ncbi-blast+ →
2.7.1-1+b6 →
armhf → 2018-12-02 09:17:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| ncbi-blast+ 2.7.1-1+b6 (armhf) Sun, 02 Dec 2018 08:30:47 +0000 |
+==============================================================================+
Package: ncbi-blast+
Version: 2.7.1-1+b6
Source Version: 2.7.1-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-01d85098-c2b1-4538-bc2b-4a8d2079f711' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.2 MB in 27s (895 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/ncbi-blast+.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/ncbi-blast+.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 23.7 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main ncbi-blast+ 2.7.1-1 (dsc) [2305 B]
Get:2 http://172.17.0.1/private buster-staging/main ncbi-blast+ 2.7.1-1 (tar) [23.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main ncbi-blast+ 2.7.1-1 (diff) [21.2 kB]
Fetched 23.7 MB in 2s (9649 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ncbi-blast+-Qy2oIr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/gpg/pubring.kbx' created
gpg: /build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ InRelease
Get:2 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release [957 B]
Get:3 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release.gpg
Get:4 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Sources [349 B]
Get:5 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Packages [432 B]
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Reading package lists...
W: copy:///build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n krb5-locales libgpg-error-l10n
libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
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After this operation, 0 B of additional disk space will be used.
Get:1 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15625 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev
Filtered Build-Depends: autotools-dev, debhelper (>= 9), libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ncbi-blast+-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ InRelease
Get:2 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release [963 B]
Get:3 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release.gpg
Get:4 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Sources [551 B]
Get:5 copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Packages [634 B]
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Reading package lists...
W: copy:///build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/build/ncbi-blast+-Qy2oIr/resolver-UwRMjZ/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install ncbi-blast+ build dependencies (apt-based resolver)
-----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n krb5-locales libgpg-error-l10n
libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-chrono1.67.0
libboost-system1.67.0 libboost-test-dev libboost-test1.67-dev
libboost-test1.67.0 libboost-timer1.67.0 libboost1.67-dev libbsd0 libbz2-dev
libcroco3 libelf1 libevent-2.1-6 libfile-stripnondeterminism-perl
libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27
libgnutls28-dev libgnutlsxx28 libicu63 libidn2-0-dev libidn2-dev
libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls-dev libmbedtls12
libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtool libunbound8
libxml2 m4 man-db nettle-dev po-debconf time zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev
libboost-container1.67-dev libboost-context1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-thread1.67-dev
libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev
libboost1.67-tools-dev libmpfrc++-dev libntl-dev gmp-doc libgmp10-doc
libmpfr-dev dns-root-data gnutls-doc gnutls-bin libmbedtls-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libtasn1-doc libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libboost-chrono1.67.0
libboost-system1.67.0 libboost-test-dev libboost-test1.67-dev
libboost-test1.67.0 libboost-timer1.67.0 libboost1.67-dev libbsd0 libbz2-dev
libcroco3 libelf1 libevent-2.1-6 libfile-stripnondeterminism-perl
libglib2.0-0 libgmp-dev libgmpxx4ldbl libgnutls-dane0 libgnutls-openssl27
libgnutls28-dev libgnutlsxx28 libicu63 libidn2-0-dev libidn2-dev
libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls-dev libmbedtls12
libmbedx509-0 libp11-kit-dev libpcre16-3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libsigsegv2 libtasn1-6-dev libtool libunbound8
libxml2 m4 man-db nettle-dev po-debconf
sbuild-build-depends-ncbi-blast+-dummy time zlib1g-dev
0 upgraded, 62 newly installed, 0 to remove and 1 not upgraded.
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Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
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Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
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Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-8+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.10-2+rpi1+b1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 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libgnutls28-dev_3.5.19-1+b1 libgnutls30_3.5.19-1+b1 libgnutlsxx28_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1 libhogweed4_3.4-1 libicu63_63.1-4 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libidn2-0-dev_2.0.5-1 libidn2-dev_2.0.5-1 libip4tc0_1.8.2-2 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmbedcrypto3_2.13.0-3 libmbedtls-dev_2.13.0-3 libmbedtls12_2.13.0-3 libmbedx509-0_2.13.0-3 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit-dev_0.23.14-2 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam0g_1.1.8-3.8 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.0-4 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.3-2 libss2_1.44.4-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libsystemd0_239-13+rpi1 libtasn1-6_4.13-3 libtasn1-6-dev_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-13+rpi1 libunbound8_1.8.1-1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.10-2+rpi1+b1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mount_2.32.1-0.1 multiarch-support_2.27-8+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 nettle-dev_3.4-1 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-4 perl-base_5.28.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.0-4 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-13+rpi1 sysvinit-utils_2.92~beta-2 tar_1.30+dfsg-3+rpi1 time_1.7-25.1 tzdata_2018g-1 udev_239-13+rpi1 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 15 11:14:18 2018 UTC
gpgv: using RSA key 78DC68DB326D8438
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.7.1-1.dsc
dpkg-source: info: extracting ncbi-blast+ in /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1
dpkg-source: info: unpacking ncbi-blast+_2.7.1.orig.tar.gz
dpkg-source: info: unpacking ncbi-blast+_2.7.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying enable_clean_after_failed_compile
dpkg-source: info: applying hurd_fixes
dpkg-source: info: applying legacy_rename_rpsblast
dpkg-source: info: applying fix_lib_deps
dpkg-source: info: applying no_multiarch_rpath
dpkg-source: info: applying use_pie_for_apps
dpkg-source: info: applying skip_services_unit_test
dpkg-source: info: applying fix_configure
dpkg-source: info: applying support_x32
dpkg-source: info: applying suppress_gnutls_version_check
dpkg-source: info: applying optionally_keep_sequence
dpkg-source: info: applying fix_unit_tests
dpkg-source: info: applying remove_embedded_mbedtls
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.7.1-1+b6
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-01d85098-c2b1-4538-bc2b-4a8d2079f711
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ncbi-blast+
dpkg-buildpackage: info: source version 2.7.1-1+b6
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
# dh clean -Dc++ --with autotools_dev
dh clean -Dc++
dh_testdir -O-Dc\+\+
dh_auto_clean -O-Dc\+\+
debian/rules override_dh_clean
make[1]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
cp c++/configure.orig configure.orig.save
dh_clean
#Tricky - for each module directory there may be several module files
#or there may be none but then there is still a module named after the
#directory. Clean everything!
for x in c++/src/objects/* ; do \
(cd "$x" && ( \
mods="`echo *.module`" ; \
[ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \
for mod in $mods ; do \
../../../BUILD/build/new_module.sh $mod purge_sources ; \
done ) ; \
) ; \
done
/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt
/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in
/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd
/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found
make[1]: [debian/rules:108: override_dh_clean] Error 127 (ignored)
rm -rf c++/compilers/dll c++/config.log c++/Makefile
rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module
find -name check_exec.pid -delete
rm -rf c++/BUILD
mv configure.orig.save c++/configure.orig
make[1]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
debian/rules build-arch
# dh build-arch -Dc++ --with autotools_dev
dh build-arch -Dc++
dh_testdir -a -O-Dc\+\+
dh_update_autotools_config -a -O-Dc\+\+
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \
CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \
|| (tail -v -n +0 config.log BUILD/status/config.log; exit 1)
configure: loading site script ./src/build-system/config.site
configure: creating cache config.cache
configure: WARNING: --with(out)-dbapi is deprecated
configure: WARNING: please simply pass an appropriate project list
checking TeamCity build number... none
checking Subversion revision... unknown
checking NCBI stable components' version... unknown
checking build system type... armv7l-unknown-linux-gnueabihf
checking host system type... armv7l-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for gcc... gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
adjusted C compiler: /usr/bin/gcc
adjusted C++ compiler: /usr/bin/g++
checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic
checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes
checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed
checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive
checking whether _LIBCPP_VERSION is declared... no
checking how to enable C++ '11 features in /usr/bin/g++ ... -std=gnu++11
checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline
checking for dpkg-architecture... /usr/bin/dpkg-architecture
checking for gawk... no
checking for mawk... mawk
checking for GNU make... /usr/bin/make
checking for /usr/bin/make... /usr/bin/make
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for ar... ar cr
checking ranlib's effectiveness... neutral
checking for strip... strip
checking whether strip loses runtime type information... no
checking for ccache... no
checking for tail... /usr/bin/tail
checking whether /usr/bin/tail accepts modern syntax (-n N)... yes
checking for basename... /usr/bin/basename
checking for sed... /bin/sed
checking for touch... /bin/touch
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking how to run /bin/grep -E quietly... /bin/grep -E -q
checking for valgrind... no
checking for ldd... /usr/bin/ldd
checking whether /usr/bin/ldd accepts -r... yes
checking for uuidgen... no
checking for cd_reporter... no
checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++11 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for size_t... (cached) yes
checking size of size_t... 4
checking for amq... no
checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes
checking how to run the C preprocessor... gcc -E
checking whether cross-directory hard links work... yes
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking iostream.h usability... no
checking iostream.h presence... no
checking for iostream.h... no
checking fstream usability... yes
checking fstream presence... yes
checking for fstream... yes
checking fstream.h usability... no
checking fstream.h presence... no
checking for fstream.h... no
checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking strstream.h usability... no
checking strstream.h presence... no
checking for strstream.h... no
checking strstrea.h usability... no
checking strstrea.h presence... no
checking for strstrea.h... no
checking for inttypes.h... (cached) yes
checking limits usability... yes
checking limits presence... yes
checking for limits... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for unistd.h... (cached) yes
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking for wstring... yes
checking for socklen_t... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking cpuid.h usability... no
checking cpuid.h presence... no
checking for cpuid.h... no
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking sys/epoll.h usability... yes
checking sys/epoll.h presence... yes
checking for sys/epoll.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking sys/sysinfo.h usability... yes
checking sys/sysinfo.h presence... yes
checking for sys/sysinfo.h... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking x86intrin.h usability... no
checking x86intrin.h presence... no
checking for x86intrin.h... no
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking libgen.h usability... yes
checking libgen.h presence... yes
checking for libgen.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking paths.h usability... yes
checking paths.h presence... yes
checking for paths.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking whether time.h and sys/time.h may both be included... yes
checking cxxabi.h usability... yes
checking cxxabi.h presence... yes
checking for cxxabi.h... yes
checking whether abi::__cxa_demangle is declared... yes
checking for gethostbyname_r... 6
checking for gethostbyaddr_r... 8
checking for getservbyname_r... 6
checking for getpwuid_r... 5
checking for getlogin_r... yes
checking for localtime_r... yes
checking for pthread_setconcurrency... yes
checking for pthread_atfork... yes
checking return type of localtime_r... struct
checking whether pthread mutexes are available... yes
checking for vprintf... yes
checking for _doprnt... no
checking for alarm... yes
checking for asprintf... yes
checking for atoll... yes
checking for basename... yes
checking for euidaccess... yes
checking for fseeko... yes
checking for fstat... yes
checking for getgrouplist... yes
checking for getopt... yes
checking for getpagesize... yes
checking for getpass... yes
checking for getpassphrase... no
checking for getpwuid... yes
checking for getrusage... yes
checking for gettimeofday... yes
checking for getuid... yes
checking for lchown... yes
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checking for memrchr... yes
checking for putenv... yes
checking for readpassphrase... no
checking for readv... yes
checking for select... yes
checking for setenv... yes
checking for statfs... yes
checking for statvfs... yes
checking for strcasecmp... yes
checking for strdup... yes
checking for strlcat... no
checking for strlcpy... no
checking for strndup... yes
checking for strnlen... yes
checking for strsep... yes
checking for strtok_r... yes
checking for sysmp... no
checking for timegm... yes
checking for usleep... yes
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checking for vasprintf... yes
checking for vsnprintf... yes
checking for writev... yes
checking return type of signal handlers... void
checking whether select updates the timeout when interrupted... yes
checking whether strcasecmp treats letters as lowercase... yes
checking for Linux-like sysinfo with 1 arg... yes
checking for getloadavg... yes
checking for readdir_r... 3
checking for an ANSI C-conforming const... yes
checking whether byte ordering is bigendian... no
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config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/serial/Makefile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/app/blast/Makefile
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config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/app/blastdb/Makefile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/app/dustmasker/Makefile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/app/segmasker/Makefile
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config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib/Makefile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib/Makefile.precompile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/./Makefile
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc/common/ncbi_build_ver.h
config.status: creating /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h
config.status: executing default commands
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib/ncbicfg.c is updated
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc/common/ncbi_build_ver.h is updated
make[2]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers'
/usr/bin/make -f /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/build-system/helpers TMPL=run_with_lock -kw all
make[3]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers'
gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o
gcc -Wl,-rpath,/usr/lib/ncbi-blast+ -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -fPIE -pie run_with_lock.o -Wl,-rpath-link,/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -lm -lpthread -o run_with_lock
/bin/bash /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/bin
/bin/ln -f run_with_lock /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/bin/run_with_lock
make[3]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers'
make[2]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/build-system/helpers'
Platform not defined for Linux armv7l -- please fix me
project_tree_builder is not found at /net/snowman/vol/export2/win-coremake/App/Ncbi/cppcore/ptb/UNKNOWN/4.2.1/project_tree_builder
Will build project_tree_builder locally
**********************************************************************
Building project_tree_builder
**********************************************************************
make[2]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
make[3]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
make[4]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'.
make[4]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'.
/usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'.
/usr/bin/make -f /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib TMPL=corelib -w all
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_os_unix.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/blob_storage.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/blob_storage.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ddumpable.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ddumpable.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbienv.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/env_reg.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/env_reg.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbireg.hpp:50,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/metareg.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:44,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/tempstr.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbireg.hpp:50,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/metareg.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp:35:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ncbi::CMetaRegistry::SEntry&}; _Tp = ncbi::CMetaRegistry::SEntry; _Alloc = std::allocator<ncbi::CMetaRegistry::SEntry>]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<ncbi::CMetaRegistry::SEntry>::iterator' {aka '__gnu_cxx::__normal_iterator<ncbi::CMetaRegistry::SEntry*, std::vector<ncbi::CMetaRegistry::SEntry> >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:44,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/tempstr.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbireg.hpp:50,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/metareg.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp:35:
/usr/include/c++/8/bits/stl_vector.h: In member function 'const ncbi::CMetaRegistry::SEntry& ncbi::CMetaRegistry::x_Load(const string&, ncbi::CMetaRegistry::ENameStyle, ncbi::CMetaRegistry::TFlags, ncbi::IRegistry::TFlags, ncbi::IRWRegistry*, const string&, ncbi::CMetaRegistry::ENameStyle, ncbi::CMetaRegistry::SEntry&, const string&)':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ncbi::CMetaRegistry::SEntry*, std::vector<ncbi::CMetaRegistry::SEntry> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_config.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ddumpable.cpp -o ddumpable.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/env_reg.cpp -o env_reg.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/metareg.cpp -o metareg.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MTIn file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_param.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_system.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_process.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_safe_static.hpp:48,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_safe_static.cpp:38:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_signal.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_signal.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_stack.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_system.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp: In member function 'void ncbi::CNcbiApplication::x_TryMain(ncbi::EAppDiagStream, const char*, int*, bool*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp:460:20: warning: catching polymorphic type 'class ncbi::CArgHelpException' by value [-Wcatch-value=]
catch (CArgHelpException) {
^~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp: In member function 'int ncbi::CNcbiApplication::AppMain(int, const char* const*, const char* const*, ncbi::EAppDiagStream, const char*, const string&)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp:792:20: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=]
catch (CArgException) {
^~~~~~~~~~~~~
-D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-sIn file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:38:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In member function 'bool ncbi::CArgDescriptions::x_CreateArg(const string&, const string&, bool, const string&, unsigned int, ncbi::CArgs&, bool, ncbi::CArgValue**) const':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2917:12: warning: catching polymorphic type 'class ncbi::CArgException' by value [-Wcatch-value=]
catch (CArgException) {
^~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp: In function 'std::__cxx11::string ncbi::s_CArgs_ReadFromConsole(const string&, ncbi::EEchoInput, const char*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2058:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
write( tty, prompt.data(), prompt.length());
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp:2087:18: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result]
write( tty, thx.data(), thx.length());
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiatomic.cpp:45:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_safe_static.hpp:48,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidbg.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_process.hpp:44,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:36:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::sx_ThreadDataTlsCleanup(ncbi::CDiagContextThreadData*, void*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:854:67: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
value->GetProperties(CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
^
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexpt.hpp:42,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbidiag.hpp:1810:34: note: declared here
NCBI_DEPRECATED TProperties* GetProperties(EGetProperties flag);
^~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::SetProperty(const string&, const string&, ncbi::CDiagContext::EPropertyMode)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1776:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
catch (CException) {
^~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1824:49: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
CDiagContextThreadData::eProp_Create); /* NCBI_FAKE_WARNING */
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here
CDiagContextThreadData::GetProperties(EGetProperties flag)
^~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'std::__cxx11::string ncbi::CDiagContext::GetProperty(const string&, ncbi::CDiagContext::EPropertyMode) const':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1887:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here
CDiagContextThreadData::GetProperties(EGetProperties flag)
^~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::DeleteProperty(const string&, ncbi::CDiagContext::EPropertyMode)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1912:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here
CDiagContextThreadData::GetProperties(EGetProperties flag)
^~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'void ncbi::CDiagContext::PrintProperties()':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:1944:46: warning: 'ncbi::CDiagContextThreadData::TProperties* ncbi::CDiagContextThreadData::GetProperties(ncbi::CDiagContextThreadData::EGetProperties)' is deprecated [-Wdeprecated-declarations]
CDiagContextThreadData::eProp_Get); /* NCBI_FAKE_WARNING */
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:984:1: note: declared here
CDiagContextThreadData::GetProperties(EGetProperties flag)
^~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In function 'bool ncbi::s_GetLogConfigBool(ncbi::CTempString, bool, ncbi::CNcbiRegistry*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3103:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In static member function 'static void ncbi::CDiagContext::SetupDiag(ncbi::EAppDiagStream, ncbi::CNcbiRegistry*, ncbi::EDiagCollectMessages, const char*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:3244:48: warning: 'virtual bool ncbi::CNcbiApplication::SetupDiag_AppSpecific()' is deprecated [-Wdeprecated-declarations]
app->SetupDiag_AppSpecific(); /* NCBI_FAKE_WARNING */
^
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:48,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:362:34: note: declared here
NCBI_DEPRECATED virtual bool SetupDiag_AppSpecific(void);
^~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::x_ParseExtraArgs(const string&, size_t)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4235:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4247:16: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'bool ncbi::SDiagMessage::ParseMessage(const string&)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4334:20: warning: catching polymorphic type 'class ncbi::CTimeException' by value [-Wcatch-value=]
catch (CTimeException) {
^~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4520:28: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4606:12: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
catch (CException) {
^~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp: In member function 'virtual void ncbi::CFileHandleDiagHandler::Reopen(ncbi::CDiagHandler::TReopenFlags)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:5862:16: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=]
catch (CException) {
^~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_process.hpp:44,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:36:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs<TContainer>::Parse(ncbi::CStringPairs<TContainer>::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; ncbi::CStringPairs<TContainer>::TStrPairs = std::__cxx11::list<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >; EOwnership = ENcbiOwnership]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs<TContainer>::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::__cxx11::list<std::pair<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> > >]'
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp:4233:52: required from here
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiutil.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.hpp:42,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbidll.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidll.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include ncbicfg.c -o ncbicfg.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidbg.cpp -o ncbidbg.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag.cpp -o ncbidiag.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidiag_p.cpp -o ncbidiag_p.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbidll.cpp -o ncbidll.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbienv.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbienv.cpp:36:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_process.hpp:44,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiexec.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexec.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexpt.cpp:41:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_system.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbifile.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimempool.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbimempool.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbimtx.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiobj.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbienv.cpp -o ncbienv.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexec.cpp -o ncbiexec.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiexpt.cpp -o ncbiexpt.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbifile.cpp -o ncbifile.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o
/In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbireg.hpp:50,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbireg.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbistr.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbistre.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp:45:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp: In static member function 'static bool ncbi::CThread::IsMain()':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp:516:9: warning: variable 'id' set but not used [-Wunused-but-set-variable]
TID id = sx_ThreadId;
^~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp:32:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::x_Init(const string&, const ncbi::CTimeFormat&, ncbi::CTime::EErrAction)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp:696:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp:715:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/obj_store.hpp:33,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/obj_store.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbireg.cpp -o ncbireg.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbistr.cpp -o ncbistr.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbistre.cpp -o ncbistre.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbithr.cpp -o ncbithr.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbitime.cpp -o ncbitime.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/obj_store.cpp -o obj_store.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-bIn file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/plugin_manager.hpp:70,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/plugin_manager.hpp:70,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/plugin_manager_store.hpp:35,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager_store.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/stream_utils.cpp:42:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/syslog.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/syslog.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:12: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
: date(__DATE__ " " __TIME__)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:516:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
: date(__DATE__ " " __TIME__)
^~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/version.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/request_ctx.hpp:42,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp:36:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs<TContainer>::Parse(ncbi::CStringPairs<TContainer>::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char>, ncbi::PNocase_Generic<std::__cxx11::basic_string<char> > >; ncbi::CStringPairs<TContainer>::TStrPairs = std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char>, ncbi::PNocase_Generic<std::__cxx11::basic_string<char> > >; EOwnership = ENcbiOwnership]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp:725:43: required from here
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~
last+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/stream_utils.cpp -o stream_utils.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/syslog.cpp -o syslog.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/version.cpp -o version.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_ctx.cpp -o request_ctx.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_system.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_control.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/expr.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp:36:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp:38:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In instantiation of 'static void ncbi::CStringPairs<TContainer>::Parse(ncbi::CStringPairs<TContainer>::TStrPairs&, ncbi::CTempString, ncbi::CTempString, ncbi::CTempString, ncbi::IStringDecoder*, EOwnership, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; ncbi::CStringPairs<TContainer>::TStrPairs = std::multimap<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >; EOwnership = ENcbiOwnership]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3949:9: required from 'void ncbi::CStringPairs<TContainer>::Parse(ncbi::CTempString, ncbi::NStr::EMergeDelims) [with TContainer = std::multimap<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >]'
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp:326:43: required from here
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:3989:17: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_system.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbifile.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/interprocess_lock.cpp:32:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_autoinit.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_autoinit.cpp:35:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbitime.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/perf_log.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/perf_log.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_control.cpp -o request_control.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/expr.cpp -o expr.o
/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_strings.c -o ncbi_strings.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/resource_info.cpp -o resource_info.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/interprocess_lock.cpp -o interprocess_lock.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_autoinit.cpp -o ncbi_autoinit.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/perf_log.cpp -o perf_log.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/nIn file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_toolkit.cpp:31:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr.hpp:46,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbierror.cpp:31:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbienv.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp: In member function 'void ncbi::CUrl::SetUrl(const string&, const ncbi::IUrlEncoder*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp:460:20: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=]
catch (CStringException) {
^~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_param.hpp:41,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_url.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_cookies.hpp:36,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp: In member function 'bool ncbi::CHttpCookie::Validate() const':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp:327:12: warning: catching polymorphic type 'class ncbi::CHttpCookieException' by value [-Wcatch-value=]
catch (CHttpCookieException) {
^~~~~~~~~~~~~~~~~~~~
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbi_message.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_message.cpp:33:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_toolkit.cpp -o ncbi_toolkit.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbierror.cpp -o ncbierror.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_url.cpp -o ncbi_url.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_cookies.cpp -o ncbi_cookies.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/guard.cpp -o guard.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/ncbi_message.cpp -o ncbi_message.o
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/request_status.cpp -o request_status.o
/bin/rm -f libxncbi.so .libxncbi.so.stamp
/usr/bin/g++ -std=gnu++11 -shared -o libxncbi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o -Wl,-rpath-link,/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -ldl -ldl -lm -lpthread
/bin/bash /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.so /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib
/bin/ln -f libxncbi.so /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib/libxncbi.so
/bin/ln -f .xncbi.dep /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/status/.xncbi.dep
make[4]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/make -f /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_mt -w all
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbicntr.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiobj.hpp:39,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiargs.hpp:84,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbiapp.hpp:43,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/test_mt.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_mt.cpp:34:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_mt.cpp -o test_mt.o
/bin/rm -f libtest_mt.so .libtest_mt.so.stamp
/usr/bin/g++ -std=gnu++11 -shared -o libtest_mt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O -fPIC test_mt.o -Wl,-rpath-link,/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -L/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib -lxncbi -ldl -lm -lpthread
/bin/bash /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.so /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib
/bin/ln -f libtest_mt.so /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_mt.so
/bin/ln -f .test_mt.dep /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/status/.test_mt.dep
make[4]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/make -f /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib TMPL=test_boost -w all
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistd.hpp:37,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbithr_conf.hpp:38,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbimtx.hpp:62,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbienv.hpp:40,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:37:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static TNumeric ncbi::NStr::StringToNumeric(ncbi::CTempString, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4522:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp: In static member function 'static bool ncbi::NStr::StringToNumeric(ncbi::CTempString, TNumeric*, ncbi::NStr::TStringToNumFlags, int) [with TNumeric = wchar_t; ncbi::NStr::TStringToNumFlags = int]':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:11: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include/corelib/ncbistr.hpp:4549:51: warning: comparison of integer expressions of different signedness: 'int' and 'wchar_t' [-Wsign-compare]
if (n < numeric_limits<wchar_t>::min() || n > numeric_limits<wchar_t>::max()) {
~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In constructor 'ncbi::CNcbiTestApplication::CNcbiTestApplication()':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:925:39: error: invalid new-expression of abstract class type 'ncbi::CNcbiBoostLogger'
m_Logger = new CNcbiBoostLogger();
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:224:7: note: because the following virtual functions are pure within 'ncbi::CNcbiBoostLogger':
class CNcbiBoostLogger : public TBoostLogFormatter
^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19,
from /usr/include/boost/test/included/unit_test.hpp:18,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70:
/usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)'
virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0;
^~~~~~~~~~~~~~~~~
/usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)'
virtual void entry_context_finish( std::ostream& os, log_level l ) = 0;
^~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::SetTestDisabled(boost::unit_test::test_unit*)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config'
RTCFG(std::vector<std::string>, RUN_FILTERS, test_to_run)
^~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:997:9: note: in expansion of macro 'CONFIGURED_FILTERS'
if (CONFIGURED_FILTERS.empty()) {
^~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'void ncbi::CNcbiTestApplication::x_SetupBoostReporters()':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1665:59: error: 'REPORT_FORMAT' is not a member of 'boost::unit_test::runtime_config'
but::output_format format = RTCFG(but::output_format, REPORT_FORMAT,
^~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1693:57: error: 'LOG_FORMAT' is not a member of 'boost::unit_test::runtime_config'
m_Logger->SetOutputFormat(RTCFG(but::output_format, LOG_FORMAT,
^~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'boost::unit_test::test_suite* ncbi::CNcbiTestApplication::InitTestFramework(int, char**)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:116:37: error: 'RUN_FILTERS' is not a member of 'boost::unit_test::runtime_config'
RTCFG(std::vector<std::string>, RUN_FILTERS, test_to_run)
^~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:1815:19: note: in expansion of macro 'CONFIGURED_FILTERS'
&& (!CONFIGURED_FILTERS.empty() || x_ReadConfiguration()))
^~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::log_entry_context(std::ostream&, boost::unit_test::const_string)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2130:43: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::const_string&)'
m_Upper->log_entry_context(ostr, value);
^
In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19,
from /usr/include/boost/test/included/unit_test.hpp:18,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70:
/usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)'
virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0;
^~~~~~~~~~~~~~~~~
/usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: candidate expects 3 arguments, 2 provided
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiBoostLogger::entry_context_finish(std::ostream&)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2135:39: error: no matching function for call to 'boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&)'
m_Upper->entry_context_finish(ostr);
^
In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19,
from /usr/include/boost/test/included/unit_test.hpp:18,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70:
/usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)'
virtual void entry_context_finish( std::ostream& os, log_level l ) = 0;
^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: candidate expects 2 arguments, 1 provided
In file included from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2227:
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp: In constructor 'jetbrains::teamcity::TeamcityFormatterRegistrar::TeamcityFormatterRegistrar()':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:92:89: error: invalid new-expression of abstract class type 'jetbrains::teamcity::TeamcityBoostLogFormatter'
boost::unit_test::unit_test_log.set_formatter(new TeamcityBoostLogFormatter());
^
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:44:7: note: because the following virtual functions are pure within 'jetbrains::teamcity::TeamcityBoostLogFormatter':
class TeamcityBoostLogFormatter: public boost::unit_test::unit_test_log_formatter {
^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/test/output/compiler_log_formatter.hpp:17,
from /usr/include/boost/test/impl/compiler_log_formatter.ipp:19,
from /usr/include/boost/test/included/unit_test.hpp:18,
from /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:70:
/usr/include/boost/test/unit_test_log_formatter.hpp:267:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::log_entry_context(std::ostream&, boost::unit_test::log_level, boost::unit_test::const_string)'
virtual void log_entry_context( std::ostream& os, log_level l, const_string value ) = 0;
^~~~~~~~~~~~~~~~~
/usr/include/boost/test/unit_test_log_formatter.hpp:274:25: note: 'virtual void boost::unit_test::unit_test_log_formatter::entry_context_finish(std::ostream&, boost::unit_test::log_level)'
virtual void entry_context_finish( std::ostream& os, log_level l ) = 0;
^~~~~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/teamcity_boost.cpp:94:40: error: 'LOG_LEVEL' is not a member of 'boost::unit_test::runtime_config'
(RTCFG(but::log_level, LOG_LEVEL, log_level));
^~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp: In function 'int main(int, char**)':
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2266:25: error: 'WAIT_FOR_DEBUGGER' is not a member of 'boost::unit_test::runtime_config'
if( RTCFG(bool, WAIT_FOR_DEBUGGER, wait_for_debugger) ) {
^~~~~~~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2275:56: error: 'LIST_CONTENT' is not a member of 'boost::unit_test::runtime_config'
output_format list_cont = RTCFG(output_format, LIST_CONTENT,
^~~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2292:25: error: 'LIST_LABELS' is not a member of 'boost::unit_test::runtime_config'
if( RTCFG(bool, LIST_LABELS, list_labels) ) {
^~~~~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:99:58: note: in definition of macro 'RTCFG'
but::runtime_config::get<type >(but::runtime_config::new_name)
^~~~~~~~
/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp:2319:56: error: 'RESULT_CODE' is not a member of 'boost::unit_test::runtime_config'
runtime_config::get<bool>( runtime_config::RESULT_CODE )
^~~~~~~~~~~
make[4]: *** [/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.rules:76: test_boost.o] Error 1
make[4]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/usr/bin/g++ -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc -I/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/include /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/corelib/test_boost.cpp -o test_boost.o
make[4]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
FAILED: src/corelib/Makefile.test_boost.lib
make[4]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
/bin/rm -f libtest_boost.so libtest_boost.so .test_boost.dep .libtest_boost.so.stamp
/bin/rm -f /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/lib/libtest_boost.so /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/status/.test_boost.dep
make[4]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
make[3]: *** [/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:301: all.nonusr] Error 2
make[3]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
make[2]: *** [/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/src/build-system/Makefile.meta_l:259: all_l.real] Error 2
make[2]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib'
------------------------------------------------------
Current dir: /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/corelib
[create_flat_makefile.sh] FAILED (status 2):
make
===============================================================================
NCBI C++ Toolkit documentation:
Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/
Local: ./doc/public/index.html
For the available configuration flags run: ./configure --help
CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC
CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC
CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE
LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O
LIBRARIES: build as dynamic by default
FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux
PACKAGES:
enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB
disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC
PROJECTS:
enabled: cgi serial objects app algo
disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench
Tools / flags / paths: /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk
Configuration header: /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h
To build everything: cd /build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r
or simply run /usr/bin/make in the current directory
******* CONFIGURATION SUCCESSFUL *******
make[1]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
cd c++/BUILD/build && \
make -j4 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/"
make[2]: Entering directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build'
make[2]: Makefile.flat: No such file or directory
make[2]: *** No rule to make target 'Makefile.flat'. Stop.
make[2]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1/c++/BUILD/build'
make[1]: *** [debian/rules:56: override_dh_auto_build-arch] Error 2
make[1]: Leaving directory '/build/ncbi-blast+-Qy2oIr/ncbi-blast+-2.7.1'
make: *** [debian/rules:129: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-12-02T09:17:27Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /build/ncbi-blast+-Qy2oIr
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 2313
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 420
Job: ncbi-blast+_2.7.1-1
Machine Architecture: armhf
Package: ncbi-blast+
Package-Time: 2800
Source-Version: 2.7.1-1
Space: 0
Status: failed
Version: 2.7.1-1+b6
--------------------------------------------------------------------------------
Finished at 2018-12-02T09:17:27Z
Build needed 00:00:00, 0k disc space