- root/root 23272 2004-07-19 17:20 ./usr/share/doc/blast2/blastpgp.html
-rw-r--r-- root/root 5664 2007-01-04 17:27 ./usr/share/doc/blast2/fastacmd.html
-rw-r--r-- root/root 2379 2004-05-17 15:07 ./usr/share/doc/blast2/filter.html
-rw-r--r-- root/root 30660 2006-08-14 14:39 ./usr/share/doc/blast2/formatdb.html
-rw-r--r-- root/root 9267 2004-10-12 15:33 ./usr/share/doc/blast2/formatrpsdb.html
-rw-r--r-- root/root 30073 2004-10-26 14:04 ./usr/share/doc/blast2/history.html
-rw-r--r-- root/root 7065 2004-05-17 15:07 ./usr/share/doc/blast2/impala.html
-rw-r--r-- root/root 4065 2005-09-07 14:02 ./usr/share/doc/blast2/index.html
-rw-r--r-- root/root 11256 2004-07-02 14:41 ./usr/share/doc/blast2/megablast.html
-rw-r--r-- root/root 53064 2006-03-02 15:40 ./usr/share/doc/blast2/netblast.html
-rw-r--r-- root/root 9739 2004-05-17 15:07 ./usr/share/doc/blast2/rpsblast.html
-rw-r--r-- root/root 28065 2006-03-02 15:40 ./usr/share/doc/blast2/seedtop.html
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/blast2/copyright
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/blast2/examples/
-rw-r--r-- root/root 1885 2009-01-12 18:48 ./usr/share/doc/blast2/examples/web_blast.pl.gz
-rw-r--r-- root/root 309857 2006-04-07 13:58 ./usr/share/doc/blast2/scoring.pdf.gz
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/blast2/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/blast2/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc-base/
-rw-r--r-- root/root 616 2013-10-13 02:49 ./usr/share/doc-base/blast2
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/man1/
-rw-r--r-- root/root 1109 2013-10-13 04:37 ./usr/share/man/man1/blastclust.1.gz
-rw-r--r-- root/root 549 2013-10-13 04:37 ./usr/share/man/man1/copymat.1.gz
-rw-r--r-- root/root 1152 2013-10-13 04:37 ./usr/share/man/man1/fastacmd.1.gz
-rw-r--r-- root/root 1614 2013-10-13 04:37 ./usr/share/man/man1/formatdb.1.gz
-rw-r--r-- root/root 1262 2013-10-13 04:37 ./usr/share/man/man1/formatrpsdb.1.gz
-rw-r--r-- root/root 649 2013-10-13 04:37 ./usr/share/man/man1/makemat.1.gz
-rw-r--r-- root/root 429 2013-10-13 04:37 ./usr/share/man/man1/taxblast.1.gz
-rw-r--r-- root/root 6954 2013-10-13 04:37 ./usr/share/man/man1/blast.1.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/menu/
-rw-r--r-- root/root 3147 2013-10-13 04:37 ./usr/share/menu/blast2
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 57 2013-10-13 02:49 ./usr/share/lintian/overrides/blast2
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/blast2/README.gz -> changelog.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/blastcl3.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/blastall_old.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/megablast.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/rpsblast.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/blastall.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/bl2seq.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/blastpgp.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/impala.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/seedtop.1.gz -> blast.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/blast2.1.gz -> blast.1.gz
libncbi6_6.1.20120620-7_armhf.deb
─────────────────────────────────
new debian package, version 2.0.
size 4238432 bytes: control archive=72879 bytes.
655 bytes, 16 lines control
2203 bytes, 27 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
334 bytes, 15 lines shlibs
424797 bytes, 11219 lines symbols
Package: libncbi6
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 9572
Pre-Depends: multiarch-support
Depends: ncbi-data (= 6.1.20120620-7), libc6 (>= 2.7)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for biology applications
The NCBI Software Development Toolkit was developed for the production and
distribution of GenBank, Entrez, BLAST, and related services by NCBI. It
allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc.
drwxr-xr-x root/root 0 2013-10-13 04:38 ./
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/lib/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 548268 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblast.so.6.1.20120620
-rw-r--r-- root/root 98956 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastapi.so.6.1.20120620
-rw-r--r-- root/root 68876 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastcompadj.so.6.1.20120620
-rw-r--r-- root/root 132772 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiNacc.so.6.1.20120620
-rw-r--r-- root/root 568004 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbi.so.6.1.20120620
-rw-r--r-- root/root 102016 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicdr.so.6.1.20120620
-rw-r--r-- root/root 29764 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiid1.so.6.1.20120620
-rw-r--r-- root/root 46996 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimla.so.6.1.20120620
-rw-r--r-- root/root 559428 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimmdb.so.6.1.20120620
-rw-r--r-- root/root 5427596 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiobj.so.6.1.20120620
-rw-r--r-- root/root 1344460 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitool.so.6.1.20120620
-rw-r--r-- root/root 88976 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitxc2.so.6.1.20120620
-rw-r--r-- root/root 82156 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetblast.so.6.1.20120620
-rw-r--r-- root/root 16056 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetcli.so.6.1.20120620
-rw-r--r-- root/root 122524 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibgif.so.6.1.20120620
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6/
-rw-r--r-- root/root 59597 2008-06-16 15:51 ./usr/share/doc/libncbi6/README.htm
-rw-r--r-- root/root 22838 2011-09-06 22:30 ./usr/share/doc/libncbi6/dispatcher.html
-rw-r--r-- root/root 94 2013-10-13 02:49 ./usr/share/doc/libncbi6/TODO.Debian
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libncbi6/copyright
-rw-r--r-- root/root 392 2013-10-13 04:36 ./usr/share/doc/libncbi6/README.net-cfg
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6/examples/
-rwxr-xr-x root/root 3782 2013-10-13 02:49 ./usr/share/doc/libncbi6/examples/fwd_check.sh
-rw-r--r-- root/root 4354 2009-10-26 15:01 ./usr/share/doc/libncbi6/FAQ.txt.gz
-rw-r--r-- root/root 5529 2001-12-12 20:36 ./usr/share/doc/libncbi6/ncbixml.txt.gz
-rw-r--r-- root/root 5135 2013-10-13 04:36 ./usr/share/doc/libncbi6/README.config.gz
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libncbi6/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libncbi6/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc-base/
-rw-r--r-- root/root 580 2013-10-13 02:49 ./usr/share/doc-base/ncbi-tools-dispatcher
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblast.so.6 -> libblast.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastapi.so.6 -> libblastapi.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastcompadj.so.6 -> libblastcompadj.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiCacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiNacc.so.6 -> libncbiNacc.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbi.so.6 -> libncbi.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicdr.so.6 -> libncbicdr.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiid1.so.6 -> libncbiid1.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimla.so.6 -> libncbimla.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimmdb.so.6 -> libncbimmdb.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiobj.so.6 -> libncbiobj.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitool.so.6 -> libncbitool.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitxc2.so.6 -> libncbitxc2.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetblast.so.6 -> libnetblast.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetcli.so.6 -> libnetcli.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetentr.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibgif.so.6 -> libvibgif.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6/README.gz -> changelog.gz
libncbi6-dev_6.1.20120620-7_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 6073554 bytes: control archive=14010 bytes.
585 bytes, 16 lines control
33875 bytes, 503 lines md5sums
Package: libncbi6-dev
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 16803
Depends: libncbi6 (= 6.1.20120620-7)
Recommends: ncbi-tools-bin
Provides: ncbi-tools-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for biology applications (development files)
This package supplies development versions of NCBI's non-graphical C
libraries, along with the corresponding header files.
drwxr-xr-x root/root 0 2013-10-13 04:38 ./
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/include/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/include/ncbi/
-rw-r--r-- root/root 6100 2001-05-25 01:42 ./usr/include/ncbi/PubStructAsn.h
-rw-r--r-- root/root 2122 2000-01-18 19:42 ./usr/include/ncbi/a2ferr.h
-rw-r--r-- root/root 894 1997-08-25 18:04 ./usr/include/ncbi/a2ferrdf.h
-rw-r--r-- root/root 7162 1997-08-25 18:04 ./usr/include/ncbi/a2fstruc.h
-rw-r--r-- root/root 17078 2000-01-12 20:17 ./usr/include/ncbi/accentr.h
-rw-r--r-- root/root 1560 1999-03-16 22:47 ./usr/include/ncbi/accid1.h
-rw-r--r-- root/root 6923 1999-04-01 13:56 ./usr/include/ncbi/accutils.h
-rw-r--r-- root/root 3913 2008-12-02 16:16 ./usr/include/ncbi/acerdapi.h
-rw-r--r-- root/root 11450 2010-08-30 12:39 ./usr/include/ncbi/aceread.h
-rw-r--r-- root/root 9154 2008-05-02 18:02 ./usr/include/ncbi/actutils.h
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/algo/
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/algo/blast/
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/algo/blast/core/
-rw-r--r-- root/root 4512 2007-03-01 22:25 ./usr/include/ncbi/algo/blast/core/aa_ungapped.h
-rw-r--r-- root/root 18882 2011-10-21 13:29 ./usr/include/ncbi/algo/blast/core/blast_aalookup.h
-rw-r--r-- root/root 3097 2010-07-23 14:36 ./usr/include/ncbi/algo/blast/core/blast_aascan.h
-rw-r--r-- root/root 15533 2012-06-06 16:04 ./usr/include/ncbi/algo/blast/core/blast_def.h
-rw-r--r-- root/root 5405 2011-06-13 18:24 ./usr/include/ncbi/algo/blast/core/blast_diagnostics.h
-rw-r--r-- root/root 7534 2007-03-20 14:55 ./usr/include/ncbi/algo/blast/core/blast_dynarray.h
-rw-r--r-- root/root 4102 2008-01-24 21:25 ./usr/include/ncbi/algo/blast/core/blast_encoding.h
-rw-r--r-- root/root 11076 2010-12-02 16:14 ./usr/include/ncbi/algo/blast/core/blast_engine.h
-rw-r--r-- root/root 1987 2004-08-10 16:40 ./usr/include/ncbi/algo/blast/core/blast_export.h
-rw-r--r-- root/root 9962 2012-05-16 17:09 ./usr/include/ncbi/algo/blast/core/blast_extend.h
-rw-r--r-- root/root 14025 2010-05-12 12:54 ./usr/include/ncbi/algo/blast/core/blast_filter.h
-rw-r--r-- root/root 11978 2010-09-13 12:49 ./usr/include/ncbi/algo/blast/core/blast_gapalign.h
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-rw-r--r-- root/root 4066 2008-07-23 16:55 ./usr/include/ncbi/algo/blast/core/blast_kappa.h
-rw-r--r-- root/root 5050 2006-11-21 16:42 ./usr/include/ncbi/algo/blast/core/blast_lookup.h
-rw-r--r-- root/root 6356 2010-03-23 16:04 ./usr/include/ncbi/algo/blast/core/blast_message.h
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-rw-r--r-- root/root 15972 2011-12-14 20:11 ./usr/include/ncbi/algo/blast/core/blast_psi.h
-rw-r--r-- root/root 31911 2011-12-16 13:19 ./usr/include/ncbi/algo/blast/core/blast_psi_priv.h
-rw-r--r-- root/root 8828 2011-11-30 13:59 ./usr/include/ncbi/algo/blast/core/blast_query_info.h
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-rw-r--r-- root/root 2993 2007-11-28 15:55 ./usr/include/ncbi/algo/blast/core/blast_seg.h
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-rw-r--r-- root/root 11338 2007-12-20 22:55 ./usr/include/ncbi/algo/blast/core/blast_setup.h
-rw-r--r-- root/root 37317 2012-02-01 14:39 ./usr/include/ncbi/algo/blast/core/blast_stat.h
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-rw-r--r-- root/root 165 2005-03-01 16:57 ./usr/include/ncbi/algo/blast/core/blast_toolkit.h
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-rw-r--r-- root/root 4634 2007-03-30 14:56 ./usr/include/ncbi/algo/blast/core/index_ungapped.h
-rw-r--r-- root/root 2537 2009-01-07 16:29 ./usr/include/ncbi/algo/blast/core/link_hsps.h
-rw-r--r-- root/root 3102 2008-11-04 19:59 ./usr/include/ncbi/algo/blast/core/lookup_util.h
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-rw-r--r-- root/root 10616 2008-04-15 15:55 ./usr/include/ncbi/algo/blast/core/pattern.h
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-rw-r--r-- root/root 3174 2006-11-21 16:51 ./usr/include/ncbi/algo/blast/core/phi_extend.h
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-rw-r--r-- root/root 10225 2010-10-29 12:34 ./usr/include/ncbi/algo/blast/core/split_query.h
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/algo/blast/composition_adjustment/
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-rw-r--r-- root/root 3766 2012-06-20 13:46 ./usr/include/ncbi/sugmap.h
-rw-r--r-- root/root 85 1997-08-25 18:40 ./usr/include/ncbi/sugprefx.h
-rw-r--r-- root/root 224 1998-02-10 17:51 ./usr/include/ncbi/tax1map.h
-rw-r--r-- root/root 6251 2012-06-12 20:18 ./usr/include/ncbi/tax3api.h
-rw-r--r-- root/root 3115 2002-10-07 19:52 ./usr/include/ncbi/taxblast.h
-rw-r--r-- root/root 4084 2005-08-08 18:03 ./usr/include/ncbi/taxext.h
-rw-r--r-- root/root 6327 2003-01-07 21:22 ./usr/include/ncbi/taxinc.h
-rw-r--r-- root/root 10906 2012-06-20 13:46 ./usr/include/ncbi/taxon1.h
-rw-r--r-- root/root 216 1997-08-25 18:41 ./usr/include/ncbi/taxuerr.h
-rw-r--r-- root/root 3156 2000-01-12 19:14 ./usr/include/ncbi/taxutil.h
-rw-r--r-- root/root 904 1997-12-08 22:55 ./usr/include/ncbi/terr.h
-rw-r--r-- root/root 2316 2007-10-10 16:10 ./usr/include/ncbi/tfuns.h
-rw-r--r-- root/root 14697 2001-04-25 15:43 ./usr/include/ncbi/thrdatd.h
-rw-r--r-- root/root 6641 2001-04-26 17:23 ./usr/include/ncbi/thrddecl.h
-rw-r--r-- root/root 9090 2011-05-09 20:02 ./usr/include/ncbi/toasn3.h
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-rw-r--r-- root/root 7480 2003-09-28 20:22 ./usr/include/ncbi/tomedlin.h
-rw-r--r-- root/root 4065 2011-09-30 21:13 ./usr/include/ncbi/toporg.h
-rw-r--r-- root/root 5058 1999-05-18 21:13 ./usr/include/ncbi/tree.h
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-rw-r--r-- root/root 2974 1997-08-25 18:17 ./usr/include/ncbi/tsprintf.h
-rw-r--r-- root/root 28375 2006-07-13 17:06 ./usr/include/ncbi/txalign.h
-rw-r--r-- root/root 6368 2005-08-08 18:03 ./usr/include/ncbi/txclient.h
-rw-r--r-- root/root 7498 2005-08-08 18:03 ./usr/include/ncbi/txcommon.h
-rw-r--r-- root/root 2439 2000-03-06 17:58 ./usr/include/ncbi/undefwin.h
-rw-r--r-- root/root 3150 1998-09-16 17:46 ./usr/include/ncbi/urkbias.h
-rw-r--r-- root/root 3640 1998-10-13 17:16 ./usr/include/ncbi/urkcnsrt.h
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-rw-r--r-- root/root 2603 1998-11-24 15:40 ./usr/include/ncbi/urksigu.h
-rw-r--r-- root/root 6014 1998-09-16 17:46 ./usr/include/ncbi/urktree.h
-rw-r--r-- root/root 2210 1999-01-27 15:08 ./usr/include/ncbi/urkutil.h
-rw-r--r-- root/root 7136 2011-12-30 16:26 ./usr/include/ncbi/urlquery.h
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/util/
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/util/tables/
-rw-r--r-- root/root 3469 2008-08-22 14:55 ./usr/include/ncbi/util/tables/raw_scoremat.h
-rw-r--r-- root/root 2094 2003-08-21 19:50 ./usr/include/ncbi/util/tables/tables_export.h
drwxr-xr-x root/root 0 2013-10-13 02:50 ./usr/include/ncbi/util/creaders/
-rw-r--r-- root/root 8460 2012-03-30 13:44 ./usr/include/ncbi/util/creaders/alnread.h
-rw-r--r-- root/root 2109 2004-02-03 16:47 ./usr/include/ncbi/util/creaders/creaders_export.h
-rw-r--r-- root/root 2358 2006-01-31 22:31 ./usr/include/ncbi/utilpars.h
-rw-r--r-- root/root 2637 2011-03-28 14:51 ./usr/include/ncbi/utilpub.h
-rw-r--r-- root/root 2855 2012-06-06 14:40 ./usr/include/ncbi/valapi.h
-rw-r--r-- root/root 13187 2012-06-01 20:49 ./usr/include/ncbi/valid.h
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-rw-r--r-- root/root 2239 1998-03-16 18:00 ./usr/include/ncbi/vast2cn3d.h
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-rw-r--r-- root/root 2141 1998-03-12 17:09 ./usr/include/ncbi/vast2pdb.h
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-rw-r--r-- root/root 3148 2001-02-21 22:07 ./usr/include/ncbi/vecscnapi.h
-rw-r--r-- root/root 8016 2000-07-08 20:44 ./usr/include/ncbi/vecscrn.h
-rw-r--r-- root/root 13797 2006-07-13 17:06 ./usr/include/ncbi/viewmgr.h
-rw-r--r-- root/root 6930 2004-04-29 19:55 ./usr/include/ncbi/xmlblast.h
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/lib/
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-rw-r--r-- root/root 32146 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbiacc.a
-rw-r--r-- root/root 35754 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbiCacc.a
-rw-r--r-- root/root 33710 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbiNacc.a
-rw-r--r-- root/root 749444 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbi.a
-rw-r--r-- root/root 116866 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbicdr.a
-rw-r--r-- root/root 31674 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbiid1.a
-rw-r--r-- root/root 50482 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbimla.a
-rw-r--r-- root/root 662510 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbimmdb.a
-rw-r--r-- root/root 6639592 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbiobj.a
-rw-r--r-- root/root 1625194 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbitool.a
-rw-r--r-- root/root 104008 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libncbitxc2.a
-rw-r--r-- root/root 85790 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libnetblast.a
-rw-r--r-- root/root 19284 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libnetcli.a
-rw-r--r-- root/root 124816 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libnetentr.a
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6-dev/
-rw-r--r-- root/root 1313 2006-08-28 23:12 ./usr/share/doc/libncbi6-dev/README.sdk
-rw-r--r-- root/root 178 2013-10-13 02:49 ./usr/share/doc/libncbi6-dev/README.Debian
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libncbi6-dev/copyright
-rw-r--r-- root/root 2512 2004-10-05 20:15 ./usr/share/doc/libncbi6-dev/access.txt.gz
-rw-r--r-- root/root 10029 2012-05-14 19:23 ./usr/share/doc/libncbi6-dev/asn2gb.txt.gz
-rw-r--r-- root/root 4598 2003-02-28 16:22 ./usr/share/doc/libncbi6-dev/asn2gph.txt.gz
-rw-r--r-- root/root 367300 2009-02-23 19:30 ./usr/share/doc/libncbi6-dev/sdk.doc.gz
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libncbi6-dev/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libncbi6-dev/changelog.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblast.so -> libblast.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastapi.so -> libblastapi.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libblastcompadj.so -> libblastcompadj.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiacc.so -> libncbiNacc.so
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiCacc.so -> libncbiNacc.so
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiNacc.so -> libncbiNacc.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbi.so -> libncbi.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicdr.so -> libncbicdr.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiid1.so -> libncbiid1.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimla.so -> libncbimla.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbimmdb.so -> libncbimmdb.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbiobj.so -> libncbiobj.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitool.so -> libncbitool.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbitxc2.so -> libncbitxc2.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetblast.so -> libnetblast.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetcli.so -> libnetcli.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libnetentr.so -> libncbiNacc.so
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6-dev/README.gz -> changelog.gz
libncbi6-dbg_6.1.20120620-7_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 7564818 bytes: control archive=1526 bytes.
774 bytes, 20 lines control
1816 bytes, 18 lines md5sums
Package: libncbi6-dbg
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8076
Depends: libncbi6 (= 6.1.20120620-7)
Recommends: gdb
Section: debug
Priority: extra
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for biology applications (debugging symbols)
This package is useful to provide a backtrace with symbol names in a
debugger; this facilitates interpretation of core dumps, and aids in finding
logic errors in programs using the libraries in this package (or the
libraries themselves).
.
Non-programmers will likely have little use for this package. See the
libncbi6 package for more information.
drwxr-xr-x root/root 0 2013-10-13 04:38 ./
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6-dbg/
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libncbi6-dbg/copyright
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libncbi6-dbg/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libncbi6-dbg/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/46/
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drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/22/
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drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/7d/
-rw-r--r-- root/root 114768 2013-10-13 04:37 ./usr/lib/debug/.build-id/7d/1def04a18656f2f4569963a7e3b566ece2052a.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/b2/
-rw-r--r-- root/root 35319 2013-10-13 04:37 ./usr/lib/debug/.build-id/b2/212832cefcb3ba3bc9272e8be990ab8b1e80ee.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 50761 2013-10-13 04:37 ./usr/lib/debug/.build-id/db/84834c06b496f714d22b3f5821c43ca4b1bded.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root 471009 2013-10-13 04:37 ./usr/lib/debug/.build-id/3d/a19e75b493a44b6e422fea0109a9a7bf19db5e.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 4336709 2013-10-13 04:37 ./usr/lib/debug/.build-id/ff/91d8e3155e5eea7c0ec94927833dce3f57022e.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/f7/
-rw-r--r-- root/root 1402805 2013-10-13 04:37 ./usr/lib/debug/.build-id/f7/7c785fbf0e10c3ef023cb55c52ed53227dd878.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/7b/
-rw-r--r-- root/root 102359 2013-10-13 04:37 ./usr/lib/debug/.build-id/7b/860eb69b7132cadda5cd6a611466eddea45a37.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/e6/
-rw-r--r-- root/root 74814 2013-10-13 04:37 ./usr/lib/debug/.build-id/e6/a233ea44585808d35c7f8c03115e3fdf5fd16f.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/b9/
-rw-r--r-- root/root 25240 2013-10-13 04:37 ./usr/lib/debug/.build-id/b9/eb51edc6f3e7537b7be98f4c35db8d6e62a937.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root 83589 2013-10-13 04:37 ./usr/lib/debug/.build-id/16/bd02ad5b754cdeaffbaf83f3915411faaeb764.debug
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libncbi6-dbg/README.gz -> changelog.gz
ncbi-tools-bin_6.1.20120620-7_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 549330 bytes: control archive=3287 bytes.
925 bytes, 20 lines control
5285 bytes, 85 lines md5sums
185 bytes, 7 lines * postinst #!/bin/sh
160 bytes, 5 lines * postrm #!/bin/sh
Package: ncbi-tools-bin
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1223
Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.7)
Suggests: blast2, libvibrant6b, ncbi-tools-x11
Breaks: libncbi6-dev (<< 6.1.20110713-3~)
Replaces: libncbi6-dev (<< 6.1.20110713-3~)
Section: science
Priority: optional
Multi-Arch: foreign
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for biology applications (text-based utilities)
This package includes various utilities distributed with the NCBI C SDK,
including the development tools asntool and errhdr (formerly of
libncbi6-dev). None of the programs in this package require X; you can
find the X-based utilities in the ncbi-tools-x11 package. BLAST and
related tools are in a separate package (blast2).
drwxr-xr-x root/root 0 2013-10-13 04:38 ./
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drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/bin/
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-rwxr-xr-x root/root 6172 2013-10-13 04:38 ./usr/bin/asn2asn
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-rwxr-xr-x root/root 7108 2013-10-13 04:38 ./usr/bin/asn2idx
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-rwxr-xr-x root/root 42236 2013-10-13 04:38 ./usr/bin/asnval
-rwxr-xr-x root/root 4868 2013-10-13 04:38 ./usr/bin/checksub
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-rwxr-xr-x root/root 5852 2013-10-13 04:38 ./usr/bin/errhdr
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-rwxr-xr-x root/root 5476 2013-10-13 04:38 ./usr/bin/findspl
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-rwxr-xr-x root/root 11644 2013-10-13 04:38 ./usr/bin/gene2xml
-rwxr-xr-x root/root 24956 2013-10-13 04:38 ./usr/bin/getmesh
-rwxr-xr-x root/root 25300 2013-10-13 04:38 ./usr/bin/getpub
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-rwxr-xr-x root/root 221084 2013-10-13 04:38 ./usr/bin/makeset
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-rwxr-xr-x root/root 104868 2013-10-13 04:38 ./usr/bin/tbl2asn
-rwxr-xr-x root/root 11212 2013-10-13 04:38 ./usr/bin/trna2sap
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-rwxr-xr-x root/root 10260 2013-10-13 04:38 ./usr/bin/vecscreen
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/ncbi-tools-bin/
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-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/ncbi-tools-bin/copyright
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/ncbi-tools-bin/examples/
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-rw-r--r-- root/root 3049 2012-06-14 19:23 ./usr/share/doc/ncbi-tools-bin/examples/tblfix.pl.gz
-rw-r--r-- root/root 3757 2010-03-19 19:46 ./usr/share/doc/ncbi-tools-bin/gene2xml.txt.gz
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-rw-r--r-- root/root 5839 2013-10-13 04:36 ./usr/share/doc/ncbi-tools-bin/README.fa2htgs.gz
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/ncbi-tools-bin/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/ncbi-tools-bin/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/man1/
-rw-r--r-- root/root 1803 2013-10-13 04:37 ./usr/share/man/man1/asn2all.1.gz
-rw-r--r-- root/root 505 2013-10-13 04:37 ./usr/share/man/man1/asn2asn.1.gz
-rw-r--r-- root/root 1167 2013-10-13 04:37 ./usr/share/man/man1/asn2ff.1.gz
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-rw-r--r-- root/root 568 2013-10-13 04:37 ./usr/share/man/man1/asnmacro.1.gz
-rw-r--r-- root/root 1132 2013-10-13 04:37 ./usr/share/man/man1/asntool.1.gz
-rw-r--r-- root/root 1330 2013-10-13 04:37 ./usr/share/man/man1/asnval.1.gz
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-rw-r--r-- root/root 2159 2013-10-13 04:37 ./usr/share/man/man1/cleanasn.1.gz
-rw-r--r-- root/root 485 2013-10-13 04:37 ./usr/share/man/man1/debruijn.1.gz
-rw-r--r-- root/root 661 2013-10-13 04:37 ./usr/share/man/man1/errhdr.1.gz
-rw-r--r-- root/root 3498 2013-10-13 04:37 ./usr/share/man/man1/fa2htgs.1.gz
-rw-r--r-- root/root 361 2013-10-13 04:37 ./usr/share/man/man1/findspl.1.gz
-rw-r--r-- root/root 715 2013-10-13 04:37 ./usr/share/man/man1/gbseqget.1.gz
-rw-r--r-- root/root 911 2013-10-13 04:37 ./usr/share/man/man1/gene2xml.1.gz
-rw-r--r-- root/root 382 2013-10-13 04:37 ./usr/share/man/man1/getmesh.1.gz
-rw-r--r-- root/root 509 2013-10-13 04:37 ./usr/share/man/man1/getpub.1.gz
-rw-r--r-- root/root 382 2013-10-13 04:37 ./usr/share/man/man1/gil2bin.1.gz
-rw-r--r-- root/root 1294 2013-10-13 04:37 ./usr/share/man/man1/idfetch.1.gz
-rw-r--r-- root/root 410 2013-10-13 04:37 ./usr/share/man/man1/indexpub.1.gz
-rw-r--r-- root/root 651 2013-10-13 04:37 ./usr/share/man/man1/insdseqget.1.gz
-rw-r--r-- root/root 462 2013-10-13 04:37 ./usr/share/man/man1/makeset.1.gz
-rw-r--r-- root/root 752 2013-10-13 04:37 ./usr/share/man/man1/nps2gps.1.gz
-rw-r--r-- root/root 492 2013-10-13 04:37 ./usr/share/man/man1/sortbyquote.1.gz
-rw-r--r-- root/root 3967 2013-10-13 04:37 ./usr/share/man/man1/spidey.1.gz
-rw-r--r-- root/root 411 2013-10-13 04:37 ./usr/share/man/man1/subfuse.1.gz
-rw-r--r-- root/root 2277 2013-10-13 04:37 ./usr/share/man/man1/tbl2asn.1.gz
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-rw-r--r-- root/root 1026 2013-10-13 04:37 ./usr/share/man/man1/vecscreen.1.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/menu/
-rw-r--r-- root/root 6710 2013-10-13 04:37 ./usr/share/menu/ncbi-tools-bin
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 129 2013-10-13 02:49 ./usr/share/lintian/overrides/ncbi-tools-bin
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/ncbi-tools-bin/README.gz -> changelog.gz
ncbi-tools-x11_6.1.20120620-7_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 1163664 bytes: control archive=2569 bytes.
788 bytes, 17 lines control
4060 bytes, 55 lines md5sums
362 bytes, 13 lines * postinst #!/bin/sh
160 bytes, 5 lines * postrm #!/bin/sh
68 bytes, 5 lines * prerm #!/bin/sh
Package: ncbi-tools-x11
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2137
Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libvibrant6b (<< 6.1.20120620.1), libvibrant6b (>= 6.1.20120620), libc6 (>= 2.4)
Suggests: blast2, ncbi-tools-bin
Section: science
Priority: optional
Multi-Arch: foreign
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for biology applications (X-based utilities)
This package includes some X-based utilities distributed with the
NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These
programs are not part of ncbi-tools-bin because they depend on
several additional library packages.
drwxr-xr-x root/root 0 2013-10-13 04:39 ./
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/bin/
-rwxr-xr-x root/root 8164 2013-10-13 04:38 ./usr/bin/Cn3D-3.0
-rwxr-xr-x root/root 1707808 2013-10-13 04:38 ./usr/bin/Psequin
-rwxr-xr-x root/root 8564 2013-10-13 04:38 ./usr/bin/ddv
-rwxr-xr-x root/root 22544 2013-10-13 04:38 ./usr/bin/entrez2
-rwxr-xr-x root/root 30828 2013-10-13 04:38 ./usr/bin/sbtedit
-rwxr-xr-x root/root 8660 2013-10-13 04:38 ./usr/bin/udv
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/ncbi-tools-x11/
-rw-r--r-- root/root 3658 1999-11-01 22:01 ./usr/share/doc/ncbi-tools-x11/firedialog.gif
-rw-r--r-- root/root 8922 2013-10-13 02:49 ./usr/share/doc/ncbi-tools-x11/firewall.html
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/ncbi-tools-x11/images/
-rw-r--r-- root/root 6736 2005-10-27 18:33 ./usr/share/doc/ncbi-tools-x11/images/affil.png
-rw-r--r-- root/root 7264 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/annot.png
-rw-r--r-- root/root 7926 2005-10-27 18:33 ./usr/share/doc/ncbi-tools-x11/images/authors.png
-rw-r--r-- root/root 11612 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/cds_edit.png
-rw-r--r-- root/root 6311 2005-10-27 18:33 ./usr/share/doc/ncbi-tools-x11/images/contact.png
-rw-r--r-- root/root 16275 2005-10-27 17:13 ./usr/share/doc/ncbi-tools-x11/images/desktop.png
-rw-r--r-- root/root 6762 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/format.png
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-rw-r--r-- root/root 7651 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/graphic.png
-rw-r--r-- root/root 8587 2007-07-26 14:33 ./usr/share/doc/ncbi-tools-x11/images/loc_page.png
-rw-r--r-- root/root 2050 2005-11-18 15:23 ./usr/share/doc/ncbi-tools-x11/images/logo.png
-rw-r--r-- root/root 2142 2009-06-19 19:50 ./usr/share/doc/ncbi-tools-x11/images/ncbi_sequin.css
-rw-r--r-- root/root 4891 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/net_cfg.png
-rw-r--r-- root/root 9717 2012-05-15 15:32 ./usr/share/doc/ncbi-tools-x11/images/nucaln.png
-rw-r--r-- root/root 10779 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/nucset.png
-rw-r--r-- root/root 10516 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/nucsing1.png
-rw-r--r-- root/root 11381 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/nucsing2.png
-rw-r--r-- root/root 10958 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/organism.png
-rw-r--r-- root/root 12444 2012-05-15 19:22 ./usr/share/doc/ncbi-tools-x11/images/props_pg.png
-rw-r--r-- root/root 10712 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/protein1.png
-rw-r--r-- root/root 11731 2005-10-27 17:13 ./usr/share/doc/ncbi-tools-x11/images/protein2.png
-rw-r--r-- root/root 17497 2005-10-27 17:13 ./usr/share/doc/ncbi-tools-x11/images/sequence.png
-rw-r--r-- root/root 7501 2005-10-27 19:24 ./usr/share/doc/ncbi-tools-x11/images/submit.png
-rw-r--r-- root/root 15403 2005-10-27 13:41 ./usr/share/doc/ncbi-tools-x11/images/update.png
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-rw-r--r-- root/root 70153 2009-06-19 19:49 ./usr/share/doc/ncbi-tools-x11/sequin.htm
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-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/ncbi-tools-x11/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc-base/
-rw-r--r-- root/root 547 2013-10-13 02:49 ./usr/share/doc-base/sequin
-rw-r--r-- root/root 470 2013-10-13 02:49 ./usr/share/doc-base/ncbi-tools-firewall
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/man/man1/
-rw-r--r-- root/root 522 2013-10-13 04:37 ./usr/share/man/man1/Cn3D-3.0.1.gz
-rw-r--r-- root/root 398 2013-10-13 04:37 ./usr/share/man/man1/ddv.1.gz
-rw-r--r-- root/root 412 2013-10-13 04:37 ./usr/share/man/man1/entrez2.1.gz
-rw-r--r-- root/root 1291 2013-10-13 04:37 ./usr/share/man/man1/Psequin.1.gz
-rw-r--r-- root/root 315 2013-10-13 04:37 ./usr/share/man/man1/sbtedit.1.gz
-rw-r--r-- root/root 289 2013-10-13 04:37 ./usr/share/man/man1/udv.1.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/applications/
-rw-r--r-- root/root 204 2013-10-13 04:37 ./usr/share/applications/Cn3D-3.0.desktop
-rw-r--r-- root/root 258 2013-10-13 04:37 ./usr/share/applications/Psequin.desktop
-rw-r--r-- root/root 232 2013-10-13 04:37 ./usr/share/applications/ddv.desktop
-rw-r--r-- root/root 237 2013-10-13 04:37 ./usr/share/applications/entrez2.desktop
-rw-r--r-- root/root 212 2013-10-13 04:37 ./usr/share/applications/udv.desktop
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/menu/
-rw-r--r-- root/root 951 2013-10-13 04:37 ./usr/share/menu/ncbi-tools-x11
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 65 2013-10-13 02:49 ./usr/share/lintian/overrides/ncbi-tools-x11
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/
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drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/mime/packages/
-rw-r--r-- root/root 158 2013-10-13 02:49 ./usr/lib/mime/packages/ncbi-tools-x11
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/bin/sequin -> Psequin
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/bin/entrez -> entrez2
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/ncbi-tools-x11/README.gz -> changelog.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/sequin.1.gz -> Psequin.1.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/man/man1/entrez.1.gz -> entrez2.1.gz
libvibrant6b_6.1.20120620-7_armhf.deb
─────────────────────────────────────
new debian package, version 2.0.
size 1381842 bytes: control archive=17474 bytes.
850 bytes, 18 lines control
752 bytes, 9 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
136 bytes, 5 lines shlibs
90901 bytes, 2449 lines symbols
Package: libvibrant6b
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2712
Pre-Depends: multiarch-support
Depends: libncbi6 (<< 6.1.20120620.1), libncbi6 (>= 6.1.20120620), libc6 (>= 2.4), libgl1-mesa-glx | libgl1, libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libx11-6, libxm4 (>= 2.3.4), libxmu6, libxt6
Conflicts: libvibrant6, libvibrant6a
Replaces: libvibrant6, libvibrant6a
Section: libs
Priority: optional
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for graphic biology applications
This is the library for those who just want to run Vibrant applications.
It also includes a wrapper (vibrate) that allows many NCBI applications to
provide a GUI for selecting options.
drwxr-xr-x root/root 0 2013-10-13 04:38 ./
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/lib/
drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 85916 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6.1.20120620
-rw-r--r-- root/root 145064 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6.1.20120620
-rw-r--r-- root/root 1795684 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so.6.1.20120620
-rw-r--r-- root/root 91204 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibnet.so.6.1.20120620
-rw-r--r-- root/root 532376 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so.6.1.20120620
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6b/
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libvibrant6b/copyright
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libvibrant6b/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libvibrant6b/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 48 2013-10-13 02:49 ./usr/share/lintian/overrides/libvibrant6b
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libddvlib.so.6 -> libddvlib.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.so.6 -> libncbicn3dOGL.so.6
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so.6 -> libncbicn3dOGL.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so.6 -> libncbidesk.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibnet.so.6 -> libvibnet.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibrant.so.6 -> libvibrantOGL.so.6
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so.6 -> libvibrantOGL.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6b/README.gz -> changelog.gz
libvibrant6-dev_6.1.20120620-7_armhf.deb
────────────────────────────────────────
new debian package, version 2.0.
size 2150708 bytes: control archive=4114 bytes.
614 bytes, 14 lines control
7633 bytes, 122 lines md5sums
337 bytes, 13 lines * postinst #!/bin/sh
Package: libvibrant6-dev
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5350
Depends: libglu1-mesa-dev | libglu-dev, libmotif-dev, libncbi6-dev (= 6.1.20120620-7), libvibrant6b (= 6.1.20120620-7), libxmu-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for graphic biology applications (development files)
Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic
biological applications.
drwxr-xr-x root/root 0 2013-10-13 04:40 ./
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/include/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/include/ncbi/
-rw-r--r-- root/root 491 1997-08-25 18:21 ./usr/include/ncbi/aacomp.h
-rw-r--r-- root/root 15032 2000-04-25 00:22 ./usr/include/ncbi/algorend.h
-rw-r--r-- root/root 4028 1997-08-25 18:21 ./usr/include/ncbi/apparam.h
-rw-r--r-- root/root 5146 2008-09-30 20:24 ./usr/include/ncbi/biosrc.h
-rw-r--r-- root/root 15659 2011-04-08 16:03 ./usr/include/ncbi/bspview.h
-rw-r--r-- root/root 6284 2010-09-21 12:54 ./usr/include/ncbi/cdrgn.h
-rw-r--r-- root/root 16040 2012-06-20 13:46 ./usr/include/ncbi/cn3d.h
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-rw-r--r-- root/root 241 1997-09-29 17:36 ./usr/include/ncbi/vibtree.h
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drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/lib/
drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 102432 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libddvlib.a
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-rw-r--r-- root/root 717198 2013-10-13 04:38 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.a
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6-dev/
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libvibrant6-dev/copyright
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libvibrant6-dev/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libvibrant6-dev/changelog.gz
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libddvlib.so -> libddvlib.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicn3d.so -> libncbicn3dOGL.so
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbicn3dOGL.so -> libncbicn3dOGL.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libncbidesk.so -> libncbidesk.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibgif.so -> libvibgif.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibnet.so -> libvibnet.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibrant.so -> libvibrantOGL.so
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/lib/arm-linux-gnueabihf/libvibrantOGL.so -> libvibrantOGL.so.6.1.20120620
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6-dev/README.gz -> changelog.gz
libvibrant6b-dbg_6.1.20120620-7_armhf.deb
─────────────────────────────────────────
new debian package, version 2.0.
size 3126768 bytes: control archive=1051 bytes.
836 bytes, 21 lines control
768 bytes, 8 lines md5sums
Package: libvibrant6b-dbg
Source: ncbi-tools6
Version: 6.1.20120620-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3384
Depends: libvibrant6b (= 6.1.20120620-7)
Recommends: gdb
Suggests: libncbi6-dbg (= 6.1.20120620-7)
Section: debug
Priority: extra
Multi-Arch: same
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Description: NCBI libraries for graphic biology applications (debugging symbols)
This package is useful to provide a backtrace with symbol names in a
debugger; this facilitates interpretation of core dumps, and aids in finding
logic errors in programs using the libraries in this package (or the
libraries themselves).
.
Non-programmers will likely have little use for this package. See the
libvibrant6b package for more information.
drwxr-xr-x root/root 0 2013-10-13 04:40 ./
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/
drwxr-xr-x root/root 0 2013-10-13 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6b-dbg/
-rw-r--r-- root/root 1623 2013-10-13 02:49 ./usr/share/doc/libvibrant6b-dbg/copyright
-rw-r--r-- root/root 14692 2013-10-13 02:49 ./usr/share/doc/libvibrant6b-dbg/changelog.Debian.gz
-rw-r--r-- root/root 18160 2008-06-16 15:51 ./usr/share/doc/libvibrant6b-dbg/changelog.gz
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 128597 2013-10-13 04:37 ./usr/lib/debug/.build-id/10/2d8b811a3ec253730a5f2a2e26f9e7bec4f70e.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root 210313 2013-10-13 04:37 ./usr/lib/debug/.build-id/3d/3bf5d9be67609121e57911f538f0ce083b0558.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/1d/
-rw-r--r-- root/root 2257692 2013-10-13 04:37 ./usr/lib/debug/.build-id/1d/d4293be90563f1a2f501f73b201bf707bd94da.debug
drwxr-xr-x root/root 0 2013-10-13 04:37 ./usr/lib/debug/.build-id/48/
-rw-r--r-- root/root 124136 2013-10-13 04:37 ./usr/lib/debug/.build-id/48/3dd26833d494b2bed88a306a55310108e53183.debug
drwxr-xr-x root/root 0 2013-10-13 04:38 ./usr/lib/debug/.build-id/e5/
-rw-r--r-- root/root 708956 2013-10-13 04:38 ./usr/lib/debug/.build-id/e5/63a16a33e86205a06c6a007fb2fa33bd0c077e.debug
lrwxrwxrwx root/root 0 2013-10-13 04:37 ./usr/share/doc/libvibrant6b-dbg/README.gz -> changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 646900
Build-Time: 6703
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 280
Job: ncbi-tools6_6.1.20120620-7
Machine Architecture: armhf
Package: ncbi-tools6
Package-Time: 7398
Source-Version: 6.1.20120620-7
Space: 646900
Status: successful
Version: 6.1.20120620-7
────────────────────────────────────────────────────────────────────────────────
Finished at 20131013-0441
Build needed 02:03:18, 646900k disc space